AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323110 MtrunA17_Chr2g0321381 93.056 288 19 1 1 288 1 287 0.0 531
Msa0323110 MtrunA17_Chr2g0321411 67.178 326 68 5 1 325 1 288 9.24e-149 419
Msa0323110 MtrunA17_Chr8g0355121 36.972 284 132 11 25 285 26 285 2.13e-35 130
Msa0323110 MtrunA17_Chr7g0254991 35.526 304 149 12 12 286 8 293 4.63e-35 129
Msa0323110 MtrunA17_Chr3g0080341 36.054 294 144 14 20 285 17 294 7.02e-35 129
Msa0323110 MtrunA17_Chr7g0266211 47.761 134 57 4 29 149 45 178 1.81e-29 117
Msa0323110 MtrunA17_Chr7g0266211 45.930 172 61 4 168 322 272 428 3.22e-25 105
Msa0323110 MtrunA17_Chr6g0460301 36.120 299 132 11 24 285 17 293 7.81e-27 107
Msa0323110 MtrunA17_Chr3g0133971 42.748 131 60 6 24 151 28 146 8.11e-20 89.7
Msa0323110 MtrunA17_Chr3g0133971 47.525 101 41 3 229 325 339 431 1.70e-16 79.7
Msa0323110 MtrunA17_Chr4g0044771 49.451 91 36 2 236 325 295 376 1.26e-15 77.0
Msa0323110 MtrunA17_Chr4g0044771 34.328 134 72 3 24 151 19 142 7.73e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323110 AT3G44460.1 44.444 333 154 9 7 325 16 331 7.82e-69 218
Msa0323110 AT2G36270.1 35.610 410 150 11 20 320 34 438 1.14e-56 190
Msa0323110 AT2G36270.2 35.610 410 150 11 20 320 34 438 1.14e-56 190
Msa0323110 AT2G36270.3 35.677 384 137 9 20 298 34 412 1.36e-55 187
Msa0323110 AT3G56850.1 39.427 279 124 12 25 285 18 269 1.06e-40 144
Msa0323110 AT2G41070.5 35.338 266 122 8 24 286 17 235 1.49e-36 132
Msa0323110 AT2G41070.3 35.793 271 123 9 24 291 17 239 2.60e-36 132
Msa0323110 AT2G41070.1 35.793 271 123 9 24 291 17 239 2.60e-36 132
Msa0323110 AT2G41070.2 35.793 271 123 9 24 291 17 239 2.60e-36 132
Msa0323110 AT2G41070.4 35.338 266 122 8 24 286 26 244 3.31e-36 132
Msa0323110 AT1G49720.1 35.323 201 106 9 21 210 20 207 4.13e-20 90.5
Msa0323110 AT1G49720.1 52.273 88 39 1 238 325 308 392 1.14e-15 77.4
Msa0323110 AT1G49720.3 35.323 201 106 9 21 210 20 207 4.13e-20 90.5
Msa0323110 AT1G49720.3 52.273 88 39 1 238 325 308 392 1.14e-15 77.4
Msa0323110 AT1G49720.2 35.323 201 106 9 21 210 20 207 5.76e-20 90.1
Msa0323110 AT1G49720.2 62.903 62 23 0 238 299 308 369 9.29e-15 75.1
Msa0323110 AT1G45249.7 35.294 153 88 2 24 165 37 189 1.11e-19 89.7
Msa0323110 AT1G45249.7 51.456 103 41 4 224 325 337 431 9.79e-16 77.8
Msa0323110 AT1G45249.6 35.294 153 88 2 24 165 37 189 1.11e-19 89.7
Msa0323110 AT1G45249.6 51.456 103 41 4 224 325 337 431 9.79e-16 77.8
Msa0323110 AT1G45249.1 35.294 153 88 2 24 165 22 174 1.41e-19 89.4
Msa0323110 AT1G45249.1 51.456 103 41 4 224 325 322 416 8.28e-16 78.2
Msa0323110 AT1G45249.3 35.294 153 88 2 24 165 22 174 1.98e-19 89.0
Msa0323110 AT1G45249.3 46.491 114 41 5 224 325 322 427 6.05e-13 69.7
Msa0323110 AT1G45249.10 35.294 153 88 2 24 165 22 174 2.99e-19 87.8
Msa0323110 AT1G45249.5 35.294 153 88 2 24 165 22 174 2.99e-19 87.8
Msa0323110 AT1G45249.4 35.294 153 88 2 24 165 22 174 3.41e-19 87.8
Msa0323110 AT1G45249.8 35.294 153 88 2 24 165 22 174 3.41e-19 87.8
Msa0323110 AT1G45249.2 35.294 153 88 2 24 165 22 174 3.41e-19 87.8
Msa0323110 AT1G45249.9 35.294 153 88 2 24 165 22 174 3.41e-19 87.8
Msa0323110 AT4G34000.3 31.532 222 96 6 24 201 28 237 6.71e-18 84.3
Msa0323110 AT4G34000.3 70.833 48 14 0 238 285 369 416 5.02e-14 72.8
Msa0323110 AT4G34000.1 31.532 222 96 6 24 201 28 237 7.03e-18 84.3
Msa0323110 AT4G34000.1 48.864 88 43 1 238 325 369 454 8.33e-16 78.2
Msa0323110 AT4G34000.4 31.532 222 96 6 24 201 28 237 7.03e-18 84.3
Msa0323110 AT4G34000.4 48.864 88 43 1 238 325 369 454 8.33e-16 78.2
Msa0323110 AT4G34000.2 31.532 222 96 6 24 201 28 237 7.03e-18 84.3
Msa0323110 AT4G34000.2 48.864 88 43 1 238 325 369 454 8.33e-16 78.2
Msa0323110 AT3G19290.1 43.511 131 64 3 201 325 305 431 1.03e-17 84.0
Msa0323110 AT3G19290.1 37.063 143 77 4 24 153 35 177 1.52e-16 80.5
Msa0323110 AT3G19290.5 43.511 131 64 3 201 325 305 431 1.03e-17 84.0
Msa0323110 AT3G19290.5 37.063 143 77 4 24 153 35 177 1.52e-16 80.5
Msa0323110 AT3G19290.3 43.511 131 65 3 201 325 305 432 1.63e-17 83.2
Msa0323110 AT3G19290.3 37.063 143 77 4 24 153 35 177 1.58e-16 80.5
Msa0323110 AT5G44080.1 29.386 228 129 5 98 325 120 315 2.70e-17 81.6
Msa0323110 AT3G19290.4 37.063 143 77 4 24 153 35 177 1.29e-16 80.5
Msa0323110 AT3G19290.4 55.556 81 36 0 219 299 329 409 2.16e-16 79.7
Msa0323110 AT3G19290.2 37.063 143 77 4 24 153 35 177 1.66e-16 80.1
Msa0323110 AT2G17770.2 31.100 209 117 8 100 301 1 189 2.05e-13 68.6
Msa0323110 AT5G42910.1 38.095 126 55 5 24 146 21 126 1.33e-12 68.2
Msa0323110 AT1G03970.1 26.190 210 100 4 98 300 85 246 4.01e-12 65.9

Find 63 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACCAGGTTGTGCTTAT+AGG 0.185713 2_4:+26762529 None:intergenic
AATCATAATGGCAATGTTTC+AGG 0.221412 2_4:-26763568 Msa0323110:CDS
TCTCTGTCCCTCCTCCAATT+TGG 0.252757 2_4:-26763771 Msa0323110:CDS
TTGAATATTGCAAGTTGTTA+TGG 0.294474 2_4:-26763532 Msa0323110:CDS
AATCAAGTGGGTGTAGTAAT+AGG 0.330386 2_4:-26763372 Msa0323110:CDS
TCAAAAGCTAAAACAAGTTC+TGG 0.355048 2_4:-26762877 Msa0323110:intron
GTCATTGAGGCTTGTTCACC+AGG 0.361408 2_4:+26762516 None:intergenic
AACACTTGGAGAAATGAGTT+TGG 0.378783 2_4:-26763647 Msa0323110:CDS
GCATTCAACAAAGGCTCAAA+AGG 0.385055 2_4:-26762581 Msa0323110:CDS
CTTCGCTCCACTACAACTTC+AGG 0.394469 2_4:+26763328 None:intergenic
ACTTACCTCTTGTTTCCTCT+TGG 0.402763 2_4:+26762719 None:intergenic
TGTTAATGTGTGACAACATT+TGG 0.412341 2_4:+26763443 None:intergenic
AGAATGAATTACCAAGTTGT+TGG 0.415586 2_4:+26763791 None:intergenic
ACTCAATGTGTGTCTAGAAA+TGG 0.419253 2_4:-26763478 Msa0323110:CDS
AGCTCTTTCCACTCTTGCAT+TGG 0.422494 2_4:+26763926 None:intergenic
GAGGATTTCTTAGTAAAAGC+TGG 0.422923 2_4:-26763625 Msa0323110:CDS
TGCAAGAGTGGAAAGAGCTT+TGG 0.423243 2_4:-26763922 Msa0323110:CDS
ATGAATTCCTTGCCAGCATA+TGG 0.439595 2_4:-26763885 Msa0323110:CDS
TTGCAAGTTGTTATGGTTTG+AGG 0.440862 2_4:-26763525 Msa0323110:CDS
GAATGAATTACCAAGTTGTT+GGG 0.445076 2_4:+26763792 None:intergenic
TCTTGCATTGGAACTCATCA+AGG 0.446472 2_4:+26763938 None:intergenic
TTGCCATTCAAGAATCATAA+TGG 0.446766 2_4:-26763580 Msa0323110:CDS
TTGCCATTATGATTCTTGAA+TGG 0.449693 2_4:+26763577 None:intergenic
TTATGGTTTGAGGCCTTCAA+TGG 0.451042 2_4:-26763515 Msa0323110:CDS
GAAAATCCCATTCCCATTGA+AGG 0.469209 2_4:+26763502 None:intergenic
AGAAAACTGTGGATGAAGTT+TGG 0.470434 2_4:-26763747 Msa0323110:CDS
TTGAGGCCTTCAATGGGAAT+GGG 0.472705 2_4:-26763508 Msa0323110:CDS
CTCAAGAAGCAACAAACACT+TGG 0.475735 2_4:-26763661 Msa0323110:CDS
TTATTTGTTTCTTTGAATTG+TGG 0.479374 2_4:+26763703 None:intergenic
CACACCGTTTCCCAACAACT+TGG 0.481051 2_4:-26763802 Msa0323110:CDS
TTGTCACACATTAACAACTT+AGG 0.482450 2_4:-26763436 Msa0323110:CDS
GCTTCTGCTTGTTCTTGCAA+TGG 0.484450 2_4:+26764006 None:intergenic
TTTGAGGCCTTCAATGGGAA+TGG 0.489129 2_4:-26763509 Msa0323110:CDS
ATTACCAAGTTGTTGGGAAA+CGG 0.492082 2_4:+26763798 None:intergenic
TTGTTTCTTTGAATTGTGGT+TGG 0.500429 2_4:+26763707 None:intergenic
AATAGGAAGAGGATAATTGA+TGG 0.515045 2_4:-26763355 Msa0323110:CDS
GTCATTAGAACTCCATATGC+TGG 0.516405 2_4:+26763873 None:intergenic
GTGGGTGTAGTAATAGGAAG+AGG 0.522464 2_4:-26763366 Msa0323110:CDS
ACTTGGAGAAATGAGTTTGG+AGG 0.522848 2_4:-26763644 Msa0323110:CDS
AAGGAATTCATCCATGTTGA+GGG 0.524720 2_4:+26763897 None:intergenic
TAACAACTTGCAATATTCAA+TGG 0.527054 2_4:+26763535 None:intergenic
ATCTAATTGTTGTAGAGCCA+TGG 0.537356 2_4:+26764038 None:intergenic
TATGGTTTGAGGCCTTCAAT+GGG 0.547796 2_4:-26763514 Msa0323110:CDS
TCGTTCTCGAGCAAGAAGAC+AGG 0.556810 2_4:-26763269 Msa0323110:intron
GAGCTTTGGTTCCCTCAACA+TGG 0.562617 2_4:-26763908 Msa0323110:CDS
CATTCAACAAAGGCTCAAAA+GGG 0.564482 2_4:-26762580 Msa0323110:CDS
GGCATATACATTAGAGCTAG+AGG 0.565644 2_4:-26762928 Msa0323110:CDS
CAAGGAATTCATCCATGTTG+AGG 0.566750 2_4:+26763896 None:intergenic
CATTAACAACTTAGGAGTGA+AGG 0.568609 2_4:-26763428 Msa0323110:CDS
TAGAACTCCATATGCTGGCA+AGG 0.571014 2_4:+26763878 None:intergenic
TGGTCCTCCTGAAGTTGTAG+TGG 0.592007 2_4:-26763335 Msa0323110:CDS
TCTACAACAATTAGATCAAG+AGG 0.593387 2_4:-26764031 Msa0323110:CDS
TCCAATTTGGAAGAAAACTG+TGG 0.593419 2_4:-26763758 Msa0323110:CDS
GCAACGAAAGCATTCAACAA+AGG 0.598492 2_4:-26762590 Msa0323110:CDS
CTGAAGTTGTAGTGGAGCGA+AGG 0.600061 2_4:-26763327 Msa0323110:CDS
GATGAGTTCCAATGCAAGAG+TGG 0.607955 2_4:-26763934 Msa0323110:CDS
CTTGCATTGGAACTCATCAA+GGG 0.629128 2_4:+26763939 None:intergenic
CGCTCCACTACAACTTCAGG+AGG 0.642123 2_4:+26763331 None:intergenic
AGGCTGAAGCTGAGACCAAG+AGG 0.647700 2_4:-26762734 Msa0323110:CDS
TGAGACCAAGAGGAAACAAG+AGG 0.662863 2_4:-26762724 Msa0323110:intron
GAAGGCCTATAAGCACAACC+TGG 0.668432 2_4:-26762534 Msa0323110:CDS
CAAAGCTTGACTGAATCAAG+TGG 0.677316 2_4:-26763385 Msa0323110:CDS
AAAGCTTGACTGAATCAAGT+GGG 0.724655 2_4:-26763384 Msa0323110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCTATTTAAATATGAAAT+AGG - chr2_4:26763813-26763832 Msa0323110:CDS 10.0%
!! TTTCTATTTAAATATGAAAT+AGG - chr2_4:26763813-26763832 Msa0323110:CDS 10.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2_4:26763616-26763635 None:intergenic 15.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2_4:26763894-26763913 Msa0323110:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2_4:26763895-26763914 Msa0323110:CDS 15.0%
!!! ATTGCAAGATATTTTTTTAT+AGG + chr2_4:26763616-26763635 None:intergenic 15.0%
!!! AAGTTGATATTTATATAACA+AGG - chr2_4:26763894-26763913 Msa0323110:CDS 15.0%
!!! AGTTGATATTTATATAACAA+GGG - chr2_4:26763895-26763914 Msa0323110:CDS 15.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2_4:26762867-26762886 None:intergenic 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2_4:26763470-26763489 None:intergenic 20.0%
!!! TTATTTGTTTCTTTGAATTG+TGG + chr2_4:26762867-26762886 None:intergenic 20.0%
!!! AAAATGCAGGTTTTAAAAAA+AGG + chr2_4:26763470-26763489 None:intergenic 20.0%
! TAACAACTTGCAATATTCAA+TGG + chr2_4:26763035-26763054 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2_4:26763035-26763054 Msa0323110:intron 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2_4:26763271-26763290 Msa0323110:CDS 25.0%
!! CTTTGTTATAGTTCTATGTT+AGG - chr2_4:26763345-26763364 Msa0323110:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2_4:26763406-26763425 Msa0323110:CDS 25.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2_4:26763618-26763637 Msa0323110:CDS 25.0%
!!! TTCTTGTTTTTGTTTCTTCA+TGG - chr2_4:26763763-26763782 Msa0323110:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2_4:26764015-26764034 Msa0323110:CDS 25.0%
! TAACAACTTGCAATATTCAA+TGG + chr2_4:26763035-26763054 None:intergenic 25.0%
! TTGAATATTGCAAGTTGTTA+TGG - chr2_4:26763035-26763054 Msa0323110:intron 25.0%
! AATGTTGAAAAATCGTGAAT+CGG - chr2_4:26763271-26763290 Msa0323110:CDS 25.0%
!! CTTTGTTATAGTTCTATGTT+AGG - chr2_4:26763345-26763364 Msa0323110:CDS 25.0%
! CTTGATTTCGCAATAAATTA+TGG - chr2_4:26763406-26763425 Msa0323110:CDS 25.0%
! AAAAAAATATCTTGCAATGC+AGG - chr2_4:26763618-26763637 Msa0323110:CDS 25.0%
!!! TTCTTGTTTTTGTTTCTTCA+TGG - chr2_4:26763763-26763782 Msa0323110:CDS 25.0%
! AAAAATTAAGAGCAATGAGA+AGG - chr2_4:26764015-26764034 Msa0323110:CDS 25.0%
TCTACAACAATTAGATCAAG+AGG - chr2_4:26762536-26762555 Msa0323110:CDS 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2_4:26762600-26762619 None:intergenic 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2_4:26762740-26762759 Msa0323110:intron 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2_4:26762778-26762797 None:intergenic 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2_4:26762779-26762798 None:intergenic 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2_4:26762863-26762882 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2_4:26762987-26763006 Msa0323110:intron 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2_4:26762993-26763012 None:intergenic 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2_4:26762999-26763018 Msa0323110:intron 30.0%
TGTTAATGTGTGACAACATT+TGG + chr2_4:26763127-26763146 None:intergenic 30.0%
TTGTCACACATTAACAACTT+AGG - chr2_4:26763131-26763150 Msa0323110:intron 30.0%
AATAGGAAGAGGATAATTGA+TGG - chr2_4:26763212-26763231 Msa0323110:intron 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2_4:26763343-26763362 None:intergenic 30.0%
TAATGTGAATCACAAAATGC+AGG + chr2_4:26763483-26763502 None:intergenic 30.0%
TCAAAAGCTAAAACAAGTTC+TGG - chr2_4:26763690-26763709 Msa0323110:CDS 30.0%
TCTACAACAATTAGATCAAG+AGG - chr2_4:26762536-26762555 Msa0323110:CDS 30.0%
!!! AGTATTGAGTTTTGTTTGCT+TGG + chr2_4:26762600-26762619 None:intergenic 30.0%
TGCTAAAAATGTTGCAACAA+CGG - chr2_4:26762740-26762759 Msa0323110:intron 30.0%
GAATGAATTACCAAGTTGTT+GGG + chr2_4:26762778-26762797 None:intergenic 30.0%
AGAATGAATTACCAAGTTGT+TGG + chr2_4:26762779-26762798 None:intergenic 30.0%
! TTGTTTCTTTGAATTGTGGT+TGG + chr2_4:26762863-26762882 None:intergenic 30.0%
TTGCCATTCAAGAATCATAA+TGG - chr2_4:26762987-26763006 Msa0323110:intron 30.0%
TTGCCATTATGATTCTTGAA+TGG + chr2_4:26762993-26763012 None:intergenic 30.0%
AATCATAATGGCAATGTTTC+AGG - chr2_4:26762999-26763018 Msa0323110:intron 30.0%
TGTTAATGTGTGACAACATT+TGG + chr2_4:26763127-26763146 None:intergenic 30.0%
TTGTCACACATTAACAACTT+AGG - chr2_4:26763131-26763150 Msa0323110:intron 30.0%
AATAGGAAGAGGATAATTGA+TGG - chr2_4:26763212-26763231 Msa0323110:intron 30.0%
CATAGAACTATAACAAAGAG+TGG + chr2_4:26763343-26763362 None:intergenic 30.0%
TAATGTGAATCACAAAATGC+AGG + chr2_4:26763483-26763502 None:intergenic 30.0%
TCAAAAGCTAAAACAAGTTC+TGG - chr2_4:26763690-26763709 Msa0323110:CDS 30.0%
AAGGAATTCATCCATGTTGA+GGG + chr2_4:26762673-26762692 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2_4:26762772-26762791 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2_4:26762806-26762825 None:intergenic 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2_4:26762810-26762829 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2_4:26762809-26762828 Msa0323110:intron 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2_4:26762813-26762832 None:intergenic 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2_4:26762820-26762839 Msa0323110:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2_4:26762920-26762939 Msa0323110:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2_4:26762942-26762961 Msa0323110:intron 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2_4:26763042-26763061 Msa0323110:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2_4:26763089-26763108 Msa0323110:intron 35.0%
CATTAACAACTTAGGAGTGA+AGG - chr2_4:26763139-26763158 Msa0323110:intron 35.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2_4:26763183-26763202 Msa0323110:intron 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2_4:26763195-26763214 Msa0323110:intron 35.0%
TGTGATTCACATTAAGCTCA+AGG - chr2_4:26763489-26763508 Msa0323110:CDS 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2_4:26763535-26763554 None:intergenic 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2_4:26763590-26763609 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2_4:26763987-26764006 Msa0323110:CDS 35.0%
AAGGAATTCATCCATGTTGA+GGG + chr2_4:26762673-26762692 None:intergenic 35.0%
ATTACCAAGTTGTTGGGAAA+CGG + chr2_4:26762772-26762791 None:intergenic 35.0%
! TTTTCTTCCAAATTGGAGGA+GGG + chr2_4:26762806-26762825 None:intergenic 35.0%
! ACAGTTTTCTTCCAAATTGG+AGG + chr2_4:26762810-26762829 None:intergenic 35.0%
TCCAATTTGGAAGAAAACTG+TGG - chr2_4:26762809-26762828 Msa0323110:intron 35.0%
! TCCACAGTTTTCTTCCAAAT+TGG + chr2_4:26762813-26762832 None:intergenic 35.0%
AGAAAACTGTGGATGAAGTT+TGG - chr2_4:26762820-26762839 Msa0323110:intron 35.0%
AACACTTGGAGAAATGAGTT+TGG - chr2_4:26762920-26762939 Msa0323110:CDS 35.0%
GAGGATTTCTTAGTAAAAGC+TGG - chr2_4:26762942-26762961 Msa0323110:intron 35.0%
TTGCAAGTTGTTATGGTTTG+AGG - chr2_4:26763042-26763061 Msa0323110:intron 35.0%
ACTCAATGTGTGTCTAGAAA+TGG - chr2_4:26763089-26763108 Msa0323110:intron 35.0%
CATTAACAACTTAGGAGTGA+AGG - chr2_4:26763139-26763158 Msa0323110:intron 35.0%
AAAGCTTGACTGAATCAAGT+GGG - chr2_4:26763183-26763202 Msa0323110:intron 35.0%
AATCAAGTGGGTGTAGTAAT+AGG - chr2_4:26763195-26763214 Msa0323110:intron 35.0%
TGTGATTCACATTAAGCTCA+AGG - chr2_4:26763489-26763508 Msa0323110:CDS 35.0%
TGTTAAGGCAACCTAAATTG+TGG + chr2_4:26763535-26763554 None:intergenic 35.0%
ATGTTAGCAACTAGTTACCA+AGG + chr2_4:26763590-26763609 None:intergenic 35.0%
CATTCAACAAAGGCTCAAAA+GGG - chr2_4:26763987-26764006 Msa0323110:CDS 35.0%
CTTGCATTGGAACTCATCAA+GGG + chr2_4:26762631-26762650 None:intergenic 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2_4:26762632-26762651 None:intergenic 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2_4:26762674-26762693 None:intergenic 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2_4:26762682-26762701 Msa0323110:intron 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2_4:26762697-26762716 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2_4:26762807-26762826 None:intergenic 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2_4:26762890-26762909 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2_4:26762906-26762925 Msa0323110:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2_4:26762923-26762942 Msa0323110:CDS 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2_4:26763052-26763071 Msa0323110:intron 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2_4:26763053-26763072 Msa0323110:intron 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2_4:26763068-26763087 None:intergenic 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2_4:26763182-26763201 Msa0323110:intron 40.0%
AAATTATGGTCGAATGCGAC+AGG - chr2_4:26763420-26763439 Msa0323110:CDS 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2_4:26763521-26763540 Msa0323110:CDS 40.0%
TTGTACCAGACATGATATGG+CGG + chr2_4:26763566-26763585 None:intergenic 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2_4:26763569-26763588 None:intergenic 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2_4:26763570-26763589 Msa0323110:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2_4:26763639-26763658 Msa0323110:CDS 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2_4:26763851-26763870 None:intergenic 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2_4:26763977-26763996 Msa0323110:CDS 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2_4:26763986-26764005 Msa0323110:CDS 40.0%
CTTGCATTGGAACTCATCAA+GGG + chr2_4:26762631-26762650 None:intergenic 40.0%
TCTTGCATTGGAACTCATCA+AGG + chr2_4:26762632-26762651 None:intergenic 40.0%
CAAGGAATTCATCCATGTTG+AGG + chr2_4:26762674-26762693 None:intergenic 40.0%
ATGAATTCCTTGCCAGCATA+TGG - chr2_4:26762682-26762701 Msa0323110:intron 40.0%
GTCATTAGAACTCCATATGC+TGG + chr2_4:26762697-26762716 None:intergenic 40.0%
! GTTTTCTTCCAAATTGGAGG+AGG + chr2_4:26762807-26762826 None:intergenic 40.0%
! TGAGTGTCTCGCTTCTTTTA+AGG + chr2_4:26762890-26762909 None:intergenic 40.0%
CTCAAGAAGCAACAAACACT+TGG - chr2_4:26762906-26762925 Msa0323110:CDS 40.0%
ACTTGGAGAAATGAGTTTGG+AGG - chr2_4:26762923-26762942 Msa0323110:CDS 40.0%
! TTATGGTTTGAGGCCTTCAA+TGG - chr2_4:26763052-26763071 Msa0323110:intron 40.0%
! TATGGTTTGAGGCCTTCAAT+GGG - chr2_4:26763053-26763072 Msa0323110:intron 40.0%
GAAAATCCCATTCCCATTGA+AGG + chr2_4:26763068-26763087 None:intergenic 40.0%
CAAAGCTTGACTGAATCAAG+TGG - chr2_4:26763182-26763201 Msa0323110:intron 40.0%
AAATTATGGTCGAATGCGAC+AGG - chr2_4:26763420-26763439 Msa0323110:CDS 40.0%
TACGTCTGTGACCACAATTT+AGG - chr2_4:26763521-26763540 Msa0323110:CDS 40.0%
TTGTACCAGACATGATATGG+CGG + chr2_4:26763566-26763585 None:intergenic 40.0%
GGTTTGTACCAGACATGATA+TGG + chr2_4:26763569-26763588 None:intergenic 40.0%
ATCATGTCTGGTACAAACCT+TGG - chr2_4:26763570-26763589 Msa0323110:CDS 40.0%
GGCATATACATTAGAGCTAG+AGG - chr2_4:26763639-26763658 Msa0323110:CDS 40.0%
! ACTTACCTCTTGTTTCCTCT+TGG + chr2_4:26763851-26763870 None:intergenic 40.0%
!! GCAACGAAAGCATTCAACAA+AGG - chr2_4:26763977-26763996 Msa0323110:CDS 40.0%
GCATTCAACAAAGGCTCAAA+AGG - chr2_4:26763986-26764005 Msa0323110:CDS 40.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2_4:26762564-26762583 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2_4:26762633-26762652 Msa0323110:intron 45.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2_4:26762644-26762663 None:intergenic 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2_4:26762645-26762664 Msa0323110:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2_4:26762692-26762711 None:intergenic 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2_4:26763058-26763077 Msa0323110:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2_4:26763059-26763078 Msa0323110:intron 45.0%
! AGGAGTGAAGGATTTTGCTG+TGG - chr2_4:26763151-26763170 Msa0323110:intron 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2_4:26763201-26763220 Msa0323110:intron 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2_4:26763550-26763569 None:intergenic 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2_4:26763558-26763577 Msa0323110:CDS 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2_4:26763843-26763862 Msa0323110:CDS 45.0%
GCTTCTGCTTGTTCTTGCAA+TGG + chr2_4:26762564-26762583 None:intergenic 45.0%
GATGAGTTCCAATGCAAGAG+TGG - chr2_4:26762633-26762652 Msa0323110:intron 45.0%
AGCTCTTTCCACTCTTGCAT+TGG + chr2_4:26762644-26762663 None:intergenic 45.0%
TGCAAGAGTGGAAAGAGCTT+TGG - chr2_4:26762645-26762664 Msa0323110:intron 45.0%
TAGAACTCCATATGCTGGCA+AGG + chr2_4:26762692-26762711 None:intergenic 45.0%
! TTTGAGGCCTTCAATGGGAA+TGG - chr2_4:26763058-26763077 Msa0323110:intron 45.0%
TTGAGGCCTTCAATGGGAAT+GGG - chr2_4:26763059-26763078 Msa0323110:intron 45.0%
! AGGAGTGAAGGATTTTGCTG+TGG - chr2_4:26763151-26763170 Msa0323110:intron 45.0%
GTGGGTGTAGTAATAGGAAG+AGG - chr2_4:26763201-26763220 Msa0323110:intron 45.0%
ATGGCGGTCAAATGCTGTTA+AGG + chr2_4:26763550-26763569 None:intergenic 45.0%
TTTGACCGCCATATCATGTC+TGG - chr2_4:26763558-26763577 Msa0323110:CDS 45.0%
TGAGACCAAGAGGAAACAAG+AGG - chr2_4:26763843-26763862 Msa0323110:CDS 45.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2_4:26762659-26762678 Msa0323110:intron 50.0%
CACACCGTTTCCCAACAACT+TGG - chr2_4:26762765-26762784 Msa0323110:intron 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2_4:26762796-26762815 Msa0323110:intron 50.0%
TGGTCCTCCTGAAGTTGTAG+TGG - chr2_4:26763232-26763251 Msa0323110:intron 50.0%
CTTCGCTCCACTACAACTTC+AGG + chr2_4:26763242-26763261 None:intergenic 50.0%
! CTGAAGTTGTAGTGGAGCGA+AGG - chr2_4:26763240-26763259 Msa0323110:intron 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2_4:26763298-26763317 Msa0323110:CDS 50.0%
GAATTGTGAAGCGACAGCGA+AGG + chr2_4:26763387-26763406 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2_4:26764033-26764052 Msa0323110:CDS 50.0%
! GAGCTTTGGTTCCCTCAACA+TGG - chr2_4:26762659-26762678 Msa0323110:intron 50.0%
CACACCGTTTCCCAACAACT+TGG - chr2_4:26762765-26762784 Msa0323110:intron 50.0%
TCTCTGTCCCTCCTCCAATT+TGG - chr2_4:26762796-26762815 Msa0323110:intron 50.0%
TGGTCCTCCTGAAGTTGTAG+TGG - chr2_4:26763232-26763251 Msa0323110:intron 50.0%
CTTCGCTCCACTACAACTTC+AGG + chr2_4:26763242-26763261 None:intergenic 50.0%
! CTGAAGTTGTAGTGGAGCGA+AGG - chr2_4:26763240-26763259 Msa0323110:intron 50.0%
TCGTTCTCGAGCAAGAAGAC+AGG - chr2_4:26763298-26763317 Msa0323110:CDS 50.0%
GAATTGTGAAGCGACAGCGA+AGG + chr2_4:26763387-26763406 None:intergenic 50.0%
GAAGGCCTATAAGCACAACC+TGG - chr2_4:26764033-26764052 Msa0323110:CDS 50.0%
CGCTCCACTACAACTTCAGG+AGG + chr2_4:26763239-26763258 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2_4:26763437-26763456 Msa0323110:CDS 55.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2_4:26763451-26763470 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2_4:26763833-26763852 Msa0323110:CDS 55.0%
CGCTCCACTACAACTTCAGG+AGG + chr2_4:26763239-26763258 None:intergenic 55.0%
GACAGGTTCAGCCTCGATCA+CGG - chr2_4:26763437-26763456 Msa0323110:CDS 55.0%
AAGGTCTGTGACCGTGATCG+AGG + chr2_4:26763451-26763470 None:intergenic 55.0%
AGGCTGAAGCTGAGACCAAG+AGG - chr2_4:26763833-26763852 Msa0323110:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 26762531 26764058 26762531 ID=Msa0323110;Name=Msa0323110
chr2_4 mRNA 26762531 26764058 26762531 ID=Msa0323110-mRNA-1;Parent=Msa0323110;Name=Msa0323110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0|0|1|1|1|4|0|325
chr2_4 exon 26763270 26764058 26763270 ID=Msa0323110-mRNA-1:exon:9308;Parent=Msa0323110-mRNA-1
chr2_4 exon 26762878 26762949 26762878 ID=Msa0323110-mRNA-1:exon:9307;Parent=Msa0323110-mRNA-1
chr2_4 exon 26762725 26762754 26762725 ID=Msa0323110-mRNA-1:exon:9306;Parent=Msa0323110-mRNA-1
chr2_4 exon 26762531 26762617 26762531 ID=Msa0323110-mRNA-1:exon:9305;Parent=Msa0323110-mRNA-1
chr2_4 CDS 26763270 26764058 26763270 ID=Msa0323110-mRNA-1:cds;Parent=Msa0323110-mRNA-1
chr2_4 CDS 26762878 26762949 26762878 ID=Msa0323110-mRNA-1:cds;Parent=Msa0323110-mRNA-1
chr2_4 CDS 26762725 26762754 26762725 ID=Msa0323110-mRNA-1:cds;Parent=Msa0323110-mRNA-1
chr2_4 CDS 26762531 26762617 26762531 ID=Msa0323110-mRNA-1:cds;Parent=Msa0323110-mRNA-1
Gene Sequence

>Msa0323110

ATGGCTCTACAACAATTAGATCAAGAGGTTCCATTGCAAGAACAAGCAGAAGCTACATTTTCTCAACCAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCCAATGCAAGAGTGGAAAGAGCTTTGGTTCCCTCAACATGGATGAATTCCTTGCCAGCATATGGAGTTCTAATGACGAAGCTACAACTCAAACTCAAAATGCTAAAAATGTTGCAACAACGGAACACACCGTTTCCCAACAACTTGGTAATTCATTCTCTGTCCCTCCTCCAATTTGGAAGAAAACTGTGGATGAAGTTTGGTCTGAGATTCATAAAAACCAACCACAATTCAAAGAAACAAATAACCTTAAAAGAAGCGAGACACTCAAGAAGCAACAAACACTTGGAGAAATGAGTTTGGAGGATTTCTTAGTAAAAGCTGGAGTAGTACAACAATCATCAGCATTGCCATTCAAGAATCATAATGGCAATGTTTCAGGTAATATGAGACCATTGAATATTGCAAGTTGTTATGGTTTGAGGCCTTCAATGGGAATGGGATTTTCTACTCAATGTGTGTCTAGAAATGGTTTTGCAACATACCAAATGTTGTCACACATTAACAACTTAGGAGTGAAGGATTTTGCTGTGGAGAAATGTCAAAGCTTGACTGAATCAAGTGGGTGTAGTAATAGGAAGAGGATAATTGATGGTCCTCCTGAAGTTGTAGTGGAGCGAAGGCAACGTAGAATGTTGAAAAATCGTGAATCGGCTGCTCGTTCTCGAGCAAGAAGACAGGCATATACATTAGAGCTAGAGGCAGAGCTGAATCTGCTAAAAGAAGAGAATCAAAAGCTAAAACAAGTTCTGGCTGAAGCTGAGACCAAGAGGAAACAAGAGCTTTTGCAACGAAAGCATTCAACAAAGGCTCAAAAGGGCGCTCAAAAATTAAGAGCAATGAGAAGGCCTATAAGCACAACCTGGTGA

Protein sequence

>Msa0323110

MALQQLDQEVPLQEQAEATFSQPSKQNSILSLTLDEFQCKSGKSFGSLNMDEFLASIWSSNDEATTQTQNAKNVATTEHTVSQQLGNSFSVPPPIWKKTVDEVWSEIHKNQPQFKETNNLKRSETLKKQQTLGEMSLEDFLVKAGVVQQSSALPFKNHNGNVSGNMRPLNIASCYGLRPSMGMGFSTQCVSRNGFATYQMLSHINNLGVKDFAVEKCQSLTESSGCSNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTLELEAELNLLKEENQKLKQVLAEAETKRKQELLQRKHSTKAQKGAQKLRAMRRPISTTW*