Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258580 | XP_003596807.1 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258580 | sp|Q8RYD6|AI5L1_ARATH | 44.444 | 333 | 154 | 9 | 7 | 325 | 16 | 331 | 2.76e-68 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258580 | G7ITR9 | 93.846 | 325 | 19 | 1 | 1 | 325 | 1 | 324 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0258580 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219040 | Msa0258580 | 0.928624 | 2.217492e-92 | -8.615850e-47 |
| Msa0258580 | Msa0298030 | 0.844741 | 6.266529e-59 | -8.615850e-47 |
| Msa0258580 | Msa0323110 | 0.906963 | 8.453096e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258580 | MtrunA17_Chr2g0321381 | 93.403 | 288 | 18 | 1 | 1 | 288 | 1 | 287 | 0.0 | 534 |
| Msa0258580 | MtrunA17_Chr2g0321411 | 67.178 | 326 | 68 | 5 | 1 | 325 | 1 | 288 | 7.34e-149 | 420 |
| Msa0258580 | MtrunA17_Chr8g0355121 | 36.972 | 284 | 132 | 11 | 25 | 285 | 26 | 285 | 2.25e-35 | 130 |
| Msa0258580 | MtrunA17_Chr3g0080341 | 36.054 | 294 | 144 | 14 | 20 | 285 | 17 | 294 | 6.33e-35 | 129 |
| Msa0258580 | MtrunA17_Chr7g0254991 | 35.526 | 304 | 149 | 12 | 12 | 286 | 8 | 293 | 3.83e-34 | 127 |
| Msa0258580 | MtrunA17_Chr7g0266211 | 47.761 | 134 | 57 | 4 | 29 | 149 | 45 | 178 | 1.89e-29 | 116 |
| Msa0258580 | MtrunA17_Chr7g0266211 | 47.093 | 172 | 59 | 5 | 168 | 322 | 272 | 428 | 6.10e-26 | 107 |
| Msa0258580 | MtrunA17_Chr6g0460301 | 36.120 | 299 | 132 | 11 | 24 | 285 | 17 | 293 | 6.77e-27 | 107 |
| Msa0258580 | MtrunA17_Chr3g0133971 | 42.748 | 131 | 60 | 6 | 24 | 151 | 28 | 146 | 7.45e-20 | 89.7 |
| Msa0258580 | MtrunA17_Chr3g0133971 | 47.525 | 101 | 41 | 3 | 229 | 325 | 339 | 431 | 1.67e-16 | 79.7 |
| Msa0258580 | MtrunA17_Chr5g0440841 | 28.364 | 275 | 148 | 7 | 14 | 285 | 13 | 241 | 1.65e-19 | 86.7 |
| Msa0258580 | MtrunA17_Chr4g0044771 | 49.451 | 91 | 36 | 2 | 236 | 325 | 295 | 376 | 1.23e-15 | 77.0 |
| Msa0258580 | MtrunA17_Chr4g0044771 | 34.559 | 136 | 69 | 4 | 24 | 151 | 19 | 142 | 6.59e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0258580 | AT3G44460.1 | 44.444 | 333 | 154 | 9 | 7 | 325 | 16 | 331 | 2.81e-69 | 219 |
| Msa0258580 | AT2G36270.1 | 35.561 | 419 | 138 | 13 | 20 | 320 | 34 | 438 | 3.93e-56 | 188 |
| Msa0258580 | AT2G36270.2 | 35.561 | 419 | 138 | 13 | 20 | 320 | 34 | 438 | 3.93e-56 | 188 |
| Msa0258580 | AT2G36270.3 | 35.623 | 393 | 125 | 11 | 20 | 298 | 34 | 412 | 3.75e-55 | 186 |
| Msa0258580 | AT3G56850.1 | 39.427 | 279 | 124 | 12 | 25 | 285 | 18 | 269 | 1.03e-40 | 144 |
| Msa0258580 | AT2G41070.5 | 35.338 | 266 | 122 | 8 | 24 | 286 | 17 | 235 | 1.58e-36 | 132 |
| Msa0258580 | AT2G41070.3 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 2.66e-36 | 132 |
| Msa0258580 | AT2G41070.1 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 2.66e-36 | 132 |
| Msa0258580 | AT2G41070.2 | 35.793 | 271 | 123 | 9 | 24 | 291 | 17 | 239 | 2.66e-36 | 132 |
| Msa0258580 | AT2G41070.4 | 35.793 | 271 | 123 | 9 | 24 | 291 | 26 | 248 | 2.98e-36 | 132 |
| Msa0258580 | AT1G49720.2 | 31.921 | 354 | 162 | 12 | 21 | 299 | 20 | 369 | 1.35e-25 | 106 |
| Msa0258580 | AT1G49720.1 | 29.016 | 386 | 180 | 13 | 21 | 325 | 20 | 392 | 4.05e-22 | 96.3 |
| Msa0258580 | AT1G49720.3 | 29.016 | 386 | 180 | 13 | 21 | 325 | 20 | 392 | 4.05e-22 | 96.3 |
| Msa0258580 | AT1G45249.7 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.07e-19 | 89.7 |
| Msa0258580 | AT1G45249.7 | 51.456 | 103 | 41 | 4 | 224 | 325 | 337 | 431 | 1.04e-15 | 77.8 |
| Msa0258580 | AT1G45249.6 | 35.294 | 153 | 88 | 2 | 24 | 165 | 37 | 189 | 1.07e-19 | 89.7 |
| Msa0258580 | AT1G45249.6 | 51.456 | 103 | 41 | 4 | 224 | 325 | 337 | 431 | 1.04e-15 | 77.8 |
| Msa0258580 | AT1G45249.1 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 1.24e-19 | 89.4 |
| Msa0258580 | AT1G45249.1 | 51.456 | 103 | 41 | 4 | 224 | 325 | 322 | 416 | 8.20e-16 | 78.2 |
| Msa0258580 | AT1G45249.3 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.00e-19 | 89.0 |
| Msa0258580 | AT1G45249.3 | 46.491 | 114 | 41 | 5 | 224 | 325 | 322 | 427 | 6.51e-13 | 69.3 |
| Msa0258580 | AT1G45249.10 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.58e-19 | 87.8 |
| Msa0258580 | AT1G45249.5 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 2.58e-19 | 87.8 |
| Msa0258580 | AT1G45249.4 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.25e-19 | 88.2 |
| Msa0258580 | AT1G45249.8 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.25e-19 | 88.2 |
| Msa0258580 | AT1G45249.2 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.25e-19 | 88.2 |
| Msa0258580 | AT1G45249.9 | 35.294 | 153 | 88 | 2 | 24 | 165 | 22 | 174 | 3.25e-19 | 88.2 |
| Msa0258580 | AT4G34000.3 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 7.10e-18 | 84.3 |
| Msa0258580 | AT4G34000.3 | 70.833 | 48 | 14 | 0 | 238 | 285 | 369 | 416 | 4.79e-14 | 72.8 |
| Msa0258580 | AT4G34000.1 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 7.51e-18 | 84.3 |
| Msa0258580 | AT4G34000.1 | 48.864 | 88 | 43 | 1 | 238 | 325 | 369 | 454 | 8.73e-16 | 78.2 |
| Msa0258580 | AT4G34000.4 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 7.51e-18 | 84.3 |
| Msa0258580 | AT4G34000.4 | 48.864 | 88 | 43 | 1 | 238 | 325 | 369 | 454 | 8.73e-16 | 78.2 |
| Msa0258580 | AT4G34000.2 | 31.532 | 222 | 96 | 6 | 24 | 201 | 28 | 237 | 7.51e-18 | 84.3 |
| Msa0258580 | AT4G34000.2 | 48.864 | 88 | 43 | 1 | 238 | 325 | 369 | 454 | 8.73e-16 | 78.2 |
| Msa0258580 | AT3G19290.1 | 48.598 | 107 | 51 | 2 | 219 | 325 | 329 | 431 | 1.14e-17 | 83.6 |
| Msa0258580 | AT3G19290.1 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.45e-16 | 80.5 |
| Msa0258580 | AT3G19290.5 | 48.598 | 107 | 51 | 2 | 219 | 325 | 329 | 431 | 1.14e-17 | 83.6 |
| Msa0258580 | AT3G19290.5 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.45e-16 | 80.5 |
| Msa0258580 | AT3G19290.3 | 48.598 | 107 | 52 | 2 | 219 | 325 | 329 | 432 | 1.81e-17 | 83.2 |
| Msa0258580 | AT3G19290.3 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.40e-16 | 80.5 |
| Msa0258580 | AT5G44080.1 | 30.000 | 230 | 125 | 6 | 98 | 325 | 120 | 315 | 9.04e-17 | 80.1 |
| Msa0258580 | AT3G19290.4 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.22e-16 | 80.5 |
| Msa0258580 | AT3G19290.4 | 55.556 | 81 | 36 | 0 | 219 | 299 | 329 | 409 | 2.24e-16 | 79.7 |
| Msa0258580 | AT3G19290.2 | 37.063 | 143 | 77 | 4 | 24 | 153 | 35 | 177 | 1.39e-16 | 80.5 |
| Msa0258580 | AT2G17770.2 | 31.100 | 209 | 117 | 8 | 100 | 301 | 1 | 189 | 2.01e-13 | 68.6 |
| Msa0258580 | AT5G42910.1 | 38.095 | 126 | 55 | 5 | 24 | 146 | 21 | 126 | 1.33e-12 | 68.2 |
| Msa0258580 | AT1G03970.1 | 26.190 | 210 | 100 | 4 | 98 | 300 | 85 | 246 | 4.45e-12 | 65.9 |
Find 63 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCACCAGGTTGTGCTTAT+AGG | 0.185713 | 2_2:+55048504 | None:intergenic |
| AATCATAATGGCAATGTTTC+AGG | 0.221412 | 2_2:-55049543 | Msa0258580:CDS |
| TCTCTGTCCCTCCTCCAATT+TGG | 0.252757 | 2_2:-55049746 | Msa0258580:CDS |
| TTGAATATTGCAAGTTGTTA+TGG | 0.294474 | 2_2:-55049507 | Msa0258580:CDS |
| AATCAAGTGGGTGTAGTAAT+AGG | 0.330386 | 2_2:-55049347 | Msa0258580:CDS |
| TCAAAAGCTAAAACAAGTTC+TGG | 0.355048 | 2_2:-55048852 | Msa0258580:intron |
| GTCATTGAGGCTTGTTCACC+AGG | 0.361408 | 2_2:+55048491 | None:intergenic |
| AACACTTGGAGAAATGAGTT+TGG | 0.378783 | 2_2:-55049622 | Msa0258580:CDS |
| GCATTCAACAAAGGCTCAAA+AGG | 0.385055 | 2_2:-55048556 | Msa0258580:CDS |
| CTTCGCTCCACTACAACTTC+AGG | 0.394469 | 2_2:+55049303 | None:intergenic |
| ACTTACCTCTTGTTTCCTCT+TGG | 0.402763 | 2_2:+55048694 | None:intergenic |
| TGTTATTGTGTGACAACATT+TGG | 0.412341 | 2_2:+55049418 | None:intergenic |
| AGAATGAATTACCAAGTTGT+TGG | 0.415586 | 2_2:+55049766 | None:intergenic |
| ACTCAATGTGTGTCTAGAAA+TGG | 0.419253 | 2_2:-55049453 | Msa0258580:CDS |
| AGCTCTTTCCACTCTTGCAT+TGG | 0.422494 | 2_2:+55049901 | None:intergenic |
| GAGGATTTCTTAGTAAAAGC+TGG | 0.422923 | 2_2:-55049600 | Msa0258580:CDS |
| TGCAAGAGTGGAAAGAGCTT+TGG | 0.423243 | 2_2:-55049897 | Msa0258580:CDS |
| ATGAATTCCTTGCCAGCATA+TGG | 0.439595 | 2_2:-55049860 | Msa0258580:CDS |
| TTGCAAGTTGTTATGGTTTG+AGG | 0.440862 | 2_2:-55049500 | Msa0258580:CDS |
| GAATGAATTACCAAGTTGTT+GGG | 0.445076 | 2_2:+55049767 | None:intergenic |
| TCTTGCATTGGAACTCATCA+AGG | 0.446472 | 2_2:+55049913 | None:intergenic |
| TTGCCATTCAAGAATCATAA+TGG | 0.446766 | 2_2:-55049555 | Msa0258580:CDS |
| TTGCCATTATGATTCTTGAA+TGG | 0.449693 | 2_2:+55049552 | None:intergenic |
| TTATGGTTTGAGGCCTTCAA+TGG | 0.451042 | 2_2:-55049490 | Msa0258580:CDS |
| GAAAATCCCATTCCCATTGA+AGG | 0.469209 | 2_2:+55049477 | None:intergenic |
| AGAAAACTGTGGATGAAGTT+TGG | 0.470434 | 2_2:-55049722 | Msa0258580:CDS |
| TTGAGGCCTTCAATGGGAAT+GGG | 0.472705 | 2_2:-55049483 | Msa0258580:CDS |
| CTCAAGAAGCAACAAACACT+TGG | 0.475735 | 2_2:-55049636 | Msa0258580:CDS |
| TTATTTGTTTCTTTGAATTG+TGG | 0.479374 | 2_2:+55049678 | None:intergenic |
| CACACCGTTTCCCAACAACT+TGG | 0.481051 | 2_2:-55049777 | Msa0258580:CDS |
| GCTTCTGCTTGTTCTTGCAA+TGG | 0.484450 | 2_2:+55049981 | None:intergenic |
| TTTGAGGCCTTCAATGGGAA+TGG | 0.489129 | 2_2:-55049484 | Msa0258580:CDS |
| ATTACCAAGTTGTTGGGAAA+CGG | 0.492082 | 2_2:+55049773 | None:intergenic |
| TTGTTTCTTTGAATTGTGGT+TGG | 0.500429 | 2_2:+55049682 | None:intergenic |
| AATAGGAAGAGGATAATTGA+TGG | 0.515045 | 2_2:-55049330 | Msa0258580:CDS |
| GTCATTAGAACTCCATATGC+TGG | 0.516405 | 2_2:+55049848 | None:intergenic |
| GTGGGTGTAGTAATAGGAAG+AGG | 0.522464 | 2_2:-55049341 | Msa0258580:CDS |
| ACTTGGAGAAATGAGTTTGG+AGG | 0.522848 | 2_2:-55049619 | Msa0258580:CDS |
| AAGGAATTCATCCATGTTGA+GGG | 0.524720 | 2_2:+55049872 | None:intergenic |
| TAACAACTTGCAATATTCAA+TGG | 0.527054 | 2_2:+55049510 | None:intergenic |
| TTGTCACACAATAACAACTT+AGG | 0.536827 | 2_2:-55049411 | Msa0258580:CDS |
| ATCTAATTGTTGTAGAGCCA+TGG | 0.537356 | 2_2:+55050013 | None:intergenic |
| TATGGTTTGAGGCCTTCAAT+GGG | 0.547796 | 2_2:-55049489 | Msa0258580:CDS |
| TCGTTCTCGAGCAAGAAGAC+AGG | 0.556810 | 2_2:-55049244 | Msa0258580:intron |
| GAGCTTTGGTTCCCTCAACA+TGG | 0.562617 | 2_2:-55049883 | Msa0258580:CDS |
| CATTCAACAAAGGCTCAAAA+GGG | 0.564482 | 2_2:-55048555 | Msa0258580:CDS |
| GGCATATACATTAGAGCTAG+AGG | 0.565644 | 2_2:-55048903 | Msa0258580:CDS |
| CAAGGAATTCATCCATGTTG+AGG | 0.566750 | 2_2:+55049871 | None:intergenic |
| TAGAACTCCATATGCTGGCA+AGG | 0.571014 | 2_2:+55049853 | None:intergenic |
| CAATAACAACTTAGGAGTGA+AGG | 0.581916 | 2_2:-55049403 | Msa0258580:CDS |
| TGGTCCTCCTGAAGTTGTAG+TGG | 0.592007 | 2_2:-55049310 | Msa0258580:CDS |
| TCTACAACAATTAGATCAAG+AGG | 0.593387 | 2_2:-55050006 | Msa0258580:CDS |
| TCCAATTTGGAAGAAAACTG+TGG | 0.593419 | 2_2:-55049733 | Msa0258580:CDS |
| GCAACGAAAGCATTCAACAA+AGG | 0.598492 | 2_2:-55048565 | Msa0258580:CDS |
| CTGAAGTTGTAGTGGAGCGA+AGG | 0.600061 | 2_2:-55049302 | Msa0258580:CDS |
| GATGAGTTCCAATGCAAGAG+TGG | 0.607955 | 2_2:-55049909 | Msa0258580:CDS |
| CTTGCATTGGAACTCATCAA+GGG | 0.629128 | 2_2:+55049914 | None:intergenic |
| CGCTCCACTACAACTTCAGG+AGG | 0.642123 | 2_2:+55049306 | None:intergenic |
| AGGCTGAAGCTGAGACCAAG+AGG | 0.647700 | 2_2:-55048709 | Msa0258580:CDS |
| TGAGACCAAGAGGAAACAAG+AGG | 0.662863 | 2_2:-55048699 | Msa0258580:intron |
| GAAGGCCTATAAGCACAACC+TGG | 0.668432 | 2_2:-55048509 | Msa0258580:CDS |
| CAAAGCTTGACTGAATCAAG+TGG | 0.677316 | 2_2:-55049360 | Msa0258580:CDS |
| AAAGCTTGACTGAATCAAGT+GGG | 0.724655 | 2_2:-55049359 | Msa0258580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCTATTTAAATATGAAAT+AGG | - | chr2_2:55049788-55049807 | Msa0258580:CDS | 10.0% |
| !! | TTTCTATTTAAATATGAAAT+AGG | - | chr2_2:55049788-55049807 | Msa0258580:CDS | 10.0% |
| !!! | ATTGCAAGATATTTTTTTAT+AGG | + | chr2_2:55049591-55049610 | None:intergenic | 15.0% |
| !!! | AAGTTGATATTTATATAACA+AGG | - | chr2_2:55049869-55049888 | Msa0258580:CDS | 15.0% |
| !!! | AGTTGATATTTATATAACAA+GGG | - | chr2_2:55049870-55049889 | Msa0258580:CDS | 15.0% |
| !!! | ATTGCAAGATATTTTTTTAT+AGG | + | chr2_2:55049591-55049610 | None:intergenic | 15.0% |
| !!! | AAGTTGATATTTATATAACA+AGG | - | chr2_2:55049869-55049888 | Msa0258580:CDS | 15.0% |
| !!! | AGTTGATATTTATATAACAA+GGG | - | chr2_2:55049870-55049889 | Msa0258580:CDS | 15.0% |
| !!! | TTATTTGTTTCTTTGAATTG+TGG | + | chr2_2:55048842-55048861 | None:intergenic | 20.0% |
| !!! | AAAATGCAGGTTTTAAAAAA+AGG | + | chr2_2:55049445-55049464 | None:intergenic | 20.0% |
| !!! | TTATTTGTTTCTTTGAATTG+TGG | + | chr2_2:55048842-55048861 | None:intergenic | 20.0% |
| !!! | AAAATGCAGGTTTTAAAAAA+AGG | + | chr2_2:55049445-55049464 | None:intergenic | 20.0% |
| ! | TAACAACTTGCAATATTCAA+TGG | + | chr2_2:55049010-55049029 | None:intergenic | 25.0% |
| ! | TTGAATATTGCAAGTTGTTA+TGG | - | chr2_2:55049010-55049029 | Msa0258580:intron | 25.0% |
| ! | AATGTTGAAAAATCGTGAAT+CGG | - | chr2_2:55049246-55049265 | Msa0258580:CDS | 25.0% |
| !! | CTTTGTTATAGTTCTATGTT+AGG | - | chr2_2:55049320-55049339 | Msa0258580:CDS | 25.0% |
| ! | CTTGATTTCGCAATAAATTA+TGG | - | chr2_2:55049381-55049400 | Msa0258580:CDS | 25.0% |
| ! | AAAAAAATATCTTGCAATGC+AGG | - | chr2_2:55049593-55049612 | Msa0258580:CDS | 25.0% |
| !!! | TTCTTGTTTTTGTTTCTTCA+TGG | - | chr2_2:55049738-55049757 | Msa0258580:CDS | 25.0% |
| ! | AAAAATTAAGAGCAATGAGA+AGG | - | chr2_2:55049990-55050009 | Msa0258580:CDS | 25.0% |
| ! | TAACAACTTGCAATATTCAA+TGG | + | chr2_2:55049010-55049029 | None:intergenic | 25.0% |
| ! | TTGAATATTGCAAGTTGTTA+TGG | - | chr2_2:55049010-55049029 | Msa0258580:intron | 25.0% |
| ! | AATGTTGAAAAATCGTGAAT+CGG | - | chr2_2:55049246-55049265 | Msa0258580:CDS | 25.0% |
| !! | CTTTGTTATAGTTCTATGTT+AGG | - | chr2_2:55049320-55049339 | Msa0258580:CDS | 25.0% |
| ! | CTTGATTTCGCAATAAATTA+TGG | - | chr2_2:55049381-55049400 | Msa0258580:CDS | 25.0% |
| ! | AAAAAAATATCTTGCAATGC+AGG | - | chr2_2:55049593-55049612 | Msa0258580:CDS | 25.0% |
| !!! | TTCTTGTTTTTGTTTCTTCA+TGG | - | chr2_2:55049738-55049757 | Msa0258580:CDS | 25.0% |
| ! | AAAAATTAAGAGCAATGAGA+AGG | - | chr2_2:55049990-55050009 | Msa0258580:CDS | 25.0% |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_2:55048511-55048530 | Msa0258580:CDS | 30.0% | |
| !!! | AGTATTGAGTTTTGTTTGCT+TGG | + | chr2_2:55048575-55048594 | None:intergenic | 30.0% |
| TGCTAAAAATGTTGCAACAA+CGG | - | chr2_2:55048715-55048734 | Msa0258580:intron | 30.0% | |
| GAATGAATTACCAAGTTGTT+GGG | + | chr2_2:55048753-55048772 | None:intergenic | 30.0% | |
| AGAATGAATTACCAAGTTGT+TGG | + | chr2_2:55048754-55048773 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTTGAATTGTGGT+TGG | + | chr2_2:55048838-55048857 | None:intergenic | 30.0% |
| TTGCCATTCAAGAATCATAA+TGG | - | chr2_2:55048962-55048981 | Msa0258580:intron | 30.0% | |
| TTGCCATTATGATTCTTGAA+TGG | + | chr2_2:55048968-55048987 | None:intergenic | 30.0% | |
| AATCATAATGGCAATGTTTC+AGG | - | chr2_2:55048974-55048993 | Msa0258580:intron | 30.0% | |
| TGTTATTGTGTGACAACATT+TGG | + | chr2_2:55049102-55049121 | None:intergenic | 30.0% | |
| TTGTCACACAATAACAACTT+AGG | - | chr2_2:55049106-55049125 | Msa0258580:intron | 30.0% | |
| AATAGGAAGAGGATAATTGA+TGG | - | chr2_2:55049187-55049206 | Msa0258580:intron | 30.0% | |
| CATAGAACTATAACAAAGAG+TGG | + | chr2_2:55049318-55049337 | None:intergenic | 30.0% | |
| TAATGTGAATCACAAAATGC+AGG | + | chr2_2:55049458-55049477 | None:intergenic | 30.0% | |
| TCAAAAGCTAAAACAAGTTC+TGG | - | chr2_2:55049665-55049684 | Msa0258580:CDS | 30.0% | |
| TCTACAACAATTAGATCAAG+AGG | - | chr2_2:55048511-55048530 | Msa0258580:CDS | 30.0% | |
| !!! | AGTATTGAGTTTTGTTTGCT+TGG | + | chr2_2:55048575-55048594 | None:intergenic | 30.0% |
| TGCTAAAAATGTTGCAACAA+CGG | - | chr2_2:55048715-55048734 | Msa0258580:intron | 30.0% | |
| GAATGAATTACCAAGTTGTT+GGG | + | chr2_2:55048753-55048772 | None:intergenic | 30.0% | |
| AGAATGAATTACCAAGTTGT+TGG | + | chr2_2:55048754-55048773 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTTGAATTGTGGT+TGG | + | chr2_2:55048838-55048857 | None:intergenic | 30.0% |
| TTGCCATTCAAGAATCATAA+TGG | - | chr2_2:55048962-55048981 | Msa0258580:intron | 30.0% | |
| TTGCCATTATGATTCTTGAA+TGG | + | chr2_2:55048968-55048987 | None:intergenic | 30.0% | |
| AATCATAATGGCAATGTTTC+AGG | - | chr2_2:55048974-55048993 | Msa0258580:intron | 30.0% | |
| TGTTATTGTGTGACAACATT+TGG | + | chr2_2:55049102-55049121 | None:intergenic | 30.0% | |
| TTGTCACACAATAACAACTT+AGG | - | chr2_2:55049106-55049125 | Msa0258580:intron | 30.0% | |
| AATAGGAAGAGGATAATTGA+TGG | - | chr2_2:55049187-55049206 | Msa0258580:intron | 30.0% | |
| CATAGAACTATAACAAAGAG+TGG | + | chr2_2:55049318-55049337 | None:intergenic | 30.0% | |
| TAATGTGAATCACAAAATGC+AGG | + | chr2_2:55049458-55049477 | None:intergenic | 30.0% | |
| TCAAAAGCTAAAACAAGTTC+TGG | - | chr2_2:55049665-55049684 | Msa0258580:CDS | 30.0% | |
| AAGGAATTCATCCATGTTGA+GGG | + | chr2_2:55048648-55048667 | None:intergenic | 35.0% | |
| ATTACCAAGTTGTTGGGAAA+CGG | + | chr2_2:55048747-55048766 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCAAATTGGAGGA+GGG | + | chr2_2:55048781-55048800 | None:intergenic | 35.0% |
| ! | ACAGTTTTCTTCCAAATTGG+AGG | + | chr2_2:55048785-55048804 | None:intergenic | 35.0% |
| TCCAATTTGGAAGAAAACTG+TGG | - | chr2_2:55048784-55048803 | Msa0258580:intron | 35.0% | |
| ! | TCCACAGTTTTCTTCCAAAT+TGG | + | chr2_2:55048788-55048807 | None:intergenic | 35.0% |
| AGAAAACTGTGGATGAAGTT+TGG | - | chr2_2:55048795-55048814 | Msa0258580:intron | 35.0% | |
| AACACTTGGAGAAATGAGTT+TGG | - | chr2_2:55048895-55048914 | Msa0258580:CDS | 35.0% | |
| GAGGATTTCTTAGTAAAAGC+TGG | - | chr2_2:55048917-55048936 | Msa0258580:intron | 35.0% | |
| TTGCAAGTTGTTATGGTTTG+AGG | - | chr2_2:55049017-55049036 | Msa0258580:intron | 35.0% | |
| ACTCAATGTGTGTCTAGAAA+TGG | - | chr2_2:55049064-55049083 | Msa0258580:intron | 35.0% | |
| CAATAACAACTTAGGAGTGA+AGG | - | chr2_2:55049114-55049133 | Msa0258580:intron | 35.0% | |
| AAAGCTTGACTGAATCAAGT+GGG | - | chr2_2:55049158-55049177 | Msa0258580:intron | 35.0% | |
| AATCAAGTGGGTGTAGTAAT+AGG | - | chr2_2:55049170-55049189 | Msa0258580:intron | 35.0% | |
| TGTGATTCACATTAAGCTCA+AGG | - | chr2_2:55049464-55049483 | Msa0258580:CDS | 35.0% | |
| TGTTAAGGCAACCTAAATTG+TGG | + | chr2_2:55049510-55049529 | None:intergenic | 35.0% | |
| ATGTTAGCAACTAGTTACCA+AGG | + | chr2_2:55049565-55049584 | None:intergenic | 35.0% | |
| CATTCAACAAAGGCTCAAAA+GGG | - | chr2_2:55049962-55049981 | Msa0258580:CDS | 35.0% | |
| AAGGAATTCATCCATGTTGA+GGG | + | chr2_2:55048648-55048667 | None:intergenic | 35.0% | |
| ATTACCAAGTTGTTGGGAAA+CGG | + | chr2_2:55048747-55048766 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCAAATTGGAGGA+GGG | + | chr2_2:55048781-55048800 | None:intergenic | 35.0% |
| ! | ACAGTTTTCTTCCAAATTGG+AGG | + | chr2_2:55048785-55048804 | None:intergenic | 35.0% |
| TCCAATTTGGAAGAAAACTG+TGG | - | chr2_2:55048784-55048803 | Msa0258580:intron | 35.0% | |
| ! | TCCACAGTTTTCTTCCAAAT+TGG | + | chr2_2:55048788-55048807 | None:intergenic | 35.0% |
| AGAAAACTGTGGATGAAGTT+TGG | - | chr2_2:55048795-55048814 | Msa0258580:intron | 35.0% | |
| AACACTTGGAGAAATGAGTT+TGG | - | chr2_2:55048895-55048914 | Msa0258580:CDS | 35.0% | |
| GAGGATTTCTTAGTAAAAGC+TGG | - | chr2_2:55048917-55048936 | Msa0258580:intron | 35.0% | |
| TTGCAAGTTGTTATGGTTTG+AGG | - | chr2_2:55049017-55049036 | Msa0258580:intron | 35.0% | |
| ACTCAATGTGTGTCTAGAAA+TGG | - | chr2_2:55049064-55049083 | Msa0258580:intron | 35.0% | |
| CAATAACAACTTAGGAGTGA+AGG | - | chr2_2:55049114-55049133 | Msa0258580:intron | 35.0% | |
| AAAGCTTGACTGAATCAAGT+GGG | - | chr2_2:55049158-55049177 | Msa0258580:intron | 35.0% | |
| AATCAAGTGGGTGTAGTAAT+AGG | - | chr2_2:55049170-55049189 | Msa0258580:intron | 35.0% | |
| TGTGATTCACATTAAGCTCA+AGG | - | chr2_2:55049464-55049483 | Msa0258580:CDS | 35.0% | |
| TGTTAAGGCAACCTAAATTG+TGG | + | chr2_2:55049510-55049529 | None:intergenic | 35.0% | |
| ATGTTAGCAACTAGTTACCA+AGG | + | chr2_2:55049565-55049584 | None:intergenic | 35.0% | |
| CATTCAACAAAGGCTCAAAA+GGG | - | chr2_2:55049962-55049981 | Msa0258580:CDS | 35.0% | |
| CTTGCATTGGAACTCATCAA+GGG | + | chr2_2:55048606-55048625 | None:intergenic | 40.0% | |
| TCTTGCATTGGAACTCATCA+AGG | + | chr2_2:55048607-55048626 | None:intergenic | 40.0% | |
| CAAGGAATTCATCCATGTTG+AGG | + | chr2_2:55048649-55048668 | None:intergenic | 40.0% | |
| ATGAATTCCTTGCCAGCATA+TGG | - | chr2_2:55048657-55048676 | Msa0258580:intron | 40.0% | |
| GTCATTAGAACTCCATATGC+TGG | + | chr2_2:55048672-55048691 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCAAATTGGAGG+AGG | + | chr2_2:55048782-55048801 | None:intergenic | 40.0% |
| ! | TGAGTGTCTCGCTTCTTTTA+AGG | + | chr2_2:55048865-55048884 | None:intergenic | 40.0% |
| CTCAAGAAGCAACAAACACT+TGG | - | chr2_2:55048881-55048900 | Msa0258580:CDS | 40.0% | |
| ACTTGGAGAAATGAGTTTGG+AGG | - | chr2_2:55048898-55048917 | Msa0258580:CDS | 40.0% | |
| ! | TTATGGTTTGAGGCCTTCAA+TGG | - | chr2_2:55049027-55049046 | Msa0258580:intron | 40.0% |
| ! | TATGGTTTGAGGCCTTCAAT+GGG | - | chr2_2:55049028-55049047 | Msa0258580:intron | 40.0% |
| GAAAATCCCATTCCCATTGA+AGG | + | chr2_2:55049043-55049062 | None:intergenic | 40.0% | |
| CAAAGCTTGACTGAATCAAG+TGG | - | chr2_2:55049157-55049176 | Msa0258580:intron | 40.0% | |
| AAATTATGGTCGAATGCGAC+AGG | - | chr2_2:55049395-55049414 | Msa0258580:CDS | 40.0% | |
| TACGTCTGTGACCACAATTT+AGG | - | chr2_2:55049496-55049515 | Msa0258580:CDS | 40.0% | |
| TTGTACCAGACATGATATGG+CGG | + | chr2_2:55049541-55049560 | None:intergenic | 40.0% | |
| GGTTTGTACCAGACATGATA+TGG | + | chr2_2:55049544-55049563 | None:intergenic | 40.0% | |
| ATCATGTCTGGTACAAACCT+TGG | - | chr2_2:55049545-55049564 | Msa0258580:CDS | 40.0% | |
| GGCATATACATTAGAGCTAG+AGG | - | chr2_2:55049614-55049633 | Msa0258580:CDS | 40.0% | |
| ! | ACTTACCTCTTGTTTCCTCT+TGG | + | chr2_2:55049826-55049845 | None:intergenic | 40.0% |
| !! | GCAACGAAAGCATTCAACAA+AGG | - | chr2_2:55049952-55049971 | Msa0258580:CDS | 40.0% |
| GCATTCAACAAAGGCTCAAA+AGG | - | chr2_2:55049961-55049980 | Msa0258580:CDS | 40.0% | |
| CTTGCATTGGAACTCATCAA+GGG | + | chr2_2:55048606-55048625 | None:intergenic | 40.0% | |
| TCTTGCATTGGAACTCATCA+AGG | + | chr2_2:55048607-55048626 | None:intergenic | 40.0% | |
| CAAGGAATTCATCCATGTTG+AGG | + | chr2_2:55048649-55048668 | None:intergenic | 40.0% | |
| ATGAATTCCTTGCCAGCATA+TGG | - | chr2_2:55048657-55048676 | Msa0258580:intron | 40.0% | |
| GTCATTAGAACTCCATATGC+TGG | + | chr2_2:55048672-55048691 | None:intergenic | 40.0% | |
| ! | GTTTTCTTCCAAATTGGAGG+AGG | + | chr2_2:55048782-55048801 | None:intergenic | 40.0% |
| ! | TGAGTGTCTCGCTTCTTTTA+AGG | + | chr2_2:55048865-55048884 | None:intergenic | 40.0% |
| CTCAAGAAGCAACAAACACT+TGG | - | chr2_2:55048881-55048900 | Msa0258580:CDS | 40.0% | |
| ACTTGGAGAAATGAGTTTGG+AGG | - | chr2_2:55048898-55048917 | Msa0258580:CDS | 40.0% | |
| ! | TTATGGTTTGAGGCCTTCAA+TGG | - | chr2_2:55049027-55049046 | Msa0258580:intron | 40.0% |
| ! | TATGGTTTGAGGCCTTCAAT+GGG | - | chr2_2:55049028-55049047 | Msa0258580:intron | 40.0% |
| GAAAATCCCATTCCCATTGA+AGG | + | chr2_2:55049043-55049062 | None:intergenic | 40.0% | |
| CAAAGCTTGACTGAATCAAG+TGG | - | chr2_2:55049157-55049176 | Msa0258580:intron | 40.0% | |
| AAATTATGGTCGAATGCGAC+AGG | - | chr2_2:55049395-55049414 | Msa0258580:CDS | 40.0% | |
| TACGTCTGTGACCACAATTT+AGG | - | chr2_2:55049496-55049515 | Msa0258580:CDS | 40.0% | |
| TTGTACCAGACATGATATGG+CGG | + | chr2_2:55049541-55049560 | None:intergenic | 40.0% | |
| GGTTTGTACCAGACATGATA+TGG | + | chr2_2:55049544-55049563 | None:intergenic | 40.0% | |
| ATCATGTCTGGTACAAACCT+TGG | - | chr2_2:55049545-55049564 | Msa0258580:CDS | 40.0% | |
| GGCATATACATTAGAGCTAG+AGG | - | chr2_2:55049614-55049633 | Msa0258580:CDS | 40.0% | |
| ! | ACTTACCTCTTGTTTCCTCT+TGG | + | chr2_2:55049826-55049845 | None:intergenic | 40.0% |
| !! | GCAACGAAAGCATTCAACAA+AGG | - | chr2_2:55049952-55049971 | Msa0258580:CDS | 40.0% |
| GCATTCAACAAAGGCTCAAA+AGG | - | chr2_2:55049961-55049980 | Msa0258580:CDS | 40.0% | |
| GCTTCTGCTTGTTCTTGCAA+TGG | + | chr2_2:55048539-55048558 | None:intergenic | 45.0% | |
| GATGAGTTCCAATGCAAGAG+TGG | - | chr2_2:55048608-55048627 | Msa0258580:intron | 45.0% | |
| AGCTCTTTCCACTCTTGCAT+TGG | + | chr2_2:55048619-55048638 | None:intergenic | 45.0% | |
| TGCAAGAGTGGAAAGAGCTT+TGG | - | chr2_2:55048620-55048639 | Msa0258580:intron | 45.0% | |
| TAGAACTCCATATGCTGGCA+AGG | + | chr2_2:55048667-55048686 | None:intergenic | 45.0% | |
| ! | TTTGAGGCCTTCAATGGGAA+TGG | - | chr2_2:55049033-55049052 | Msa0258580:intron | 45.0% |
| TTGAGGCCTTCAATGGGAAT+GGG | - | chr2_2:55049034-55049053 | Msa0258580:intron | 45.0% | |
| ! | AGGAGTGAAGGATTTTGCTG+TGG | - | chr2_2:55049126-55049145 | Msa0258580:intron | 45.0% |
| GTGGGTGTAGTAATAGGAAG+AGG | - | chr2_2:55049176-55049195 | Msa0258580:intron | 45.0% | |
| ATGGCGGTCAAATGCTGTTA+AGG | + | chr2_2:55049525-55049544 | None:intergenic | 45.0% | |
| TTTGACCGCCATATCATGTC+TGG | - | chr2_2:55049533-55049552 | Msa0258580:CDS | 45.0% | |
| TGAGACCAAGAGGAAACAAG+AGG | - | chr2_2:55049818-55049837 | Msa0258580:CDS | 45.0% | |
| GCTTCTGCTTGTTCTTGCAA+TGG | + | chr2_2:55048539-55048558 | None:intergenic | 45.0% | |
| GATGAGTTCCAATGCAAGAG+TGG | - | chr2_2:55048608-55048627 | Msa0258580:intron | 45.0% | |
| AGCTCTTTCCACTCTTGCAT+TGG | + | chr2_2:55048619-55048638 | None:intergenic | 45.0% | |
| TGCAAGAGTGGAAAGAGCTT+TGG | - | chr2_2:55048620-55048639 | Msa0258580:intron | 45.0% | |
| TAGAACTCCATATGCTGGCA+AGG | + | chr2_2:55048667-55048686 | None:intergenic | 45.0% | |
| ! | TTTGAGGCCTTCAATGGGAA+TGG | - | chr2_2:55049033-55049052 | Msa0258580:intron | 45.0% |
| TTGAGGCCTTCAATGGGAAT+GGG | - | chr2_2:55049034-55049053 | Msa0258580:intron | 45.0% | |
| ! | AGGAGTGAAGGATTTTGCTG+TGG | - | chr2_2:55049126-55049145 | Msa0258580:intron | 45.0% |
| GTGGGTGTAGTAATAGGAAG+AGG | - | chr2_2:55049176-55049195 | Msa0258580:intron | 45.0% | |
| ATGGCGGTCAAATGCTGTTA+AGG | + | chr2_2:55049525-55049544 | None:intergenic | 45.0% | |
| TTTGACCGCCATATCATGTC+TGG | - | chr2_2:55049533-55049552 | Msa0258580:CDS | 45.0% | |
| TGAGACCAAGAGGAAACAAG+AGG | - | chr2_2:55049818-55049837 | Msa0258580:CDS | 45.0% | |
| ! | GAGCTTTGGTTCCCTCAACA+TGG | - | chr2_2:55048634-55048653 | Msa0258580:intron | 50.0% |
| CACACCGTTTCCCAACAACT+TGG | - | chr2_2:55048740-55048759 | Msa0258580:intron | 50.0% | |
| TCTCTGTCCCTCCTCCAATT+TGG | - | chr2_2:55048771-55048790 | Msa0258580:intron | 50.0% | |
| TGGTCCTCCTGAAGTTGTAG+TGG | - | chr2_2:55049207-55049226 | Msa0258580:intron | 50.0% | |
| CTTCGCTCCACTACAACTTC+AGG | + | chr2_2:55049217-55049236 | None:intergenic | 50.0% | |
| ! | CTGAAGTTGTAGTGGAGCGA+AGG | - | chr2_2:55049215-55049234 | Msa0258580:intron | 50.0% |
| TCGTTCTCGAGCAAGAAGAC+AGG | - | chr2_2:55049273-55049292 | Msa0258580:CDS | 50.0% | |
| GAATTGTGAAGCGACAGCGA+AGG | + | chr2_2:55049362-55049381 | None:intergenic | 50.0% | |
| GAAGGCCTATAAGCACAACC+TGG | - | chr2_2:55050008-55050027 | Msa0258580:CDS | 50.0% | |
| ! | GAGCTTTGGTTCCCTCAACA+TGG | - | chr2_2:55048634-55048653 | Msa0258580:intron | 50.0% |
| CACACCGTTTCCCAACAACT+TGG | - | chr2_2:55048740-55048759 | Msa0258580:intron | 50.0% | |
| TCTCTGTCCCTCCTCCAATT+TGG | - | chr2_2:55048771-55048790 | Msa0258580:intron | 50.0% | |
| TGGTCCTCCTGAAGTTGTAG+TGG | - | chr2_2:55049207-55049226 | Msa0258580:intron | 50.0% | |
| CTTCGCTCCACTACAACTTC+AGG | + | chr2_2:55049217-55049236 | None:intergenic | 50.0% | |
| ! | CTGAAGTTGTAGTGGAGCGA+AGG | - | chr2_2:55049215-55049234 | Msa0258580:intron | 50.0% |
| TCGTTCTCGAGCAAGAAGAC+AGG | - | chr2_2:55049273-55049292 | Msa0258580:CDS | 50.0% | |
| GAATTGTGAAGCGACAGCGA+AGG | + | chr2_2:55049362-55049381 | None:intergenic | 50.0% | |
| GAAGGCCTATAAGCACAACC+TGG | - | chr2_2:55050008-55050027 | Msa0258580:CDS | 50.0% | |
| CGCTCCACTACAACTTCAGG+AGG | + | chr2_2:55049214-55049233 | None:intergenic | 55.0% | |
| GACAGGTTCAGCCTCGATCA+CGG | - | chr2_2:55049412-55049431 | Msa0258580:CDS | 55.0% | |
| AAGGTCTGTGACCGTGATCG+AGG | + | chr2_2:55049426-55049445 | None:intergenic | 55.0% | |
| AGGCTGAAGCTGAGACCAAG+AGG | - | chr2_2:55049808-55049827 | Msa0258580:CDS | 55.0% | |
| CGCTCCACTACAACTTCAGG+AGG | + | chr2_2:55049214-55049233 | None:intergenic | 55.0% | |
| GACAGGTTCAGCCTCGATCA+CGG | - | chr2_2:55049412-55049431 | Msa0258580:CDS | 55.0% | |
| AAGGTCTGTGACCGTGATCG+AGG | + | chr2_2:55049426-55049445 | None:intergenic | 55.0% | |
| AGGCTGAAGCTGAGACCAAG+AGG | - | chr2_2:55049808-55049827 | Msa0258580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 55048506 | 55050033 | 55048506 | ID=Msa0258580;Name=Msa0258580 |
| chr2_2 | mRNA | 55048506 | 55050033 | 55048506 | ID=Msa0258580-mRNA-1;Parent=Msa0258580;Name=Msa0258580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|325 |
| chr2_2 | exon | 55049245 | 55050033 | 55049245 | ID=Msa0258580-mRNA-1:exon:16632;Parent=Msa0258580-mRNA-1 |
| chr2_2 | exon | 55048853 | 55048924 | 55048853 | ID=Msa0258580-mRNA-1:exon:16631;Parent=Msa0258580-mRNA-1 |
| chr2_2 | exon | 55048700 | 55048729 | 55048700 | ID=Msa0258580-mRNA-1:exon:16630;Parent=Msa0258580-mRNA-1 |
| chr2_2 | exon | 55048506 | 55048592 | 55048506 | ID=Msa0258580-mRNA-1:exon:16629;Parent=Msa0258580-mRNA-1 |
| chr2_2 | CDS | 55049245 | 55050033 | 55049245 | ID=Msa0258580-mRNA-1:cds;Parent=Msa0258580-mRNA-1 |
| chr2_2 | CDS | 55048853 | 55048924 | 55048853 | ID=Msa0258580-mRNA-1:cds;Parent=Msa0258580-mRNA-1 |
| chr2_2 | CDS | 55048700 | 55048729 | 55048700 | ID=Msa0258580-mRNA-1:cds;Parent=Msa0258580-mRNA-1 |
| chr2_2 | CDS | 55048506 | 55048592 | 55048506 | ID=Msa0258580-mRNA-1:cds;Parent=Msa0258580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
