AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219790 MtrunA17_Chr2g0323011 94.309 246 14 0 1 246 1 246 1.71e-175 482
Msa0219790 MtrunA17_Chr2g0322981 74.797 246 62 0 1 246 1 246 3.14e-128 362
Msa0219790 MtrunA17_Chr7g0234231 36.797 231 142 2 14 243 9 236 2.15e-52 170
Msa0219790 MtrunA17_Chr1g0206531 38.525 244 141 6 6 243 9 249 1.17e-49 172
Msa0219790 MtrunA17_Chr6g0474901 37.900 219 130 2 32 245 27 244 1.92e-45 162
Msa0219790 MtrunA17_Chr6g0474901 38.235 170 102 2 77 243 313 482 4.38e-33 126
Msa0219790 MtrunA17_Chr5g0428591 38.208 212 125 3 35 243 35 243 2.83e-45 152
Msa0219790 MtrunA17_Chr6g0475001 38.340 253 146 6 1 245 1 251 9.91e-45 159
Msa0219790 MtrunA17_Chr6g0475001 38.506 174 99 3 78 246 321 491 2.99e-31 121
Msa0219790 MtrunA17_Chr1g0206351 39.189 222 128 4 29 245 35 254 7.63e-43 153
Msa0219790 MtrunA17_Chr1g0206291 33.071 254 160 6 1 245 13 265 3.03e-41 147
Msa0219790 MtrunA17_Chr6g0474811 37.452 259 141 7 1 245 1 252 4.54e-39 144
Msa0219790 MtrunA17_Chr6g0474811 33.778 225 139 4 22 243 274 491 4.81e-31 120
Msa0219790 MtrunA17_Chr1g0206461 34.836 244 152 6 4 243 6 246 1.89e-38 141
Msa0219790 MtrunA17_Chr1g0154311 34.137 249 151 6 1 239 1 246 1.97e-38 141
Msa0219790 MtrunA17_Chr3g0081001 31.837 245 161 3 1 245 8 246 4.38e-38 140
Msa0219790 MtrunA17_Chr6g0475091 37.615 218 131 1 33 245 43 260 5.05e-38 140
Msa0219790 MtrunA17_Chr6g0475091 36.181 199 119 3 48 243 305 498 5.54e-34 129
Msa0219790 MtrunA17_Chr6g0474871 34.630 257 148 4 1 245 1 249 1.52e-37 139
Msa0219790 MtrunA17_Chr6g0474871 33.333 228 142 4 22 246 269 489 8.65e-34 129
Msa0219790 MtrunA17_Chr1g0206571 34.703 219 132 6 30 239 35 251 1.80e-37 133
Msa0219790 MtrunA17_Chr1g0154361 33.871 248 149 7 6 243 8 250 2.81e-37 133
Msa0219790 MtrunA17_Chr3g0081011 33.175 211 139 2 33 243 35 243 3.39e-37 138
Msa0219790 MtrunA17_Chr1g0154371 35.802 243 141 8 6 239 24 260 3.82e-37 137
Msa0219790 MtrunA17_Chr1g0206521 38.532 218 128 5 29 243 33 247 4.66e-37 138
Msa0219790 MtrunA17_Chr1g0206521 36.735 245 147 5 4 243 648 889 6.33e-37 137
Msa0219790 MtrunA17_Chr3g0081031 33.333 213 138 3 33 243 47 257 6.69e-37 137
Msa0219790 MtrunA17_Chr1g0205771 33.641 217 142 1 32 246 44 260 1.05e-36 136
Msa0219790 MtrunA17_Chr5g0394001 34.016 244 156 3 4 243 6 248 1.11e-36 136
Msa0219790 MtrunA17_Chr6g0474971 34.071 226 129 4 32 245 27 244 1.12e-36 131
Msa0219790 MtrunA17_Chr3g0081051 30.364 247 162 5 1 244 1 240 1.33e-36 129
Msa0219790 MtrunA17_Chr6g0475111 34.426 244 154 5 5 243 9 251 1.63e-36 136
Msa0219790 MtrunA17_Chr6g0475111 34.529 223 135 4 29 246 287 503 1.24e-34 131
Msa0219790 MtrunA17_Chr8g0347571 38.462 169 100 1 75 243 77 241 2.29e-36 136
Msa0219790 MtrunA17_Chr8g0347571 34.615 234 139 5 21 246 262 489 6.49e-34 129
Msa0219790 MtrunA17_Chr6g0475201 35.772 246 144 6 6 245 13 250 2.66e-36 135
Msa0219790 MtrunA17_Chr6g0475201 38.922 167 99 2 80 243 323 489 4.81e-33 126
Msa0219790 MtrunA17_Chr5g0428531 32.794 247 144 6 10 243 9 246 3.28e-36 130
Msa0219790 MtrunA17_Chr5g0394021 34.286 245 152 5 3 243 7 246 6.44e-36 134
Msa0219790 MtrunA17_Chr1g0206361 35.242 227 138 5 23 243 29 252 7.24e-36 134
Msa0219790 MtrunA17_Chr5g0428571 36.792 212 128 3 35 243 36 244 7.94e-36 133
Msa0219790 MtrunA17_Chr1g0154341 33.200 250 146 9 7 239 1 246 1.61e-35 127
Msa0219790 MtrunA17_Chr1g0206601 32.400 250 150 9 7 239 22 269 3.61e-35 127
Msa0219790 MtrunA17_Chr8g0354421 30.041 243 166 2 4 243 27 268 4.87e-35 132
Msa0219790 MtrunA17_Chr5g0393981 39.024 205 112 5 47 243 117 316 8.86e-35 131
Msa0219790 MtrunA17_Chr5g0394011 32.227 211 136 5 39 243 41 250 1.17e-34 130
Msa0219790 MtrunA17_Chr6g0475121 36.723 177 105 2 75 245 76 251 3.78e-34 129
Msa0219790 MtrunA17_Chr6g0475121 36.527 167 103 2 80 243 323 489 4.15e-31 120
Msa0219790 MtrunA17_Chr6g0475121 27.273 253 141 8 16 238 131 370 8.81e-15 73.2
Msa0219790 MtrunA17_Chr6g0474861 34.274 248 158 5 1 246 1 245 1.04e-33 127
Msa0219790 MtrunA17_Chr8g0354351 29.752 242 162 5 1 239 1 237 2.22e-33 127
Msa0219790 MtrunA17_Chr1g0206201 30.364 247 170 2 1 245 8 254 4.16e-33 121
Msa0219790 MtrunA17_Chr1g0206231 33.945 218 142 2 30 245 37 254 7.28e-33 125
Msa0219790 MtrunA17_Chr1g0206651 30.952 252 160 6 3 243 1 249 1.03e-32 119
Msa0219790 MtrunA17_Chr1g0206451 35.628 247 150 6 4 243 40 284 1.56e-32 125
Msa0219790 MtrunA17_Chr1g0206331 34.389 221 130 6 33 243 36 251 9.54e-32 122
Msa0219790 MtrunA17_Chr1g0206561 34.199 231 143 7 18 243 11 237 1.31e-31 122
Msa0219790 MtrunA17_Chr1g0154351 32.922 243 148 7 6 239 10 246 5.94e-31 120
Msa0219790 MtrunA17_Chr2g0280391 32.500 200 129 4 45 243 51 245 2.81e-30 114
Msa0219790 MtrunA17_Chr2g0280361 31.156 199 131 4 46 243 47 240 6.18e-30 112
Msa0219790 MtrunA17_Chr8g0354411 27.064 218 155 2 29 243 30 246 1.61e-29 112
Msa0219790 MtrunA17_Chr8g0354341 31.308 214 142 3 29 239 29 240 1.84e-29 111
Msa0219790 MtrunA17_Chr1g0206251 33.333 234 139 6 20 243 282 508 2.03e-29 115
Msa0219790 MtrunA17_Chr1g0206251 31.638 177 108 4 80 245 91 265 8.69e-17 79.3
Msa0219790 MtrunA17_Chr8g0354441 28.512 242 158 3 10 239 12 250 1.94e-28 113
Msa0219790 MtrunA17_Chr1g0154321 33.641 217 130 7 34 239 37 250 3.09e-28 112
Msa0219790 MtrunA17_Chr8g0354271 31.925 213 140 4 33 243 38 247 2.03e-27 110
Msa0219790 MtrunA17_Chr8g0354281 29.032 217 151 3 29 243 30 245 1.24e-25 105
Msa0219790 MtrunA17_Chr8g0354431 29.464 224 148 4 29 246 30 249 1.69e-25 104
Msa0219790 MtrunA17_Chr1g0206401 31.416 226 138 7 30 245 29 247 2.63e-25 104
Msa0219790 MtrunA17_Chr7g0230381 30.417 240 141 9 7 238 20 241 2.68e-24 97.8
Msa0219790 MtrunA17_Chr3g0119041 33.333 231 135 4 33 246 35 263 4.67e-24 100
Msa0219790 MtrunA17_Chr5g0426941 29.464 224 150 4 26 243 18 239 1.37e-23 99.4
Msa0219790 MtrunA17_Chr2g0280381 28.216 241 158 7 6 243 11 239 3.24e-23 95.1
Msa0219790 MtrunA17_Chr1g0206381 29.515 227 145 6 30 245 30 252 1.11e-22 94.7
Msa0219790 MtrunA17_Chr1g0206581 24.427 262 164 7 1 238 21 272 2.01e-19 85.1
Msa0219790 MtrunA17_Chr3g0110311 28.866 194 124 3 45 238 42 221 4.07e-19 84.0
Msa0219790 MtrunA17_Chr5g0434531 27.391 230 156 3 9 238 8 226 1.64e-18 82.4
Msa0219790 MtrunA17_Chr5g0428601 38.525 122 72 2 124 243 1 121 3.09e-18 82.8
Msa0219790 MtrunA17_Chr6g0474961 39.806 103 57 2 149 246 6 108 2.12e-15 73.2
Msa0219790 MtrunA17_Chr1g0206421 34.043 141 81 4 82 210 11 151 3.80e-15 74.3
Msa0219790 MtrunA17_Chr8g0391511 25.463 216 141 6 29 238 33 234 6.11e-13 67.0
Msa0219790 MtrunA17_Chr6g0477591 36.111 72 46 0 79 150 1 72 7.91e-13 62.4
Msa0219790 MtrunA17_Chr3g0082951 33.663 101 66 1 33 133 122 221 2.60e-12 64.3
Msa0219790 MtrunA17_Chr6g0477581 35.135 74 46 1 85 156 1 74 5.39e-12 60.8
Msa0219790 MtrunA17_Chr4g0058891 24.286 210 145 7 35 243 40 236 5.51e-12 65.1
Msa0219790 MtrunA17_Chr1g0206171 45.455 66 34 1 178 243 39 102 1.17e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219790 AT3G22060.1 56.790 243 98 4 6 245 12 250 8.40e-92 271
Msa0219790 AT3G58310.1 48.305 236 110 5 17 244 23 254 8.65e-69 213
Msa0219790 AT4G20640.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20630.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20580.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20600.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20620.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20610.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20590.1 40.551 254 130 7 1 245 14 255 2.41e-53 173
Msa0219790 AT4G20570.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20560.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20540.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20645.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20530.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20550.1 40.551 254 130 7 1 245 28 269 3.12e-53 173
Msa0219790 AT4G20670.1 40.551 254 130 7 1 245 14 255 3.42e-53 173
Msa0219790 AT3G21990.1 41.593 226 119 6 29 245 34 255 1.81e-51 168
Msa0219790 AT3G21960.1 41.593 226 119 5 29 245 40 261 1.67e-50 166
Msa0219790 AT4G05200.1 36.864 236 140 4 18 246 17 250 4.66e-50 174
Msa0219790 AT4G05200.2 36.864 236 140 4 18 246 35 268 4.93e-50 174
Msa0219790 AT2G31620.1 42.920 226 115 6 29 245 34 254 6.11e-49 162
Msa0219790 AT5G48540.1 35.270 241 152 3 6 243 1 240 1.46e-48 161
Msa0219790 AT3G22010.1 39.912 228 121 8 29 245 40 262 1.27e-45 153
Msa0219790 AT3G21940.1 40.417 240 110 7 29 245 45 274 2.21e-45 153
Msa0219790 AT3G21940.2 44.944 178 77 3 88 245 3 179 1.52e-43 145
Msa0219790 AT4G20680.1 40.086 232 119 9 29 245 40 266 4.78e-43 147
Msa0219790 AT3G22050.1 46.471 170 79 5 86 246 92 258 5.58e-43 146
Msa0219790 AT3G22040.1 39.394 231 116 9 29 245 36 256 1.43e-41 143
Msa0219790 AT3G22000.1 39.224 232 121 9 29 245 40 266 2.14e-41 143
Msa0219790 AT3G21970.1 32.946 258 159 6 2 246 8 264 3.25e-39 137
Msa0219790 AT3G21910.1 36.522 230 129 6 29 244 40 266 9.71e-39 136
Msa0219790 AT4G23170.1 33.188 229 142 5 25 246 23 247 4.20e-37 131
Msa0219790 AT3G21900.2 34.286 245 148 8 6 244 11 248 8.74e-36 128
Msa0219790 AT4G23130.3 38.053 226 127 7 27 246 28 246 2.08e-35 132
Msa0219790 AT4G23130.2 38.053 226 127 7 27 246 28 246 3.71e-35 132
Msa0219790 AT4G23130.1 38.053 226 127 7 27 246 28 246 3.80e-35 132
Msa0219790 AT4G23230.1 34.389 221 134 5 31 246 29 243 5.55e-35 132
Msa0219790 AT4G23180.3 34.468 235 124 6 27 246 36 255 2.47e-34 129
Msa0219790 AT4G21230.1 37.089 213 121 5 35 243 37 240 5.77e-34 129
Msa0219790 AT4G23180.2 34.468 235 124 6 27 246 36 255 6.05e-34 129
Msa0219790 AT4G23180.1 34.468 235 124 6 27 246 36 255 1.21e-33 128
Msa0219790 AT4G23150.1 35.683 227 135 6 27 246 25 247 4.13e-33 127
Msa0219790 AT4G38830.1 33.784 222 138 5 28 243 26 244 4.45e-33 126
Msa0219790 AT1G61750.1 35.874 223 134 6 23 239 22 241 4.58e-33 123
Msa0219790 AT4G23160.1 32.735 223 141 4 29 246 46 264 2.84e-32 124
Msa0219790 AT4G23160.3 32.735 223 141 4 29 246 626 844 4.18e-32 124
Msa0219790 AT4G23160.2 32.735 223 141 4 29 246 626 844 4.18e-32 124
Msa0219790 AT3G21920.1 35.217 230 134 6 29 244 40 268 1.75e-31 117
Msa0219790 AT3G21930.1 35.217 230 134 6 29 244 40 268 1.77e-31 117
Msa0219790 AT3G21920.2 35.217 230 134 6 29 244 62 290 2.60e-31 117
Msa0219790 AT3G22030.1 43.919 148 65 6 110 245 111 252 2.98e-31 116
Msa0219790 AT3G29040.1 32.766 235 133 7 29 246 29 255 4.67e-31 115
Msa0219790 AT3G21900.1 32.653 245 144 8 6 244 11 240 5.72e-31 115
Msa0219790 AT4G21410.2 30.603 232 153 6 17 243 21 249 1.71e-30 118
Msa0219790 AT4G21410.3 30.603 232 153 6 17 243 21 249 3.26e-30 118
Msa0219790 AT1G63550.1 29.464 224 150 3 21 239 24 244 2.23e-28 110
Msa0219790 AT4G23280.3 32.143 224 138 5 29 246 29 244 2.41e-28 113
Msa0219790 AT4G23270.2 32.735 223 139 4 29 246 26 242 2.44e-28 113
Msa0219790 AT4G23270.1 32.735 223 139 4 29 246 26 242 2.44e-28 113
Msa0219790 AT4G23280.1 32.143 224 138 5 29 246 29 244 2.72e-28 113
Msa0219790 AT4G23280.2 32.143 224 138 5 29 246 29 244 2.77e-28 113
Msa0219790 AT4G23270.3 32.735 223 139 4 29 246 26 242 2.91e-28 113
Msa0219790 AT4G23220.1 30.734 218 142 5 33 243 25 240 4.53e-28 112
Msa0219790 AT4G23310.1 30.705 241 154 7 7 240 117 351 1.54e-27 111
Msa0219790 AT4G23310.1 28.125 224 146 7 24 238 22 239 5.45e-16 77.4
Msa0219790 AT4G23310.2 30.705 241 154 7 7 240 117 351 1.55e-27 111
Msa0219790 AT4G23310.2 28.319 226 143 7 24 238 22 239 6.94e-16 77.0
Msa0219790 AT3G29050.2 31.250 240 138 8 29 244 38 274 3.67e-27 106
Msa0219790 AT4G23140.1 32.314 229 140 6 27 246 26 248 4.46e-27 109
Msa0219790 AT4G23140.2 32.314 229 140 6 27 246 26 248 4.66e-27 109
Msa0219790 AT3G21980.1 29.646 226 115 6 29 245 34 224 6.77e-27 103
Msa0219790 AT4G23200.2 28.829 222 145 5 33 243 24 243 6.89e-25 102
Msa0219790 AT4G21400.3 30.317 221 147 5 28 243 33 251 9.53e-25 102
Msa0219790 AT4G21400.6 30.317 221 147 5 28 243 33 251 9.59e-25 102
Msa0219790 AT4G21400.4 30.317 221 147 5 28 243 33 251 9.59e-25 102
Msa0219790 AT4G21400.5 30.317 221 147 5 28 243 33 251 9.59e-25 102
Msa0219790 AT4G23200.1 28.829 222 145 5 33 243 24 243 1.06e-24 102
Msa0219790 AT4G21400.1 30.317 221 147 5 28 243 33 251 1.14e-24 102
Msa0219790 AT4G21400.2 30.317 221 147 5 28 243 33 251 1.21e-24 102
Msa0219790 AT4G11460.1 28.384 229 145 6 31 243 25 250 1.70e-24 102
Msa0219790 AT4G11460.3 28.384 229 145 6 31 243 25 250 1.85e-24 102
Msa0219790 AT1G63590.1 28.400 250 158 6 7 240 1 245 5.89e-24 97.4
Msa0219790 AT1G63600.1 28.571 217 143 4 32 239 39 252 2.08e-23 97.1
Msa0219790 AT4G11521.1 29.730 222 132 6 37 243 29 241 2.90e-23 95.5
Msa0219790 AT4G21400.7 28.495 186 129 3 62 243 40 225 6.14e-23 97.8
Msa0219790 AT3G60720.2 28.571 203 133 3 39 238 39 232 1.30e-22 93.2
Msa0219790 AT1G63570.3 28.319 226 153 4 21 241 21 242 1.33e-22 94.0
Msa0219790 AT1G63570.1 28.319 226 153 4 21 241 21 242 1.33e-22 94.0
Msa0219790 AT3G60720.1 28.571 203 133 3 39 238 39 232 1.91e-22 93.6
Msa0219790 AT1G63570.2 27.530 247 165 5 5 241 53 295 2.08e-22 94.4
Msa0219790 AT3G60720.3 28.571 203 133 3 39 238 39 232 2.11e-22 93.6
Msa0219790 AT3G45860.1 33.040 227 134 7 29 246 32 249 6.47e-22 94.7
Msa0219790 AT3G22020.2 40.411 146 74 6 86 222 58 199 4.25e-21 88.2
Msa0219790 AT3G22020.1 40.411 146 74 6 86 222 58 199 4.25e-21 88.2
Msa0219790 AT2G01660.2 29.851 201 126 4 43 239 41 230 5.30e-21 89.4
Msa0219790 AT2G01660.3 28.085 235 153 5 8 238 7 229 9.99e-21 89.0
Msa0219790 AT2G01660.1 28.085 235 153 5 8 238 7 229 1.00e-20 89.0
Msa0219790 AT1G70690.1 27.523 218 137 5 29 240 32 234 1.26e-20 89.0
Msa0219790 AT4G11460.2 28.571 175 111 3 83 243 1 175 1.62e-20 90.5
Msa0219790 AT4G11530.1 26.364 220 148 4 36 243 29 246 2.56e-20 90.1
Msa0219790 AT5G41290.1 26.126 222 153 5 27 241 27 244 9.09e-20 86.3
Msa0219790 AT5G37660.2 28.854 253 149 8 1 239 1 236 4.13e-19 84.7
Msa0219790 AT5G37660.1 28.854 253 149 8 1 239 1 236 4.57e-19 84.3
Msa0219790 AT4G23300.1 28.319 226 144 6 35 245 30 252 1.62e-17 82.0
Msa0219790 AT1G63580.1 26.341 205 139 5 45 240 37 238 1.97e-17 79.7
Msa0219790 AT4G23210.1 27.876 226 145 6 35 245 30 252 2.58e-17 81.3
Msa0219790 AT5G41300.1 26.482 253 158 7 5 240 6 247 3.25e-17 79.3
Msa0219790 AT4G23210.2 27.876 226 145 6 35 245 30 252 3.53e-17 80.9
Msa0219790 AT4G23210.4 27.876 226 145 6 35 245 30 252 3.53e-17 80.9
Msa0219790 AT4G23210.3 27.876 226 145 6 35 245 30 252 3.55e-17 80.9
Msa0219790 AT4G23210.5 27.876 226 145 6 35 245 30 252 3.68e-17 80.9
Msa0219790 AT4G11490.1 26.222 225 147 7 33 244 28 246 7.77e-17 79.7
Msa0219790 AT4G04500.1 25.269 186 124 3 75 245 69 254 1.11e-16 79.3
Msa0219790 AT4G04500.2 25.405 185 123 3 76 245 70 254 1.42e-16 79.0
Msa0219790 AT4G04500.3 25.405 185 123 3 76 245 70 254 1.42e-16 79.0
Msa0219790 AT4G23190.1 26.423 246 165 7 12 243 5 248 2.29e-16 78.6
Msa0219790 AT4G23260.2 24.554 224 153 6 33 243 30 250 2.34e-16 78.6
Msa0219790 AT4G23260.1 24.554 224 153 6 33 243 30 250 2.79e-16 78.2
Msa0219790 AT4G23190.2 26.423 246 165 7 12 243 5 248 3.06e-16 78.2
Msa0219790 AT4G00970.2 28.378 222 147 8 24 239 41 256 4.41e-16 77.4
Msa0219790 AT4G00970.1 28.378 222 147 8 24 239 41 256 4.52e-16 77.8
Msa0219790 AT4G23240.1 24.303 251 171 8 1 243 5 244 2.63e-14 72.4
Msa0219790 AT4G11480.3 23.320 253 161 8 1 239 1 234 4.10e-14 72.0
Msa0219790 AT4G11480.2 23.320 253 161 8 1 239 1 234 4.18e-14 71.6
Msa0219790 AT4G11480.1 23.320 253 161 8 1 239 1 234 4.31e-14 71.6
Msa0219790 AT4G11480.4 23.320 253 161 8 1 239 1 234 4.85e-14 71.6
Msa0219790 AT3G21945.1 33.333 132 74 4 19 144 25 148 9.96e-14 67.0
Msa0219790 AT5G40380.1 25.726 241 158 8 7 243 13 236 1.35e-13 70.5
Msa0219790 AT5G40380.3 25.726 241 158 8 7 243 13 236 1.62e-13 70.1
Msa0219790 AT5G40380.2 25.726 241 158 8 7 243 13 236 1.64e-13 70.1
Msa0219790 AT4G23250.1 25.328 229 150 6 33 243 30 255 1.69e-13 70.1
Msa0219790 AT4G23320.2 45.588 68 36 1 178 244 40 107 2.33e-13 69.3
Msa0219790 AT4G23320.1 45.588 68 36 1 178 244 40 107 2.33e-13 69.3
Msa0219790 AT4G23250.3 25.328 229 150 6 33 243 30 255 2.33e-13 69.7
Msa0219790 AT4G23290.2 24.336 226 138 8 39 244 35 247 2.44e-13 69.7
Msa0219790 AT4G23250.2 25.328 229 150 6 33 243 30 255 2.45e-13 69.7
Msa0219790 AT4G23320.3 45.588 68 36 1 178 244 61 128 2.66e-13 69.3
Msa0219790 AT4G23190.3 26.471 170 114 3 85 243 1 170 5.61e-13 68.6
Msa0219790 AT4G23190.4 26.471 170 114 3 85 243 1 170 5.61e-13 68.6
Msa0219790 AT3G29050.1 42.667 75 37 2 175 244 156 229 9.03e-13 66.2
Msa0219790 AT5G41280.1 24.468 188 125 4 58 239 67 243 3.82e-12 65.1
Msa0219790 AT4G11470.1 23.108 251 155 7 16 243 10 245 1.16e-11 64.7
Msa0219790 AT4G11470.2 23.108 251 155 7 16 243 15 250 1.35e-11 64.3

Find 51 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGCTTATTTAAATATT+TGG 0.126781 2_1:+67646526 Msa0219790:CDS
GAGGAATCAAAGAAACTTTA+TGG 0.133498 2_1:+67646719 Msa0219790:CDS
TCTCCTGTTGCATACAATTT+AGG 0.167557 2_1:-67646686 None:intergenic
TTCTTTATCCAAACATCTTT+TGG 0.238773 2_1:+67646215 Msa0219790:CDS
GTCCATATGCTTGTTGGTTT+TGG 0.242106 2_1:-67646388 None:intergenic
GCAGCGACTTTGGATTTCTT+TGG 0.313046 2_1:-67646471 None:intergenic
AATTACTACTCTTTGACAAA+TGG 0.325890 2_1:-67646887 None:intergenic
TATTTGGATACGGATTTCTT+TGG 0.335708 2_1:+67646542 Msa0219790:CDS
AAGACCCCTTCAACAGGTTT+TGG 0.346376 2_1:+67646338 Msa0219790:CDS
AGGAATCAAAGAAACTTTAT+GGG 0.353600 2_1:+67646720 Msa0219790:CDS
AAGAAGGAGGTAGAGTTGTT+GGG 0.371129 2_1:+67646834 Msa0219790:CDS
ATATGGACTCGCCCTTTGTC+GGG 0.372869 2_1:+67646403 Msa0219790:CDS
CATATGGACTCGCCCTTTGT+CGG 0.379449 2_1:+67646402 Msa0219790:CDS
TGTTGTATGGGCAGCGACTT+TGG 0.392266 2_1:-67646481 None:intergenic
ATTACTACTCTTTGACAAAT+GGG 0.398241 2_1:-67646886 None:intergenic
AAAGAAGGAGGTAGAGTTGT+TGG 0.403569 2_1:+67646833 Msa0219790:CDS
AATCCTAAATTGTATGCAAC+AGG 0.404453 2_1:+67646683 Msa0219790:CDS
ATGATGCCGCCTTTGTTGTA+TGG 0.409331 2_1:-67646494 None:intergenic
ATCTACAAGACCCCTTCAAC+AGG 0.423539 2_1:+67646332 Msa0219790:CDS
GATCGGCACCAAAAGATGTT+TGG 0.431286 2_1:-67646223 None:intergenic
AACCAAAACCAACAAGCATA+TGG 0.442223 2_1:+67646386 Msa0219790:CDS
ATGTTTGGATAAAGAAAGCT+AGG 0.452060 2_1:-67646208 None:intergenic
GGGCGAGTCCATATGCTTGT+TGG 0.457418 2_1:-67646394 None:intergenic
CTTATTTAAATATTTGGATA+CGG 0.472563 2_1:+67646532 Msa0219790:CDS
ACAACAAAGGCGGCATCATA+TGG 0.486352 2_1:+67646498 Msa0219790:CDS
TTGGATTTCTTTGGTTGCCT+CGG 0.487334 2_1:-67646462 None:intergenic
TGAGACATCACCCCGACAAA+GGG 0.491087 2_1:-67646414 None:intergenic
CCACTACCAAAACCTGTTGA+AGG 0.504294 2_1:-67646344 None:intergenic
AATTGTTGTGATGGAAAAGA+AGG 0.508005 2_1:+67646818 Msa0219790:CDS
AGAAGGAGGTAGAGTTGTTG+GGG 0.508195 2_1:+67646835 Msa0219790:CDS
TCTTGCAATCAGCACTAGAA+AGG 0.515240 2_1:-67646763 None:intergenic
GAACTTCCAAATTGTTGTGA+TGG 0.518434 2_1:+67646809 Msa0219790:CDS
GTCTTGTAATTAAACGTGGA+AGG 0.520587 2_1:-67646620 None:intergenic
AAAGAAAGCTAGGGTAAATG+AGG 0.530398 2_1:-67646198 None:intergenic
GTGCCAACAGATTCTATATG+TGG 0.544696 2_1:+67646576 Msa0219790:CDS
CACTACCAAAACCTGTTGAA+GGG 0.556799 2_1:-67646343 None:intergenic
TGATGCCGCCTTTGTTGTAT+GGG 0.559095 2_1:-67646493 None:intergenic
TCTTGTAATTAAACGTGGAA+GGG 0.572047 2_1:-67646619 None:intergenic
GTGAGACATCACCCCGACAA+AGG 0.578094 2_1:-67646415 None:intergenic
ATTCCACATATAGAATCTGT+TGG 0.595083 2_1:-67646579 None:intergenic
TATGGACTCGCCCTTTGTCG+GGG 0.608556 2_1:+67646404 Msa0219790:CDS
ACTACCAAAACCTGTTGAAG+GGG 0.619106 2_1:-67646342 None:intergenic
CGCTGCCCATACAACAAAGG+CGG 0.624066 2_1:+67646488 Msa0219790:CDS
TGTTGTGATGGAAAAGAAGG+AGG 0.629309 2_1:+67646821 Msa0219790:CDS
AACAGGAGAGGTAAAGCTTG+AGG 0.633330 2_1:+67646700 Msa0219790:CDS
GAAGGAGGTAGAGTTGTTGG+GGG 0.635177 2_1:+67646836 Msa0219790:CDS
TTTAGTCTTGTAATTAAACG+TGG 0.638793 2_1:-67646624 None:intergenic
TAAATTGTATGCAACAGGAG+AGG 0.657769 2_1:+67646688 Msa0219790:CDS
GTGTAAAACTTGTGTCTCCG+AGG 0.663724 2_1:+67646445 Msa0219790:CDS
TGTTTGGATAAAGAAAGCTA+GGG 0.679790 2_1:-67646207 None:intergenic
AGTCGCTGCCCATACAACAA+AGG 0.682830 2_1:+67646485 Msa0219790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGCTTATTTAAATATT+TGG + chr2_1:67646526-67646545 Msa0219790:CDS 10.0%
!! CTTATTTAAATATTTGGATA+CGG + chr2_1:67646532-67646551 Msa0219790:CDS 15.0%
!! TTAGAACAAAAATGAAAAAG+CGG - chr2_1:67646248-67646267 None:intergenic 20.0%
!!! TTTTCATTTTTGTTCTAACT+CGG + chr2_1:67646250-67646269 Msa0219790:CDS 20.0%
!!! TTTTCAAGTTTGATTCATAT+GGG - chr2_1:67646295-67646314 None:intergenic 20.0%
!! TTCTTTATCCAAACATCTTT+TGG + chr2_1:67646215-67646234 Msa0219790:CDS 25.0%
!!! TTTCATTTTTGTTCTAACTC+GGG + chr2_1:67646251-67646270 Msa0219790:CDS 25.0%
!!! GTTTTCAAGTTTGATTCATA+TGG - chr2_1:67646296-67646315 None:intergenic 25.0%
!!! TTTAGTCTTGTAATTAAACG+TGG - chr2_1:67646627-67646646 None:intergenic 25.0%
! AGGAATCAAAGAAACTTTAT+GGG + chr2_1:67646720-67646739 Msa0219790:CDS 25.0%
TGTTTGGATAAAGAAAGCTA+GGG - chr2_1:67646210-67646229 None:intergenic 30.0%
ATGTTTGGATAAAGAAAGCT+AGG - chr2_1:67646211-67646230 None:intergenic 30.0%
ACAAAAATGAAAAAGCGGAT+CGG - chr2_1:67646243-67646262 None:intergenic 30.0%
TATTTGGATACGGATTTCTT+TGG + chr2_1:67646542-67646561 Msa0219790:CDS 30.0%
ATTCCACATATAGAATCTGT+TGG - chr2_1:67646582-67646601 None:intergenic 30.0%
TCTTGTAATTAAACGTGGAA+GGG - chr2_1:67646622-67646641 None:intergenic 30.0%
AATCCTAAATTGTATGCAAC+AGG + chr2_1:67646683-67646702 Msa0219790:CDS 30.0%
GAGGAATCAAAGAAACTTTA+TGG + chr2_1:67646719-67646738 Msa0219790:CDS 30.0%
! TCTTTTCCATCACAACAATT+TGG - chr2_1:67646818-67646837 None:intergenic 30.0%
! AATTGTTGTGATGGAAAAGA+AGG + chr2_1:67646818-67646837 Msa0219790:CDS 30.0%
AAAGAAAGCTAGGGTAAATG+AGG - chr2_1:67646201-67646220 None:intergenic 35.0%
!!! ATGCTTGTTGGTTTTGGTTT+TGG - chr2_1:67646385-67646404 None:intergenic 35.0%
AACCAAAACCAACAAGCATA+TGG + chr2_1:67646386-67646405 Msa0219790:CDS 35.0%
! ACACAAGTTTTACACTCTGA+GGG - chr2_1:67646440-67646459 None:intergenic 35.0%
GTCTTGTAATTAAACGTGGA+AGG - chr2_1:67646623-67646642 None:intergenic 35.0%
TCTCCTGTTGCATACAATTT+AGG - chr2_1:67646689-67646708 None:intergenic 35.0%
TAAATTGTATGCAACAGGAG+AGG + chr2_1:67646688-67646707 Msa0219790:CDS 35.0%
GAACTTCCAAATTGTTGTGA+TGG + chr2_1:67646809-67646828 Msa0219790:CDS 35.0%
ACTACCAAAACCTGTTGAAG+GGG - chr2_1:67646345-67646364 None:intergenic 40.0%
CACTACCAAAACCTGTTGAA+GGG - chr2_1:67646346-67646365 None:intergenic 40.0%
!!! GTCCATATGCTTGTTGGTTT+TGG - chr2_1:67646391-67646410 None:intergenic 40.0%
! GACACAAGTTTTACACTCTG+AGG - chr2_1:67646441-67646460 None:intergenic 40.0%
TTGGATTTCTTTGGTTGCCT+CGG - chr2_1:67646465-67646484 None:intergenic 40.0%
GTGCCAACAGATTCTATATG+TGG + chr2_1:67646576-67646595 Msa0219790:CDS 40.0%
! TAGAAGCTTTTTGTGCAAGC+TGG - chr2_1:67646661-67646680 None:intergenic 40.0%
TCTTGCAATCAGCACTAGAA+AGG - chr2_1:67646766-67646785 None:intergenic 40.0%
! TGTTGTGATGGAAAAGAAGG+AGG + chr2_1:67646821-67646840 Msa0219790:CDS 40.0%
AAAGAAGGAGGTAGAGTTGT+TGG + chr2_1:67646833-67646852 Msa0219790:CDS 40.0%
AAGAAGGAGGTAGAGTTGTT+GGG + chr2_1:67646834-67646853 Msa0219790:CDS 40.0%
GATCGGCACCAAAAGATGTT+TGG - chr2_1:67646226-67646245 None:intergenic 45.0%
ATCTACAAGACCCCTTCAAC+AGG + chr2_1:67646332-67646351 Msa0219790:CDS 45.0%
! AAGACCCCTTCAACAGGTTT+TGG + chr2_1:67646338-67646357 Msa0219790:CDS 45.0%
CCACTACCAAAACCTGTTGA+AGG - chr2_1:67646347-67646366 None:intergenic 45.0%
!! CCTTCAACAGGTTTTGGTAG+TGG + chr2_1:67646344-67646363 Msa0219790:CDS 45.0%
GTGTAAAACTTGTGTCTCCG+AGG + chr2_1:67646445-67646464 Msa0219790:CDS 45.0%
GCAGCGACTTTGGATTTCTT+TGG - chr2_1:67646474-67646493 None:intergenic 45.0%
! TGATGCCGCCTTTGTTGTAT+GGG - chr2_1:67646496-67646515 None:intergenic 45.0%
! ATGATGCCGCCTTTGTTGTA+TGG - chr2_1:67646497-67646516 None:intergenic 45.0%
ACAACAAAGGCGGCATCATA+TGG + chr2_1:67646498-67646517 Msa0219790:CDS 45.0%
AACAGGAGAGGTAAAGCTTG+AGG + chr2_1:67646700-67646719 Msa0219790:CDS 45.0%
AGAAGGAGGTAGAGTTGTTG+GGG + chr2_1:67646835-67646854 Msa0219790:CDS 45.0%
CATATGGACTCGCCCTTTGT+CGG + chr2_1:67646402-67646421 Msa0219790:CDS 50.0%
ATATGGACTCGCCCTTTGTC+GGG + chr2_1:67646403-67646422 Msa0219790:CDS 50.0%
TGAGACATCACCCCGACAAA+GGG - chr2_1:67646417-67646436 None:intergenic 50.0%
TGTTGTATGGGCAGCGACTT+TGG - chr2_1:67646484-67646503 None:intergenic 50.0%
AGTCGCTGCCCATACAACAA+AGG + chr2_1:67646485-67646504 Msa0219790:CDS 50.0%
GAAGGAGGTAGAGTTGTTGG+GGG + chr2_1:67646836-67646855 Msa0219790:CDS 50.0%
GGGCGAGTCCATATGCTTGT+TGG - chr2_1:67646397-67646416 None:intergenic 55.0%
TATGGACTCGCCCTTTGTCG+GGG + chr2_1:67646404-67646423 Msa0219790:CDS 55.0%
GTGAGACATCACCCCGACAA+AGG - chr2_1:67646418-67646437 None:intergenic 55.0%
CGCTGCCCATACAACAAAGG+CGG + chr2_1:67646488-67646507 Msa0219790:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 67646164 67646904 67646164 ID=Msa0219790;Name=Msa0219790
chr2_1 mRNA 67646164 67646904 67646164 ID=Msa0219790-mRNA-1;Parent=Msa0219790;Name=Msa0219790-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|246
chr2_1 exon 67646164 67646904 67646164 ID=Msa0219790-mRNA-1:exon:19125;Parent=Msa0219790-mRNA-1
chr2_1 CDS 67646164 67646904 67646164 ID=Msa0219790-mRNA-1:cds;Parent=Msa0219790-mRNA-1
Gene Sequence

>Msa0219790

ATGGCTATCTCAAAGCTCATGACAATTTTTATTTCCTCATTTACCCTAGCTTTCTTTATCCAAACATCTTTTGGTGCCGATCCGCTTTTTCATTTTTGTTCTAACTCGGGTAACTTCACAGCACATAGCCCATATGAATCAAACTTGAAAACACTCATCGACTCACTTATCTACAAGACCCCTTCAACAGGTTTTGGTAGTGGATCATCGAGTCTGATCCAAAACCAAAACCAACAAGCATATGGACTCGCCCTTTGTCGGGGTGATGTCTCACCCTCAGAGTGTAAAACTTGTGTCTCCGAGGCAACCAAAGAAATCCAAAGTCGCTGCCCATACAACAAAGGCGGCATCATATGGTACGATTATTGCTTATTTAAATATTTGGATACGGATTTCTTTGGCAAGATTGACAGTGCCAACAGATTCTATATGTGGAATTTGAATAACGTGAGTGACCCTTCCACGTTTAATTACAAGACTAAAGATTTATTGAGCCAGCTTGCACAAAAAGCTTCTATGAATCCTAAATTGTATGCAACAGGAGAGGTAAAGCTTGAGGAATCAAAGAAACTTTATGGGCTAACTCAGTGCACTAGAGACCTTTCTAGTGCTGATTGCAAGAATTGTCTTGATGCTGCAATTAATGAACTTCCAAATTGTTGTGATGGAAAAGAAGGAGGTAGAGTTGTTGGGGGAAGCTGTAACTTTCGATATGAGATATACCCATTTGTCAAAGAGTAG
Protein sequence

>Msa0219790

MAISKLMTIFISSFTLAFFIQTSFGADPLFHFCSNSGNFTAHSPYESNLKTLIDSLIYKTPSTGFGSGSSSLIQNQNQQAYGLALCRGDVSPSECKTCVSEATKEIQSRCPYNKGGIIWYDYCLFKYLDTDFFGKIDSANRFYMWNLNNVSDPSTFNYKTKDLLSQLAQKASMNPKLYATGEVKLEESKKLYGLTQCTRDLSSADCKNCLDAAINELPNCCDGKEGGRVVGGSCNFRYEIYPFVKE*