Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025270 | XP_003623366.1 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 1.31e-109 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025270 | sp|O80920|PYL4_ARATH | 75.325 | 154 | 29 | 2 | 5 | 157 | 31 | 176 | 2.92e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025270 | G7KT83 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 6.25e-110 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629220 | Msa1025270 | 0.809272 | 2.054240e-50 | -8.615850e-47 |
| Msa0667010 | Msa1025270 | 0.817904 | 2.588865e-52 | -8.615850e-47 |
| Msa0219790 | Msa1025270 | 0.805522 | 1.281676e-49 | -8.615850e-47 |
| Msa0220960 | Msa1025270 | 0.829646 | 4.582169e-55 | -8.615850e-47 |
| Msa1025270 | Msa1050140 | 0.918303 | 1.840769e-86 | -8.615850e-47 |
| Msa1025270 | Msa1088460 | 0.895790 | 6.856676e-76 | -8.615850e-47 |
| Msa1025270 | Msa1153000 | 0.849961 | 2.310296e-60 | -8.615850e-47 |
| Msa1025270 | Msa1170840 | 0.808753 | 2.653239e-50 | -8.615850e-47 |
| Msa1025270 | Msa1433900 | 0.826000 | 3.449070e-54 | -8.615850e-47 |
| Msa1025270 | Msa1445040 | 0.805554 | 1.262165e-49 | -8.615850e-47 |
| Msa0262410 | Msa1025270 | 0.810352 | 1.202848e-50 | -8.615850e-47 |
| Msa0300310 | Msa1025270 | 0.822186 | 2.710223e-53 | -8.615850e-47 |
| Msa0336610 | Msa1025270 | 0.804924 | 1.710191e-49 | -8.615850e-47 |
| Msa0337740 | Msa1025270 | 0.846010 | 2.840690e-59 | -8.615850e-47 |
| Msa0532210 | Msa1025270 | 0.816746 | 4.716336e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025270 | MtrunA17_Chr7g0243271 | 98.089 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 1.20e-113 | 320 |
| Msa1025270 | MtrunA17_Chr4g0005501 | 68.153 | 157 | 44 | 3 | 1 | 156 | 36 | 187 | 7.16e-74 | 221 |
| Msa1025270 | MtrunA17_Chr3g0114121 | 66.667 | 156 | 43 | 3 | 4 | 158 | 57 | 204 | 1.52e-68 | 208 |
| Msa1025270 | MtrunA17_Chr5g0437611 | 62.722 | 169 | 52 | 5 | 4 | 169 | 37 | 197 | 1.22e-64 | 197 |
| Msa1025270 | MtrunA17_Chr8g0347191 | 56.164 | 146 | 58 | 3 | 13 | 158 | 73 | 212 | 3.06e-54 | 172 |
| Msa1025270 | MtrunA17_Chr3g0126471 | 54.902 | 153 | 63 | 3 | 6 | 158 | 14 | 160 | 4.72e-54 | 170 |
| Msa1025270 | MtrunA17_Chr1g0158871 | 56.757 | 148 | 58 | 3 | 11 | 158 | 17 | 158 | 7.28e-54 | 169 |
| Msa1025270 | MtrunA17_Chr5g0411391 | 57.792 | 154 | 61 | 3 | 13 | 164 | 44 | 195 | 2.88e-53 | 169 |
| Msa1025270 | MtrunA17_Chr1g0151661 | 55.556 | 144 | 59 | 3 | 13 | 156 | 39 | 177 | 1.67e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025270 | AT2G38310.1 | 75.325 | 154 | 29 | 2 | 5 | 157 | 31 | 176 | 2.97e-72 | 217 |
| Msa1025270 | AT2G40330.1 | 62.420 | 157 | 55 | 2 | 2 | 157 | 37 | 190 | 1.16e-67 | 205 |
| Msa1025270 | AT5G05440.1 | 66.443 | 149 | 41 | 3 | 9 | 156 | 41 | 181 | 7.09e-67 | 203 |
| Msa1025270 | AT1G01360.1 | 55.944 | 143 | 57 | 2 | 16 | 158 | 24 | 160 | 9.17e-55 | 172 |
| Msa1025270 | AT5G53160.2 | 52.866 | 157 | 67 | 3 | 2 | 158 | 9 | 158 | 2.39e-54 | 171 |
| Msa1025270 | AT4G01026.1 | 57.042 | 142 | 55 | 3 | 17 | 158 | 27 | 162 | 1.19e-52 | 167 |
| Msa1025270 | AT2G26040.1 | 54.605 | 152 | 60 | 2 | 8 | 156 | 17 | 162 | 2.56e-52 | 166 |
| Msa1025270 | AT4G17870.1 | 50.000 | 166 | 76 | 3 | 1 | 164 | 5 | 165 | 3.87e-50 | 160 |
| Msa1025270 | AT4G27920.1 | 50.000 | 148 | 69 | 2 | 11 | 158 | 12 | 154 | 3.76e-49 | 157 |
| Msa1025270 | AT1G73000.1 | 49.342 | 152 | 71 | 3 | 11 | 156 | 34 | 185 | 9.45e-47 | 152 |
| Msa1025270 | AT5G45860.1 | 55.634 | 142 | 50 | 2 | 15 | 156 | 6 | 134 | 4.76e-42 | 138 |
| Msa1025270 | AT5G46790.2 | 54.305 | 151 | 66 | 2 | 7 | 156 | 38 | 186 | 6.83e-41 | 137 |
| Msa1025270 | AT5G46790.1 | 54.305 | 151 | 66 | 2 | 7 | 156 | 38 | 186 | 6.83e-41 | 137 |
| Msa1025270 | AT5G45870.1 | 54.135 | 133 | 54 | 1 | 26 | 158 | 10 | 135 | 1.80e-37 | 127 |
| Msa1025270 | AT5G53160.1 | 53.571 | 112 | 50 | 2 | 2 | 113 | 9 | 118 | 9.54e-37 | 125 |
| Msa1025270 | AT4G18620.1 | 51.064 | 141 | 58 | 3 | 24 | 158 | 7 | 142 | 1.67e-31 | 112 |
Find 69 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTAGCGGGCGATGGCGTC+GGG | 0.286221 | 7_1:-55681937 | None:intergenic |
| GGGACGGTGGTTGTTGGGTT+TGG | 0.316747 | 7_1:-55681916 | None:intergenic |
| TTAGTGAAACAATATTAAAA+AGG | 0.329127 | 7_1:-55682680 | None:intergenic |
| GTGGTAGCGGGCGATGGCGT+CGG | 0.350975 | 7_1:-55681938 | None:intergenic |
| GCGTCGGGGACGGTGGTTGT+TGG | 0.355449 | 7_1:-55681922 | None:intergenic |
| ACGGCGGAGCAACACTGGTT+GGG | 0.355563 | 7_1:-55681976 | None:intergenic |
| GTATCTTCAGTGGTGTTTCC+AGG | 0.355878 | 7_1:-55682354 | None:intergenic |
| CGTCGGGGACGGTGGTTGTT+GGG | 0.383221 | 7_1:-55681921 | None:intergenic |
| TCTTCGTCGGAGATCGGACT+AGG | 0.424642 | 7_1:-55682276 | None:intergenic |
| GACTGCGTGGGTGTGGTAGC+GGG | 0.430031 | 7_1:-55681950 | None:intergenic |
| AGACTGCGTGGGTGTGGTAG+CGG | 0.434046 | 7_1:-55681951 | None:intergenic |
| GCTGACAGCGGCGGGGAGGC+CGG | 0.435041 | 7_1:-55682148 | None:intergenic |
| GCGGGCGATGGCGTCGGGGA+CGG | 0.442801 | 7_1:-55681932 | None:intergenic |
| CGTTCGGTGCTGACAGCGGC+GGG | 0.446228 | 7_1:-55682156 | None:intergenic |
| CGGCGGAGCAACACTGGTTG+GGG | 0.450760 | 7_1:-55681975 | None:intergenic |
| GCATGGTCGGCGGTGATCAC+CGG | 0.471089 | 7_1:+55682220 | Msa1025270:CDS |
| GTGGGTGTGGTAGCGGGCGA+TGG | 0.478652 | 7_1:-55681944 | None:intergenic |
| GTCTAGGACTTCGAGACGTT+CGG | 0.489158 | 7_1:-55682172 | None:intergenic |
| CGTGAAGTCCGTGTCATCTC+CGG | 0.492295 | 7_1:+55682129 | Msa1025270:CDS |
| CGGAGATGACACGGACTTCA+CGG | 0.493471 | 7_1:-55682128 | None:intergenic |
| GGCGATGGCGTCGGGGACGG+TGG | 0.507167 | 7_1:-55681929 | None:intergenic |
| TACGTTGTTGATGTTCCACC+TGG | 0.511693 | 7_1:+55682336 | Msa1025270:CDS |
| TTCACGAGAAAATGAAACTA+GGG | 0.513538 | 7_1:+55682769 | Msa1025270:three_prime_UTR |
| ACTAAAGTGAAAATGAAACT+AGG | 0.515373 | 7_1:+55682698 | Msa1025270:three_prime_UTR |
| TTTCACGAGAAAATGAAACT+AGG | 0.517366 | 7_1:+55682768 | Msa1025270:three_prime_UTR |
| GACGGCGGAGCAACACTGGT+TGG | 0.519929 | 7_1:-55681977 | None:intergenic |
| CCGCACCCGTCTCAACCGTC+TGG | 0.521090 | 7_1:+55682013 | Msa1025270:CDS |
| GTCATCAGCTTCAGCATGGT+CGG | 0.522748 | 7_1:+55682207 | Msa1025270:CDS |
| AGTCCGATCTCCGACGAAGA+TGG | 0.524898 | 7_1:+55682279 | Msa1025270:CDS |
| TTGCCATCTTCGTCGGAGAT+CGG | 0.532468 | 7_1:-55682282 | None:intergenic |
| TGCCATGTCATCCTCGGCGA+CGG | 0.538063 | 7_1:+55682090 | Msa1025270:CDS |
| GAAGATGGCAACCACCGCTC+CGG | 0.541680 | 7_1:+55682294 | Msa1025270:CDS |
| CTAAAGTGAAAATGAAACTA+GGG | 0.543939 | 7_1:+55682699 | Msa1025270:three_prime_UTR |
| TGACATGACGTTCATCGTCT+AGG | 0.555135 | 7_1:-55682188 | None:intergenic |
| CGGGGAGGCCGGAGATGACA+CGG | 0.556039 | 7_1:-55682137 | None:intergenic |
| TGCGGCGATTTGTTGGATGA+CGG | 0.556569 | 7_1:-55681995 | None:intergenic |
| TACGGACCAGACGGTTGAGA+CGG | 0.558831 | 7_1:-55682019 | None:intergenic |
| ATTGTCGAAGCGACGGACTA+CGG | 0.565639 | 7_1:-55682037 | None:intergenic |
| ATCCTCGGCGACGGCAACGT+CGG | 0.566845 | 7_1:+55682099 | Msa1025270:CDS |
| CAACCACCGTGCCGGAGCGG+TGG | 0.569837 | 7_1:-55682305 | None:intergenic |
| ACGTTCGGTGCTGACAGCGG+CGG | 0.570809 | 7_1:-55682157 | None:intergenic |
| AAAAGCTGCCATGTCATCCT+CGG | 0.573277 | 7_1:+55682084 | Msa1025270:CDS |
| CGGTGCTGACAGCGGCGGGG+AGG | 0.581007 | 7_1:-55682152 | None:intergenic |
| GGATTCAACAACCACCGTGC+CGG | 0.581765 | 7_1:-55682313 | None:intergenic |
| GCGGTGGTTGCCATCTTCGT+CGG | 0.582833 | 7_1:-55682289 | None:intergenic |
| TGCCGTCGCCGAGGATGACA+TGG | 0.583389 | 7_1:-55682092 | None:intergenic |
| TGCCGACGTTGCCGTCGCCG+AGG | 0.587984 | 7_1:-55682101 | None:intergenic |
| GGATGACGGCGGAGCAACAC+TGG | 0.592996 | 7_1:-55681981 | None:intergenic |
| CTTCGTCGGAGATCGGACTA+GGG | 0.595738 | 7_1:-55682275 | None:intergenic |
| TCTTCAGTGGTGTTTCCAGG+TGG | 0.600688 | 7_1:-55682351 | None:intergenic |
| ACGGACCAGACGGTTGAGAC+GGG | 0.601122 | 7_1:-55682018 | None:intergenic |
| TGGCAACCACCGCTCCGGCA+CGG | 0.610622 | 7_1:+55682299 | Msa1025270:CDS |
| GGTGAAGAGTGGTGACAGAA+CGG | 0.622514 | 7_1:-55682254 | None:intergenic |
| GCGACGGACTACGGACCAGA+CGG | 0.625454 | 7_1:-55682028 | None:intergenic |
| AAACACACATGTATCTTCAG+TGG | 0.628787 | 7_1:-55682364 | None:intergenic |
| CAACCACCGCTCCGGCACGG+TGG | 0.633877 | 7_1:+55682302 | Msa1025270:CDS |
| CAACAACCACCGTGCCGGAG+CGG | 0.635412 | 7_1:-55682308 | None:intergenic |
| GGTAGCGGGCGATGGCGTCG+GGG | 0.638452 | 7_1:-55681936 | None:intergenic |
| GGCGGAGCAACACTGGTTGG+GGG | 0.641966 | 7_1:-55681974 | None:intergenic |
| CCAGACGGTTGAGACGGGTG+CGG | 0.647488 | 7_1:-55682013 | None:intergenic |
| ATCAGCTTCAGCATGGTCGG+CGG | 0.648676 | 7_1:+55682210 | Msa1025270:CDS |
| GAGACGTTCGGTGCTGACAG+CGG | 0.650293 | 7_1:-55682160 | None:intergenic |
| TCATGTCATCAGCTTCAGCA+TGG | 0.652866 | 7_1:+55682203 | Msa1025270:CDS |
| GTTCGGTGCTGACAGCGGCG+GGG | 0.655778 | 7_1:-55682155 | None:intergenic |
| CAGAACGGTAGTTAGCAAGC+CGG | 0.656130 | 7_1:-55682239 | None:intergenic |
| GATCGGACTAGGGTGAAGAG+TGG | 0.660402 | 7_1:-55682265 | None:intergenic |
| CTTGTGGATTGTCGAAGCGA+CGG | 0.660521 | 7_1:-55682044 | None:intergenic |
| GGCGATTTGTTGGATGACGG+CGG | 0.674940 | 7_1:-55681992 | None:intergenic |
| AGGTGGAACATCAACAACGT+AGG | 0.714920 | 7_1:-55682334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAAAAACAAAACAA+AGG | - | chr7_1:55682494-55682513 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTGTTTTTAACTT+CGG | + | chr7_1:55682509-55682528 | Msa1025270:intron | 15.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_1:55682683-55682702 | None:intergenic | 15.0% |
| !! | AAAACAAAAAAACAAAACAA+AGG | - | chr7_1:55682494-55682513 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTGTTTTTAACTT+CGG | + | chr7_1:55682509-55682528 | Msa1025270:intron | 15.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_1:55682683-55682702 | None:intergenic | 15.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_1:55682382-55682401 | Msa1025270:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_1:55682669-55682688 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_1:55682698-55682717 | Msa1025270:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_1:55682699-55682718 | Msa1025270:three_prime_UTR | 25.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_1:55682382-55682401 | Msa1025270:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_1:55682669-55682688 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_1:55682698-55682717 | Msa1025270:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_1:55682699-55682718 | Msa1025270:three_prime_UTR | 25.0% |
| TTTCACGAGAAAATGAAACT+AGG | + | chr7_1:55682768-55682787 | Msa1025270:three_prime_UTR | 30.0% | |
| ! | GCTTTTGACGAAGTTTTTGT+AGG | - | chr7_1:55682070-55682089 | None:intergenic | 35.0% |
| AAACACACATGTATCTTCAG+TGG | - | chr7_1:55682367-55682386 | None:intergenic | 35.0% | |
| ! | GCTTTTGACGAAGTTTTTGT+AGG | - | chr7_1:55682070-55682089 | None:intergenic | 35.0% |
| AAACACACATGTATCTTCAG+TGG | - | chr7_1:55682367-55682386 | None:intergenic | 35.0% | |
| ! | ACGAAGTTTTTGTAGGCTTG+TGG | - | chr7_1:55682063-55682082 | None:intergenic | 40.0% |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_1:55682413-55682432 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_1:55682422-55682441 | Msa1025270:intron | 40.0% |
| ! | ACGAAGTTTTTGTAGGCTTG+TGG | - | chr7_1:55682063-55682082 | None:intergenic | 40.0% |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_1:55682413-55682432 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_1:55682422-55682441 | Msa1025270:intron | 40.0% |
| AAAAGCTGCCATGTCATCCT+CGG | + | chr7_1:55682084-55682103 | Msa1025270:CDS | 45.0% | |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_1:55682191-55682210 | None:intergenic | 45.0% | |
| TCATGTCATCAGCTTCAGCA+TGG | + | chr7_1:55682203-55682222 | Msa1025270:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_1:55682337-55682356 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_1:55682336-55682355 | Msa1025270:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_1:55682357-55682376 | None:intergenic | 45.0% | |
| AAAAGCTGCCATGTCATCCT+CGG | + | chr7_1:55682084-55682103 | Msa1025270:CDS | 45.0% | |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_1:55682191-55682210 | None:intergenic | 45.0% | |
| TCATGTCATCAGCTTCAGCA+TGG | + | chr7_1:55682203-55682222 | Msa1025270:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_1:55682337-55682356 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_1:55682336-55682355 | Msa1025270:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_1:55682357-55682376 | None:intergenic | 45.0% | |
| !!! | TTTATATTTTTATTATTGTT+AGG | + | chr7_1:55682605-55682624 | Msa1025270:intron | 5.0% |
| !!! | TTTATATTTTTATTATTGTT+AGG | + | chr7_1:55682605-55682624 | Msa1025270:intron | 5.0% |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_1:55681998-55682017 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_1:55682040-55682059 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_1:55682047-55682066 | None:intergenic | 50.0% |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_1:55682175-55682194 | None:intergenic | 50.0% |
| GTCATCAGCTTCAGCATGGT+CGG | + | chr7_1:55682207-55682226 | Msa1025270:CDS | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_1:55682242-55682261 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_1:55682257-55682276 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_1:55682285-55682304 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_1:55682354-55682373 | None:intergenic | 50.0% | |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_1:55681998-55682017 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_1:55682040-55682059 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_1:55682047-55682066 | None:intergenic | 50.0% |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_1:55682175-55682194 | None:intergenic | 50.0% |
| GTCATCAGCTTCAGCATGGT+CGG | + | chr7_1:55682207-55682226 | Msa1025270:CDS | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_1:55682242-55682261 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_1:55682257-55682276 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_1:55682285-55682304 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_1:55682354-55682373 | None:intergenic | 50.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_1:55681995-55682014 | None:intergenic | 55.0% |
| TACGGACCAGACGGTTGAGA+CGG | - | chr7_1:55682022-55682041 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_1:55682131-55682150 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_1:55682129-55682148 | Msa1025270:CDS | 55.0% | |
| ATCAGCTTCAGCATGGTCGG+CGG | + | chr7_1:55682210-55682229 | Msa1025270:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_1:55682268-55682287 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_1:55682278-55682297 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_1:55682279-55682298 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_1:55682279-55682298 | Msa1025270:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_1:55682316-55682335 | None:intergenic | 55.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_1:55681995-55682014 | None:intergenic | 55.0% |
| TACGGACCAGACGGTTGAGA+CGG | - | chr7_1:55682022-55682041 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_1:55682131-55682150 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_1:55682129-55682148 | Msa1025270:CDS | 55.0% | |
| ATCAGCTTCAGCATGGTCGG+CGG | + | chr7_1:55682210-55682229 | Msa1025270:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_1:55682268-55682287 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_1:55682278-55682297 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_1:55682279-55682298 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_1:55682279-55682298 | Msa1025270:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_1:55682316-55682335 | None:intergenic | 55.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_1:55681919-55681938 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_1:55681954-55681973 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_1:55681979-55681998 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_1:55682005-55682024 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTGAGAC+GGG | - | chr7_1:55682021-55682040 | None:intergenic | 60.0% | |
| TGCCATGTCATCCTCGGCGA+CGG | + | chr7_1:55682090-55682109 | Msa1025270:CDS | 60.0% | |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_1:55682163-55682182 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_1:55682292-55682311 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_1:55682294-55682313 | Msa1025270:CDS | 60.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_1:55681919-55681938 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_1:55681954-55681973 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_1:55681979-55681998 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_1:55682005-55682024 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTGAGAC+GGG | - | chr7_1:55682021-55682040 | None:intergenic | 60.0% | |
| TGCCATGTCATCCTCGGCGA+CGG | + | chr7_1:55682090-55682109 | Msa1025270:CDS | 60.0% | |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_1:55682163-55682182 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_1:55682292-55682311 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_1:55682294-55682313 | Msa1025270:CDS | 60.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_1:55681924-55681943 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_1:55681953-55681972 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_1:55681965-55681984 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_1:55681966-55681985 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_1:55681977-55681996 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_1:55681978-55681997 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_1:55681980-55681999 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_1:55681984-55682003 | None:intergenic | 65.0% |
| CCAGACGGTTGAGACGGGTG+CGG | - | chr7_1:55682016-55682035 | None:intergenic | 65.0% | |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_1:55682031-55682050 | None:intergenic | 65.0% |
| TGCCGTCGCCGAGGATGACA+TGG | - | chr7_1:55682095-55682114 | None:intergenic | 65.0% | |
| ATCCTCGGCGACGGCAACGT+CGG | + | chr7_1:55682099-55682118 | Msa1025270:CDS | 65.0% | |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_1:55682160-55682179 | None:intergenic | 65.0% |
| GCATGGTCGGCGGTGATCAC+CGG | + | chr7_1:55682220-55682239 | Msa1025270:CDS | 65.0% | |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_1:55682311-55682330 | None:intergenic | 65.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_1:55681924-55681943 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_1:55681953-55681972 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_1:55681965-55681984 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_1:55681966-55681985 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_1:55681977-55681996 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_1:55681978-55681997 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_1:55681980-55681999 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_1:55681984-55682003 | None:intergenic | 65.0% |
| CCAGACGGTTGAGACGGGTG+CGG | - | chr7_1:55682016-55682035 | None:intergenic | 65.0% | |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_1:55682031-55682050 | None:intergenic | 65.0% |
| TGCCGTCGCCGAGGATGACA+TGG | - | chr7_1:55682095-55682114 | None:intergenic | 65.0% | |
| ATCCTCGGCGACGGCAACGT+CGG | + | chr7_1:55682099-55682118 | Msa1025270:CDS | 65.0% | |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_1:55682160-55682179 | None:intergenic | 65.0% |
| GCATGGTCGGCGGTGATCAC+CGG | + | chr7_1:55682220-55682239 | Msa1025270:CDS | 65.0% | |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_1:55682311-55682330 | None:intergenic | 65.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_1:55681925-55681944 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_1:55681940-55681959 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_1:55681941-55681960 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_1:55681947-55681966 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_1:55681960-55681979 | None:intergenic | 70.0% | |
| CCGCACCCGTCTCAACCGTC+TGG | + | chr7_1:55682013-55682032 | Msa1025270:CDS | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_1:55682140-55682159 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_1:55682158-55682177 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_1:55682159-55682178 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_1:55682299-55682318 | Msa1025270:CDS | 70.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_1:55681925-55681944 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_1:55681940-55681959 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_1:55681941-55681960 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_1:55681947-55681966 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_1:55681960-55681979 | None:intergenic | 70.0% | |
| CCGCACCCGTCTCAACCGTC+TGG | + | chr7_1:55682013-55682032 | Msa1025270:CDS | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_1:55682140-55682159 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_1:55682158-55682177 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_1:55682159-55682178 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_1:55682299-55682318 | Msa1025270:CDS | 70.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_1:55681939-55681958 | None:intergenic | 75.0% |
| TGCCGACGTTGCCGTCGCCG+AGG | - | chr7_1:55682104-55682123 | None:intergenic | 75.0% | |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_1:55682302-55682321 | Msa1025270:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_1:55682308-55682327 | None:intergenic | 75.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_1:55681939-55681958 | None:intergenic | 75.0% |
| TGCCGACGTTGCCGTCGCCG+AGG | - | chr7_1:55682104-55682123 | None:intergenic | 75.0% | |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_1:55682302-55682321 | Msa1025270:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_1:55682308-55682327 | None:intergenic | 75.0% | |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_1:55681932-55681951 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_1:55681935-55681954 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_1:55682151-55682170 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_1:55682155-55682174 | None:intergenic | 80.0% |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_1:55681932-55681951 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_1:55681935-55681954 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_1:55682151-55682170 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_1:55682155-55682174 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 55681910 | 55682790 | 55681910 | ID=Msa1025270;Name=Msa1025270 |
| chr7_1 | mRNA | 55681910 | 55682790 | 55681910 | ID=Msa1025270-mRNA-1;Parent=Msa1025270;Name=Msa1025270-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0.5|1|1|1|2|102|176 |
| chr7_1 | exon | 55681910 | 55682378 | 55681910 | ID=Msa1025270-mRNA-1:exon:11124;Parent=Msa1025270-mRNA-1 |
| chr7_1 | exon | 55682627 | 55682790 | 55682627 | ID=Msa1025270-mRNA-1:exon:11125;Parent=Msa1025270-mRNA-1 |
| chr7_1 | CDS | 55681910 | 55682378 | 55681910 | ID=Msa1025270-mRNA-1:cds;Parent=Msa1025270-mRNA-1 |
| chr7_1 | CDS | 55682627 | 55682688 | 55682627 | ID=Msa1025270-mRNA-1:cds;Parent=Msa1025270-mRNA-1 |
| chr7_1 | three_prime_UTR | 55682689 | 55682790 | 55682689 | ID=Msa1025270-mRNA-1:three_prime_utr;Parent=Msa1025270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
