Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050140 | XP_003623366.1 | 97.452 | 157 | 2 | 1 | 1 | 155 | 1 | 157 | 8.32e-107 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050140 | sp|O80920|PYL4_ARATH | 74.026 | 154 | 29 | 3 | 5 | 155 | 31 | 176 | 1.57e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050140 | G7KT83 | 97.452 | 157 | 2 | 1 | 1 | 155 | 1 | 157 | 3.97e-107 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629220 | Msa1050140 | 0.816453 | 5.487279e-52 | -8.615850e-47 |
| Msa0667010 | Msa1050140 | 0.835956 | 1.240779e-56 | -8.615850e-47 |
| Msa0219790 | Msa1050140 | 0.809837 | 1.553072e-50 | -8.615850e-47 |
| Msa0220960 | Msa1050140 | 0.823167 | 1.602261e-53 | -8.615850e-47 |
| Msa1025270 | Msa1050140 | 0.918303 | 1.840769e-86 | -8.615850e-47 |
| Msa1050140 | Msa1088460 | 0.896420 | 3.754568e-76 | -8.615850e-47 |
| Msa1050140 | Msa1153000 | 0.901406 | 2.767661e-78 | -8.615850e-47 |
| Msa1050140 | Msa1170840 | 0.835312 | 1.805521e-56 | -8.615850e-47 |
| Msa1050140 | Msa1433900 | 0.822030 | 2.945855e-53 | -8.615850e-47 |
| Msa1050140 | Msa1445040 | 0.839645 | 1.399506e-57 | -8.615850e-47 |
| Msa0300310 | Msa1050140 | 0.817972 | 2.498879e-52 | -8.615850e-47 |
| Msa0336610 | Msa1050140 | 0.810695 | 1.014389e-50 | -8.615850e-47 |
| Msa0337740 | Msa1050140 | 0.822803 | 1.947977e-53 | -8.615850e-47 |
| Msa0532210 | Msa1050140 | 0.837453 | 5.151366e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050140 | MtrunA17_Chr7g0243271 | 97.452 | 157 | 2 | 1 | 1 | 155 | 1 | 157 | 7.65e-111 | 313 |
| Msa1050140 | MtrunA17_Chr4g0005501 | 65.605 | 157 | 46 | 4 | 1 | 154 | 36 | 187 | 1.01e-68 | 207 |
| Msa1050140 | MtrunA17_Chr3g0114121 | 63.462 | 156 | 46 | 4 | 4 | 156 | 57 | 204 | 1.20e-63 | 195 |
| Msa1050140 | MtrunA17_Chr5g0437611 | 60.947 | 169 | 53 | 6 | 4 | 167 | 37 | 197 | 1.51e-61 | 189 |
| Msa1050140 | MtrunA17_Chr5g0411391 | 57.792 | 154 | 59 | 4 | 13 | 162 | 44 | 195 | 4.95e-51 | 163 |
| Msa1050140 | MtrunA17_Chr3g0126471 | 53.595 | 153 | 63 | 4 | 6 | 156 | 14 | 160 | 2.94e-50 | 160 |
| Msa1050140 | MtrunA17_Chr1g0158871 | 55.405 | 148 | 58 | 4 | 11 | 156 | 17 | 158 | 4.66e-50 | 159 |
| Msa1050140 | MtrunA17_Chr8g0347191 | 53.425 | 146 | 60 | 4 | 13 | 156 | 73 | 212 | 6.40e-50 | 160 |
| Msa1050140 | MtrunA17_Chr1g0151661 | 53.472 | 144 | 60 | 4 | 13 | 154 | 39 | 177 | 1.98e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050140 | AT2G38310.1 | 74.026 | 154 | 29 | 3 | 5 | 155 | 31 | 176 | 1.59e-69 | 210 |
| Msa1050140 | AT2G40330.1 | 60.510 | 157 | 56 | 3 | 2 | 155 | 37 | 190 | 1.56e-64 | 197 |
| Msa1050140 | AT5G05440.1 | 63.087 | 149 | 44 | 4 | 9 | 154 | 41 | 181 | 1.18e-61 | 189 |
| Msa1050140 | AT1G01360.1 | 54.545 | 143 | 57 | 3 | 16 | 156 | 24 | 160 | 1.16e-50 | 161 |
| Msa1050140 | AT5G53160.2 | 50.318 | 157 | 69 | 4 | 2 | 156 | 9 | 158 | 5.25e-50 | 159 |
| Msa1050140 | AT2G26040.1 | 52.632 | 152 | 61 | 3 | 8 | 154 | 17 | 162 | 2.98e-49 | 157 |
| Msa1050140 | AT4G01026.1 | 55.634 | 142 | 55 | 4 | 17 | 156 | 27 | 162 | 1.30e-48 | 157 |
| Msa1050140 | AT4G17870.1 | 50.000 | 166 | 74 | 4 | 1 | 162 | 5 | 165 | 3.76e-48 | 155 |
| Msa1050140 | AT4G27920.1 | 47.973 | 148 | 70 | 3 | 11 | 156 | 12 | 154 | 5.77e-45 | 146 |
| Msa1050140 | AT1G73000.1 | 48.026 | 152 | 71 | 4 | 11 | 154 | 34 | 185 | 4.78e-44 | 145 |
| Msa1050140 | AT5G46790.2 | 53.642 | 151 | 65 | 3 | 7 | 154 | 38 | 186 | 1.29e-38 | 131 |
| Msa1050140 | AT5G46790.1 | 53.642 | 151 | 65 | 3 | 7 | 154 | 38 | 186 | 1.29e-38 | 131 |
| Msa1050140 | AT5G45860.1 | 54.225 | 142 | 50 | 3 | 15 | 154 | 6 | 134 | 2.87e-38 | 129 |
| Msa1050140 | AT5G45870.1 | 53.383 | 133 | 53 | 2 | 26 | 156 | 10 | 135 | 7.91e-35 | 120 |
| Msa1050140 | AT5G53160.1 | 50.000 | 112 | 52 | 3 | 2 | 111 | 9 | 118 | 1.98e-32 | 114 |
| Msa1050140 | AT4G18620.1 | 50.355 | 141 | 57 | 3 | 24 | 156 | 7 | 142 | 4.18e-29 | 105 |
Find 66 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTAGCGGGCGATGGCGTC+GGG | 0.286221 | 7_2:-14041704 | None:intergenic |
| GGGACGGTGGTTGTTGGGTT+TGG | 0.316747 | 7_2:-14041683 | None:intergenic |
| TTAGTGAAACAATATTAAAA+AGG | 0.329127 | 7_2:-14042431 | None:intergenic |
| GTGGTAGCGGGCGATGGCGT+CGG | 0.350975 | 7_2:-14041705 | None:intergenic |
| GCGTCGGGGACGGTGGTTGT+TGG | 0.355449 | 7_2:-14041689 | None:intergenic |
| ACGGCGGAGCAACACTGGTT+GGG | 0.355563 | 7_2:-14041743 | None:intergenic |
| GTATCTTCAGTGGTGTTTCC+AGG | 0.355878 | 7_2:-14042121 | None:intergenic |
| CGTCGGGGACGGTGGTTGTT+GGG | 0.383221 | 7_2:-14041688 | None:intergenic |
| TCTTCGTCGGAGATCGGACT+AGG | 0.424642 | 7_2:-14042043 | None:intergenic |
| GACTGCGTGGGTGTGGTAGC+GGG | 0.430031 | 7_2:-14041717 | None:intergenic |
| AGACTGCGTGGGTGTGGTAG+CGG | 0.434046 | 7_2:-14041718 | None:intergenic |
| GCTGACAGCGGCGGGGAGGC+CGG | 0.435041 | 7_2:-14041915 | None:intergenic |
| GCGGGCGATGGCGTCGGGGA+CGG | 0.442801 | 7_2:-14041699 | None:intergenic |
| CGTTCGGTGCTGACAGCGGC+GGG | 0.446228 | 7_2:-14041923 | None:intergenic |
| CGGCGGAGCAACACTGGTTG+GGG | 0.450760 | 7_2:-14041742 | None:intergenic |
| GTGGGTGTGGTAGCGGGCGA+TGG | 0.478652 | 7_2:-14041711 | None:intergenic |
| GTCTAGGACTTCGAGACGTT+CGG | 0.489158 | 7_2:-14041939 | None:intergenic |
| CGTGAAGTCCGTGTCATCTC+CGG | 0.492295 | 7_2:+14041896 | Msa1050140:intron |
| GCATGATCGGTGGTGATCAC+CGG | 0.500077 | 7_2:+14041987 | Msa1050140:CDS |
| GGCGATGGCGTCGGGGACGG+TGG | 0.507167 | 7_2:-14041696 | None:intergenic |
| TACGTTGTTGATGTTCCACC+TGG | 0.511693 | 7_2:+14042103 | Msa1050140:CDS |
| GTCATCAGCTTCAGCATGAT+CGG | 0.512224 | 7_2:+14041974 | Msa1050140:CDS |
| ACTAAAGTGAAAATGAAACT+AGG | 0.515373 | 7_2:+14042449 | Msa1050140:three_prime_UTR |
| GACGGCGGAGCAACACTGGT+TGG | 0.519929 | 7_2:-14041744 | None:intergenic |
| CCGCACCCGTCTCAACCGTC+TGG | 0.521090 | 7_2:+14041780 | Msa1050140:CDS |
| AGTCCGATCTCCGACGAAGA+TGG | 0.524898 | 7_2:+14042046 | Msa1050140:CDS |
| ACGAAGTGTTTGTAGGCTTG+TGG | 0.526533 | 7_2:-14041827 | None:intergenic |
| TTGCCATCTTCGTCGGAGAT+CGG | 0.532468 | 7_2:-14042049 | None:intergenic |
| GAAGATGGCAACCACCGCTC+CGG | 0.541680 | 7_2:+14042061 | Msa1050140:CDS |
| CTAAAGTGAAAATGAAACTA+GGG | 0.543939 | 7_2:+14042450 | Msa1050140:three_prime_UTR |
| TGCCGTCACCGAGGATTACA+TGG | 0.548078 | 7_2:-14041859 | None:intergenic |
| TGACATGACGTTCATCGTCT+AGG | 0.555135 | 7_2:-14041955 | None:intergenic |
| CGGGGAGGCCGGAGATGACA+CGG | 0.556039 | 7_2:-14041904 | None:intergenic |
| TGCGGCGATTTGTTGGATGA+CGG | 0.556569 | 7_2:-14041762 | None:intergenic |
| TACGGACCAGACGGTTGAGA+CGG | 0.558831 | 7_2:-14041786 | None:intergenic |
| ATTGTCGAAGCGACGGACTA+CGG | 0.565639 | 7_2:-14041804 | None:intergenic |
| CAACCACCGTGCCGGAGCGG+TGG | 0.569837 | 7_2:-14042072 | None:intergenic |
| ACGTTCGGTGCTGACAGCGG+CGG | 0.570809 | 7_2:-14041924 | None:intergenic |
| TGCCATGTAATCCTCGGTGA+CGG | 0.575327 | 7_2:+14041857 | Msa1050140:CDS |
| CGGTGCTGACAGCGGCGGGG+AGG | 0.581007 | 7_2:-14041919 | None:intergenic |
| GGATTCAACAACCACCGTGC+CGG | 0.581765 | 7_2:-14042080 | None:intergenic |
| GCGGTGGTTGCCATCTTCGT+CGG | 0.582833 | 7_2:-14042056 | None:intergenic |
| AAAAGCTGCCATGTAATCCT+CGG | 0.586229 | 7_2:+14041851 | Msa1050140:CDS |
| GGATGACGGCGGAGCAACAC+TGG | 0.592996 | 7_2:-14041748 | None:intergenic |
| CTTCGTCGGAGATCGGACTA+GGG | 0.595738 | 7_2:-14042042 | None:intergenic |
| TCTTCAGTGGTGTTTCCAGG+TGG | 0.600688 | 7_2:-14042118 | None:intergenic |
| ACGGACCAGACGGTTGAGAC+GGG | 0.601122 | 7_2:-14041785 | None:intergenic |
| TGGCAACCACCGCTCCGGCA+CGG | 0.610622 | 7_2:+14042066 | Msa1050140:CDS |
| GGTGAAGAGTGGTGACAGAA+CGG | 0.622514 | 7_2:-14042021 | None:intergenic |
| GCGACGGACTACGGACCAGA+CGG | 0.625454 | 7_2:-14041795 | None:intergenic |
| AAACACACATGTATCTTCAG+TGG | 0.628787 | 7_2:-14042131 | None:intergenic |
| CAACCACCGCTCCGGCACGG+TGG | 0.633877 | 7_2:+14042069 | Msa1050140:CDS |
| CAACAACCACCGTGCCGGAG+CGG | 0.635412 | 7_2:-14042075 | None:intergenic |
| GGTAGCGGGCGATGGCGTCG+GGG | 0.638452 | 7_2:-14041703 | None:intergenic |
| GGCGGAGCAACACTGGTTGG+GGG | 0.641966 | 7_2:-14041741 | None:intergenic |
| CCAGACGGTTGAGACGGGTG+CGG | 0.647488 | 7_2:-14041780 | None:intergenic |
| GAGACGTTCGGTGCTGACAG+CGG | 0.650293 | 7_2:-14041927 | None:intergenic |
| ATCCTCGGTGACGGCAACGT+CGG | 0.652459 | 7_2:+14041866 | Msa1050140:CDS |
| ATCAGCTTCAGCATGATCGG+TGG | 0.655710 | 7_2:+14041977 | Msa1050140:CDS |
| GTTCGGTGCTGACAGCGGCG+GGG | 0.655778 | 7_2:-14041922 | None:intergenic |
| CAGAACGGTAGTTAGCAAGC+CGG | 0.656130 | 7_2:-14042006 | None:intergenic |
| GATCGGACTAGGGTGAAGAG+TGG | 0.660402 | 7_2:-14042032 | None:intergenic |
| CTTGTGGATTGTCGAAGCGA+CGG | 0.660521 | 7_2:-14041811 | None:intergenic |
| GGCGATTTGTTGGATGACGG+CGG | 0.674940 | 7_2:-14041759 | None:intergenic |
| TGCCGACGTTGCCGTCACCG+AGG | 0.697315 | 7_2:-14041868 | None:intergenic |
| AGGTGGAACATCAACAACGT+AGG | 0.714920 | 7_2:-14042101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTAAAAAAAAATTAAAG+AGG | - | chr7_2:14042259-14042278 | None:intergenic | 10.0% |
| !! | AAGTTAAAAAAAAATTAAAG+AGG | - | chr7_2:14042259-14042278 | None:intergenic | 10.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_2:14042434-14042453 | None:intergenic | 15.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_2:14042434-14042453 | None:intergenic | 15.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_2:14042149-14042168 | Msa1050140:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_2:14042420-14042439 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_2:14042449-14042468 | Msa1050140:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_2:14042450-14042469 | Msa1050140:three_prime_UTR | 25.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_2:14042149-14042168 | Msa1050140:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_2:14042420-14042439 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_2:14042449-14042468 | Msa1050140:three_prime_UTR | 25.0% |
| AAACACACATGTATCTTCAG+TGG | - | chr7_2:14042134-14042153 | None:intergenic | 35.0% | |
| AAACACACATGTATCTTCAG+TGG | - | chr7_2:14042134-14042153 | None:intergenic | 35.0% | |
| !! | GCTTTTGACGAAGTGTTTGT+AGG | - | chr7_2:14041837-14041856 | None:intergenic | 40.0% |
| AAAAGCTGCCATGTAATCCT+CGG | + | chr7_2:14041851-14041870 | Msa1050140:CDS | 40.0% | |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_2:14042180-14042199 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_2:14042189-14042208 | Msa1050140:intron | 40.0% |
| !! | GCTTTTGACGAAGTGTTTGT+AGG | - | chr7_2:14041837-14041856 | None:intergenic | 40.0% |
| AAAAGCTGCCATGTAATCCT+CGG | + | chr7_2:14041851-14041870 | Msa1050140:CDS | 40.0% | |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_2:14042180-14042199 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_2:14042189-14042208 | Msa1050140:intron | 40.0% |
| ! | ACGAAGTGTTTGTAGGCTTG+TGG | - | chr7_2:14041830-14041849 | None:intergenic | 45.0% |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_2:14041958-14041977 | None:intergenic | 45.0% | |
| GTCATCAGCTTCAGCATGAT+CGG | + | chr7_2:14041974-14041993 | Msa1050140:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_2:14042104-14042123 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_2:14042103-14042122 | Msa1050140:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_2:14042124-14042143 | None:intergenic | 45.0% | |
| ! | ACGAAGTGTTTGTAGGCTTG+TGG | - | chr7_2:14041830-14041849 | None:intergenic | 45.0% |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_2:14041958-14041977 | None:intergenic | 45.0% | |
| GTCATCAGCTTCAGCATGAT+CGG | + | chr7_2:14041974-14041993 | Msa1050140:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_2:14042104-14042123 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_2:14042103-14042122 | Msa1050140:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_2:14042124-14042143 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_2:14042356-14042375 | Msa1050140:intron | 5.0% |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_2:14042356-14042375 | Msa1050140:intron | 5.0% |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_2:14041765-14041784 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_2:14041807-14041826 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_2:14041814-14041833 | None:intergenic | 50.0% |
| TGCCATGTAATCCTCGGTGA+CGG | + | chr7_2:14041857-14041876 | Msa1050140:CDS | 50.0% | |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_2:14041942-14041961 | None:intergenic | 50.0% |
| ATCAGCTTCAGCATGATCGG+TGG | + | chr7_2:14041977-14041996 | Msa1050140:CDS | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_2:14042009-14042028 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_2:14042024-14042043 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_2:14042052-14042071 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_2:14042121-14042140 | None:intergenic | 50.0% | |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_2:14041765-14041784 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_2:14041807-14041826 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_2:14041814-14041833 | None:intergenic | 50.0% |
| TGCCATGTAATCCTCGGTGA+CGG | + | chr7_2:14041857-14041876 | Msa1050140:CDS | 50.0% | |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_2:14041942-14041961 | None:intergenic | 50.0% |
| ATCAGCTTCAGCATGATCGG+TGG | + | chr7_2:14041977-14041996 | Msa1050140:CDS | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_2:14042009-14042028 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_2:14042024-14042043 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_2:14042052-14042071 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_2:14042121-14042140 | None:intergenic | 50.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_2:14041762-14041781 | None:intergenic | 55.0% |
| TACGGACCAGACGGTTGAGA+CGG | - | chr7_2:14041789-14041808 | None:intergenic | 55.0% | |
| TGCCGTCACCGAGGATTACA+TGG | - | chr7_2:14041862-14041881 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_2:14041898-14041917 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_2:14041896-14041915 | Msa1050140:intron | 55.0% | |
| GCATGATCGGTGGTGATCAC+CGG | + | chr7_2:14041987-14042006 | Msa1050140:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_2:14042035-14042054 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_2:14042045-14042064 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_2:14042046-14042065 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_2:14042046-14042065 | Msa1050140:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_2:14042083-14042102 | None:intergenic | 55.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_2:14041762-14041781 | None:intergenic | 55.0% |
| TACGGACCAGACGGTTGAGA+CGG | - | chr7_2:14041789-14041808 | None:intergenic | 55.0% | |
| TGCCGTCACCGAGGATTACA+TGG | - | chr7_2:14041862-14041881 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_2:14041898-14041917 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_2:14041896-14041915 | Msa1050140:intron | 55.0% | |
| GCATGATCGGTGGTGATCAC+CGG | + | chr7_2:14041987-14042006 | Msa1050140:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_2:14042035-14042054 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_2:14042045-14042064 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_2:14042046-14042065 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_2:14042046-14042065 | Msa1050140:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_2:14042083-14042102 | None:intergenic | 55.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_2:14041686-14041705 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_2:14041721-14041740 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_2:14041746-14041765 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_2:14041772-14041791 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTGAGAC+GGG | - | chr7_2:14041788-14041807 | None:intergenic | 60.0% | |
| ! | ATCCTCGGTGACGGCAACGT+CGG | + | chr7_2:14041866-14041885 | Msa1050140:CDS | 60.0% |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_2:14041930-14041949 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_2:14042059-14042078 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_2:14042061-14042080 | Msa1050140:CDS | 60.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_2:14041686-14041705 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_2:14041721-14041740 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_2:14041746-14041765 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_2:14041772-14041791 | None:intergenic | 60.0% | |
| ACGGACCAGACGGTTGAGAC+GGG | - | chr7_2:14041788-14041807 | None:intergenic | 60.0% | |
| ! | ATCCTCGGTGACGGCAACGT+CGG | + | chr7_2:14041866-14041885 | Msa1050140:CDS | 60.0% |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_2:14041930-14041949 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_2:14042059-14042078 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_2:14042061-14042080 | Msa1050140:CDS | 60.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_2:14041691-14041710 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_2:14041720-14041739 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_2:14041732-14041751 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_2:14041733-14041752 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_2:14041744-14041763 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_2:14041745-14041764 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_2:14041747-14041766 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_2:14041751-14041770 | None:intergenic | 65.0% |
| CCAGACGGTTGAGACGGGTG+CGG | - | chr7_2:14041783-14041802 | None:intergenic | 65.0% | |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_2:14041798-14041817 | None:intergenic | 65.0% |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_2:14041927-14041946 | None:intergenic | 65.0% |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_2:14042078-14042097 | None:intergenic | 65.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_2:14041691-14041710 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_2:14041720-14041739 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_2:14041732-14041751 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_2:14041733-14041752 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_2:14041744-14041763 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_2:14041745-14041764 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_2:14041747-14041766 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_2:14041751-14041770 | None:intergenic | 65.0% |
| CCAGACGGTTGAGACGGGTG+CGG | - | chr7_2:14041783-14041802 | None:intergenic | 65.0% | |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_2:14041798-14041817 | None:intergenic | 65.0% |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_2:14041927-14041946 | None:intergenic | 65.0% |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_2:14042078-14042097 | None:intergenic | 65.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_2:14041692-14041711 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_2:14041707-14041726 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_2:14041708-14041727 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_2:14041714-14041733 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_2:14041727-14041746 | None:intergenic | 70.0% | |
| CCGCACCCGTCTCAACCGTC+TGG | + | chr7_2:14041780-14041799 | Msa1050140:CDS | 70.0% | |
| TGCCGACGTTGCCGTCACCG+AGG | - | chr7_2:14041871-14041890 | None:intergenic | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_2:14041907-14041926 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_2:14041925-14041944 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_2:14041926-14041945 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_2:14042066-14042085 | Msa1050140:CDS | 70.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_2:14041692-14041711 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_2:14041707-14041726 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_2:14041708-14041727 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_2:14041714-14041733 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_2:14041727-14041746 | None:intergenic | 70.0% | |
| CCGCACCCGTCTCAACCGTC+TGG | + | chr7_2:14041780-14041799 | Msa1050140:CDS | 70.0% | |
| TGCCGACGTTGCCGTCACCG+AGG | - | chr7_2:14041871-14041890 | None:intergenic | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_2:14041907-14041926 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_2:14041925-14041944 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_2:14041926-14041945 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_2:14042066-14042085 | Msa1050140:CDS | 70.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_2:14041706-14041725 | None:intergenic | 75.0% |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_2:14042069-14042088 | Msa1050140:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_2:14042075-14042094 | None:intergenic | 75.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_2:14041706-14041725 | None:intergenic | 75.0% |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_2:14042069-14042088 | Msa1050140:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_2:14042075-14042094 | None:intergenic | 75.0% | |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_2:14041699-14041718 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_2:14041702-14041721 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_2:14041918-14041937 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_2:14041922-14041941 | None:intergenic | 80.0% |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_2:14041699-14041718 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_2:14041702-14041721 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_2:14041918-14041937 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_2:14041922-14041941 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 14041677 | 14042472 | 14041677 | ID=Msa1050140;Name=Msa1050140 |
| chr7_2 | mRNA | 14041677 | 14042472 | 14041677 | ID=Msa1050140-mRNA-1;Parent=Msa1050140;Name=Msa1050140-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0.33|1|0|0|3|33|174 |
| chr7_2 | exon | 14041677 | 14041896 | 14041677 | ID=Msa1050140-mRNA-1:exon:3440;Parent=Msa1050140-mRNA-1 |
| chr7_2 | exon | 14041903 | 14042145 | 14041903 | ID=Msa1050140-mRNA-1:exon:3441;Parent=Msa1050140-mRNA-1 |
| chr7_2 | exon | 14042378 | 14042472 | 14042378 | ID=Msa1050140-mRNA-1:exon:3442;Parent=Msa1050140-mRNA-1 |
| chr7_2 | CDS | 14041677 | 14041896 | 14041677 | ID=Msa1050140-mRNA-1:cds;Parent=Msa1050140-mRNA-1 |
| chr7_2 | CDS | 14041903 | 14042145 | 14041903 | ID=Msa1050140-mRNA-1:cds;Parent=Msa1050140-mRNA-1 |
| chr7_2 | CDS | 14042378 | 14042439 | 14042378 | ID=Msa1050140-mRNA-1:cds;Parent=Msa1050140-mRNA-1 |
| chr7_2 | three_prime_UTR | 14042440 | 14042472 | 14042440 | ID=Msa1050140-mRNA-1:three_prime_utr;Parent=Msa1050140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
