AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336610 MtrunA17_Chr2g0323011 95.528 246 11 0 1 246 1 246 3.22e-177 486
Msa0336610 MtrunA17_Chr2g0322981 75.610 246 60 0 1 246 1 246 3.67e-129 365
Msa0336610 MtrunA17_Chr7g0234231 36.797 231 142 2 14 243 9 236 1.95e-52 170
Msa0336610 MtrunA17_Chr1g0206531 38.525 244 141 6 6 243 9 249 8.02e-50 172
Msa0336610 MtrunA17_Chr6g0474901 36.400 250 148 4 1 245 1 244 5.33e-46 164
Msa0336610 MtrunA17_Chr6g0474901 38.235 170 102 2 77 243 313 482 4.17e-33 126
Msa0336610 MtrunA17_Chr5g0428591 35.802 243 149 4 5 243 4 243 2.16e-45 153
Msa0336610 MtrunA17_Chr6g0475001 37.945 253 147 6 1 245 1 251 4.95e-45 160
Msa0336610 MtrunA17_Chr6g0475001 38.506 174 99 3 78 246 321 491 3.53e-31 120
Msa0336610 MtrunA17_Chr1g0206351 39.189 222 128 4 29 245 35 254 8.87e-43 153
Msa0336610 MtrunA17_Chr1g0206291 33.071 254 160 6 1 245 13 265 4.48e-41 147
Msa0336610 MtrunA17_Chr6g0474811 37.838 259 140 7 1 245 1 252 3.43e-40 147
Msa0336610 MtrunA17_Chr6g0474811 33.778 225 139 4 22 243 274 491 5.25e-31 120
Msa0336610 MtrunA17_Chr1g0206461 34.836 244 152 6 4 243 6 246 1.06e-38 142
Msa0336610 MtrunA17_Chr6g0475091 37.615 218 131 1 33 245 43 260 5.01e-38 140
Msa0336610 MtrunA17_Chr6g0475091 36.181 199 119 3 48 243 305 498 6.21e-34 129
Msa0336610 MtrunA17_Chr3g0081001 32.377 244 161 3 5 245 4 246 5.50e-38 140
Msa0336610 MtrunA17_Chr6g0474871 34.241 257 149 4 1 245 1 249 5.96e-38 140
Msa0336610 MtrunA17_Chr6g0474871 33.333 228 142 4 22 246 269 489 8.01e-34 129
Msa0336610 MtrunA17_Chr1g0154311 34.156 243 145 6 6 239 10 246 7.25e-38 140
Msa0336610 MtrunA17_Chr1g0206571 34.703 219 132 6 30 239 35 251 2.20e-37 133
Msa0336610 MtrunA17_Chr1g0154371 35.802 243 141 8 6 239 24 260 2.93e-37 138
Msa0336610 MtrunA17_Chr3g0081011 33.175 211 139 2 33 243 35 243 3.36e-37 138
Msa0336610 MtrunA17_Chr1g0206521 36.735 245 147 5 4 243 648 889 3.70e-37 138
Msa0336610 MtrunA17_Chr1g0206521 38.532 218 128 5 29 243 33 247 5.17e-37 138
Msa0336610 MtrunA17_Chr3g0081031 30.522 249 161 5 5 243 11 257 3.97e-37 137
Msa0336610 MtrunA17_Chr3g0081051 29.960 247 163 5 1 244 1 240 4.72e-37 131
Msa0336610 MtrunA17_Chr1g0154361 33.468 248 150 7 6 243 8 250 4.72e-37 132
Msa0336610 MtrunA17_Chr5g0428531 33.603 247 142 6 10 243 9 246 5.70e-37 132
Msa0336610 MtrunA17_Chr5g0394001 34.426 244 155 3 4 243 6 248 6.47e-37 137
Msa0336610 MtrunA17_Chr6g0474971 33.074 257 147 6 1 245 1 244 8.16e-37 131
Msa0336610 MtrunA17_Chr5g0394021 35.391 243 148 5 5 243 9 246 9.64e-37 136
Msa0336610 MtrunA17_Chr1g0205771 33.641 217 142 1 32 246 44 260 1.09e-36 136
Msa0336610 MtrunA17_Chr6g0475201 36.179 246 143 6 6 245 13 250 1.15e-36 137
Msa0336610 MtrunA17_Chr6g0475201 38.922 167 99 2 80 243 323 489 4.95e-33 126
Msa0336610 MtrunA17_Chr6g0475111 34.146 246 156 5 3 243 7 251 1.99e-36 136
Msa0336610 MtrunA17_Chr6g0475111 34.529 223 135 4 29 246 287 503 1.29e-34 131
Msa0336610 MtrunA17_Chr8g0347571 38.462 169 100 1 75 243 77 241 2.62e-36 135
Msa0336610 MtrunA17_Chr8g0347571 34.599 237 141 5 18 246 259 489 4.30e-34 129
Msa0336610 MtrunA17_Chr1g0154341 33.600 250 145 9 7 239 1 246 4.89e-36 129
Msa0336610 MtrunA17_Chr1g0206601 33.200 250 148 9 7 239 22 269 5.07e-36 129
Msa0336610 MtrunA17_Chr1g0206361 35.242 227 138 5 23 243 29 252 7.60e-36 134
Msa0336610 MtrunA17_Chr5g0428571 36.792 212 128 3 35 243 36 244 8.36e-36 133
Msa0336610 MtrunA17_Chr8g0354421 30.041 243 166 2 4 243 27 268 2.27e-35 133
Msa0336610 MtrunA17_Chr5g0393981 39.024 205 112 5 47 243 117 316 8.36e-35 131
Msa0336610 MtrunA17_Chr5g0394011 32.227 211 136 5 39 243 41 250 1.19e-34 130
Msa0336610 MtrunA17_Chr6g0474861 34.661 251 153 7 1 246 1 245 2.53e-34 129
Msa0336610 MtrunA17_Chr6g0475121 36.723 177 105 2 75 245 76 251 3.70e-34 129
Msa0336610 MtrunA17_Chr6g0475121 36.527 167 103 2 80 243 323 489 4.63e-31 120
Msa0336610 MtrunA17_Chr6g0475121 27.801 241 133 7 28 238 141 370 1.21e-14 72.8
Msa0336610 MtrunA17_Chr8g0354351 29.752 242 162 5 1 239 1 237 1.29e-33 127
Msa0336610 MtrunA17_Chr1g0206231 32.283 254 153 4 11 245 1 254 2.52e-33 127
Msa0336610 MtrunA17_Chr1g0206201 30.364 247 170 2 1 245 8 254 2.87e-33 121
Msa0336610 MtrunA17_Chr1g0206651 31.349 252 159 6 3 243 1 249 3.76e-33 120
Msa0336610 MtrunA17_Chr1g0206451 35.628 247 150 6 4 243 40 284 8.56e-33 125
Msa0336610 MtrunA17_Chr1g0206331 34.389 221 130 6 33 243 36 251 8.91e-32 122
Msa0336610 MtrunA17_Chr1g0206561 34.579 214 133 5 34 243 27 237 1.54e-31 122
Msa0336610 MtrunA17_Chr1g0154351 32.922 243 148 7 6 239 10 246 3.56e-31 120
Msa0336610 MtrunA17_Chr2g0280391 32.500 200 129 4 45 243 51 245 2.99e-30 114
Msa0336610 MtrunA17_Chr2g0280361 31.156 199 131 4 46 243 47 240 7.16e-30 112
Msa0336610 MtrunA17_Chr8g0354411 27.064 218 155 2 29 243 30 246 1.42e-29 112
Msa0336610 MtrunA17_Chr8g0354341 31.308 214 142 3 29 239 29 240 1.94e-29 111
Msa0336610 MtrunA17_Chr1g0206251 33.333 234 139 6 20 243 282 508 2.22e-29 115
Msa0336610 MtrunA17_Chr1g0206251 31.638 177 108 4 80 245 91 265 7.98e-17 79.3
Msa0336610 MtrunA17_Chr1g0154321 32.016 253 149 9 7 239 1 250 1.31e-28 114
Msa0336610 MtrunA17_Chr8g0354441 28.926 242 157 4 10 239 12 250 3.17e-28 112
Msa0336610 MtrunA17_Chr8g0354271 30.864 243 155 6 11 243 8 247 9.78e-28 111
Msa0336610 MtrunA17_Chr8g0354431 30.522 249 159 6 8 246 5 249 6.66e-26 105
Msa0336610 MtrunA17_Chr8g0354281 29.032 217 151 3 29 243 30 245 1.05e-25 105
Msa0336610 MtrunA17_Chr1g0206401 31.416 226 138 7 30 245 29 247 2.74e-25 103
Msa0336610 MtrunA17_Chr3g0119041 31.061 264 162 5 1 246 2 263 1.53e-24 102
Msa0336610 MtrunA17_Chr7g0230381 30.000 240 142 9 7 238 20 241 5.32e-24 97.1
Msa0336610 MtrunA17_Chr5g0426941 28.452 239 163 4 11 243 3 239 1.15e-23 99.4
Msa0336610 MtrunA17_Chr2g0280381 29.439 214 136 7 33 243 38 239 6.22e-23 94.4
Msa0336610 MtrunA17_Chr1g0206381 29.515 227 145 6 30 245 30 252 1.17e-22 94.7
Msa0336610 MtrunA17_Chr1g0206581 24.809 262 163 7 1 238 21 272 1.07e-19 85.9
Msa0336610 MtrunA17_Chr3g0110311 28.866 194 124 3 45 238 42 221 4.20e-19 84.0
Msa0336610 MtrunA17_Chr5g0434531 27.826 230 155 3 9 238 8 226 1.01e-18 82.8
Msa0336610 MtrunA17_Chr5g0428601 38.525 122 72 2 124 243 1 121 3.15e-18 82.8
Msa0336610 MtrunA17_Chr6g0474961 39.806 103 57 2 149 246 6 108 2.14e-15 73.2
Msa0336610 MtrunA17_Chr1g0206421 34.043 141 81 4 82 210 11 151 3.66e-15 74.3
Msa0336610 MtrunA17_Chr8g0391511 25.463 216 141 6 29 238 33 234 6.60e-13 67.0
Msa0336610 MtrunA17_Chr6g0477591 36.620 71 45 0 80 150 2 72 7.67e-13 62.8
Msa0336610 MtrunA17_Chr3g0082951 33.663 101 66 1 33 133 122 221 2.28e-12 64.3
Msa0336610 MtrunA17_Chr6g0477581 35.135 74 46 1 85 156 1 74 5.23e-12 60.8
Msa0336610 MtrunA17_Chr4g0058891 24.286 210 145 7 35 243 40 236 5.46e-12 65.1
Msa0336610 MtrunA17_Chr1g0206171 45.455 66 34 1 178 243 39 102 1.11e-11 60.8
Msa0336610 MtrunA17_Chr7g0262011 25.000 244 163 5 7 242 74 305 5.77e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336610 AT3G22060.1 56.379 243 99 4 6 245 12 250 9.27e-92 271
Msa0336610 AT3G58310.1 50.455 220 101 4 29 244 39 254 1.01e-68 213
Msa0336610 AT4G20640.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20630.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20580.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20600.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20620.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20610.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20590.1 42.478 226 117 6 29 245 34 255 1.15e-52 171
Msa0336610 AT4G20670.1 42.478 226 117 6 29 245 34 255 1.28e-52 171
Msa0336610 AT4G20570.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT4G20560.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT4G20540.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT4G20645.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT4G20530.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT4G20550.1 42.478 226 117 6 29 245 48 269 1.35e-52 171
Msa0336610 AT3G21990.1 41.593 226 119 6 29 245 34 255 2.04e-51 168
Msa0336610 AT4G05200.1 36.290 248 143 5 6 246 11 250 1.57e-50 175
Msa0336610 AT3G21960.1 41.593 226 119 5 29 245 40 261 1.71e-50 166
Msa0336610 AT4G05200.2 36.290 248 143 5 6 246 29 268 1.94e-50 175
Msa0336610 AT2G31620.1 42.920 226 115 6 29 245 34 254 5.73e-49 162
Msa0336610 AT5G48540.1 35.685 241 151 3 6 243 1 240 9.07e-49 161
Msa0336610 AT3G22010.1 39.912 228 121 8 29 245 40 262 1.07e-45 154
Msa0336610 AT3G21940.1 40.417 240 110 7 29 245 45 274 2.07e-45 153
Msa0336610 AT3G21940.2 44.944 178 77 3 88 245 3 179 1.64e-43 145
Msa0336610 AT4G20680.1 40.086 232 119 9 29 245 40 266 4.12e-43 147
Msa0336610 AT3G22050.1 46.471 170 79 5 86 246 92 258 5.18e-43 146
Msa0336610 AT3G22040.1 39.394 231 116 9 29 245 36 256 1.56e-41 142
Msa0336610 AT3G22000.1 39.224 232 121 9 29 245 40 266 1.90e-41 143
Msa0336610 AT3G21970.1 35.622 233 136 6 27 246 33 264 4.30e-39 137
Msa0336610 AT3G21910.1 36.522 230 129 6 29 244 40 266 8.91e-39 136
Msa0336610 AT4G23170.1 33.188 229 142 5 25 246 23 247 3.69e-37 132
Msa0336610 AT4G23130.3 38.053 226 127 7 27 246 28 246 2.49e-35 132
Msa0336610 AT4G23130.1 38.053 226 127 7 27 246 28 246 3.83e-35 132
Msa0336610 AT4G23130.2 38.053 226 127 7 27 246 28 246 4.38e-35 132
Msa0336610 AT4G23230.1 34.389 221 134 5 31 246 29 243 5.77e-35 132
Msa0336610 AT3G21900.2 33.878 245 149 8 6 244 11 248 6.07e-35 125
Msa0336610 AT4G23180.3 34.468 235 124 6 27 246 36 255 2.82e-34 129
Msa0336610 AT4G21230.1 37.089 213 121 5 35 243 37 240 4.78e-34 129
Msa0336610 AT4G23180.2 34.468 235 124 6 27 246 36 255 5.59e-34 129
Msa0336610 AT4G23180.1 34.599 237 121 7 27 246 36 255 1.27e-33 128
Msa0336610 AT4G38830.1 33.784 222 138 5 28 243 26 244 4.45e-33 126
Msa0336610 AT1G61750.1 35.874 223 134 6 23 239 22 241 4.73e-33 122
Msa0336610 AT4G23150.1 35.683 227 135 6 27 246 25 247 4.73e-33 126
Msa0336610 AT4G23160.1 32.735 223 141 4 29 246 46 264 3.06e-32 124
Msa0336610 AT4G23160.3 32.735 223 141 4 29 246 626 844 4.14e-32 124
Msa0336610 AT4G23160.2 32.735 223 141 4 29 246 626 844 4.14e-32 124
Msa0336610 AT3G21920.1 35.217 230 134 6 29 244 40 268 1.70e-31 117
Msa0336610 AT3G21930.1 35.217 230 134 6 29 244 40 268 1.75e-31 117
Msa0336610 AT3G21920.2 35.217 230 134 6 29 244 62 290 2.44e-31 117
Msa0336610 AT3G22030.1 43.919 148 65 6 110 245 111 252 2.74e-31 116
Msa0336610 AT3G29040.1 30.038 263 159 7 1 246 1 255 3.22e-31 116
Msa0336610 AT4G21410.2 29.762 252 165 7 1 243 1 249 9.87e-31 119
Msa0336610 AT4G21410.3 30.603 232 153 6 17 243 21 249 2.56e-30 119
Msa0336610 AT3G21900.1 32.245 245 145 8 6 244 11 240 3.45e-30 113
Msa0336610 AT1G63550.1 29.464 224 150 3 21 239 24 244 2.45e-28 110
Msa0336610 AT4G23280.3 32.143 224 138 5 29 246 29 244 2.74e-28 113
Msa0336610 AT4G23270.2 32.735 223 139 4 29 246 26 242 2.74e-28 113
Msa0336610 AT4G23270.1 32.735 223 139 4 29 246 26 242 2.74e-28 113
Msa0336610 AT4G23280.2 32.143 224 138 5 29 246 29 244 2.90e-28 113
Msa0336610 AT4G23270.3 32.735 223 139 4 29 246 26 242 2.97e-28 113
Msa0336610 AT4G23280.1 32.143 224 138 5 29 246 29 244 3.24e-28 112
Msa0336610 AT4G23310.1 31.120 241 153 7 7 240 117 351 4.71e-28 112
Msa0336610 AT4G23310.1 28.125 224 146 7 24 238 22 239 5.82e-16 77.4
Msa0336610 AT4G23220.1 30.734 218 142 5 33 243 25 240 4.84e-28 112
Msa0336610 AT4G23310.2 31.120 241 153 7 7 240 117 351 4.92e-28 112
Msa0336610 AT4G23310.2 28.319 226 143 7 24 238 22 239 7.20e-16 77.0
Msa0336610 AT3G29050.2 31.250 240 138 8 29 244 38 274 3.64e-27 106
Msa0336610 AT4G23140.2 32.314 229 140 6 27 246 26 248 4.98e-27 109
Msa0336610 AT4G23140.1 32.314 229 140 6 27 246 26 248 5.20e-27 109
Msa0336610 AT3G21980.1 29.646 226 115 6 29 245 34 224 7.13e-27 103
Msa0336610 AT4G23200.2 28.631 241 159 5 14 243 5 243 5.14e-25 103
Msa0336610 AT4G23200.1 28.631 241 159 5 14 243 5 243 7.05e-25 103
Msa0336610 AT4G21400.3 30.317 221 147 5 28 243 33 251 8.23e-25 102
Msa0336610 AT4G21400.6 30.317 221 147 5 28 243 33 251 1.04e-24 102
Msa0336610 AT4G21400.4 30.317 221 147 5 28 243 33 251 1.04e-24 102
Msa0336610 AT4G21400.5 30.317 221 147 5 28 243 33 251 1.04e-24 102
Msa0336610 AT4G21400.2 30.317 221 147 5 28 243 33 251 1.09e-24 102
Msa0336610 AT4G11460.3 28.340 247 157 7 14 243 7 250 1.17e-24 102
Msa0336610 AT4G11460.1 28.340 247 157 7 14 243 7 250 1.25e-24 102
Msa0336610 AT4G21400.1 30.317 221 147 5 28 243 33 251 1.31e-24 102
Msa0336610 AT1G63590.1 28.899 218 140 5 33 240 33 245 1.44e-23 96.3
Msa0336610 AT1G63600.1 28.571 217 143 4 32 239 39 252 2.33e-23 96.7
Msa0336610 AT4G11521.1 29.730 222 132 6 37 243 29 241 2.67e-23 95.5
Msa0336610 AT4G21400.7 28.495 186 129 3 62 243 40 225 5.86e-23 97.8
Msa0336610 AT1G63570.3 28.319 226 153 4 21 241 21 242 1.32e-22 94.0
Msa0336610 AT1G63570.1 28.319 226 153 4 21 241 21 242 1.32e-22 94.0
Msa0336610 AT3G60720.2 28.571 203 133 3 39 238 39 232 1.55e-22 93.2
Msa0336610 AT3G60720.1 28.571 203 133 3 39 238 39 232 2.12e-22 93.2
Msa0336610 AT3G60720.3 28.571 203 133 3 39 238 39 232 2.46e-22 93.2
Msa0336610 AT1G63570.2 28.319 226 153 4 21 241 74 295 2.97e-22 94.0
Msa0336610 AT3G45860.1 33.040 227 134 7 29 246 32 249 6.47e-22 94.7
Msa0336610 AT3G22020.2 40.411 146 74 6 86 222 58 199 4.62e-21 88.2
Msa0336610 AT3G22020.1 40.411 146 74 6 86 222 58 199 4.62e-21 88.2
Msa0336610 AT2G01660.2 27.386 241 159 5 3 239 2 230 4.94e-21 89.4
Msa0336610 AT1G70690.1 26.337 243 158 5 4 240 7 234 6.86e-21 89.7
Msa0336610 AT2G01660.3 27.500 240 158 5 3 238 2 229 7.21e-21 89.4
Msa0336610 AT2G01660.1 27.500 240 158 5 3 238 2 229 7.39e-21 89.4
Msa0336610 AT4G11530.1 27.490 251 164 7 5 243 2 246 1.05e-20 91.3
Msa0336610 AT4G11460.2 28.571 175 111 3 83 243 1 175 1.56e-20 90.5
Msa0336610 AT5G41290.1 26.126 222 153 5 27 241 27 244 8.21e-20 86.7
Msa0336610 AT5G37660.2 29.767 215 131 6 29 239 38 236 8.89e-19 84.0
Msa0336610 AT5G37660.1 29.767 215 131 6 29 239 38 236 1.18e-18 83.2
Msa0336610 AT4G23300.1 28.319 226 144 6 35 245 30 252 1.51e-17 82.0
Msa0336610 AT1G63580.1 26.341 205 139 5 45 240 37 238 1.86e-17 79.7
Msa0336610 AT4G23210.1 27.642 246 159 7 16 245 10 252 2.56e-17 81.3
Msa0336610 AT4G23210.3 27.876 226 145 6 35 245 30 252 3.29e-17 80.9
Msa0336610 AT4G23210.2 27.876 226 145 6 35 245 30 252 3.37e-17 80.9
Msa0336610 AT4G23210.4 27.876 226 145 6 35 245 30 252 3.37e-17 80.9
Msa0336610 AT4G23210.5 27.642 246 159 7 16 245 10 252 3.58e-17 80.9
Msa0336610 AT5G41300.1 25.397 252 157 7 3 240 13 247 4.71e-17 79.0
Msa0336610 AT4G11490.1 25.306 245 164 7 13 244 8 246 7.13e-17 80.1
Msa0336610 AT4G04500.1 25.269 186 124 3 75 245 69 254 1.21e-16 79.3
Msa0336610 AT4G04500.2 25.405 185 123 3 76 245 70 254 1.46e-16 79.0
Msa0336610 AT4G04500.3 25.405 185 123 3 76 245 70 254 1.46e-16 79.0
Msa0336610 AT4G23260.2 24.554 224 153 6 33 243 30 250 2.50e-16 78.6
Msa0336610 AT4G23260.1 24.554 224 153 6 33 243 30 250 2.89e-16 78.2
Msa0336610 AT4G23190.1 25.676 222 151 5 34 243 29 248 3.61e-16 77.8
Msa0336610 AT4G00970.1 28.378 222 147 8 24 239 41 256 4.35e-16 77.8
Msa0336610 AT4G23190.2 25.676 222 151 5 34 243 29 248 4.59e-16 77.4
Msa0336610 AT4G00970.2 28.378 222 147 8 24 239 41 256 4.71e-16 77.4
Msa0336610 AT4G11480.2 23.529 238 155 7 16 239 10 234 3.04e-14 72.0
Msa0336610 AT4G11480.3 23.529 238 155 7 16 239 10 234 3.18e-14 72.0
Msa0336610 AT4G11480.1 23.529 238 155 7 16 239 10 234 3.34e-14 72.0
Msa0336610 AT4G23240.1 24.658 219 154 6 33 243 29 244 3.35e-14 72.0
Msa0336610 AT4G11480.4 23.529 238 155 7 16 239 10 234 3.46e-14 72.0
Msa0336610 AT5G40380.3 26.141 241 157 8 7 243 13 236 4.67e-14 71.6
Msa0336610 AT5G40380.1 26.141 241 157 8 7 243 13 236 4.77e-14 71.6
Msa0336610 AT5G40380.2 26.141 241 157 8 7 243 13 236 5.63e-14 71.2
Msa0336610 AT3G21945.1 35.593 118 66 3 29 144 39 148 9.37e-14 67.4
Msa0336610 AT4G23250.1 25.328 229 150 6 33 243 30 255 1.84e-13 70.1
Msa0336610 AT4G23250.3 25.328 229 150 6 33 243 30 255 2.42e-13 69.7
Msa0336610 AT4G23320.2 45.588 68 36 1 178 244 40 107 2.49e-13 69.3
Msa0336610 AT4G23320.1 45.588 68 36 1 178 244 40 107 2.49e-13 69.3
Msa0336610 AT4G23250.2 25.328 229 150 6 33 243 30 255 2.52e-13 69.7
Msa0336610 AT4G23320.3 45.588 68 36 1 178 244 61 128 2.63e-13 69.3
Msa0336610 AT4G23290.2 24.336 226 138 8 39 244 35 247 2.67e-13 69.3
Msa0336610 AT4G23190.3 26.471 170 114 3 85 243 1 170 6.34e-13 68.2
Msa0336610 AT4G23190.4 26.471 170 114 3 85 243 1 170 6.34e-13 68.2
Msa0336610 AT3G29050.1 42.667 75 37 2 175 244 156 229 8.68e-13 66.2
Msa0336610 AT5G41280.1 24.468 188 125 4 58 239 67 243 3.90e-12 65.1
Msa0336610 AT4G11470.1 23.108 251 155 7 16 243 10 245 7.51e-12 65.1
Msa0336610 AT4G11470.2 23.108 251 155 7 16 243 15 250 7.81e-12 65.1

Find 52 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGCTTATTTAAATATT+TGG 0.126781 2_4:+56032795 Msa0336610:CDS
GAGGAATCAAAGAAACTTTA+TGG 0.133498 2_4:+56032988 Msa0336610:CDS
TCTCCTGTTGCATACAATTT+AGG 0.167557 2_4:-56032955 None:intergenic
GTCCATATGCTTGTTGGTTT+TGG 0.242106 2_4:-56032657 None:intergenic
TTCCTTATCCAAACATCTTT+TGG 0.253049 2_4:+56032484 Msa0336610:CDS
GCAGCGACTTTGGATTTCTT+TGG 0.313046 2_4:-56032740 None:intergenic
AATTACTACTCTTTGACAAA+TGG 0.325890 2_4:-56033156 None:intergenic
TATTTGGATACGGATTTCTT+TGG 0.335708 2_4:+56032811 Msa0336610:CDS
AAGACCCCTTCAACAGGTTT+TGG 0.346376 2_4:+56032607 Msa0336610:CDS
AGGAATCAAAGAAACTTTAT+GGG 0.353600 2_4:+56032989 Msa0336610:CDS
AAGAAGGAGGTAGAGTTGTT+GGG 0.371129 2_4:+56033103 Msa0336610:CDS
ATATGGACTCGCCCTTTGTC+GGG 0.372869 2_4:+56032672 Msa0336610:CDS
CATATGGACTCGCCCTTTGT+CGG 0.379449 2_4:+56032671 Msa0336610:CDS
TGTTGTATGGGCAGCGACTT+TGG 0.392266 2_4:-56032750 None:intergenic
ATTACTACTCTTTGACAAAT+GGG 0.398241 2_4:-56033155 None:intergenic
AAAGAAGGAGGTAGAGTTGT+TGG 0.403569 2_4:+56033102 Msa0336610:CDS
AATCCTAAATTGTATGCAAC+AGG 0.404453 2_4:+56032952 Msa0336610:CDS
ATGATGCCGCCTTTGTTGTA+TGG 0.409331 2_4:-56032763 None:intergenic
ATCTACAAGACCCCTTCAAC+AGG 0.423539 2_4:+56032601 Msa0336610:CDS
GATCGGCGCCAAAAGATGTT+TGG 0.432288 2_4:-56032492 None:intergenic
ATGTTTGGATAAGGAAAGCT+AGG 0.432456 2_4:-56032477 None:intergenic
AACCAAAACCAACAAGCATA+TGG 0.442223 2_4:+56032655 Msa0336610:CDS
GGGCGAGTCCATATGCTTGT+TGG 0.457418 2_4:-56032663 None:intergenic
CTTATTTAAATATTTGGATA+CGG 0.472563 2_4:+56032801 Msa0336610:CDS
CGCCAAAAGATGTTTGGATA+AGG 0.476701 2_4:-56032486 None:intergenic
ACAACAAAGGCGGCATCATA+TGG 0.486352 2_4:+56032767 Msa0336610:CDS
TTGGATTTCTTTGGTTGCCT+CGG 0.487334 2_4:-56032731 None:intergenic
TGAGACATCACCCCGACAAA+GGG 0.491087 2_4:-56032683 None:intergenic
CCACTACCAAAACCTGTTGA+AGG 0.504294 2_4:-56032613 None:intergenic
AATTGTTGTGATGGAAAAGA+AGG 0.508005 2_4:+56033087 Msa0336610:CDS
AGAAGGAGGTAGAGTTGTTG+GGG 0.508195 2_4:+56033104 Msa0336610:CDS
TCTTGCAATCAGCACTAGAA+AGG 0.515240 2_4:-56033032 None:intergenic
GAACTTCCAAATTGTTGTGA+TGG 0.518434 2_4:+56033078 Msa0336610:CDS
AAGGAAAGCTAGGGTAAATG+AGG 0.519346 2_4:-56032467 None:intergenic
GTCTTGTAATTAAACGTGGA+AGG 0.520587 2_4:-56032889 None:intergenic
GTGCCAACAGATTCTATATG+TGG 0.544696 2_4:+56032845 Msa0336610:CDS
CACTACCAAAACCTGTTGAA+GGG 0.556799 2_4:-56032612 None:intergenic
TGATGCCGCCTTTGTTGTAT+GGG 0.559095 2_4:-56032762 None:intergenic
TCTTGTAATTAAACGTGGAA+GGG 0.572047 2_4:-56032888 None:intergenic
GTGAGACATCACCCCGACAA+AGG 0.578094 2_4:-56032684 None:intergenic
ATTCCACATATAGAATCTGT+TGG 0.595083 2_4:-56032848 None:intergenic
TATGGACTCGCCCTTTGTCG+GGG 0.608556 2_4:+56032673 Msa0336610:CDS
ACTACCAAAACCTGTTGAAG+GGG 0.619106 2_4:-56032611 None:intergenic
CGCTGCCCATACAACAAAGG+CGG 0.624066 2_4:+56032757 Msa0336610:CDS
TGTTGTGATGGAAAAGAAGG+AGG 0.629309 2_4:+56033090 Msa0336610:CDS
AACAGGAGAGGTAAAGCTTG+AGG 0.633330 2_4:+56032969 Msa0336610:CDS
GAAGGAGGTAGAGTTGTTGG+GGG 0.635177 2_4:+56033105 Msa0336610:CDS
TTTAGTCTTGTAATTAAACG+TGG 0.638793 2_4:-56032893 None:intergenic
TAAATTGTATGCAACAGGAG+AGG 0.657769 2_4:+56032957 Msa0336610:CDS
GTGTAAAACTTGTGTCTCCG+AGG 0.663724 2_4:+56032714 Msa0336610:CDS
TGTTTGGATAAGGAAAGCTA+GGG 0.667388 2_4:-56032476 None:intergenic
AGTCGCTGCCCATACAACAA+AGG 0.682830 2_4:+56032754 Msa0336610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTGCTTATTTAAATATT+TGG + chr2_4:56032795-56032814 Msa0336610:CDS 10.0%
!! CTTATTTAAATATTTGGATA+CGG + chr2_4:56032801-56032820 Msa0336610:CDS 15.0%
!! TTAGAACAAAAATGAAAAAG+CGG - chr2_4:56032517-56032536 None:intergenic 20.0%
!!! TTTTCATTTTTGTTCTAACT+CGG + chr2_4:56032519-56032538 Msa0336610:CDS 20.0%
!!! TTTTCAAGTTTGATTCATAT+GGG - chr2_4:56032564-56032583 None:intergenic 20.0%
!!! TTTCATTTTTGTTCTAACTC+GGG + chr2_4:56032520-56032539 Msa0336610:CDS 25.0%
!!! GTTTTCAAGTTTGATTCATA+TGG - chr2_4:56032565-56032584 None:intergenic 25.0%
!!! TTTAGTCTTGTAATTAAACG+TGG - chr2_4:56032896-56032915 None:intergenic 25.0%
! AGGAATCAAAGAAACTTTAT+GGG + chr2_4:56032989-56033008 Msa0336610:CDS 25.0%
! TTCCTTATCCAAACATCTTT+TGG + chr2_4:56032484-56032503 Msa0336610:CDS 30.0%
ACAAAAATGAAAAAGCGGAT+CGG - chr2_4:56032512-56032531 None:intergenic 30.0%
TATTTGGATACGGATTTCTT+TGG + chr2_4:56032811-56032830 Msa0336610:CDS 30.0%
ATTCCACATATAGAATCTGT+TGG - chr2_4:56032851-56032870 None:intergenic 30.0%
TCTTGTAATTAAACGTGGAA+GGG - chr2_4:56032891-56032910 None:intergenic 30.0%
AATCCTAAATTGTATGCAAC+AGG + chr2_4:56032952-56032971 Msa0336610:CDS 30.0%
GAGGAATCAAAGAAACTTTA+TGG + chr2_4:56032988-56033007 Msa0336610:CDS 30.0%
! TCTTTTCCATCACAACAATT+TGG - chr2_4:56033087-56033106 None:intergenic 30.0%
! AATTGTTGTGATGGAAAAGA+AGG + chr2_4:56033087-56033106 Msa0336610:CDS 30.0%
TGTTTGGATAAGGAAAGCTA+GGG - chr2_4:56032479-56032498 None:intergenic 35.0%
ATGTTTGGATAAGGAAAGCT+AGG - chr2_4:56032480-56032499 None:intergenic 35.0%
!!! ATGCTTGTTGGTTTTGGTTT+TGG - chr2_4:56032654-56032673 None:intergenic 35.0%
AACCAAAACCAACAAGCATA+TGG + chr2_4:56032655-56032674 Msa0336610:CDS 35.0%
! ACACAAGTTTTACACTCTGA+GGG - chr2_4:56032709-56032728 None:intergenic 35.0%
GTCTTGTAATTAAACGTGGA+AGG - chr2_4:56032892-56032911 None:intergenic 35.0%
TCTCCTGTTGCATACAATTT+AGG - chr2_4:56032958-56032977 None:intergenic 35.0%
TAAATTGTATGCAACAGGAG+AGG + chr2_4:56032957-56032976 Msa0336610:CDS 35.0%
GAACTTCCAAATTGTTGTGA+TGG + chr2_4:56033078-56033097 Msa0336610:CDS 35.0%
AAGGAAAGCTAGGGTAAATG+AGG - chr2_4:56032470-56032489 None:intergenic 40.0%
CGCCAAAAGATGTTTGGATA+AGG - chr2_4:56032489-56032508 None:intergenic 40.0%
ACTACCAAAACCTGTTGAAG+GGG - chr2_4:56032614-56032633 None:intergenic 40.0%
CACTACCAAAACCTGTTGAA+GGG - chr2_4:56032615-56032634 None:intergenic 40.0%
!!! GTCCATATGCTTGTTGGTTT+TGG - chr2_4:56032660-56032679 None:intergenic 40.0%
! GACACAAGTTTTACACTCTG+AGG - chr2_4:56032710-56032729 None:intergenic 40.0%
TTGGATTTCTTTGGTTGCCT+CGG - chr2_4:56032734-56032753 None:intergenic 40.0%
GTGCCAACAGATTCTATATG+TGG + chr2_4:56032845-56032864 Msa0336610:CDS 40.0%
! TAGAAGCTTTTTGTGCAAGC+TGG - chr2_4:56032930-56032949 None:intergenic 40.0%
TCTTGCAATCAGCACTAGAA+AGG - chr2_4:56033035-56033054 None:intergenic 40.0%
! TGTTGTGATGGAAAAGAAGG+AGG + chr2_4:56033090-56033109 Msa0336610:CDS 40.0%
AAAGAAGGAGGTAGAGTTGT+TGG + chr2_4:56033102-56033121 Msa0336610:CDS 40.0%
AAGAAGGAGGTAGAGTTGTT+GGG + chr2_4:56033103-56033122 Msa0336610:CDS 40.0%
ATCTACAAGACCCCTTCAAC+AGG + chr2_4:56032601-56032620 Msa0336610:CDS 45.0%
! AAGACCCCTTCAACAGGTTT+TGG + chr2_4:56032607-56032626 Msa0336610:CDS 45.0%
CCACTACCAAAACCTGTTGA+AGG - chr2_4:56032616-56032635 None:intergenic 45.0%
!! CCTTCAACAGGTTTTGGTAG+TGG + chr2_4:56032613-56032632 Msa0336610:CDS 45.0%
GTGTAAAACTTGTGTCTCCG+AGG + chr2_4:56032714-56032733 Msa0336610:CDS 45.0%
GCAGCGACTTTGGATTTCTT+TGG - chr2_4:56032743-56032762 None:intergenic 45.0%
! TGATGCCGCCTTTGTTGTAT+GGG - chr2_4:56032765-56032784 None:intergenic 45.0%
! ATGATGCCGCCTTTGTTGTA+TGG - chr2_4:56032766-56032785 None:intergenic 45.0%
ACAACAAAGGCGGCATCATA+TGG + chr2_4:56032767-56032786 Msa0336610:CDS 45.0%
AACAGGAGAGGTAAAGCTTG+AGG + chr2_4:56032969-56032988 Msa0336610:CDS 45.0%
AGAAGGAGGTAGAGTTGTTG+GGG + chr2_4:56033104-56033123 Msa0336610:CDS 45.0%
GATCGGCGCCAAAAGATGTT+TGG - chr2_4:56032495-56032514 None:intergenic 50.0%
CATATGGACTCGCCCTTTGT+CGG + chr2_4:56032671-56032690 Msa0336610:CDS 50.0%
ATATGGACTCGCCCTTTGTC+GGG + chr2_4:56032672-56032691 Msa0336610:CDS 50.0%
TGAGACATCACCCCGACAAA+GGG - chr2_4:56032686-56032705 None:intergenic 50.0%
TGTTGTATGGGCAGCGACTT+TGG - chr2_4:56032753-56032772 None:intergenic 50.0%
AGTCGCTGCCCATACAACAA+AGG + chr2_4:56032754-56032773 Msa0336610:CDS 50.0%
GAAGGAGGTAGAGTTGTTGG+GGG + chr2_4:56033105-56033124 Msa0336610:CDS 50.0%
GGGCGAGTCCATATGCTTGT+TGG - chr2_4:56032666-56032685 None:intergenic 55.0%
TATGGACTCGCCCTTTGTCG+GGG + chr2_4:56032673-56032692 Msa0336610:CDS 55.0%
GTGAGACATCACCCCGACAA+AGG - chr2_4:56032687-56032706 None:intergenic 55.0%
CGCTGCCCATACAACAAAGG+CGG + chr2_4:56032757-56032776 Msa0336610:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 56032433 56033173 56032433 ID=Msa0336610;Name=Msa0336610
chr2_4 mRNA 56032433 56033173 56032433 ID=Msa0336610-mRNA-1;Parent=Msa0336610;Name=Msa0336610-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|246
chr2_4 exon 56032433 56033173 56032433 ID=Msa0336610-mRNA-1:exon:17075;Parent=Msa0336610-mRNA-1
chr2_4 CDS 56032433 56033173 56032433 ID=Msa0336610-mRNA-1:cds;Parent=Msa0336610-mRNA-1
Gene Sequence

>Msa0336610

ATGGCTTTCTCAAAACTCATGACAATTTTTCTCTCCTCATTTACCCTAGCTTTCCTTATCCAAACATCTTTTGGCGCCGATCCGCTTTTTCATTTTTGTTCTAACTCGGGTAACTTCACAGCACATAGCCCATATGAATCAAACTTGAAAACACTCATCGACTCACTTATCTACAAGACCCCTTCAACAGGTTTTGGTAGTGGATCATCGAGTCTGATCCAAAACCAAAACCAACAAGCATATGGACTCGCCCTTTGTCGGGGTGATGTCTCACCCTCAGAGTGTAAAACTTGTGTCTCCGAGGCAACCAAAGAAATCCAAAGTCGCTGCCCATACAACAAAGGCGGCATCATATGGTACGATTATTGCTTATTTAAATATTTGGATACGGATTTCTTTGGCAAGATTGACAGTGCCAACAGATTCTATATGTGGAATTTGAATAACGTGAGTGACCCTTCCACGTTTAATTACAAGACTAAAGATTTATTGAGCCAGCTTGCACAAAAAGCTTCTATGAATCCTAAATTGTATGCAACAGGAGAGGTAAAGCTTGAGGAATCAAAGAAACTTTATGGGCTAACTCAGTGCACTAGAGACCTTTCTAGTGCTGATTGCAAGAATTGTCTTGATGCTGCAATTAATGAACTTCCAAATTGTTGTGATGGAAAAGAAGGAGGTAGAGTTGTTGGGGGAAGCTGTAACTTTCGATATGAGATATACCCATTTGTCAAAGAGTAG
Protein sequence

>Msa0336610

MAFSKLMTIFLSSFTLAFLIQTSFGADPLFHFCSNSGNFTAHSPYESNLKTLIDSLIYKTPSTGFGSGSSSLIQNQNQQAYGLALCRGDVSPSECKTCVSEATKEIQSRCPYNKGGIIWYDYCLFKYLDTDFFGKIDSANRFYMWNLNNVSDPSTFNYKTKDLLSQLAQKASMNPKLYATGEVKLEESKKLYGLTQCTRDLSSADCKNCLDAAINELPNCCDGKEGGRVVGGSCNFRYEIYPFVKE*