AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0221020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221020 MtrunA17_Chr2g0325131 95.455 352 8 2 1 352 1 344 0.0 679
Msa0221020 MtrunA17_Chr4g0040891 62.536 347 93 13 1 330 1 327 1.38e-124 361
Msa0221020 MtrunA17_Chr2g0316551 53.560 323 117 10 1 302 1 311 3.72e-95 286
Msa0221020 MtrunA17_Chr8g0380611 35.094 265 145 8 44 294 73 324 6.20e-28 112
Msa0221020 MtrunA17_Chr5g0432701 48.936 94 48 0 198 291 158 251 2.68e-20 90.9
Msa0221020 MtrunA17_Chr4g0036071 48.454 97 50 0 197 293 358 454 5.12e-20 90.9
Msa0221020 MtrunA17_Chr2g0329551 44.737 114 58 2 197 310 219 327 3.30e-19 88.2
Msa0221020 MtrunA17_Chr3g0107491 46.237 93 50 0 199 291 177 269 1.78e-18 85.5
Msa0221020 MtrunA17_Chr6g0463571 46.000 100 54 0 197 296 149 248 6.67e-18 83.2
Msa0221020 MtrunA17_Chr3g0128781 45.745 94 51 0 198 291 107 200 3.72e-17 81.3
Msa0221020 MtrunA17_Chr1g0156051 48.980 98 46 2 198 293 386 481 1.46e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221020 AT3G58120.1 59.130 345 109 10 1 330 1 328 3.36e-120 350
Msa0221020 AT2G42380.2 57.101 345 107 8 1 330 1 319 5.26e-114 334
Msa0221020 AT2G42380.1 53.623 345 108 9 1 330 1 308 2.81e-102 304
Msa0221020 AT3G58120.2 58.020 293 96 8 1 278 1 281 4.78e-100 297
Msa0221020 AT2G42380.5 56.701 291 87 7 1 278 1 265 1.00e-92 278
Msa0221020 AT2G42380.3 49.206 252 89 7 1 239 1 226 1.57e-61 197
Msa0221020 AT2G42380.4 49.206 252 89 7 1 239 1 226 1.57e-61 197
Msa0221020 AT1G58110.1 30.448 335 161 11 2 294 20 324 9.07e-27 109
Msa0221020 AT1G58110.2 30.448 335 161 11 2 294 20 324 9.07e-27 109
Msa0221020 AT1G43700.1 46.491 114 56 1 185 293 175 288 7.48e-21 92.4
Msa0221020 AT4G38900.2 48.421 95 49 0 197 291 392 486 6.56e-20 91.3
Msa0221020 AT4G38900.3 48.421 95 49 0 197 291 392 486 6.56e-20 91.3
Msa0221020 AT5G04840.1 29.605 304 162 8 2 296 5 265 7.29e-20 89.0
Msa0221020 AT2G40620.1 46.316 95 51 0 197 291 146 240 5.14e-19 87.4
Msa0221020 AT1G06850.1 48.387 93 48 0 199 291 148 240 1.61e-18 85.9
Msa0221020 AT1G06070.1 46.316 95 51 0 197 291 208 302 1.68e-18 86.7
Msa0221020 AT2G21230.4 36.486 148 89 2 197 340 368 514 3.14e-18 86.3
Msa0221020 AT2G21230.1 36.486 148 89 2 197 340 368 514 3.14e-18 86.3
Msa0221020 AT2G31370.5 31.174 247 143 5 62 291 57 293 5.56e-18 84.7
Msa0221020 AT2G31370.2 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT2G31370.4 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT2G31370.1 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT2G31370.7 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT2G31370.3 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT2G31370.6 31.174 247 143 5 62 291 57 293 5.58e-18 84.7
Msa0221020 AT4G38900.1 45.545 101 49 1 197 291 392 492 1.17e-17 84.7
Msa0221020 AT5G04840.2 29.720 286 149 8 2 278 5 247 1.14e-16 79.0
Msa0221020 AT1G35490.2 28.226 248 133 7 46 291 54 258 1.51e-16 79.7
Msa0221020 AT1G35490.1 28.226 248 133 7 46 291 54 258 1.51e-16 79.7
Msa0221020 AT2G21230.3 34.416 154 90 3 197 340 368 520 7.13e-16 79.0
Msa0221020 AT2G21230.2 46.341 82 44 0 197 278 368 449 4.22e-14 73.6
Msa0221020 AT5G07160.1 41.237 97 57 0 195 291 44 140 3.16e-12 64.3
Msa0221020 AT1G06850.2 68.889 45 14 0 198 242 147 191 5.72e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCCCTTGTGTGGTTTC+TGG 0.097414 2_1:+69531682 Msa0221020:five_prime_UTR
GAAATATACATATTTATTAA+AGG 0.205907 2_1:+69531704 Msa0221020:five_prime_UTR
GGTGACATGTTTGGGATCTT+AGG 0.259620 2_1:-69531940 None:intergenic
GTTTGTAGTGACAATGTTAT+TGG 0.263094 2_1:-69532019 None:intergenic
TTTGAGGTCTTGGATTTAAT+TGG 0.274873 2_1:+69535520 Msa0221020:three_prime_UTR
GCATTAGAATCTTGGCAAAT+AGG 0.275046 2_1:+69532935 Msa0221020:intron
CCTCAAATTTGTTGTTGTTA+AGG 0.275676 2_1:-69531855 None:intergenic
GAGAAGAAGGAAAATGATTT+AGG 0.296863 2_1:+69532363 Msa0221020:CDS
GCCAACTTGGTGACATGTTT+GGG 0.333815 2_1:-69531948 None:intergenic
TTATTAAAGGGTTGTGTTAG+AGG 0.345247 2_1:+69531717 Msa0221020:five_prime_UTR
CATTGGCTTTCTACCTCATC+AGG 0.351950 2_1:-69532429 None:intergenic
AAATATACATATTTATTAAA+GGG 0.356758 2_1:+69531705 Msa0221020:five_prime_UTR
AAATTGCGCTGTATATATAA+TGG 0.357460 2_1:+69535628 Msa0221020:three_prime_UTR
GGTCTTGGATTTAATTGGTT+TGG 0.375520 2_1:+69535525 Msa0221020:three_prime_UTR
GCGTAGTGTAACTTCATTGC+AGG 0.377738 2_1:+69533011 Msa0221020:CDS
GGCCAACTTGGTGACATGTT+TGG 0.381627 2_1:-69531949 None:intergenic
ACCAATGCTTGATGATTGTC+GGG 0.385706 2_1:+69532152 Msa0221020:CDS
GACAATGTTATTGGTTGAAA+TGG 0.385822 2_1:-69532010 None:intergenic
TCTGTTTGAGAATCACATAT+TGG 0.388915 2_1:-69534497 None:intergenic
CCATCTTCTTGAGGTTCTGA+TGG 0.391631 2_1:-69534433 None:intergenic
GAAGAATAAACAAGAGAAGA+AGG 0.396694 2_1:+69532350 Msa0221020:CDS
AAGAAGATGGAAAATGCTAA+TGG 0.406779 2_1:+69534446 Msa0221020:CDS
CCTTAACAACAACAAATTTG+AGG 0.410672 2_1:+69531855 Msa0221020:five_prime_UTR
ATCAGAATCAGAACCCTTCA+TGG 0.433073 2_1:+69532046 Msa0221020:CDS
ACCACACAAGGGAATGTTAG+AGG 0.439664 2_1:-69531676 None:intergenic
GGAGATAGAAAGATTAAGAC+AGG 0.441141 2_1:+69534403 Msa0221020:CDS
GCATTGTTGTTGTTACTTTG+AGG 0.444336 2_1:-69532471 None:intergenic
TACAAAACTATATAACAAAC+AGG 0.456508 2_1:-69531890 None:intergenic
CCCTCTAACATTCCCTTGTG+TGG 0.457112 2_1:+69531675 Msa0221020:five_prime_UTR
CAAGGCGAGGCGCTCATAGA+AGG 0.460166 2_1:+69532097 Msa0221020:CDS
AACCAATGCTTGATGATTGT+CGG 0.461826 2_1:+69532151 Msa0221020:CDS
ATTAACATACAATGTATGAA+TGG 0.472844 2_1:-69531766 None:intergenic
AATGTGGAGTGTGATGGATA+TGG 0.473304 2_1:+69535471 Msa0221020:three_prime_UTR
CATCAGTGGCATCAAAAGAA+AGG 0.482392 2_1:+69535247 Msa0221020:CDS
TTCTGATCTGAAGGACTCGA+AGG 0.485897 2_1:-69532300 None:intergenic
GGTAGAAAGCCAATGCAAAC+AGG 0.488493 2_1:+69532437 Msa0221020:CDS
CCATCAGAACCTCAAGAAGA+TGG 0.490491 2_1:+69534433 Msa0221020:CDS
CCCCGACAATCATCAAGCAT+TGG 0.494005 2_1:-69532153 None:intergenic
TTAACATACAATGTATGAAT+GGG 0.503238 2_1:-69531765 None:intergenic
ATGTTCAGTGATGAAATATC+TGG 0.505923 2_1:+69532240 Msa0221020:CDS
TGAAAAGCTTGTCTTGTGCA+AGG 0.507196 2_1:-69533295 None:intergenic
TTATTGGTTGAAATGGATGT+TGG 0.515770 2_1:-69532003 None:intergenic
TTGACAAAATTCTGATCTGA+AGG 0.516864 2_1:-69532309 None:intergenic
TTTAGGAGAGATGAAGAAAG+AGG 0.538946 2_1:+69532380 Msa0221020:CDS
AGGAACTCATCCACCCATGA+AGG 0.539506 2_1:-69532060 None:intergenic
GAAAAGCTTGTCTTGTGCAA+GGG 0.539760 2_1:-69533294 None:intergenic
ATATGGATAAAATGAAAGAA+AGG 0.562865 2_1:+69535488 Msa0221020:three_prime_UTR
TCATCAAGAGGCACTGAAGA+GGG 0.563124 2_1:+69534382 Msa0221020:CDS
AGATATTTCATCACTGAACA+TGG 0.569631 2_1:-69532238 None:intergenic
CTGATCCAAAGAGAGTCAAA+AGG 0.572655 2_1:+69532517 Msa0221020:CDS
ATCAGTGGCATCAAAAGAAA+GGG 0.574757 2_1:+69535248 Msa0221020:CDS
TTCGATGAAGACAACGTTGG+TGG 0.575587 2_1:-69532276 None:intergenic
TCCCAAACATGTCACCAAGT+TGG 0.580152 2_1:+69531947 Msa0221020:CDS
GGGAAACACATGTGCATCAG+TGG 0.585339 2_1:+69535233 Msa0221020:intron
AAAACAAAGACAATGGCTTG+TGG 0.588542 2_1:+69535448 Msa0221020:intron
GACATGTTTGGGATCTTAGG+AGG 0.588767 2_1:-69531937 None:intergenic
CTCATCAAGAGGCACTGAAG+AGG 0.590175 2_1:+69534381 Msa0221020:CDS
TTGTGGAATGTGGAGTGTGA+TGG 0.590221 2_1:+69535465 Msa0221020:three_prime_UTR
CCACACAAGGGAATGTTAGA+GGG 0.594577 2_1:-69531675 None:intergenic
TTTACATGCAGCTCATCAAG+AGG 0.601727 2_1:+69534370 Msa0221020:intron
GAATCAGAACCCTTCATGGG+TGG 0.607660 2_1:+69532050 Msa0221020:CDS
ATTGAAATATGAACCTGATG+AGG 0.608223 2_1:+69532416 Msa0221020:CDS
TCAGAATCAGAACCCTTCAT+GGG 0.609308 2_1:+69532047 Msa0221020:CDS
TCTGATCTGAAGGACTCGAA+GGG 0.610267 2_1:-69532299 None:intergenic
AGACAATGGCTTGTGGAATG+TGG 0.619824 2_1:+69535455 Msa0221020:intron
GGAACTCATCCACCCATGAA+GGG 0.626852 2_1:-69532059 None:intergenic
AGTGGCATCAAAAGAAAGGG+TGG 0.627047 2_1:+69535251 Msa0221020:CDS
CAAATAGGCAATCAGCACAA+AGG 0.647617 2_1:+69532950 Msa0221020:CDS
ATGAGCGCCTCGCCTTGCCG+AGG 0.647953 2_1:-69532091 None:intergenic
CAGCACAAAGGTCACGTGTG+AGG 0.661809 2_1:+69532962 Msa0221020:CDS
GCGAGGCGCTCATAGAAGGT+CGG 0.662721 2_1:+69532101 Msa0221020:CDS
GCCTTGCCGAGGAAAAGTCG+AGG 0.688307 2_1:-69532080 None:intergenic
GATTGTCGGGGTAAACACGA+TGG 0.708511 2_1:+69532165 Msa0221020:CDS
GGGTTCGATGAAGACAACGT+TGG 0.721008 2_1:-69532279 None:intergenic
ATATTTCCAGAAACCACACA+AGG 0.726763 2_1:-69531688 None:intergenic
CCAATGCTTGATGATTGTCG+GGG 0.731647 2_1:+69532153 Msa0221020:CDS
TATTTCCAGAAACCACACAA+GGG 0.750776 2_1:-69531687 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAAAAAAAAATGTTAAA+GGG - chr2_1:69531520-69531539 None:intergenic 10.0%
!!! TTTTGTTTTTTTAATTAACT+TGG + chr2_1:69531645-69531664 Msa0221020:five_prime_UTR 10.0%
!! GAAATATACATATTTATTAA+AGG + chr2_1:69531704-69531723 Msa0221020:five_prime_UTR 10.0%
!!! GTTTTATTAATAATAATTAC+TGG + chr2_1:69534236-69534255 Msa0221020:intron 10.0%
!! CCTATAAAAAAAAATGTTAA+AGG - chr2_1:69531521-69531540 None:intergenic 15.0%
!!! CCTTTAACATTTTTTTTTAT+AGG + chr2_1:69531518-69531537 Msa0221020:five_prime_UTR 15.0%
!! AGATAAAAATTAAAACATGT+AGG + chr2_1:69532567-69532586 Msa0221020:intron 15.0%
!! ATGAAATGACAAAATAAAAA+TGG + chr2_1:69533447-69533466 Msa0221020:intron 15.0%
!! AGAATTAATATCAATATTGA+AGG + chr2_1:69533900-69533919 Msa0221020:intron 15.0%
!! ATATTTGAAAAATACTTAGT+TGG - chr2_1:69534101-69534120 None:intergenic 15.0%
!! TTTAAATCTGATAAGTAAAA+AGG - chr2_1:69534158-69534177 None:intergenic 15.0%
!! AATTAATGAAAAACAATGAT+TGG - chr2_1:69534262-69534281 None:intergenic 15.0%
!! CTAAATAGTATTAACTATTA+AGG - chr2_1:69534294-69534313 None:intergenic 15.0%
!!! ATTGCAGAATTTTTTTTATA+AGG + chr2_1:69534645-69534664 Msa0221020:intron 15.0%
!! TCTATATAGAAAAAATTGAA+TGG + chr2_1:69535323-69535342 Msa0221020:intron 15.0%
!! TTAACATACAATGTATGAAT+GGG - chr2_1:69531768-69531787 None:intergenic 20.0%
!! ATTAACATACAATGTATGAA+TGG - chr2_1:69531769-69531788 None:intergenic 20.0%
!! TACAAAACTATATAACAAAC+AGG - chr2_1:69531893-69531912 None:intergenic 20.0%
!!! CATAATATTTTTTTGGTGTT+TGG - chr2_1:69531983-69532002 None:intergenic 20.0%
!!! ATGTTGGCATAATATTTTTT+TGG - chr2_1:69531990-69532009 None:intergenic 20.0%
!! AATTGAAATATTGTTGATCT+TGG + chr2_1:69532819-69532838 Msa0221020:intron 20.0%
!! AAATTTAATAAGAGTGAAAC+AGG + chr2_1:69533544-69533563 Msa0221020:intron 20.0%
!! TATATTAACTACTTTGTGAT+GGG - chr2_1:69533660-69533679 None:intergenic 20.0%
!!! TCTTGAAATTTTGATACATA+GGG - chr2_1:69533762-69533781 None:intergenic 20.0%
!! AAGTATTTGTACATTCTATT+TGG - chr2_1:69534074-69534093 None:intergenic 20.0%
!!! GTAAAATATCCATTTTGAAA+AGG + chr2_1:69535049-69535068 Msa0221020:intron 20.0%
!!! ATTTAGTTTCCTTTTCAAAA+TGG - chr2_1:69535061-69535080 None:intergenic 20.0%
!! ATATAGAAAAAATTGAATGG+AGG + chr2_1:69535326-69535345 Msa0221020:intron 20.0%
!!! TTTATCTTTTTCAATCCATT+TGG + chr2_1:69535424-69535443 Msa0221020:intron 20.0%
!! ATATGGATAAAATGAAAGAA+AGG + chr2_1:69535488-69535507 Msa0221020:three_prime_UTR 20.0%
!!! GTTTTTTTGCATTAGAATCT+TGG + chr2_1:69532927-69532946 Msa0221020:intron 25.0%
! ATTTGCAGTACTATAATATC+TGG + chr2_1:69533081-69533100 Msa0221020:intron 25.0%
! ATATATATTTGGACAGTAGA+AGG - chr2_1:69533172-69533191 None:intergenic 25.0%
! ACTGTCCAAATATATATTGA+AGG + chr2_1:69533175-69533194 Msa0221020:intron 25.0%
! TTCAGCCTTCAATATATATT+TGG - chr2_1:69533183-69533202 None:intergenic 25.0%
! ATATTAACTACTTTGTGATG+GGG - chr2_1:69533659-69533678 None:intergenic 25.0%
! GTATATTAACTACTTTGTGA+TGG - chr2_1:69533661-69533680 None:intergenic 25.0%
!!! CTTGAAATTTTGATACATAG+GGG - chr2_1:69533761-69533780 None:intergenic 25.0%
!!! CTCTTGAAATTTTGATACAT+AGG - chr2_1:69533763-69533782 None:intergenic 25.0%
! GTTAGTCAAAATAGTTTCTT+AGG + chr2_1:69533801-69533820 Msa0221020:intron 25.0%
!! AAGGAAAATGAGAGATTTTA+AGG + chr2_1:69534664-69534683 Msa0221020:intron 25.0%
!!! AAATGAGAGATTTTAAGGAA+AGG + chr2_1:69534669-69534688 Msa0221020:intron 25.0%
!!! AATGAGAGATTTTAAGGAAA+GGG + chr2_1:69534670-69534689 Msa0221020:intron 25.0%
! AAAATAGCGAACTTAAAACT+TGG + chr2_1:69534799-69534818 Msa0221020:intron 25.0%
!!! TGTGTTTTGCTTTAAAAGAA+AGG + chr2_1:69535179-69535198 Msa0221020:intron 25.0%
!!! GTGTTTTGCTTTAAAAGAAA+GGG + chr2_1:69535180-69535199 Msa0221020:intron 25.0%
!!! ATTGTCTTTGTTTTTCCAAA+TGG - chr2_1:69535442-69535461 None:intergenic 25.0%
! ATTTGGAAAAACAAAGACAA+TGG + chr2_1:69535441-69535460 Msa0221020:intron 25.0%
! AAATTGCGCTGTATATATAA+TGG + chr2_1:69535628-69535647 Msa0221020:three_prime_UTR 25.0%
TTATTAAAGGGTTGTGTTAG+AGG + chr2_1:69531717-69531736 Msa0221020:five_prime_UTR 30.0%
!! CCTCAAATTTGTTGTTGTTA+AGG - chr2_1:69531858-69531877 None:intergenic 30.0%
CCTTAACAACAACAAATTTG+AGG + chr2_1:69531855-69531874 Msa0221020:five_prime_UTR 30.0%
! TTTTGTACATCTCTCTCAAA+TGG + chr2_1:69531906-69531925 Msa0221020:exon 30.0%
!!! TTTTGGTGTTTGGAAAAATC+TGG - chr2_1:69531973-69531992 None:intergenic 30.0%
! TTATTGGTTGAAATGGATGT+TGG - chr2_1:69532006-69532025 None:intergenic 30.0%
! GACAATGTTATTGGTTGAAA+TGG - chr2_1:69532013-69532032 None:intergenic 30.0%
GTTTGTAGTGACAATGTTAT+TGG - chr2_1:69532022-69532041 None:intergenic 30.0%
AGATATTTCATCACTGAACA+TGG - chr2_1:69532241-69532260 None:intergenic 30.0%
ATGTTCAGTGATGAAATATC+TGG + chr2_1:69532240-69532259 Msa0221020:CDS 30.0%
TTGACAAAATTCTGATCTGA+AGG - chr2_1:69532312-69532331 None:intergenic 30.0%
GAAGAATAAACAAGAGAAGA+AGG + chr2_1:69532350-69532369 Msa0221020:CDS 30.0%
GAGAAGAAGGAAAATGATTT+AGG + chr2_1:69532363-69532382 Msa0221020:CDS 30.0%
ATTGAAATATGAACCTGATG+AGG + chr2_1:69532416-69532435 Msa0221020:CDS 30.0%
!! AATTACCTTTTGACTCTCTT+TGG - chr2_1:69532525-69532544 None:intergenic 30.0%
AAAATTGTGTCATGTCATGT+GGG - chr2_1:69532708-69532727 None:intergenic 30.0%
AAAAATTGTGTCATGTCATG+TGG - chr2_1:69532709-69532728 None:intergenic 30.0%
CAGTGCTATATATAGCTTAT+TGG - chr2_1:69533483-69533502 None:intergenic 30.0%
TATTAACTACTTTGTGATGG+GGG - chr2_1:69533658-69533677 None:intergenic 30.0%
ATTATTGTGCTTACTCGTTA+GGG + chr2_1:69533923-69533942 Msa0221020:intron 30.0%
TACTATTTAGACACATAGCT+AGG + chr2_1:69534304-69534323 Msa0221020:intron 30.0%
ACTATTTAGACACATAGCTA+GGG + chr2_1:69534305-69534324 Msa0221020:intron 30.0%
AAGAAGATGGAAAATGCTAA+TGG + chr2_1:69534446-69534465 Msa0221020:CDS 30.0%
TCTGTTTGAGAATCACATAT+TGG - chr2_1:69534500-69534519 None:intergenic 30.0%
AAGGAAAGGGAAAATAAATG+AGG + chr2_1:69534683-69534702 Msa0221020:intron 30.0%
AGGAAAGGGAAAATAAATGA+GGG + chr2_1:69534684-69534703 Msa0221020:intron 30.0%
ATTGTTTAATCTTACTCGCA+CGG + chr2_1:69534822-69534841 Msa0221020:intron 30.0%
TAGATATGACTGACAACATA+TGG + chr2_1:69534847-69534866 Msa0221020:intron 30.0%
ATAATCGACTGTAAATTCAG+CGG - chr2_1:69534976-69534995 None:intergenic 30.0%
!!! ACTTGTTTTTATGCCACATT+TGG - chr2_1:69535029-69535048 None:intergenic 30.0%
TACTACTACTAGTACAAGTA+GGG + chr2_1:69535123-69535142 Msa0221020:intron 30.0%
! TTTGAGGTCTTGGATTTAAT+TGG + chr2_1:69535520-69535539 Msa0221020:three_prime_UTR 30.0%
TATTTCCAGAAACCACACAA+GGG - chr2_1:69531690-69531709 None:intergenic 35.0%
ATATTTCCAGAAACCACACA+AGG - chr2_1:69531691-69531710 None:intergenic 35.0%
! AACCAATGCTTGATGATTGT+CGG + chr2_1:69532151-69532170 Msa0221020:CDS 35.0%
TTTAGGAGAGATGAAGAAAG+AGG + chr2_1:69532380-69532399 Msa0221020:CDS 35.0%
! GTGAATTTTCCTGTTTGCAT+TGG - chr2_1:69532449-69532468 None:intergenic 35.0%
!! GCATTGTTGTTGTTACTTTG+AGG - chr2_1:69532474-69532493 None:intergenic 35.0%
GAATCAGTTGCAAAACTCAA+AGG - chr2_1:69532905-69532924 None:intergenic 35.0%
!! TTGAGTTTTGCAACTGATTC+TGG + chr2_1:69532905-69532924 Msa0221020:intron 35.0%
GCATTAGAATCTTGGCAAAT+AGG + chr2_1:69532935-69532954 Msa0221020:intron 35.0%
! ATCTCCAAGAGTTGCATTTT+TGG + chr2_1:69533214-69533233 Msa0221020:CDS 35.0%
TGATCCAAAAATGCAACTCT+TGG - chr2_1:69533221-69533240 None:intergenic 35.0%
! CAAGACAAGCTTTTCAAAGA+TGG + chr2_1:69533302-69533321 Msa0221020:CDS 35.0%
!! ATTTCATGCTTGACTTGTCA+TGG - chr2_1:69533434-69533453 None:intergenic 35.0%
AGTCTACTATCATTTGAGCT+CGG + chr2_1:69533687-69533706 Msa0221020:intron 35.0%
GATTATTGTGCTTACTCGTT+AGG + chr2_1:69533922-69533941 Msa0221020:intron 35.0%
TATGTTTGTGTGCGTTCAAA+TGG - chr2_1:69533966-69533985 None:intergenic 35.0%
AAAAGGAGCTAACTACTTTG+AGG - chr2_1:69534141-69534160 None:intergenic 35.0%
GGAGATAGAAAGATTAAGAC+AGG + chr2_1:69534403-69534422 Msa0221020:CDS 35.0%
! TAGCATTTTCCATCTTCTTG+AGG - chr2_1:69534445-69534464 None:intergenic 35.0%
!!! ACATATTGGCTTTTGTGATG+GGG - chr2_1:69534486-69534505 None:intergenic 35.0%
!!! CACATATTGGCTTTTGTGAT+GGG - chr2_1:69534487-69534506 None:intergenic 35.0%
!!! TCACATATTGGCTTTTGTGA+TGG - chr2_1:69534488-69534507 None:intergenic 35.0%
CACACGGTTACAATTACATA+AGG - chr2_1:69534735-69534754 None:intergenic 35.0%
AATAGAACATGAGTTGCATG+CGG - chr2_1:69534887-69534906 None:intergenic 35.0%
AGACCGTTCGATTAATCTAA+CGG + chr2_1:69534996-69535015 Msa0221020:intron 35.0%
AGACCGTTAGATTAATCGAA+CGG - chr2_1:69535002-69535021 None:intergenic 35.0%
TTTGAAGAGTCACACGTTAT+TGG + chr2_1:69535085-69535104 Msa0221020:intron 35.0%
TTGAAGAGTCACACGTTATT+GGG + chr2_1:69535086-69535105 Msa0221020:intron 35.0%
GTACTACTACTAGTACAAGT+AGG + chr2_1:69535122-69535141 Msa0221020:intron 35.0%
ATCAGTGGCATCAAAAGAAA+GGG + chr2_1:69535248-69535267 Msa0221020:CDS 35.0%
AAAACAAAGACAATGGCTTG+TGG + chr2_1:69535448-69535467 Msa0221020:intron 35.0%
GGTCTTGGATTTAATTGGTT+TGG + chr2_1:69535525-69535544 Msa0221020:three_prime_UTR 35.0%
TTGGAAAAATCTGGCCAACT+TGG - chr2_1:69531964-69531983 None:intergenic 40.0%
ATCAGAATCAGAACCCTTCA+TGG + chr2_1:69532046-69532065 Msa0221020:CDS 40.0%
TCAGAATCAGAACCCTTCAT+GGG + chr2_1:69532047-69532066 Msa0221020:CDS 40.0%
! ACCAATGCTTGATGATTGTC+GGG + chr2_1:69532152-69532171 Msa0221020:CDS 40.0%
CTGATCCAAAGAGAGTCAAA+AGG + chr2_1:69532517-69532536 Msa0221020:CDS 40.0%
CAAATAGGCAATCAGCACAA+AGG + chr2_1:69532950-69532969 Msa0221020:CDS 40.0%
GAAAAGCTTGTCTTGTGCAA+GGG - chr2_1:69533297-69533316 None:intergenic 40.0%
TGAAAAGCTTGTCTTGTGCA+AGG - chr2_1:69533298-69533317 None:intergenic 40.0%
GTGAAAGAATATGTACCCTG+TGG + chr2_1:69533397-69533416 Msa0221020:intron 40.0%
! TGACTTGTCATGGTCTCATT+AGG - chr2_1:69533424-69533443 None:intergenic 40.0%
GCACTGTAGTTACTTGAAGT+TGG + chr2_1:69533497-69533516 Msa0221020:intron 40.0%
GTTGGTCAAGTATTCACTAG+TGG + chr2_1:69533515-69533534 Msa0221020:intron 40.0%
TGTGTGCAGTCTCATAACTA+TGG - chr2_1:69533571-69533590 None:intergenic 40.0%
GGGCACATGATCACATAAAT+AGG - chr2_1:69533638-69533657 None:intergenic 40.0%
GTCTACTATCATTTGAGCTC+GGG + chr2_1:69533688-69533707 Msa0221020:intron 40.0%
TTTACATGCAGCTCATCAAG+AGG + chr2_1:69534370-69534389 Msa0221020:intron 40.0%
!! TTTTGTGATGGGGATGGTAA+GGG - chr2_1:69534476-69534495 None:intergenic 40.0%
GACTGACAACATATGGTTAG+AGG + chr2_1:69534854-69534873 Msa0221020:intron 40.0%
TAACGGTCTACAACCAAATG+TGG + chr2_1:69535013-69535032 Msa0221020:intron 40.0%
CCAATCATGCAAACTTTGAG+TGG - chr2_1:69535207-69535226 None:intergenic 40.0%
CCACTCAAAGTTTGCATGAT+TGG + chr2_1:69535204-69535223 Msa0221020:intron 40.0%
AGTTTGCATGATTGGAATGC+AGG + chr2_1:69535212-69535231 Msa0221020:intron 40.0%
GTTTGCATGATTGGAATGCA+GGG + chr2_1:69535213-69535232 Msa0221020:intron 40.0%
CATCAGTGGCATCAAAAGAA+AGG + chr2_1:69535247-69535266 Msa0221020:CDS 40.0%
!! AATGTGGAGTGTGATGGATA+TGG + chr2_1:69535471-69535490 Msa0221020:three_prime_UTR 40.0%
!! AGAAAGGTGTGTCAGTTTTG+AGG + chr2_1:69535504-69535523 Msa0221020:three_prime_UTR 40.0%
CCACACAAGGGAATGTTAGA+GGG - chr2_1:69531678-69531697 None:intergenic 45.0%
ACCACACAAGGGAATGTTAG+AGG - chr2_1:69531679-69531698 None:intergenic 45.0%
ACATTCCCTTGTGTGGTTTC+TGG + chr2_1:69531682-69531701 Msa0221020:five_prime_UTR 45.0%
! GACATGTTTGGGATCTTAGG+AGG - chr2_1:69531940-69531959 None:intergenic 45.0%
! GGTGACATGTTTGGGATCTT+AGG - chr2_1:69531943-69531962 None:intergenic 45.0%
TCCCAAACATGTCACCAAGT+TGG + chr2_1:69531947-69531966 Msa0221020:CDS 45.0%
! GCCAACTTGGTGACATGTTT+GGG - chr2_1:69531951-69531970 None:intergenic 45.0%
! TGAGTTCCTCGACTTTTCCT+CGG + chr2_1:69532074-69532093 Msa0221020:CDS 45.0%
! CCAATGCTTGATGATTGTCG+GGG + chr2_1:69532153-69532172 Msa0221020:CDS 45.0%
TTCGATGAAGACAACGTTGG+TGG - chr2_1:69532279-69532298 None:intergenic 45.0%
TCTGATCTGAAGGACTCGAA+GGG - chr2_1:69532302-69532321 None:intergenic 45.0%
TTCTGATCTGAAGGACTCGA+AGG - chr2_1:69532303-69532322 None:intergenic 45.0%
!! CATTGGCTTTCTACCTCATC+AGG - chr2_1:69532432-69532451 None:intergenic 45.0%
GGTAGAAAGCCAATGCAAAC+AGG + chr2_1:69532437-69532456 Msa0221020:CDS 45.0%
GCGTAGTGTAACTTCATTGC+AGG + chr2_1:69533011-69533030 Msa0221020:CDS 45.0%
ATGGTCTCATTAGGACCACA+GGG - chr2_1:69533415-69533434 None:intergenic 45.0%
!! TCATCAAGAGGCACTGAAGA+GGG + chr2_1:69534382-69534401 Msa0221020:CDS 45.0%
! CCATCTTCTTGAGGTTCTGA+TGG - chr2_1:69534436-69534455 None:intergenic 45.0%
CCATCAGAACCTCAAGAAGA+TGG + chr2_1:69534433-69534452 Msa0221020:CDS 45.0%
!! CTTTTGTGATGGGGATGGTA+AGG - chr2_1:69534477-69534496 None:intergenic 45.0%
!!! ATTGGCTTTTGTGATGGGGA+TGG - chr2_1:69534482-69534501 None:intergenic 45.0%
TAACCGTGTGCATAGTCAGT+CGG + chr2_1:69534745-69534764 Msa0221020:intron 45.0%
AAGAGTCACACGTTATTGGG+TGG + chr2_1:69535089-69535108 Msa0221020:intron 45.0%
AGTGGCATCAAAAGAAAGGG+TGG + chr2_1:69535251-69535270 Msa0221020:CDS 45.0%
! AGACAATGGCTTGTGGAATG+TGG + chr2_1:69535455-69535474 Msa0221020:intron 45.0%
TTGTGGAATGTGGAGTGTGA+TGG + chr2_1:69535465-69535484 Msa0221020:three_prime_UTR 45.0%
!!! GTGTGTCAGTTTTGAGGTCT+TGG + chr2_1:69535510-69535529 Msa0221020:three_prime_UTR 45.0%
!!! ATTTTACTAAATTTTATTTA+GGG - chr2_1:69531555-69531574 None:intergenic 5.0%
!!! AATTTTACTAAATTTTATTT+AGG - chr2_1:69531556-69531575 None:intergenic 5.0%
!! AAATATACATATTTATTAAA+GGG + chr2_1:69531705-69531724 Msa0221020:five_prime_UTR 5.0%
CCCTCTAACATTCCCTTGTG+TGG + chr2_1:69531675-69531694 Msa0221020:five_prime_UTR 50.0%
! GGCCAACTTGGTGACATGTT+TGG - chr2_1:69531952-69531971 None:intergenic 50.0%
GAATCAGAACCCTTCATGGG+TGG + chr2_1:69532050-69532069 Msa0221020:CDS 50.0%
GGAACTCATCCACCCATGAA+GGG - chr2_1:69532062-69532081 None:intergenic 50.0%
AGGAACTCATCCACCCATGA+AGG - chr2_1:69532063-69532082 None:intergenic 50.0%
CCCCGACAATCATCAAGCAT+TGG - chr2_1:69532156-69532175 None:intergenic 50.0%
GATTGTCGGGGTAAACACGA+TGG + chr2_1:69532165-69532184 Msa0221020:CDS 50.0%
GGGTTCGATGAAGACAACGT+TGG - chr2_1:69532282-69532301 None:intergenic 50.0%
CATGGTCTCATTAGGACCAC+AGG - chr2_1:69533416-69533435 None:intergenic 50.0%
!! GGAGCTAACTACTTTGAGGC+AGG - chr2_1:69534137-69534156 None:intergenic 50.0%
!! CTCATCAAGAGGCACTGAAG+AGG + chr2_1:69534381-69534400 Msa0221020:CDS 50.0%
TGACCGACTGACTATGCACA+CGG - chr2_1:69534751-69534770 None:intergenic 50.0%
CATAGTCAGTCGGTCACATC+TGG + chr2_1:69534755-69534774 Msa0221020:intron 50.0%
TCACACGTTATTGGGTGGTG+AGG + chr2_1:69535094-69535113 Msa0221020:intron 50.0%
GGGAAACACATGTGCATCAG+TGG + chr2_1:69535233-69535252 Msa0221020:intron 50.0%
! TCCTCGACTTTTCCTCGGCA+AGG + chr2_1:69532079-69532098 Msa0221020:CDS 55.0%
CAGCACAAAGGTCACGTGTG+AGG + chr2_1:69532962-69532981 Msa0221020:CDS 55.0%
GCCTTGCCGAGGAAAAGTCG+AGG - chr2_1:69532083-69532102 None:intergenic 60.0%
! GACTTTTCCTCGGCAAGGCG+AGG + chr2_1:69532084-69532103 Msa0221020:CDS 60.0%
! CAAGGCGAGGCGCTCATAGA+AGG + chr2_1:69532097-69532116 Msa0221020:CDS 60.0%
! GCGAGGCGCTCATAGAAGGT+CGG + chr2_1:69532101-69532120 Msa0221020:CDS 60.0%
ATGAGCGCCTCGCCTTGCCG+AGG - chr2_1:69532094-69532113 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 69531517 69535658 69531517 ID=Msa0221020;Name=Msa0221020
chr2_1 mRNA 69531517 69535658 69531517 ID=Msa0221020-mRNA-1;Parent=Msa0221020;Name=Msa0221020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=408|1|1|1|0.8|0.66|6|203|352
chr2_1 exon 69531517 69532538 69531517 ID=Msa0221020-mRNA-1:exon:19684;Parent=Msa0221020-mRNA-1
chr2_1 exon 69532942 69533032 69532942 ID=Msa0221020-mRNA-1:exon:19685;Parent=Msa0221020-mRNA-1
chr2_1 exon 69533197 69533323 69533197 ID=Msa0221020-mRNA-1:exon:19686;Parent=Msa0221020-mRNA-1
chr2_1 exon 69534381 69534538 69534381 ID=Msa0221020-mRNA-1:exon:19687;Parent=Msa0221020-mRNA-1
chr2_1 exon 69535234 69535303 69535234 ID=Msa0221020-mRNA-1:exon:19688;Parent=Msa0221020-mRNA-1
chr2_1 exon 69535457 69535658 69535457 ID=Msa0221020-mRNA-1:exon:19689;Parent=Msa0221020-mRNA-1
chr2_1 five_prime_UTR 69531517 69531924 69531517 ID=Msa0221020-mRNA-1:five_prime_utr;Parent=Msa0221020-mRNA-1
chr2_1 CDS 69531925 69532538 69531925 ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1
chr2_1 CDS 69532942 69533032 69532942 ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1
chr2_1 CDS 69533197 69533323 69533197 ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1
chr2_1 CDS 69534381 69534538 69534381 ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1
chr2_1 CDS 69535234 69535302 69535234 ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1
chr2_1 three_prime_UTR 69535303 69535303 69535303 ID=Msa0221020-mRNA-1:three_prime_utr;Parent=Msa0221020-mRNA-1
chr2_1 three_prime_UTR 69535457 69535658 69535457 ID=Msa0221020-mRNA-1:three_prime_utr;Parent=Msa0221020-mRNA-1
Gene Sequence

>Msa0221020

ATGGCACAATTACCTCCTAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTTTCCAAACACCAAAAAAATATTATGCCAACATCCATTTCAACCAATAACATTGTCACTACAAACAATTATCAGAATCAGAACCCTTCATGGGTGGATGAGTTCCTCGACTTTTCCTCGGCAAGGCGAGGCGCTCATAGAAGGTCGGTCAGCGATTCAGTCACATTCTTAGAAAAACCAATGCTTGATGATTGTCGGGGTAAACACGATGGTAACGACAATGACAACGAGTTCGACAAGTTTGATGATGAACAATTTTTGTCCATGTTCAGTGATGAAATATCTGGTGTCAATAACATGCCACCAACGTTGTCTTCATCGAACCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGATAATGAGAAAGAGAAGAATAAACAAGAGAAGAAGGAAAATGATTTAGGAGAGATGAAGAAAGAGGAAGATGAGAAGCAATTGAAATATGAACCTGATGAGGTAGAAAGCCAATGCAAACAGGAAAATTCACAGCCTCAAAGTAACAACAACAATGCAACTTCTTCAAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGTAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTGCTATCTCCAAGAGTTGCATTTTTGGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTCAAGCAAAGAATTGCAGCCCTTGCACAAGACAAGCTTTTCAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAAAGATTAAGACAGGTATATCACCATCAGAACCTCAAGAAGATGGAAAATGCTAATGGATCACCCTTACCATCCCCATCACAAAAGCCAATATGTGATTCTCAAACAGAAAGCGAACAACTACTCAATGGAAACACATGTGCATCAGTGGCATCAAAAGAAAGGGTGGAAGAAACAGTTGTGTCTGCTTTAACATGA

Protein sequence

>Msa0221020

MAQLPPKIPNMSPSWPDFSKHQKNIMPTSISTNNIVTTNNYQNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLEKPMLDDCRGKHDGNDNDNEFDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNDDNEKEKNKQEKKENDLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYHHQNLKKMENANGSPLPSPSQKPICDSQTESEQLLNGNTCASVASKERVEETVVSALT*