Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221020 | XP_013465188.1 | 95.455 | 352 | 8 | 2 | 1 | 352 | 1 | 344 | 0.0 | 679 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221020 | sp|Q9M2K4|BZP61_ARATH | 59.130 | 345 | 109 | 10 | 1 | 330 | 1 | 328 | 3.31e-119 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221020 | G7ZUL8 | 95.455 | 352 | 8 | 2 | 1 | 352 | 1 | 344 | 0.0 | 679 |
Gene ID | Type | Classification |
---|---|---|
Msa0221020 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0221020 | Msa0262470 | 0.881234 | 2.842024e-70 | -8.615850e-47 |
Msa0221020 | Msa0300340 | 0.948869 | 3.999322e-107 | -8.615850e-47 |
Msa0221020 | Msa0337680 | 0.932096 | 1.421690e-94 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221020 | MtrunA17_Chr2g0325131 | 95.455 | 352 | 8 | 2 | 1 | 352 | 1 | 344 | 0.0 | 679 |
Msa0221020 | MtrunA17_Chr4g0040891 | 62.536 | 347 | 93 | 13 | 1 | 330 | 1 | 327 | 1.38e-124 | 361 |
Msa0221020 | MtrunA17_Chr2g0316551 | 53.560 | 323 | 117 | 10 | 1 | 302 | 1 | 311 | 3.72e-95 | 286 |
Msa0221020 | MtrunA17_Chr8g0380611 | 35.094 | 265 | 145 | 8 | 44 | 294 | 73 | 324 | 6.20e-28 | 112 |
Msa0221020 | MtrunA17_Chr5g0432701 | 48.936 | 94 | 48 | 0 | 198 | 291 | 158 | 251 | 2.68e-20 | 90.9 |
Msa0221020 | MtrunA17_Chr4g0036071 | 48.454 | 97 | 50 | 0 | 197 | 293 | 358 | 454 | 5.12e-20 | 90.9 |
Msa0221020 | MtrunA17_Chr2g0329551 | 44.737 | 114 | 58 | 2 | 197 | 310 | 219 | 327 | 3.30e-19 | 88.2 |
Msa0221020 | MtrunA17_Chr3g0107491 | 46.237 | 93 | 50 | 0 | 199 | 291 | 177 | 269 | 1.78e-18 | 85.5 |
Msa0221020 | MtrunA17_Chr6g0463571 | 46.000 | 100 | 54 | 0 | 197 | 296 | 149 | 248 | 6.67e-18 | 83.2 |
Msa0221020 | MtrunA17_Chr3g0128781 | 45.745 | 94 | 51 | 0 | 198 | 291 | 107 | 200 | 3.72e-17 | 81.3 |
Msa0221020 | MtrunA17_Chr1g0156051 | 48.980 | 98 | 46 | 2 | 198 | 293 | 386 | 481 | 1.46e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0221020 | AT3G58120.1 | 59.130 | 345 | 109 | 10 | 1 | 330 | 1 | 328 | 3.36e-120 | 350 |
Msa0221020 | AT2G42380.2 | 57.101 | 345 | 107 | 8 | 1 | 330 | 1 | 319 | 5.26e-114 | 334 |
Msa0221020 | AT2G42380.1 | 53.623 | 345 | 108 | 9 | 1 | 330 | 1 | 308 | 2.81e-102 | 304 |
Msa0221020 | AT3G58120.2 | 58.020 | 293 | 96 | 8 | 1 | 278 | 1 | 281 | 4.78e-100 | 297 |
Msa0221020 | AT2G42380.5 | 56.701 | 291 | 87 | 7 | 1 | 278 | 1 | 265 | 1.00e-92 | 278 |
Msa0221020 | AT2G42380.3 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 1.57e-61 | 197 |
Msa0221020 | AT2G42380.4 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 1.57e-61 | 197 |
Msa0221020 | AT1G58110.1 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 9.07e-27 | 109 |
Msa0221020 | AT1G58110.2 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 9.07e-27 | 109 |
Msa0221020 | AT1G43700.1 | 46.491 | 114 | 56 | 1 | 185 | 293 | 175 | 288 | 7.48e-21 | 92.4 |
Msa0221020 | AT4G38900.2 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 6.56e-20 | 91.3 |
Msa0221020 | AT4G38900.3 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 6.56e-20 | 91.3 |
Msa0221020 | AT5G04840.1 | 29.605 | 304 | 162 | 8 | 2 | 296 | 5 | 265 | 7.29e-20 | 89.0 |
Msa0221020 | AT2G40620.1 | 46.316 | 95 | 51 | 0 | 197 | 291 | 146 | 240 | 5.14e-19 | 87.4 |
Msa0221020 | AT1G06850.1 | 48.387 | 93 | 48 | 0 | 199 | 291 | 148 | 240 | 1.61e-18 | 85.9 |
Msa0221020 | AT1G06070.1 | 46.316 | 95 | 51 | 0 | 197 | 291 | 208 | 302 | 1.68e-18 | 86.7 |
Msa0221020 | AT2G21230.4 | 36.486 | 148 | 89 | 2 | 197 | 340 | 368 | 514 | 3.14e-18 | 86.3 |
Msa0221020 | AT2G21230.1 | 36.486 | 148 | 89 | 2 | 197 | 340 | 368 | 514 | 3.14e-18 | 86.3 |
Msa0221020 | AT2G31370.5 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.56e-18 | 84.7 |
Msa0221020 | AT2G31370.2 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT2G31370.4 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT2G31370.1 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT2G31370.7 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT2G31370.3 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT2G31370.6 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 5.58e-18 | 84.7 |
Msa0221020 | AT4G38900.1 | 45.545 | 101 | 49 | 1 | 197 | 291 | 392 | 492 | 1.17e-17 | 84.7 |
Msa0221020 | AT5G04840.2 | 29.720 | 286 | 149 | 8 | 2 | 278 | 5 | 247 | 1.14e-16 | 79.0 |
Msa0221020 | AT1G35490.2 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 1.51e-16 | 79.7 |
Msa0221020 | AT1G35490.1 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 1.51e-16 | 79.7 |
Msa0221020 | AT2G21230.3 | 34.416 | 154 | 90 | 3 | 197 | 340 | 368 | 520 | 7.13e-16 | 79.0 |
Msa0221020 | AT2G21230.2 | 46.341 | 82 | 44 | 0 | 197 | 278 | 368 | 449 | 4.22e-14 | 73.6 |
Msa0221020 | AT5G07160.1 | 41.237 | 97 | 57 | 0 | 195 | 291 | 44 | 140 | 3.16e-12 | 64.3 |
Msa0221020 | AT1G06850.2 | 68.889 | 45 | 14 | 0 | 198 | 242 | 147 | 191 | 5.72e-11 | 62.4 |
Find 77 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATTCCCTTGTGTGGTTTC+TGG | 0.097414 | 2_1:+69531682 | Msa0221020:five_prime_UTR |
GAAATATACATATTTATTAA+AGG | 0.205907 | 2_1:+69531704 | Msa0221020:five_prime_UTR |
GGTGACATGTTTGGGATCTT+AGG | 0.259620 | 2_1:-69531940 | None:intergenic |
GTTTGTAGTGACAATGTTAT+TGG | 0.263094 | 2_1:-69532019 | None:intergenic |
TTTGAGGTCTTGGATTTAAT+TGG | 0.274873 | 2_1:+69535520 | Msa0221020:three_prime_UTR |
GCATTAGAATCTTGGCAAAT+AGG | 0.275046 | 2_1:+69532935 | Msa0221020:intron |
CCTCAAATTTGTTGTTGTTA+AGG | 0.275676 | 2_1:-69531855 | None:intergenic |
GAGAAGAAGGAAAATGATTT+AGG | 0.296863 | 2_1:+69532363 | Msa0221020:CDS |
GCCAACTTGGTGACATGTTT+GGG | 0.333815 | 2_1:-69531948 | None:intergenic |
TTATTAAAGGGTTGTGTTAG+AGG | 0.345247 | 2_1:+69531717 | Msa0221020:five_prime_UTR |
CATTGGCTTTCTACCTCATC+AGG | 0.351950 | 2_1:-69532429 | None:intergenic |
AAATATACATATTTATTAAA+GGG | 0.356758 | 2_1:+69531705 | Msa0221020:five_prime_UTR |
AAATTGCGCTGTATATATAA+TGG | 0.357460 | 2_1:+69535628 | Msa0221020:three_prime_UTR |
GGTCTTGGATTTAATTGGTT+TGG | 0.375520 | 2_1:+69535525 | Msa0221020:three_prime_UTR |
GCGTAGTGTAACTTCATTGC+AGG | 0.377738 | 2_1:+69533011 | Msa0221020:CDS |
GGCCAACTTGGTGACATGTT+TGG | 0.381627 | 2_1:-69531949 | None:intergenic |
ACCAATGCTTGATGATTGTC+GGG | 0.385706 | 2_1:+69532152 | Msa0221020:CDS |
GACAATGTTATTGGTTGAAA+TGG | 0.385822 | 2_1:-69532010 | None:intergenic |
TCTGTTTGAGAATCACATAT+TGG | 0.388915 | 2_1:-69534497 | None:intergenic |
CCATCTTCTTGAGGTTCTGA+TGG | 0.391631 | 2_1:-69534433 | None:intergenic |
GAAGAATAAACAAGAGAAGA+AGG | 0.396694 | 2_1:+69532350 | Msa0221020:CDS |
AAGAAGATGGAAAATGCTAA+TGG | 0.406779 | 2_1:+69534446 | Msa0221020:CDS |
CCTTAACAACAACAAATTTG+AGG | 0.410672 | 2_1:+69531855 | Msa0221020:five_prime_UTR |
ATCAGAATCAGAACCCTTCA+TGG | 0.433073 | 2_1:+69532046 | Msa0221020:CDS |
ACCACACAAGGGAATGTTAG+AGG | 0.439664 | 2_1:-69531676 | None:intergenic |
GGAGATAGAAAGATTAAGAC+AGG | 0.441141 | 2_1:+69534403 | Msa0221020:CDS |
GCATTGTTGTTGTTACTTTG+AGG | 0.444336 | 2_1:-69532471 | None:intergenic |
TACAAAACTATATAACAAAC+AGG | 0.456508 | 2_1:-69531890 | None:intergenic |
CCCTCTAACATTCCCTTGTG+TGG | 0.457112 | 2_1:+69531675 | Msa0221020:five_prime_UTR |
CAAGGCGAGGCGCTCATAGA+AGG | 0.460166 | 2_1:+69532097 | Msa0221020:CDS |
AACCAATGCTTGATGATTGT+CGG | 0.461826 | 2_1:+69532151 | Msa0221020:CDS |
ATTAACATACAATGTATGAA+TGG | 0.472844 | 2_1:-69531766 | None:intergenic |
AATGTGGAGTGTGATGGATA+TGG | 0.473304 | 2_1:+69535471 | Msa0221020:three_prime_UTR |
CATCAGTGGCATCAAAAGAA+AGG | 0.482392 | 2_1:+69535247 | Msa0221020:CDS |
TTCTGATCTGAAGGACTCGA+AGG | 0.485897 | 2_1:-69532300 | None:intergenic |
GGTAGAAAGCCAATGCAAAC+AGG | 0.488493 | 2_1:+69532437 | Msa0221020:CDS |
CCATCAGAACCTCAAGAAGA+TGG | 0.490491 | 2_1:+69534433 | Msa0221020:CDS |
CCCCGACAATCATCAAGCAT+TGG | 0.494005 | 2_1:-69532153 | None:intergenic |
TTAACATACAATGTATGAAT+GGG | 0.503238 | 2_1:-69531765 | None:intergenic |
ATGTTCAGTGATGAAATATC+TGG | 0.505923 | 2_1:+69532240 | Msa0221020:CDS |
TGAAAAGCTTGTCTTGTGCA+AGG | 0.507196 | 2_1:-69533295 | None:intergenic |
TTATTGGTTGAAATGGATGT+TGG | 0.515770 | 2_1:-69532003 | None:intergenic |
TTGACAAAATTCTGATCTGA+AGG | 0.516864 | 2_1:-69532309 | None:intergenic |
TTTAGGAGAGATGAAGAAAG+AGG | 0.538946 | 2_1:+69532380 | Msa0221020:CDS |
AGGAACTCATCCACCCATGA+AGG | 0.539506 | 2_1:-69532060 | None:intergenic |
GAAAAGCTTGTCTTGTGCAA+GGG | 0.539760 | 2_1:-69533294 | None:intergenic |
ATATGGATAAAATGAAAGAA+AGG | 0.562865 | 2_1:+69535488 | Msa0221020:three_prime_UTR |
TCATCAAGAGGCACTGAAGA+GGG | 0.563124 | 2_1:+69534382 | Msa0221020:CDS |
AGATATTTCATCACTGAACA+TGG | 0.569631 | 2_1:-69532238 | None:intergenic |
CTGATCCAAAGAGAGTCAAA+AGG | 0.572655 | 2_1:+69532517 | Msa0221020:CDS |
ATCAGTGGCATCAAAAGAAA+GGG | 0.574757 | 2_1:+69535248 | Msa0221020:CDS |
TTCGATGAAGACAACGTTGG+TGG | 0.575587 | 2_1:-69532276 | None:intergenic |
TCCCAAACATGTCACCAAGT+TGG | 0.580152 | 2_1:+69531947 | Msa0221020:CDS |
GGGAAACACATGTGCATCAG+TGG | 0.585339 | 2_1:+69535233 | Msa0221020:intron |
AAAACAAAGACAATGGCTTG+TGG | 0.588542 | 2_1:+69535448 | Msa0221020:intron |
GACATGTTTGGGATCTTAGG+AGG | 0.588767 | 2_1:-69531937 | None:intergenic |
CTCATCAAGAGGCACTGAAG+AGG | 0.590175 | 2_1:+69534381 | Msa0221020:CDS |
TTGTGGAATGTGGAGTGTGA+TGG | 0.590221 | 2_1:+69535465 | Msa0221020:three_prime_UTR |
CCACACAAGGGAATGTTAGA+GGG | 0.594577 | 2_1:-69531675 | None:intergenic |
TTTACATGCAGCTCATCAAG+AGG | 0.601727 | 2_1:+69534370 | Msa0221020:intron |
GAATCAGAACCCTTCATGGG+TGG | 0.607660 | 2_1:+69532050 | Msa0221020:CDS |
ATTGAAATATGAACCTGATG+AGG | 0.608223 | 2_1:+69532416 | Msa0221020:CDS |
TCAGAATCAGAACCCTTCAT+GGG | 0.609308 | 2_1:+69532047 | Msa0221020:CDS |
TCTGATCTGAAGGACTCGAA+GGG | 0.610267 | 2_1:-69532299 | None:intergenic |
AGACAATGGCTTGTGGAATG+TGG | 0.619824 | 2_1:+69535455 | Msa0221020:intron |
GGAACTCATCCACCCATGAA+GGG | 0.626852 | 2_1:-69532059 | None:intergenic |
AGTGGCATCAAAAGAAAGGG+TGG | 0.627047 | 2_1:+69535251 | Msa0221020:CDS |
CAAATAGGCAATCAGCACAA+AGG | 0.647617 | 2_1:+69532950 | Msa0221020:CDS |
ATGAGCGCCTCGCCTTGCCG+AGG | 0.647953 | 2_1:-69532091 | None:intergenic |
CAGCACAAAGGTCACGTGTG+AGG | 0.661809 | 2_1:+69532962 | Msa0221020:CDS |
GCGAGGCGCTCATAGAAGGT+CGG | 0.662721 | 2_1:+69532101 | Msa0221020:CDS |
GCCTTGCCGAGGAAAAGTCG+AGG | 0.688307 | 2_1:-69532080 | None:intergenic |
GATTGTCGGGGTAAACACGA+TGG | 0.708511 | 2_1:+69532165 | Msa0221020:CDS |
GGGTTCGATGAAGACAACGT+TGG | 0.721008 | 2_1:-69532279 | None:intergenic |
ATATTTCCAGAAACCACACA+AGG | 0.726763 | 2_1:-69531688 | None:intergenic |
CCAATGCTTGATGATTGTCG+GGG | 0.731647 | 2_1:+69532153 | Msa0221020:CDS |
TATTTCCAGAAACCACACAA+GGG | 0.750776 | 2_1:-69531687 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATAAAAAAAAATGTTAAA+GGG | - | chr2_1:69531520-69531539 | None:intergenic | 10.0% |
!!! | TTTTGTTTTTTTAATTAACT+TGG | + | chr2_1:69531645-69531664 | Msa0221020:five_prime_UTR | 10.0% |
!! | GAAATATACATATTTATTAA+AGG | + | chr2_1:69531704-69531723 | Msa0221020:five_prime_UTR | 10.0% |
!!! | GTTTTATTAATAATAATTAC+TGG | + | chr2_1:69534236-69534255 | Msa0221020:intron | 10.0% |
!! | CCTATAAAAAAAAATGTTAA+AGG | - | chr2_1:69531521-69531540 | None:intergenic | 15.0% |
!!! | CCTTTAACATTTTTTTTTAT+AGG | + | chr2_1:69531518-69531537 | Msa0221020:five_prime_UTR | 15.0% |
!! | AGATAAAAATTAAAACATGT+AGG | + | chr2_1:69532567-69532586 | Msa0221020:intron | 15.0% |
!! | ATGAAATGACAAAATAAAAA+TGG | + | chr2_1:69533447-69533466 | Msa0221020:intron | 15.0% |
!! | AGAATTAATATCAATATTGA+AGG | + | chr2_1:69533900-69533919 | Msa0221020:intron | 15.0% |
!! | ATATTTGAAAAATACTTAGT+TGG | - | chr2_1:69534101-69534120 | None:intergenic | 15.0% |
!! | TTTAAATCTGATAAGTAAAA+AGG | - | chr2_1:69534158-69534177 | None:intergenic | 15.0% |
!! | AATTAATGAAAAACAATGAT+TGG | - | chr2_1:69534262-69534281 | None:intergenic | 15.0% |
!! | CTAAATAGTATTAACTATTA+AGG | - | chr2_1:69534294-69534313 | None:intergenic | 15.0% |
!!! | ATTGCAGAATTTTTTTTATA+AGG | + | chr2_1:69534645-69534664 | Msa0221020:intron | 15.0% |
!! | TCTATATAGAAAAAATTGAA+TGG | + | chr2_1:69535323-69535342 | Msa0221020:intron | 15.0% |
!! | TTAACATACAATGTATGAAT+GGG | - | chr2_1:69531768-69531787 | None:intergenic | 20.0% |
!! | ATTAACATACAATGTATGAA+TGG | - | chr2_1:69531769-69531788 | None:intergenic | 20.0% |
!! | TACAAAACTATATAACAAAC+AGG | - | chr2_1:69531893-69531912 | None:intergenic | 20.0% |
!!! | CATAATATTTTTTTGGTGTT+TGG | - | chr2_1:69531983-69532002 | None:intergenic | 20.0% |
!!! | ATGTTGGCATAATATTTTTT+TGG | - | chr2_1:69531990-69532009 | None:intergenic | 20.0% |
!! | AATTGAAATATTGTTGATCT+TGG | + | chr2_1:69532819-69532838 | Msa0221020:intron | 20.0% |
!! | AAATTTAATAAGAGTGAAAC+AGG | + | chr2_1:69533544-69533563 | Msa0221020:intron | 20.0% |
!! | TATATTAACTACTTTGTGAT+GGG | - | chr2_1:69533660-69533679 | None:intergenic | 20.0% |
!!! | TCTTGAAATTTTGATACATA+GGG | - | chr2_1:69533762-69533781 | None:intergenic | 20.0% |
!! | AAGTATTTGTACATTCTATT+TGG | - | chr2_1:69534074-69534093 | None:intergenic | 20.0% |
!!! | GTAAAATATCCATTTTGAAA+AGG | + | chr2_1:69535049-69535068 | Msa0221020:intron | 20.0% |
!!! | ATTTAGTTTCCTTTTCAAAA+TGG | - | chr2_1:69535061-69535080 | None:intergenic | 20.0% |
!! | ATATAGAAAAAATTGAATGG+AGG | + | chr2_1:69535326-69535345 | Msa0221020:intron | 20.0% |
!!! | TTTATCTTTTTCAATCCATT+TGG | + | chr2_1:69535424-69535443 | Msa0221020:intron | 20.0% |
!! | ATATGGATAAAATGAAAGAA+AGG | + | chr2_1:69535488-69535507 | Msa0221020:three_prime_UTR | 20.0% |
!!! | GTTTTTTTGCATTAGAATCT+TGG | + | chr2_1:69532927-69532946 | Msa0221020:intron | 25.0% |
! | ATTTGCAGTACTATAATATC+TGG | + | chr2_1:69533081-69533100 | Msa0221020:intron | 25.0% |
! | ATATATATTTGGACAGTAGA+AGG | - | chr2_1:69533172-69533191 | None:intergenic | 25.0% |
! | ACTGTCCAAATATATATTGA+AGG | + | chr2_1:69533175-69533194 | Msa0221020:intron | 25.0% |
! | TTCAGCCTTCAATATATATT+TGG | - | chr2_1:69533183-69533202 | None:intergenic | 25.0% |
! | ATATTAACTACTTTGTGATG+GGG | - | chr2_1:69533659-69533678 | None:intergenic | 25.0% |
! | GTATATTAACTACTTTGTGA+TGG | - | chr2_1:69533661-69533680 | None:intergenic | 25.0% |
!!! | CTTGAAATTTTGATACATAG+GGG | - | chr2_1:69533761-69533780 | None:intergenic | 25.0% |
!!! | CTCTTGAAATTTTGATACAT+AGG | - | chr2_1:69533763-69533782 | None:intergenic | 25.0% |
! | GTTAGTCAAAATAGTTTCTT+AGG | + | chr2_1:69533801-69533820 | Msa0221020:intron | 25.0% |
!! | AAGGAAAATGAGAGATTTTA+AGG | + | chr2_1:69534664-69534683 | Msa0221020:intron | 25.0% |
!!! | AAATGAGAGATTTTAAGGAA+AGG | + | chr2_1:69534669-69534688 | Msa0221020:intron | 25.0% |
!!! | AATGAGAGATTTTAAGGAAA+GGG | + | chr2_1:69534670-69534689 | Msa0221020:intron | 25.0% |
! | AAAATAGCGAACTTAAAACT+TGG | + | chr2_1:69534799-69534818 | Msa0221020:intron | 25.0% |
!!! | TGTGTTTTGCTTTAAAAGAA+AGG | + | chr2_1:69535179-69535198 | Msa0221020:intron | 25.0% |
!!! | GTGTTTTGCTTTAAAAGAAA+GGG | + | chr2_1:69535180-69535199 | Msa0221020:intron | 25.0% |
!!! | ATTGTCTTTGTTTTTCCAAA+TGG | - | chr2_1:69535442-69535461 | None:intergenic | 25.0% |
! | ATTTGGAAAAACAAAGACAA+TGG | + | chr2_1:69535441-69535460 | Msa0221020:intron | 25.0% |
! | AAATTGCGCTGTATATATAA+TGG | + | chr2_1:69535628-69535647 | Msa0221020:three_prime_UTR | 25.0% |
TTATTAAAGGGTTGTGTTAG+AGG | + | chr2_1:69531717-69531736 | Msa0221020:five_prime_UTR | 30.0% | |
!! | CCTCAAATTTGTTGTTGTTA+AGG | - | chr2_1:69531858-69531877 | None:intergenic | 30.0% |
CCTTAACAACAACAAATTTG+AGG | + | chr2_1:69531855-69531874 | Msa0221020:five_prime_UTR | 30.0% | |
! | TTTTGTACATCTCTCTCAAA+TGG | + | chr2_1:69531906-69531925 | Msa0221020:exon | 30.0% |
!!! | TTTTGGTGTTTGGAAAAATC+TGG | - | chr2_1:69531973-69531992 | None:intergenic | 30.0% |
! | TTATTGGTTGAAATGGATGT+TGG | - | chr2_1:69532006-69532025 | None:intergenic | 30.0% |
! | GACAATGTTATTGGTTGAAA+TGG | - | chr2_1:69532013-69532032 | None:intergenic | 30.0% |
GTTTGTAGTGACAATGTTAT+TGG | - | chr2_1:69532022-69532041 | None:intergenic | 30.0% | |
AGATATTTCATCACTGAACA+TGG | - | chr2_1:69532241-69532260 | None:intergenic | 30.0% | |
ATGTTCAGTGATGAAATATC+TGG | + | chr2_1:69532240-69532259 | Msa0221020:CDS | 30.0% | |
TTGACAAAATTCTGATCTGA+AGG | - | chr2_1:69532312-69532331 | None:intergenic | 30.0% | |
GAAGAATAAACAAGAGAAGA+AGG | + | chr2_1:69532350-69532369 | Msa0221020:CDS | 30.0% | |
GAGAAGAAGGAAAATGATTT+AGG | + | chr2_1:69532363-69532382 | Msa0221020:CDS | 30.0% | |
ATTGAAATATGAACCTGATG+AGG | + | chr2_1:69532416-69532435 | Msa0221020:CDS | 30.0% | |
!! | AATTACCTTTTGACTCTCTT+TGG | - | chr2_1:69532525-69532544 | None:intergenic | 30.0% |
AAAATTGTGTCATGTCATGT+GGG | - | chr2_1:69532708-69532727 | None:intergenic | 30.0% | |
AAAAATTGTGTCATGTCATG+TGG | - | chr2_1:69532709-69532728 | None:intergenic | 30.0% | |
CAGTGCTATATATAGCTTAT+TGG | - | chr2_1:69533483-69533502 | None:intergenic | 30.0% | |
TATTAACTACTTTGTGATGG+GGG | - | chr2_1:69533658-69533677 | None:intergenic | 30.0% | |
ATTATTGTGCTTACTCGTTA+GGG | + | chr2_1:69533923-69533942 | Msa0221020:intron | 30.0% | |
TACTATTTAGACACATAGCT+AGG | + | chr2_1:69534304-69534323 | Msa0221020:intron | 30.0% | |
ACTATTTAGACACATAGCTA+GGG | + | chr2_1:69534305-69534324 | Msa0221020:intron | 30.0% | |
AAGAAGATGGAAAATGCTAA+TGG | + | chr2_1:69534446-69534465 | Msa0221020:CDS | 30.0% | |
TCTGTTTGAGAATCACATAT+TGG | - | chr2_1:69534500-69534519 | None:intergenic | 30.0% | |
AAGGAAAGGGAAAATAAATG+AGG | + | chr2_1:69534683-69534702 | Msa0221020:intron | 30.0% | |
AGGAAAGGGAAAATAAATGA+GGG | + | chr2_1:69534684-69534703 | Msa0221020:intron | 30.0% | |
ATTGTTTAATCTTACTCGCA+CGG | + | chr2_1:69534822-69534841 | Msa0221020:intron | 30.0% | |
TAGATATGACTGACAACATA+TGG | + | chr2_1:69534847-69534866 | Msa0221020:intron | 30.0% | |
ATAATCGACTGTAAATTCAG+CGG | - | chr2_1:69534976-69534995 | None:intergenic | 30.0% | |
!!! | ACTTGTTTTTATGCCACATT+TGG | - | chr2_1:69535029-69535048 | None:intergenic | 30.0% |
TACTACTACTAGTACAAGTA+GGG | + | chr2_1:69535123-69535142 | Msa0221020:intron | 30.0% | |
! | TTTGAGGTCTTGGATTTAAT+TGG | + | chr2_1:69535520-69535539 | Msa0221020:three_prime_UTR | 30.0% |
TATTTCCAGAAACCACACAA+GGG | - | chr2_1:69531690-69531709 | None:intergenic | 35.0% | |
ATATTTCCAGAAACCACACA+AGG | - | chr2_1:69531691-69531710 | None:intergenic | 35.0% | |
! | AACCAATGCTTGATGATTGT+CGG | + | chr2_1:69532151-69532170 | Msa0221020:CDS | 35.0% |
TTTAGGAGAGATGAAGAAAG+AGG | + | chr2_1:69532380-69532399 | Msa0221020:CDS | 35.0% | |
! | GTGAATTTTCCTGTTTGCAT+TGG | - | chr2_1:69532449-69532468 | None:intergenic | 35.0% |
!! | GCATTGTTGTTGTTACTTTG+AGG | - | chr2_1:69532474-69532493 | None:intergenic | 35.0% |
GAATCAGTTGCAAAACTCAA+AGG | - | chr2_1:69532905-69532924 | None:intergenic | 35.0% | |
!! | TTGAGTTTTGCAACTGATTC+TGG | + | chr2_1:69532905-69532924 | Msa0221020:intron | 35.0% |
GCATTAGAATCTTGGCAAAT+AGG | + | chr2_1:69532935-69532954 | Msa0221020:intron | 35.0% | |
! | ATCTCCAAGAGTTGCATTTT+TGG | + | chr2_1:69533214-69533233 | Msa0221020:CDS | 35.0% |
TGATCCAAAAATGCAACTCT+TGG | - | chr2_1:69533221-69533240 | None:intergenic | 35.0% | |
! | CAAGACAAGCTTTTCAAAGA+TGG | + | chr2_1:69533302-69533321 | Msa0221020:CDS | 35.0% |
!! | ATTTCATGCTTGACTTGTCA+TGG | - | chr2_1:69533434-69533453 | None:intergenic | 35.0% |
AGTCTACTATCATTTGAGCT+CGG | + | chr2_1:69533687-69533706 | Msa0221020:intron | 35.0% | |
GATTATTGTGCTTACTCGTT+AGG | + | chr2_1:69533922-69533941 | Msa0221020:intron | 35.0% | |
TATGTTTGTGTGCGTTCAAA+TGG | - | chr2_1:69533966-69533985 | None:intergenic | 35.0% | |
AAAAGGAGCTAACTACTTTG+AGG | - | chr2_1:69534141-69534160 | None:intergenic | 35.0% | |
GGAGATAGAAAGATTAAGAC+AGG | + | chr2_1:69534403-69534422 | Msa0221020:CDS | 35.0% | |
! | TAGCATTTTCCATCTTCTTG+AGG | - | chr2_1:69534445-69534464 | None:intergenic | 35.0% |
!!! | ACATATTGGCTTTTGTGATG+GGG | - | chr2_1:69534486-69534505 | None:intergenic | 35.0% |
!!! | CACATATTGGCTTTTGTGAT+GGG | - | chr2_1:69534487-69534506 | None:intergenic | 35.0% |
!!! | TCACATATTGGCTTTTGTGA+TGG | - | chr2_1:69534488-69534507 | None:intergenic | 35.0% |
CACACGGTTACAATTACATA+AGG | - | chr2_1:69534735-69534754 | None:intergenic | 35.0% | |
AATAGAACATGAGTTGCATG+CGG | - | chr2_1:69534887-69534906 | None:intergenic | 35.0% | |
AGACCGTTCGATTAATCTAA+CGG | + | chr2_1:69534996-69535015 | Msa0221020:intron | 35.0% | |
AGACCGTTAGATTAATCGAA+CGG | - | chr2_1:69535002-69535021 | None:intergenic | 35.0% | |
TTTGAAGAGTCACACGTTAT+TGG | + | chr2_1:69535085-69535104 | Msa0221020:intron | 35.0% | |
TTGAAGAGTCACACGTTATT+GGG | + | chr2_1:69535086-69535105 | Msa0221020:intron | 35.0% | |
GTACTACTACTAGTACAAGT+AGG | + | chr2_1:69535122-69535141 | Msa0221020:intron | 35.0% | |
ATCAGTGGCATCAAAAGAAA+GGG | + | chr2_1:69535248-69535267 | Msa0221020:CDS | 35.0% | |
AAAACAAAGACAATGGCTTG+TGG | + | chr2_1:69535448-69535467 | Msa0221020:intron | 35.0% | |
GGTCTTGGATTTAATTGGTT+TGG | + | chr2_1:69535525-69535544 | Msa0221020:three_prime_UTR | 35.0% | |
TTGGAAAAATCTGGCCAACT+TGG | - | chr2_1:69531964-69531983 | None:intergenic | 40.0% | |
ATCAGAATCAGAACCCTTCA+TGG | + | chr2_1:69532046-69532065 | Msa0221020:CDS | 40.0% | |
TCAGAATCAGAACCCTTCAT+GGG | + | chr2_1:69532047-69532066 | Msa0221020:CDS | 40.0% | |
! | ACCAATGCTTGATGATTGTC+GGG | + | chr2_1:69532152-69532171 | Msa0221020:CDS | 40.0% |
CTGATCCAAAGAGAGTCAAA+AGG | + | chr2_1:69532517-69532536 | Msa0221020:CDS | 40.0% | |
CAAATAGGCAATCAGCACAA+AGG | + | chr2_1:69532950-69532969 | Msa0221020:CDS | 40.0% | |
GAAAAGCTTGTCTTGTGCAA+GGG | - | chr2_1:69533297-69533316 | None:intergenic | 40.0% | |
TGAAAAGCTTGTCTTGTGCA+AGG | - | chr2_1:69533298-69533317 | None:intergenic | 40.0% | |
GTGAAAGAATATGTACCCTG+TGG | + | chr2_1:69533397-69533416 | Msa0221020:intron | 40.0% | |
! | TGACTTGTCATGGTCTCATT+AGG | - | chr2_1:69533424-69533443 | None:intergenic | 40.0% |
GCACTGTAGTTACTTGAAGT+TGG | + | chr2_1:69533497-69533516 | Msa0221020:intron | 40.0% | |
GTTGGTCAAGTATTCACTAG+TGG | + | chr2_1:69533515-69533534 | Msa0221020:intron | 40.0% | |
TGTGTGCAGTCTCATAACTA+TGG | - | chr2_1:69533571-69533590 | None:intergenic | 40.0% | |
GGGCACATGATCACATAAAT+AGG | - | chr2_1:69533638-69533657 | None:intergenic | 40.0% | |
GTCTACTATCATTTGAGCTC+GGG | + | chr2_1:69533688-69533707 | Msa0221020:intron | 40.0% | |
TTTACATGCAGCTCATCAAG+AGG | + | chr2_1:69534370-69534389 | Msa0221020:intron | 40.0% | |
!! | TTTTGTGATGGGGATGGTAA+GGG | - | chr2_1:69534476-69534495 | None:intergenic | 40.0% |
GACTGACAACATATGGTTAG+AGG | + | chr2_1:69534854-69534873 | Msa0221020:intron | 40.0% | |
TAACGGTCTACAACCAAATG+TGG | + | chr2_1:69535013-69535032 | Msa0221020:intron | 40.0% | |
CCAATCATGCAAACTTTGAG+TGG | - | chr2_1:69535207-69535226 | None:intergenic | 40.0% | |
CCACTCAAAGTTTGCATGAT+TGG | + | chr2_1:69535204-69535223 | Msa0221020:intron | 40.0% | |
AGTTTGCATGATTGGAATGC+AGG | + | chr2_1:69535212-69535231 | Msa0221020:intron | 40.0% | |
GTTTGCATGATTGGAATGCA+GGG | + | chr2_1:69535213-69535232 | Msa0221020:intron | 40.0% | |
CATCAGTGGCATCAAAAGAA+AGG | + | chr2_1:69535247-69535266 | Msa0221020:CDS | 40.0% | |
!! | AATGTGGAGTGTGATGGATA+TGG | + | chr2_1:69535471-69535490 | Msa0221020:three_prime_UTR | 40.0% |
!! | AGAAAGGTGTGTCAGTTTTG+AGG | + | chr2_1:69535504-69535523 | Msa0221020:three_prime_UTR | 40.0% |
CCACACAAGGGAATGTTAGA+GGG | - | chr2_1:69531678-69531697 | None:intergenic | 45.0% | |
ACCACACAAGGGAATGTTAG+AGG | - | chr2_1:69531679-69531698 | None:intergenic | 45.0% | |
ACATTCCCTTGTGTGGTTTC+TGG | + | chr2_1:69531682-69531701 | Msa0221020:five_prime_UTR | 45.0% | |
! | GACATGTTTGGGATCTTAGG+AGG | - | chr2_1:69531940-69531959 | None:intergenic | 45.0% |
! | GGTGACATGTTTGGGATCTT+AGG | - | chr2_1:69531943-69531962 | None:intergenic | 45.0% |
TCCCAAACATGTCACCAAGT+TGG | + | chr2_1:69531947-69531966 | Msa0221020:CDS | 45.0% | |
! | GCCAACTTGGTGACATGTTT+GGG | - | chr2_1:69531951-69531970 | None:intergenic | 45.0% |
! | TGAGTTCCTCGACTTTTCCT+CGG | + | chr2_1:69532074-69532093 | Msa0221020:CDS | 45.0% |
! | CCAATGCTTGATGATTGTCG+GGG | + | chr2_1:69532153-69532172 | Msa0221020:CDS | 45.0% |
TTCGATGAAGACAACGTTGG+TGG | - | chr2_1:69532279-69532298 | None:intergenic | 45.0% | |
TCTGATCTGAAGGACTCGAA+GGG | - | chr2_1:69532302-69532321 | None:intergenic | 45.0% | |
TTCTGATCTGAAGGACTCGA+AGG | - | chr2_1:69532303-69532322 | None:intergenic | 45.0% | |
!! | CATTGGCTTTCTACCTCATC+AGG | - | chr2_1:69532432-69532451 | None:intergenic | 45.0% |
GGTAGAAAGCCAATGCAAAC+AGG | + | chr2_1:69532437-69532456 | Msa0221020:CDS | 45.0% | |
GCGTAGTGTAACTTCATTGC+AGG | + | chr2_1:69533011-69533030 | Msa0221020:CDS | 45.0% | |
ATGGTCTCATTAGGACCACA+GGG | - | chr2_1:69533415-69533434 | None:intergenic | 45.0% | |
!! | TCATCAAGAGGCACTGAAGA+GGG | + | chr2_1:69534382-69534401 | Msa0221020:CDS | 45.0% |
! | CCATCTTCTTGAGGTTCTGA+TGG | - | chr2_1:69534436-69534455 | None:intergenic | 45.0% |
CCATCAGAACCTCAAGAAGA+TGG | + | chr2_1:69534433-69534452 | Msa0221020:CDS | 45.0% | |
!! | CTTTTGTGATGGGGATGGTA+AGG | - | chr2_1:69534477-69534496 | None:intergenic | 45.0% |
!!! | ATTGGCTTTTGTGATGGGGA+TGG | - | chr2_1:69534482-69534501 | None:intergenic | 45.0% |
TAACCGTGTGCATAGTCAGT+CGG | + | chr2_1:69534745-69534764 | Msa0221020:intron | 45.0% | |
AAGAGTCACACGTTATTGGG+TGG | + | chr2_1:69535089-69535108 | Msa0221020:intron | 45.0% | |
AGTGGCATCAAAAGAAAGGG+TGG | + | chr2_1:69535251-69535270 | Msa0221020:CDS | 45.0% | |
! | AGACAATGGCTTGTGGAATG+TGG | + | chr2_1:69535455-69535474 | Msa0221020:intron | 45.0% |
TTGTGGAATGTGGAGTGTGA+TGG | + | chr2_1:69535465-69535484 | Msa0221020:three_prime_UTR | 45.0% | |
!!! | GTGTGTCAGTTTTGAGGTCT+TGG | + | chr2_1:69535510-69535529 | Msa0221020:three_prime_UTR | 45.0% |
!!! | ATTTTACTAAATTTTATTTA+GGG | - | chr2_1:69531555-69531574 | None:intergenic | 5.0% |
!!! | AATTTTACTAAATTTTATTT+AGG | - | chr2_1:69531556-69531575 | None:intergenic | 5.0% |
!! | AAATATACATATTTATTAAA+GGG | + | chr2_1:69531705-69531724 | Msa0221020:five_prime_UTR | 5.0% |
CCCTCTAACATTCCCTTGTG+TGG | + | chr2_1:69531675-69531694 | Msa0221020:five_prime_UTR | 50.0% | |
! | GGCCAACTTGGTGACATGTT+TGG | - | chr2_1:69531952-69531971 | None:intergenic | 50.0% |
GAATCAGAACCCTTCATGGG+TGG | + | chr2_1:69532050-69532069 | Msa0221020:CDS | 50.0% | |
GGAACTCATCCACCCATGAA+GGG | - | chr2_1:69532062-69532081 | None:intergenic | 50.0% | |
AGGAACTCATCCACCCATGA+AGG | - | chr2_1:69532063-69532082 | None:intergenic | 50.0% | |
CCCCGACAATCATCAAGCAT+TGG | - | chr2_1:69532156-69532175 | None:intergenic | 50.0% | |
GATTGTCGGGGTAAACACGA+TGG | + | chr2_1:69532165-69532184 | Msa0221020:CDS | 50.0% | |
GGGTTCGATGAAGACAACGT+TGG | - | chr2_1:69532282-69532301 | None:intergenic | 50.0% | |
CATGGTCTCATTAGGACCAC+AGG | - | chr2_1:69533416-69533435 | None:intergenic | 50.0% | |
!! | GGAGCTAACTACTTTGAGGC+AGG | - | chr2_1:69534137-69534156 | None:intergenic | 50.0% |
!! | CTCATCAAGAGGCACTGAAG+AGG | + | chr2_1:69534381-69534400 | Msa0221020:CDS | 50.0% |
TGACCGACTGACTATGCACA+CGG | - | chr2_1:69534751-69534770 | None:intergenic | 50.0% | |
CATAGTCAGTCGGTCACATC+TGG | + | chr2_1:69534755-69534774 | Msa0221020:intron | 50.0% | |
TCACACGTTATTGGGTGGTG+AGG | + | chr2_1:69535094-69535113 | Msa0221020:intron | 50.0% | |
GGGAAACACATGTGCATCAG+TGG | + | chr2_1:69535233-69535252 | Msa0221020:intron | 50.0% | |
! | TCCTCGACTTTTCCTCGGCA+AGG | + | chr2_1:69532079-69532098 | Msa0221020:CDS | 55.0% |
CAGCACAAAGGTCACGTGTG+AGG | + | chr2_1:69532962-69532981 | Msa0221020:CDS | 55.0% | |
GCCTTGCCGAGGAAAAGTCG+AGG | - | chr2_1:69532083-69532102 | None:intergenic | 60.0% | |
! | GACTTTTCCTCGGCAAGGCG+AGG | + | chr2_1:69532084-69532103 | Msa0221020:CDS | 60.0% |
! | CAAGGCGAGGCGCTCATAGA+AGG | + | chr2_1:69532097-69532116 | Msa0221020:CDS | 60.0% |
! | GCGAGGCGCTCATAGAAGGT+CGG | + | chr2_1:69532101-69532120 | Msa0221020:CDS | 60.0% |
ATGAGCGCCTCGCCTTGCCG+AGG | - | chr2_1:69532094-69532113 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 69531517 | 69535658 | 69531517 | ID=Msa0221020;Name=Msa0221020 |
chr2_1 | mRNA | 69531517 | 69535658 | 69531517 | ID=Msa0221020-mRNA-1;Parent=Msa0221020;Name=Msa0221020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=408|1|1|1|0.8|0.66|6|203|352 |
chr2_1 | exon | 69531517 | 69532538 | 69531517 | ID=Msa0221020-mRNA-1:exon:19684;Parent=Msa0221020-mRNA-1 |
chr2_1 | exon | 69532942 | 69533032 | 69532942 | ID=Msa0221020-mRNA-1:exon:19685;Parent=Msa0221020-mRNA-1 |
chr2_1 | exon | 69533197 | 69533323 | 69533197 | ID=Msa0221020-mRNA-1:exon:19686;Parent=Msa0221020-mRNA-1 |
chr2_1 | exon | 69534381 | 69534538 | 69534381 | ID=Msa0221020-mRNA-1:exon:19687;Parent=Msa0221020-mRNA-1 |
chr2_1 | exon | 69535234 | 69535303 | 69535234 | ID=Msa0221020-mRNA-1:exon:19688;Parent=Msa0221020-mRNA-1 |
chr2_1 | exon | 69535457 | 69535658 | 69535457 | ID=Msa0221020-mRNA-1:exon:19689;Parent=Msa0221020-mRNA-1 |
chr2_1 | five_prime_UTR | 69531517 | 69531924 | 69531517 | ID=Msa0221020-mRNA-1:five_prime_utr;Parent=Msa0221020-mRNA-1 |
chr2_1 | CDS | 69531925 | 69532538 | 69531925 | ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1 |
chr2_1 | CDS | 69532942 | 69533032 | 69532942 | ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1 |
chr2_1 | CDS | 69533197 | 69533323 | 69533197 | ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1 |
chr2_1 | CDS | 69534381 | 69534538 | 69534381 | ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1 |
chr2_1 | CDS | 69535234 | 69535302 | 69535234 | ID=Msa0221020-mRNA-1:cds;Parent=Msa0221020-mRNA-1 |
chr2_1 | three_prime_UTR | 69535303 | 69535303 | 69535303 | ID=Msa0221020-mRNA-1:three_prime_utr;Parent=Msa0221020-mRNA-1 |
chr2_1 | three_prime_UTR | 69535457 | 69535658 | 69535457 | ID=Msa0221020-mRNA-1:three_prime_utr;Parent=Msa0221020-mRNA-1 |
Gene Sequence |
Protein sequence |