AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0262470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262470 MtrunA17_Chr2g0325131 95.739 352 7 2 1 352 1 344 0.0 678
Msa0262470 MtrunA17_Chr4g0040891 62.428 346 95 13 1 330 1 327 2.47e-123 358
Msa0262470 MtrunA17_Chr2g0316551 53.560 323 117 10 1 302 1 311 1.08e-94 285
Msa0262470 MtrunA17_Chr8g0380611 35.094 265 145 8 44 294 73 324 5.39e-28 112
Msa0262470 MtrunA17_Chr5g0432701 48.936 94 48 0 198 291 158 251 2.96e-20 90.5
Msa0262470 MtrunA17_Chr4g0036071 48.454 97 50 0 197 293 358 454 4.79e-20 91.3
Msa0262470 MtrunA17_Chr2g0329551 44.737 114 58 2 197 310 219 327 2.71e-19 88.6
Msa0262470 MtrunA17_Chr3g0107491 46.237 93 50 0 199 291 177 269 1.79e-18 85.5
Msa0262470 MtrunA17_Chr6g0463571 47.368 95 50 0 197 291 149 243 1.59e-17 82.0
Msa0262470 MtrunA17_Chr3g0128781 45.745 94 51 0 198 291 107 200 3.58e-17 81.3
Msa0262470 MtrunA17_Chr1g0156051 48.980 98 46 2 198 293 386 481 1.41e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0262470 AT3G58120.1 58.841 345 110 10 1 330 1 328 9.77e-119 346
Msa0262470 AT2G42380.2 57.101 345 107 8 1 330 1 319 2.01e-113 333
Msa0262470 AT2G42380.1 53.623 345 108 9 1 330 1 308 5.17e-102 303
Msa0262470 AT3G58120.2 58.020 293 96 8 1 278 1 281 2.96e-100 298
Msa0262470 AT2G42380.5 56.701 291 87 7 1 278 1 265 6.01e-93 278
Msa0262470 AT2G42380.3 49.206 252 89 7 1 239 1 226 1.22e-61 197
Msa0262470 AT2G42380.4 49.206 252 89 7 1 239 1 226 1.22e-61 197
Msa0262470 AT1G58110.1 30.448 335 161 11 2 294 20 324 2.73e-27 110
Msa0262470 AT1G58110.2 30.448 335 161 11 2 294 20 324 2.73e-27 110
Msa0262470 AT1G43700.1 46.491 114 56 1 185 293 175 288 8.01e-21 92.4
Msa0262470 AT4G38900.2 48.421 95 49 0 197 291 392 486 7.75e-20 90.9
Msa0262470 AT4G38900.3 48.421 95 49 0 197 291 392 486 7.75e-20 90.9
Msa0262470 AT5G04840.1 29.766 299 158 8 2 291 5 260 3.67e-19 87.0
Msa0262470 AT2G40620.1 46.316 95 51 0 197 291 146 240 5.34e-19 87.4
Msa0262470 AT1G06850.1 48.387 93 48 0 199 291 148 240 1.66e-18 85.9
Msa0262470 AT1G06070.1 46.316 95 51 0 197 291 208 302 1.73e-18 86.7
Msa0262470 AT2G21230.4 36.486 148 89 2 197 340 368 514 4.66e-18 85.5
Msa0262470 AT2G21230.1 36.486 148 89 2 197 340 368 514 4.66e-18 85.5
Msa0262470 AT2G31370.5 31.174 247 143 5 62 291 57 293 7.25e-18 84.3
Msa0262470 AT2G31370.2 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT2G31370.4 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT2G31370.1 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT2G31370.7 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT2G31370.3 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT2G31370.6 31.174 247 143 5 62 291 57 293 8.45e-18 84.3
Msa0262470 AT4G38900.1 45.545 101 49 1 197 291 392 492 1.25e-17 84.3
Msa0262470 AT1G35490.2 28.226 248 133 7 46 291 54 258 7.75e-17 80.5
Msa0262470 AT1G35490.1 28.226 248 133 7 46 291 54 258 7.75e-17 80.5
Msa0262470 AT5G04840.2 29.371 286 150 8 2 278 5 247 5.18e-16 77.0
Msa0262470 AT2G21230.3 34.194 155 91 3 197 341 368 521 8.88e-16 79.0
Msa0262470 AT2G21230.2 46.341 82 44 0 197 278 368 449 4.10e-14 73.6
Msa0262470 AT5G07160.1 41.237 97 57 0 195 291 44 140 2.63e-12 64.3
Msa0262470 AT1G06850.2 68.889 45 14 0 198 242 147 191 5.67e-11 62.4
Msa0262470 AT2G12900.1 31.132 106 73 0 190 295 107 212 9.86e-11 62.0

Find 77 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCCCTTGCGTGGTTTC+TGG 0.119768 2_2:+61394839 Msa0262470:five_prime_UTR
GAAATATACATATTTATTAA+AGG 0.205907 2_2:+61394861 Msa0262470:five_prime_UTR
GGTGACATGTTTGGGATCTT+AGG 0.259620 2_2:-61395097 None:intergenic
GTTTGTAGTGACAATGTTAT+TGG 0.263094 2_2:-61395176 None:intergenic
TTTGAGGTCTTGGATTTAAT+TGG 0.274873 2_2:+61398861 Msa0262470:three_prime_UTR
GCATTAGAATCTTGGCAAAT+AGG 0.275046 2_2:+61396087 Msa0262470:intron
CCTCAAATTTGTTGTTGTTA+AGG 0.275676 2_2:-61395012 None:intergenic
GAGAAGAAGGAAAATGATTT+AGG 0.296863 2_2:+61395520 Msa0262470:CDS
GCCAACTTGGTGACATGTTT+GGG 0.333815 2_2:-61395105 None:intergenic
TTATTAAAGGGTTGTGTTAG+AGG 0.345247 2_2:+61394874 Msa0262470:five_prime_UTR
CATTGGCTTTCTACCTCATC+AGG 0.351950 2_2:-61395586 None:intergenic
AAATATACATATTTATTAAA+GGG 0.356758 2_2:+61394862 Msa0262470:five_prime_UTR
AAATTGCGCTGTATATATAA+TGG 0.357460 2_2:+61398969 Msa0262470:three_prime_UTR
GGTCTTGGATTTAATTGGTT+TGG 0.375520 2_2:+61398866 Msa0262470:three_prime_UTR
GCGTAGTGTAACTTCATTGC+AGG 0.377738 2_2:+61396163 Msa0262470:CDS
GGCCAACTTGGTGACATGTT+TGG 0.381627 2_2:-61395106 None:intergenic
CCATCTTCTTGAGGTTCTGA+TGG 0.385345 2_2:-61397582 None:intergenic
GACAATGTTATTGGTTGAAA+TGG 0.385822 2_2:-61395167 None:intergenic
TCTGTTTGAGAATCACATAT+TGG 0.388915 2_2:-61397646 None:intergenic
GAAGAATAAACAAGAGAAGA+AGG 0.396694 2_2:+61395507 Msa0262470:CDS
ACCAATGCTTGATGATTGTC+GGG 0.399558 2_2:+61395309 Msa0262470:CDS
AAGAAGATGGAAAATGCTAA+TGG 0.406779 2_2:+61397595 Msa0262470:CDS
CCTTAACAACAACAAATTTG+AGG 0.410672 2_2:+61395012 Msa0262470:five_prime_UTR
ACCACGCAAGGGAATGTTAG+AGG 0.427245 2_2:-61394833 None:intergenic
ATCAGAATCAGAACCCTTCA+TGG 0.433073 2_2:+61395203 Msa0262470:CDS
GGAGATAGAAAGATTAAGAC+AGG 0.441141 2_2:+61397552 Msa0262470:CDS
GCATTGTTGTTGTTACTTTG+AGG 0.444336 2_2:-61395628 None:intergenic
TACAAAACTATATAACAAAC+AGG 0.456508 2_2:-61395047 None:intergenic
CACCAATGCTTGATGATTGT+CGG 0.462711 2_2:+61395308 Msa0262470:CDS
CCATCAGAACCTCAAGAAGA+TGG 0.469615 2_2:+61397582 Msa0262470:CDS
ATTAACATACAATGTATGAA+TGG 0.472844 2_2:-61394923 None:intergenic
AATGTGGAGTGTGATGGATA+TGG 0.473304 2_2:+61398812 Msa0262470:three_prime_UTR
CATCAGTGGCATCAAAAGAA+AGG 0.482392 2_2:+61398589 Msa0262470:CDS
TTCTGATCTGAAGGACTCGA+AGG 0.485897 2_2:-61395457 None:intergenic
GGTAGAAAGCCAATGCAAAC+AGG 0.488493 2_2:+61395594 Msa0262470:CDS
TTAACATACAATGTATGAAT+GGG 0.503238 2_2:-61394922 None:intergenic
ATGTTTAGTGATGAAATATC+TGG 0.505923 2_2:+61395397 Msa0262470:CDS
TGAAAAGCTTGTCTTGTGCA+AGG 0.507196 2_2:-61396447 None:intergenic
TTATTGGTTGAAATGGATGT+TGG 0.515770 2_2:-61395160 None:intergenic
TTGACAAAATTCTGATCTGA+AGG 0.516864 2_2:-61395466 None:intergenic
CCCTCTAACATTCCCTTGCG+TGG 0.524932 2_2:+61394832 Msa0262470:five_prime_UTR
CCCCGACAATCATCAAGCAT+TGG 0.530465 2_2:-61395310 None:intergenic
TTTAGGAGAGATGAAGAAAG+AGG 0.538946 2_2:+61395537 Msa0262470:CDS
AGGAACTCATCCACCCATGA+AGG 0.539506 2_2:-61395217 None:intergenic
GAAAAGCTTGTCTTGTGCAA+GGG 0.539760 2_2:-61396446 None:intergenic
ATATGGATAAAATGAAAGAA+AGG 0.562865 2_2:+61398829 Msa0262470:three_prime_UTR
CTGATCCAAAGAGAGTCAAA+AGG 0.572655 2_2:+61395674 Msa0262470:CDS
ATCAGTGGCATCAAAAGAAA+GGG 0.574757 2_2:+61398590 Msa0262470:CDS
TTCGATGAAGACAACGTTGG+TGG 0.575587 2_2:-61395433 None:intergenic
TCCCAAACATGTCACCAAGT+TGG 0.580152 2_2:+61395104 Msa0262470:CDS
GGGAAACACATGTGCATCAG+TGG 0.585339 2_2:+61398575 Msa0262470:intron
AGATATTTCATCACTAAACA+TGG 0.586033 2_2:-61395395 None:intergenic
AAAACAAAGACAATGGCTTG+TGG 0.588542 2_2:+61398789 Msa0262470:intron
GACATGTTTGGGATCTTAGG+AGG 0.588767 2_2:-61395094 None:intergenic
TTGTGGAATGTGGAGTGTGA+TGG 0.590221 2_2:+61398806 Msa0262470:three_prime_UTR
CTCATCAAGAGGCATTGAAG+AGG 0.590362 2_2:+61397530 Msa0262470:CDS
CAAGGCGAGGTGCTCATCGA+AGG 0.594155 2_2:+61395254 Msa0262470:CDS
TCATCAAGAGGCATTGAAGA+GGG 0.599782 2_2:+61397531 Msa0262470:CDS
GAATCAGAACCCTTCATGGG+TGG 0.607660 2_2:+61395207 Msa0262470:CDS
ATTGAAATATGAACCTGATG+AGG 0.608223 2_2:+61395573 Msa0262470:CDS
TCAGAATCAGAACCCTTCAT+GGG 0.609308 2_2:+61395204 Msa0262470:CDS
TCTGATCTGAAGGACTCGAA+GGG 0.610267 2_2:-61395456 None:intergenic
TTTACATGCAGCTCATCAAG+AGG 0.610732 2_2:+61397519 Msa0262470:intron
ATGAGCACCTCGCCTTGCCG+AGG 0.614435 2_2:-61395248 None:intergenic
AGACAATGGCTTGTGGAATG+TGG 0.619824 2_2:+61398796 Msa0262470:intron
GGAACTCATCCACCCATGAA+GGG 0.626852 2_2:-61395216 None:intergenic
AGTGGCATCAAAAGAAAGGG+TGG 0.627047 2_2:+61398593 Msa0262470:CDS
CCACGCAAGGGAATGTTAGA+GGG 0.632166 2_2:-61394832 None:intergenic
CAAATAGGCAATCAGCACAA+AGG 0.647617 2_2:+61396102 Msa0262470:CDS
GCGAGGTGCTCATCGAAGGT+CGG 0.657525 2_2:+61395258 Msa0262470:CDS
TATTTCCAGAAACCACGCAA+GGG 0.658603 2_2:-61394844 None:intergenic
CAGCACAAAGGTCACGTGTG+AGG 0.661809 2_2:+61396114 Msa0262470:CDS
ATATTTCCAGAAACCACGCA+AGG 0.670368 2_2:-61394845 None:intergenic
GCCTTGCCGAGGAAAAGTCG+AGG 0.688307 2_2:-61395237 None:intergenic
GATTGTCGGGGTAAACACGA+TGG 0.708511 2_2:+61395322 Msa0262470:CDS
GGGTTCGATGAAGACAACGT+TGG 0.721008 2_2:-61395436 None:intergenic
CCAATGCTTGATGATTGTCG+GGG 0.745183 2_2:+61395310 Msa0262470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTTTTAATTAACT+TGG + chr2_2:61394802-61394821 Msa0262470:five_prime_UTR 10.0%
!! GAAATATACATATTTATTAA+AGG + chr2_2:61394861-61394880 Msa0262470:five_prime_UTR 10.0%
!!! GTTTTATTAATAATAATTAC+TGG + chr2_2:61397385-61397404 Msa0262470:intron 10.0%
!! TCTATATAGAAAAAATTAAA+TGG + chr2_2:61398665-61398684 Msa0262470:intron 10.0%
!! AGATAAAAATTAAAACATGT+AGG + chr2_2:61395724-61395743 Msa0262470:intron 15.0%
!! TACTAATTAGTGAATTTATA+TGG + chr2_2:61396524-61396543 Msa0262470:intron 15.0%
!! ATGAAATGACAAAATAAAAA+TGG + chr2_2:61396605-61396624 Msa0262470:intron 15.0%
!! AGAATTAATATCAATATTGA+AGG + chr2_2:61397049-61397068 Msa0262470:intron 15.0%
!! ATATTTGAAAAATACTTAGT+TGG - chr2_2:61397250-61397269 None:intergenic 15.0%
!! TTTAAATCTGATAAGTAAAA+AGG - chr2_2:61397307-61397326 None:intergenic 15.0%
!! AATTAATGAAAAACAATGAT+TGG - chr2_2:61397411-61397430 None:intergenic 15.0%
!! CTAAATAGTATTAACTATTA+AGG - chr2_2:61397443-61397462 None:intergenic 15.0%
!!! TTGCAGAATTTTTTTTTATA+AGG + chr2_2:61397796-61397815 Msa0262470:intron 15.0%
!! AAATATAAATGCATAGTATT+TGG - chr2_2:61398491-61398510 None:intergenic 15.0%
!! ATATAGAAAAAATTAAATGG+AGG + chr2_2:61398668-61398687 Msa0262470:intron 15.0%
!! TTAACATACAATGTATGAAT+GGG - chr2_2:61394925-61394944 None:intergenic 20.0%
!! ATTAACATACAATGTATGAA+TGG - chr2_2:61394926-61394945 None:intergenic 20.0%
!! TACAAAACTATATAACAAAC+AGG - chr2_2:61395050-61395069 None:intergenic 20.0%
!!! CATAATATTTTTTTGGTGTT+TGG - chr2_2:61395140-61395159 None:intergenic 20.0%
!!! ATGTTGGCATAATATTTTTT+TGG - chr2_2:61395147-61395166 None:intergenic 20.0%
!! AATTGAAATATTGTTGATCT+TGG + chr2_2:61395971-61395990 Msa0262470:intron 20.0%
!! AAATTTAATAAGAGTGAAAC+AGG + chr2_2:61396702-61396721 Msa0262470:intron 20.0%
!! TATATTAACTACTTTGTGAT+GGG - chr2_2:61396818-61396837 None:intergenic 20.0%
!! AAGTATTTGTACATTCTATT+TGG - chr2_2:61397223-61397242 None:intergenic 20.0%
!!! GTAAAATATCCATTTTGAAA+AGG + chr2_2:61398200-61398219 Msa0262470:intron 20.0%
!!! ATTTAGTTTCCTTTTCAAAA+TGG - chr2_2:61398212-61398231 None:intergenic 20.0%
!! AATATAAATGTACAGTGTTT+AGG + chr2_2:61398369-61398388 Msa0262470:intron 20.0%
!!! TTTATCTTTTTCAATCCATT+TGG + chr2_2:61398765-61398784 Msa0262470:intron 20.0%
!! ATATGGATAAAATGAAAGAA+AGG + chr2_2:61398829-61398848 Msa0262470:three_prime_UTR 20.0%
! AGATATTTCATCACTAAACA+TGG - chr2_2:61395398-61395417 None:intergenic 25.0%
! ATGTTTAGTGATGAAATATC+TGG + chr2_2:61395397-61395416 Msa0262470:CDS 25.0%
! ACTAAAAAATTGTGTCATGT+GGG - chr2_2:61395865-61395884 None:intergenic 25.0%
! TACTAAAAAATTGTGTCATG+TGG - chr2_2:61395866-61395885 None:intergenic 25.0%
!!! GTTTTTTTGCATTAGAATCT+TGG + chr2_2:61396079-61396098 Msa0262470:intron 25.0%
! ATTTGCAGTACTATAATATC+TGG + chr2_2:61396233-61396252 Msa0262470:intron 25.0%
! ATATATATTTGGACAGTAGA+AGG - chr2_2:61396324-61396343 None:intergenic 25.0%
! ACTGTCCAAATATATATTGA+AGG + chr2_2:61396327-61396346 Msa0262470:intron 25.0%
! TTCAGCCTTCAATATATATT+TGG - chr2_2:61396335-61396354 None:intergenic 25.0%
! ATATTAACTACTTTGTGATG+GGG - chr2_2:61396817-61396836 None:intergenic 25.0%
! GTATATTAACTACTTTGTGA+TGG - chr2_2:61396819-61396838 None:intergenic 25.0%
!!! CTCTTGAAATTTTGATACAT+AGG - chr2_2:61396912-61396931 None:intergenic 25.0%
! GTTAGTCAAAATAGTTTCTT+AGG + chr2_2:61396950-61396969 Msa0262470:intron 25.0%
!! AAGGAAAATGAGAGATTTTA+AGG + chr2_2:61397815-61397834 Msa0262470:intron 25.0%
!!! AAATGAGAGATTTTAAGGAA+AGG + chr2_2:61397820-61397839 Msa0262470:intron 25.0%
!!! AATGAGAGATTTTAAGGAAA+GGG + chr2_2:61397821-61397840 Msa0262470:intron 25.0%
! AAAATAGCGAACTTAAAACT+TGG + chr2_2:61397950-61397969 Msa0262470:intron 25.0%
! TAGTATTACTAGTACAAGTA+GGG + chr2_2:61398271-61398290 Msa0262470:intron 25.0%
!!! GATTTAGTCTTTTGAGAAAA+AGG + chr2_2:61398447-61398466 Msa0262470:intron 25.0%
!!! ATTGTCTTTGTTTTTCCAAA+TGG - chr2_2:61398783-61398802 None:intergenic 25.0%
! ATTTGGAAAAACAAAGACAA+TGG + chr2_2:61398782-61398801 Msa0262470:intron 25.0%
! AAATTGCGCTGTATATATAA+TGG + chr2_2:61398969-61398988 Msa0262470:three_prime_UTR 25.0%
TTATTAAAGGGTTGTGTTAG+AGG + chr2_2:61394874-61394893 Msa0262470:five_prime_UTR 30.0%
!! CCTCAAATTTGTTGTTGTTA+AGG - chr2_2:61395015-61395034 None:intergenic 30.0%
CCTTAACAACAACAAATTTG+AGG + chr2_2:61395012-61395031 Msa0262470:five_prime_UTR 30.0%
! TTTTGTACATCTCTCTCAAA+TGG + chr2_2:61395063-61395082 Msa0262470:exon 30.0%
!!! TTTTGGTGTTTGGAAAAATC+TGG - chr2_2:61395130-61395149 None:intergenic 30.0%
! TTATTGGTTGAAATGGATGT+TGG - chr2_2:61395163-61395182 None:intergenic 30.0%
! GACAATGTTATTGGTTGAAA+TGG - chr2_2:61395170-61395189 None:intergenic 30.0%
GTTTGTAGTGACAATGTTAT+TGG - chr2_2:61395179-61395198 None:intergenic 30.0%
TTGACAAAATTCTGATCTGA+AGG - chr2_2:61395469-61395488 None:intergenic 30.0%
GAAGAATAAACAAGAGAAGA+AGG + chr2_2:61395507-61395526 Msa0262470:CDS 30.0%
GAGAAGAAGGAAAATGATTT+AGG + chr2_2:61395520-61395539 Msa0262470:CDS 30.0%
ATTGAAATATGAACCTGATG+AGG + chr2_2:61395573-61395592 Msa0262470:CDS 30.0%
!! AATTACCTTTTGACTCTCTT+TGG - chr2_2:61395682-61395701 None:intergenic 30.0%
CAGTGCTATATATAGCTTAT+TGG - chr2_2:61396641-61396660 None:intergenic 30.0%
TATTAACTACTTTGTGATGG+GGG - chr2_2:61396816-61396835 None:intergenic 30.0%
ATTATTGTGCTTACTCGTTA+GGG + chr2_2:61397072-61397091 Msa0262470:intron 30.0%
TACTATTTAGACACATAGCT+AGG + chr2_2:61397453-61397472 Msa0262470:intron 30.0%
ACTATTTAGACACATAGCTA+GGG + chr2_2:61397454-61397473 Msa0262470:intron 30.0%
AAGAAGATGGAAAATGCTAA+TGG + chr2_2:61397595-61397614 Msa0262470:CDS 30.0%
TCTGTTTGAGAATCACATAT+TGG - chr2_2:61397649-61397668 None:intergenic 30.0%
AAGGAAAGGGAAAATAAATG+AGG + chr2_2:61397834-61397853 Msa0262470:intron 30.0%
AGGAAAGGGAAAATAAATGA+GGG + chr2_2:61397835-61397854 Msa0262470:intron 30.0%
ATTGTTTAATCTTACTCGCA+CGG + chr2_2:61397973-61397992 Msa0262470:intron 30.0%
TAGATATGACTGACAACATA+TGG + chr2_2:61397998-61398017 Msa0262470:intron 30.0%
ATAATCGACTGTAAATTCAG+CGG - chr2_2:61398127-61398146 None:intergenic 30.0%
!!! ACTTGTTTTTATGCCACATT+TGG - chr2_2:61398180-61398199 None:intergenic 30.0%
GTAGTATTACTAGTACAAGT+AGG + chr2_2:61398270-61398289 Msa0262470:intron 30.0%
AAAGAAGAGAAAGTCTATCA+TGG + chr2_2:61398341-61398360 Msa0262470:intron 30.0%
AAGAATGCCTCTTAAAAGAA+AGG + chr2_2:61398521-61398540 Msa0262470:intron 30.0%
AGAATGCCTCTTAAAAGAAA+GGG + chr2_2:61398522-61398541 Msa0262470:intron 30.0%
! TTTGAGGTCTTGGATTTAAT+TGG + chr2_2:61398861-61398880 Msa0262470:three_prime_UTR 30.0%
TTTAGGAGAGATGAAGAAAG+AGG + chr2_2:61395537-61395556 Msa0262470:CDS 35.0%
! GTGAATTTTCCTGTTTGCAT+TGG - chr2_2:61395606-61395625 None:intergenic 35.0%
!! GCATTGTTGTTGTTACTTTG+AGG - chr2_2:61395631-61395650 None:intergenic 35.0%
GAATCAGTTGCAAAACTCAA+AGG - chr2_2:61396057-61396076 None:intergenic 35.0%
!! TTGAGTTTTGCAACTGATTC+TGG + chr2_2:61396057-61396076 Msa0262470:intron 35.0%
GCATTAGAATCTTGGCAAAT+AGG + chr2_2:61396087-61396106 Msa0262470:intron 35.0%
! ATCTCCAAGAGTTGCATTTT+TGG + chr2_2:61396366-61396385 Msa0262470:CDS 35.0%
TGATCCAAAAATGCAACTCT+TGG - chr2_2:61396373-61396392 None:intergenic 35.0%
! CAAGACAAGCTTTTCAAAGA+TGG + chr2_2:61396454-61396473 Msa0262470:CDS 35.0%
!! ATTTCATGCTTGACTTGTCA+TGG - chr2_2:61396592-61396611 None:intergenic 35.0%
AGTCTACTAACATTTGAGCT+CGG + chr2_2:61396845-61396864 Msa0262470:intron 35.0%
GATTATTGTGCTTACTCGTT+AGG + chr2_2:61397071-61397090 Msa0262470:intron 35.0%
TATGTTTGTGTGCGTTCAAA+TGG - chr2_2:61397115-61397134 None:intergenic 35.0%
AAAAGGAGCTAACTACTTTG+AGG - chr2_2:61397290-61397309 None:intergenic 35.0%
GGAGATAGAAAGATTAAGAC+AGG + chr2_2:61397552-61397571 Msa0262470:CDS 35.0%
! TAGCATTTTCCATCTTCTTG+AGG - chr2_2:61397594-61397613 None:intergenic 35.0%
!!! ACATATTGGCTTTTGTGATG+GGG - chr2_2:61397635-61397654 None:intergenic 35.0%
!!! CACATATTGGCTTTTGTGAT+GGG - chr2_2:61397636-61397655 None:intergenic 35.0%
!!! TCACATATTGGCTTTTGTGA+TGG - chr2_2:61397637-61397656 None:intergenic 35.0%
CACACGGTTACAATTACATA+AGG - chr2_2:61397886-61397905 None:intergenic 35.0%
AATAGAACATGAGTTGCATG+CGG - chr2_2:61398038-61398057 None:intergenic 35.0%
AGACCGTTCGATTAATCTAA+CGG + chr2_2:61398147-61398166 Msa0262470:intron 35.0%
AGACCGTTAGATTAATCGAA+CGG - chr2_2:61398153-61398172 None:intergenic 35.0%
TTTGAAGAGTCACACGTTAT+TGG + chr2_2:61398236-61398255 Msa0262470:intron 35.0%
TTGAAGAGTCACACGTTATT+GGG + chr2_2:61398237-61398256 Msa0262470:intron 35.0%
!!! TTTTAAGAGGCATTCTTGCA+TGG - chr2_2:61398518-61398537 None:intergenic 35.0%
ATCAGTGGCATCAAAAGAAA+GGG + chr2_2:61398590-61398609 Msa0262470:CDS 35.0%
AAAACAAAGACAATGGCTTG+TGG + chr2_2:61398789-61398808 Msa0262470:intron 35.0%
GGTCTTGGATTTAATTGGTT+TGG + chr2_2:61398866-61398885 Msa0262470:three_prime_UTR 35.0%
TATTTCCAGAAACCACGCAA+GGG - chr2_2:61394847-61394866 None:intergenic 40.0%
ATATTTCCAGAAACCACGCA+AGG - chr2_2:61394848-61394867 None:intergenic 40.0%
TTGGAAAAATCTGGCCAACT+TGG - chr2_2:61395121-61395140 None:intergenic 40.0%
ATCAGAATCAGAACCCTTCA+TGG + chr2_2:61395203-61395222 Msa0262470:CDS 40.0%
TCAGAATCAGAACCCTTCAT+GGG + chr2_2:61395204-61395223 Msa0262470:CDS 40.0%
! CACCAATGCTTGATGATTGT+CGG + chr2_2:61395308-61395327 Msa0262470:CDS 40.0%
! ACCAATGCTTGATGATTGTC+GGG + chr2_2:61395309-61395328 Msa0262470:CDS 40.0%
CTGATCCAAAGAGAGTCAAA+AGG + chr2_2:61395674-61395693 Msa0262470:CDS 40.0%
CAAATAGGCAATCAGCACAA+AGG + chr2_2:61396102-61396121 Msa0262470:CDS 40.0%
GAAAAGCTTGTCTTGTGCAA+GGG - chr2_2:61396449-61396468 None:intergenic 40.0%
TGAAAAGCTTGTCTTGTGCA+AGG - chr2_2:61396450-61396469 None:intergenic 40.0%
GTGAAAGAATATGTACCCTG+TGG + chr2_2:61396555-61396574 Msa0262470:intron 40.0%
! TGACTTGTCATGGTCTCATT+AGG - chr2_2:61396582-61396601 None:intergenic 40.0%
GCACTGTAGTTACTTGAAGT+TGG + chr2_2:61396655-61396674 Msa0262470:intron 40.0%
GTTGGTCAAGTATTCACTAG+TGG + chr2_2:61396673-61396692 Msa0262470:intron 40.0%
TGTGTGCAGTCTCATAACTA+TGG - chr2_2:61396729-61396748 None:intergenic 40.0%
GGGCACATGATCACATAAAT+AGG - chr2_2:61396796-61396815 None:intergenic 40.0%
GTCTACTAACATTTGAGCTC+GGG + chr2_2:61396846-61396865 Msa0262470:intron 40.0%
TTTACATGCAGCTCATCAAG+AGG + chr2_2:61397519-61397538 Msa0262470:intron 40.0%
!! TCATCAAGAGGCATTGAAGA+GGG + chr2_2:61397531-61397550 Msa0262470:CDS 40.0%
!! TTTTGTGATGGGGATGGTAA+GGG - chr2_2:61397625-61397644 None:intergenic 40.0%
GACTGACAACATATGGTTAG+AGG + chr2_2:61398005-61398024 Msa0262470:intron 40.0%
TAACGGTCTACAACCAAATG+TGG + chr2_2:61398164-61398183 Msa0262470:intron 40.0%
! AGTGGTCCCTTTCTTTTAAG+AGG - chr2_2:61398531-61398550 None:intergenic 40.0%
CCAATCATGCAAACTTTGAG+TGG - chr2_2:61398549-61398568 None:intergenic 40.0%
CCACTCAAAGTTTGCATGAT+TGG + chr2_2:61398546-61398565 Msa0262470:intron 40.0%
AGTTTGCATGATTGGAATGC+AGG + chr2_2:61398554-61398573 Msa0262470:intron 40.0%
GTTTGCATGATTGGAATGCA+GGG + chr2_2:61398555-61398574 Msa0262470:intron 40.0%
CATCAGTGGCATCAAAAGAA+AGG + chr2_2:61398589-61398608 Msa0262470:CDS 40.0%
!! AATGTGGAGTGTGATGGATA+TGG + chr2_2:61398812-61398831 Msa0262470:three_prime_UTR 40.0%
!! AGAAAGGTGTGTCAGTTTTG+AGG + chr2_2:61398845-61398864 Msa0262470:three_prime_UTR 40.0%
! GACATGTTTGGGATCTTAGG+AGG - chr2_2:61395097-61395116 None:intergenic 45.0%
! GGTGACATGTTTGGGATCTT+AGG - chr2_2:61395100-61395119 None:intergenic 45.0%
TCCCAAACATGTCACCAAGT+TGG + chr2_2:61395104-61395123 Msa0262470:CDS 45.0%
! GCCAACTTGGTGACATGTTT+GGG - chr2_2:61395108-61395127 None:intergenic 45.0%
! TGAGTTCCTCGACTTTTCCT+CGG + chr2_2:61395231-61395250 Msa0262470:CDS 45.0%
! CCAATGCTTGATGATTGTCG+GGG + chr2_2:61395310-61395329 Msa0262470:CDS 45.0%
TTCGATGAAGACAACGTTGG+TGG - chr2_2:61395436-61395455 None:intergenic 45.0%
TCTGATCTGAAGGACTCGAA+GGG - chr2_2:61395459-61395478 None:intergenic 45.0%
TTCTGATCTGAAGGACTCGA+AGG - chr2_2:61395460-61395479 None:intergenic 45.0%
!! CATTGGCTTTCTACCTCATC+AGG - chr2_2:61395589-61395608 None:intergenic 45.0%
GGTAGAAAGCCAATGCAAAC+AGG + chr2_2:61395594-61395613 Msa0262470:CDS 45.0%
GCGTAGTGTAACTTCATTGC+AGG + chr2_2:61396163-61396182 Msa0262470:CDS 45.0%
ATGGTCTCATTAGGACCACA+GGG - chr2_2:61396573-61396592 None:intergenic 45.0%
!! CTCATCAAGAGGCATTGAAG+AGG + chr2_2:61397530-61397549 Msa0262470:CDS 45.0%
! CCATCTTCTTGAGGTTCTGA+TGG - chr2_2:61397585-61397604 None:intergenic 45.0%
CCATCAGAACCTCAAGAAGA+TGG + chr2_2:61397582-61397601 Msa0262470:CDS 45.0%
!! CTTTTGTGATGGGGATGGTA+AGG - chr2_2:61397626-61397645 None:intergenic 45.0%
!!! ATTGGCTTTTGTGATGGGGA+TGG - chr2_2:61397631-61397650 None:intergenic 45.0%
TAACCGTGTGCATAGTCAGT+CGG + chr2_2:61397896-61397915 Msa0262470:intron 45.0%
AAGAGTCACACGTTATTGGG+TGG + chr2_2:61398240-61398259 Msa0262470:intron 45.0%
AGTGGCATCAAAAGAAAGGG+TGG + chr2_2:61398593-61398612 Msa0262470:CDS 45.0%
! AGACAATGGCTTGTGGAATG+TGG + chr2_2:61398796-61398815 Msa0262470:intron 45.0%
TTGTGGAATGTGGAGTGTGA+TGG + chr2_2:61398806-61398825 Msa0262470:three_prime_UTR 45.0%
!!! GTGTGTCAGTTTTGAGGTCT+TGG + chr2_2:61398851-61398870 Msa0262470:three_prime_UTR 45.0%
!! TAAAAAAAAAAAATGTTAAA+GGG - chr2_2:61394674-61394693 None:intergenic 5.0%
!! ATAAAAAAAAAAAATGTTAA+AGG - chr2_2:61394675-61394694 None:intergenic 5.0%
!!! TTAACATTTTTTTTTTTTAT+AGG + chr2_2:61394675-61394694 Msa0262470:five_prime_UTR 5.0%
!!! ATTTTACTAAATTTTATTTA+GGG - chr2_2:61394712-61394731 None:intergenic 5.0%
!!! AATTTTACTAAATTTTATTT+AGG - chr2_2:61394713-61394732 None:intergenic 5.0%
!! AAATATACATATTTATTAAA+GGG + chr2_2:61394862-61394881 Msa0262470:five_prime_UTR 5.0%
CCACGCAAGGGAATGTTAGA+GGG - chr2_2:61394835-61394854 None:intergenic 50.0%
ACCACGCAAGGGAATGTTAG+AGG - chr2_2:61394836-61394855 None:intergenic 50.0%
ACATTCCCTTGCGTGGTTTC+TGG + chr2_2:61394839-61394858 Msa0262470:five_prime_UTR 50.0%
! GGCCAACTTGGTGACATGTT+TGG - chr2_2:61395109-61395128 None:intergenic 50.0%
GAATCAGAACCCTTCATGGG+TGG + chr2_2:61395207-61395226 Msa0262470:CDS 50.0%
GGAACTCATCCACCCATGAA+GGG - chr2_2:61395219-61395238 None:intergenic 50.0%
AGGAACTCATCCACCCATGA+AGG - chr2_2:61395220-61395239 None:intergenic 50.0%
CCCCGACAATCATCAAGCAT+TGG - chr2_2:61395313-61395332 None:intergenic 50.0%
GATTGTCGGGGTAAACACGA+TGG + chr2_2:61395322-61395341 Msa0262470:CDS 50.0%
GGGTTCGATGAAGACAACGT+TGG - chr2_2:61395439-61395458 None:intergenic 50.0%
CATGGTCTCATTAGGACCAC+AGG - chr2_2:61396574-61396593 None:intergenic 50.0%
!! GGAGCTAACTACTTTGAGGC+AGG - chr2_2:61397286-61397305 None:intergenic 50.0%
TGACCGACTGACTATGCACA+CGG - chr2_2:61397902-61397921 None:intergenic 50.0%
TCACACGTTATTGGGTGGTG+AGG + chr2_2:61398245-61398264 Msa0262470:intron 50.0%
GGGAAACACATGTGCATCAG+TGG + chr2_2:61398575-61398594 Msa0262470:intron 50.0%
CCCTCTAACATTCCCTTGCG+TGG + chr2_2:61394832-61394851 Msa0262470:five_prime_UTR 55.0%
! TCCTCGACTTTTCCTCGGCA+AGG + chr2_2:61395236-61395255 Msa0262470:CDS 55.0%
CAGCACAAAGGTCACGTGTG+AGG + chr2_2:61396114-61396133 Msa0262470:CDS 55.0%
GCCTTGCCGAGGAAAAGTCG+AGG - chr2_2:61395240-61395259 None:intergenic 60.0%
! GACTTTTCCTCGGCAAGGCG+AGG + chr2_2:61395241-61395260 Msa0262470:CDS 60.0%
! CAAGGCGAGGTGCTCATCGA+AGG + chr2_2:61395254-61395273 Msa0262470:CDS 60.0%
! GCGAGGTGCTCATCGAAGGT+CGG + chr2_2:61395258-61395277 Msa0262470:CDS 60.0%
ATGAGCACCTCGCCTTGCCG+AGG - chr2_2:61395251-61395270 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 61394671 61398999 61394671 ID=Msa0262470;Name=Msa0262470
chr2_2 mRNA 61394671 61398999 61394671 ID=Msa0262470-mRNA-1;Parent=Msa0262470;Name=Msa0262470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=411|1|1|1|0.8|0.66|6|203|352
chr2_2 exon 61394671 61395695 61394671 ID=Msa0262470-mRNA-1:exon:18893;Parent=Msa0262470-mRNA-1
chr2_2 exon 61396094 61396184 61396094 ID=Msa0262470-mRNA-1:exon:18894;Parent=Msa0262470-mRNA-1
chr2_2 exon 61396349 61396475 61396349 ID=Msa0262470-mRNA-1:exon:18895;Parent=Msa0262470-mRNA-1
chr2_2 exon 61397530 61397687 61397530 ID=Msa0262470-mRNA-1:exon:18896;Parent=Msa0262470-mRNA-1
chr2_2 exon 61398576 61398645 61398576 ID=Msa0262470-mRNA-1:exon:18897;Parent=Msa0262470-mRNA-1
chr2_2 exon 61398798 61398999 61398798 ID=Msa0262470-mRNA-1:exon:18898;Parent=Msa0262470-mRNA-1
chr2_2 five_prime_UTR 61394671 61395081 61394671 ID=Msa0262470-mRNA-1:five_prime_utr;Parent=Msa0262470-mRNA-1
chr2_2 CDS 61395082 61395695 61395082 ID=Msa0262470-mRNA-1:cds;Parent=Msa0262470-mRNA-1
chr2_2 CDS 61396094 61396184 61396094 ID=Msa0262470-mRNA-1:cds;Parent=Msa0262470-mRNA-1
chr2_2 CDS 61396349 61396475 61396349 ID=Msa0262470-mRNA-1:cds;Parent=Msa0262470-mRNA-1
chr2_2 CDS 61397530 61397687 61397530 ID=Msa0262470-mRNA-1:cds;Parent=Msa0262470-mRNA-1
chr2_2 CDS 61398576 61398644 61398576 ID=Msa0262470-mRNA-1:cds;Parent=Msa0262470-mRNA-1
chr2_2 three_prime_UTR 61398645 61398645 61398645 ID=Msa0262470-mRNA-1:three_prime_utr;Parent=Msa0262470-mRNA-1
chr2_2 three_prime_UTR 61398798 61398999 61398798 ID=Msa0262470-mRNA-1:three_prime_utr;Parent=Msa0262470-mRNA-1
Gene Sequence

>Msa0262470

ATGGCACAATTACCTCCTAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTTTCCAAACACCAAAAAAATATTATGCCAACATCCATTTCAACCAATAACATTGTCACTACAAACAATTATCAGAATCAGAACCCTTCATGGGTGGATGAGTTCCTCGACTTTTCCTCGGCAAGGCGAGGTGCTCATCGAAGGTCGGTCAGCGATTCAGTCACATTCTTAGAAACACCAATGCTTGATGATTGTCGGGGTAAACACGATGGTAACAACAATGACAACGAGTTCGACAAGTTTGATGATGAACAATTTTTGTCCATGTTTAGTGATGAAATATCTGGTGTCAATAACATGCCACCAACGTTGTCTTCATCGAACCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGATAATGAGAAAGAGAAGAATAAACAAGAGAAGAAGGAAAATGATTTAGGAGAGATGAAGAAAGAGGAAGATGAGAAGCAATTGAAATATGAACCTGATGAGGTAGAAAGCCAATGCAAACAGGAAAATTCACAGCCTCAAAGTAACAACAACAATGCAACTTCTTCAAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGTAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTGCTATCTCCAAGAGTTGCATTTTTGGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTCAAGCAAAGAATTGCAGCCCTTGCACAAGACAAGCTTTTCAAAGATGCTCATCAAGAGGCATTGAAGAGGGAGATAGAAAGATTAAGACAGGTATATCTCCATCAGAACCTCAAGAAGATGGAAAATGCTAATGGATCACCCTTACCATCCCCATCACAAAAGCCAATATGTGATTCTCAAACAGAAAGCGAACAACTACTCAATGGAAACACATGTGCATCAGTGGCATCAAAAGAAAGGGTGGAAGAAACAGTTGTGTCTGCTTTAACATGA

Protein sequence

>Msa0262470

MAQLPPKIPNMSPSWPDFSKHQKNIMPTSISTNNIVTTNNYQNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCRGKHDGNNNDNEFDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNDDNEKEKNKQEKKENDLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYLHQNLKKMENANGSPLPSPSQKPICDSQTESEQLLNGNTCASVASKERVEETVVSALT*