AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0300340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300340 MtrunA17_Chr2g0325131 96.023 352 6 2 1 352 1 344 0.0 682
Msa0300340 MtrunA17_Chr4g0040891 62.824 347 92 14 1 330 1 327 2.41e-124 360
Msa0300340 MtrunA17_Chr2g0316551 53.870 323 116 10 1 302 1 311 3.03e-96 290
Msa0300340 MtrunA17_Chr8g0380611 35.094 265 145 8 44 294 73 324 4.45e-28 112
Msa0300340 MtrunA17_Chr5g0432701 48.936 94 48 0 198 291 158 251 2.58e-20 90.9
Msa0300340 MtrunA17_Chr4g0036071 48.454 97 50 0 197 293 358 454 4.93e-20 91.3
Msa0300340 MtrunA17_Chr2g0329551 44.737 114 58 2 197 310 219 327 3.18e-19 88.2
Msa0300340 MtrunA17_Chr3g0107491 46.237 93 50 0 199 291 177 269 1.63e-18 85.9
Msa0300340 MtrunA17_Chr6g0463571 46.000 100 54 0 197 296 149 248 6.30e-18 83.2
Msa0300340 MtrunA17_Chr3g0128781 45.745 94 51 0 198 291 107 200 3.34e-17 81.3
Msa0300340 MtrunA17_Chr1g0156051 48.980 98 46 2 198 293 386 481 1.40e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0300340 AT3G58120.1 59.130 345 109 10 1 330 1 328 3.36e-120 350
Msa0300340 AT2G42380.2 57.101 345 107 8 1 330 1 319 5.09e-114 334
Msa0300340 AT2G42380.1 53.623 345 108 9 1 330 1 308 1.65e-102 304
Msa0300340 AT3G58120.2 58.020 293 96 8 1 278 1 281 5.38e-100 297
Msa0300340 AT2G42380.5 56.701 291 87 7 1 278 1 265 8.32e-93 278
Msa0300340 AT2G42380.3 49.206 252 89 7 1 239 1 226 1.40e-61 197
Msa0300340 AT2G42380.4 49.206 252 89 7 1 239 1 226 1.40e-61 197
Msa0300340 AT1G58110.1 30.448 335 161 11 2 294 20 324 2.40e-27 111
Msa0300340 AT1G58110.2 30.448 335 161 11 2 294 20 324 2.40e-27 111
Msa0300340 AT1G43700.1 46.491 114 56 1 185 293 175 288 7.34e-21 92.4
Msa0300340 AT4G38900.2 48.421 95 49 0 197 291 392 486 7.00e-20 91.3
Msa0300340 AT4G38900.3 48.421 95 49 0 197 291 392 486 7.00e-20 91.3
Msa0300340 AT5G04840.1 29.276 304 163 8 2 296 5 265 3.01e-19 87.4
Msa0300340 AT2G40620.1 46.316 95 51 0 197 291 146 240 4.58e-19 87.8
Msa0300340 AT1G06850.1 48.387 93 48 0 199 291 148 240 1.61e-18 85.9
Msa0300340 AT1G06070.1 46.316 95 51 0 197 291 208 302 1.70e-18 86.7
Msa0300340 AT2G21230.4 36.486 148 89 2 197 340 368 514 3.19e-18 86.3
Msa0300340 AT2G21230.1 36.486 148 89 2 197 340 368 514 3.19e-18 86.3
Msa0300340 AT2G31370.5 31.174 247 143 5 62 291 57 293 7.04e-18 84.3
Msa0300340 AT2G31370.2 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT2G31370.4 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT2G31370.1 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT2G31370.7 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT2G31370.3 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT2G31370.6 31.174 247 143 5 62 291 57 293 7.54e-18 84.3
Msa0300340 AT4G38900.1 45.545 101 49 1 197 291 392 492 1.09e-17 84.7
Msa0300340 AT1G35490.2 28.226 248 133 7 46 291 54 258 7.98e-17 80.5
Msa0300340 AT1G35490.1 28.226 248 133 7 46 291 54 258 7.98e-17 80.5
Msa0300340 AT5G04840.2 29.371 286 150 8 2 278 5 247 5.23e-16 77.0
Msa0300340 AT2G21230.3 34.416 154 90 3 197 340 368 520 6.75e-16 79.3
Msa0300340 AT2G21230.2 46.341 82 44 0 197 278 368 449 3.89e-14 73.6
Msa0300340 AT5G07160.1 41.237 97 57 0 195 291 44 140 2.92e-12 64.3
Msa0300340 AT1G06850.2 68.889 45 14 0 198 242 147 191 5.89e-11 62.4

Find 77 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTCCCTTGTGTGGTTTC+TGG 0.097414 2_3:+55681090 Msa0300340:five_prime_UTR
CTGGAAATATACATATTTAA+AGG 0.190371 2_3:+55681109 Msa0300340:five_prime_UTR
GGTGACATGTTTGGGATCTT+AGG 0.259620 2_3:-55681345 None:intergenic
GTTTGTAGTGACAATGTTAT+TGG 0.263094 2_3:-55681424 None:intergenic
TTTGAGGTCTTGGATTTAAT+TGG 0.274873 2_3:+55684916 Msa0300340:three_prime_UTR
GCATTAGAATCTTGGCAAAT+AGG 0.275046 2_3:+55682335 Msa0300340:intron
CCTCAAATTTGTTGTTGTTA+AGG 0.275676 2_3:-55681260 None:intergenic
GAGAAGAAGGAAAATGATTT+AGG 0.296863 2_3:+55681768 Msa0300340:CDS
GCCAACTTGGTGACATGTTT+GGG 0.333815 2_3:-55681353 None:intergenic
TATTTAAAGGGTTGTGTTAG+AGG 0.336402 2_3:+55681122 Msa0300340:five_prime_UTR
CATTGGCTTTCTACCTCATC+AGG 0.351950 2_3:-55681834 None:intergenic
TGGAAATATACATATTTAAA+GGG 0.356083 2_3:+55681110 Msa0300340:five_prime_UTR
AAATTGCGCTGTATATATAA+TGG 0.357460 2_3:+55685024 Msa0300340:three_prime_UTR
GGTCTTGGATTTAATTGGTT+TGG 0.375520 2_3:+55684921 Msa0300340:three_prime_UTR
GCGTAGTGTAACTTCATTGC+AGG 0.377738 2_3:+55682411 Msa0300340:CDS
GGCCAACTTGGTGACATGTT+TGG 0.381627 2_3:-55681354 None:intergenic
GACAATGTTATTGGTTGAAA+TGG 0.385822 2_3:-55681415 None:intergenic
TCTGTTTGAGAATCACATAT+TGG 0.388915 2_3:-55683896 None:intergenic
CCATCTTCTTGAGGTTCTGA+TGG 0.391631 2_3:-55683832 None:intergenic
GAAGAATAAACAAGAGAAGA+AGG 0.396694 2_3:+55681755 Msa0300340:CDS
ACCAATGCTTGATGATTGTC+GGG 0.399558 2_3:+55681557 Msa0300340:CDS
AAGAAGATGGAAAATGCTAA+TGG 0.406779 2_3:+55683845 Msa0300340:CDS
CCTTAACAACAACAAATTTG+AGG 0.410672 2_3:+55681260 Msa0300340:five_prime_UTR
ATCAGAATCAGAACCCTTCA+TGG 0.433073 2_3:+55681451 Msa0300340:CDS
ACCACACAAGGGAATGTTAG+AGG 0.439664 2_3:-55681084 None:intergenic
GGAGATAGAAAGATTAAGAC+AGG 0.441141 2_3:+55683802 Msa0300340:CDS
GCATTGTTGTTGTTACTTTG+AGG 0.444336 2_3:-55681876 None:intergenic
TACAAAACTATATAACAAAC+AGG 0.456508 2_3:-55681295 None:intergenic
CCCTCTAACATTCCCTTGTG+TGG 0.457112 2_3:+55681083 Msa0300340:five_prime_UTR
CACCAATGCTTGATGATTGT+CGG 0.462711 2_3:+55681556 Msa0300340:CDS
ATTAACATACAATGTATGAA+TGG 0.472844 2_3:-55681171 None:intergenic
AATGTGGAGTGTGATGGATA+TGG 0.473304 2_3:+55684867 Msa0300340:three_prime_UTR
CATCAGTGGCATCAAAAGAA+AGG 0.482392 2_3:+55684643 Msa0300340:CDS
TTCTGATCTGAAGGACTCGA+AGG 0.485897 2_3:-55681705 None:intergenic
GGTAGAAAGCCAATGCAAAC+AGG 0.488493 2_3:+55681842 Msa0300340:CDS
CCATCAGAACCTCAAGAAGA+TGG 0.490491 2_3:+55683832 Msa0300340:CDS
TTAACATACAATGTATGAAT+GGG 0.503238 2_3:-55681170 None:intergenic
ATGTTTAGTGATGAAATATC+TGG 0.505923 2_3:+55681645 Msa0300340:CDS
TGAAAAGCTTGTCTTGTGCA+AGG 0.507196 2_3:-55682694 None:intergenic
TTATTGGTTGAAATGGATGT+TGG 0.515770 2_3:-55681408 None:intergenic
TTGACAAAATTCTGATCTGA+AGG 0.516864 2_3:-55681714 None:intergenic
CCCCGACAATCATCAAGCAT+TGG 0.530465 2_3:-55681558 None:intergenic
TTTAGGAGAGATGAAGAAAG+AGG 0.538946 2_3:+55681785 Msa0300340:CDS
AGGAACTCATCCACCCATGA+AGG 0.539506 2_3:-55681465 None:intergenic
GAAAAGCTTGTCTTGTGCAA+GGG 0.539760 2_3:-55682693 None:intergenic
ATATGGATAAAATGAAAGAA+AGG 0.562865 2_3:+55684884 Msa0300340:three_prime_UTR
TCATCAAGAGGCACTGAAGA+GGG 0.563124 2_3:+55683781 Msa0300340:CDS
CTGATCCAAAGAGAGTCAAA+AGG 0.572655 2_3:+55681922 Msa0300340:CDS
ATCAGTGGCATCAAAAGAAA+GGG 0.574757 2_3:+55684644 Msa0300340:CDS
TTCGATGAAGACAACGTTGG+TGG 0.575587 2_3:-55681681 None:intergenic
TCCCAAACATGTCACCAAGT+TGG 0.580152 2_3:+55681352 Msa0300340:CDS
GGGAAACACATGTGCATCAG+TGG 0.585339 2_3:+55684629 Msa0300340:intron
AGATATTTCATCACTAAACA+TGG 0.586033 2_3:-55681643 None:intergenic
AAAACAAAGACAATGGCTTG+TGG 0.588542 2_3:+55684844 Msa0300340:intron
GACATGTTTGGGATCTTAGG+AGG 0.588767 2_3:-55681342 None:intergenic
CTCATCAAGAGGCACTGAAG+AGG 0.590175 2_3:+55683780 Msa0300340:CDS
TTGTGGAATGTGGAGTGTGA+TGG 0.590221 2_3:+55684861 Msa0300340:three_prime_UTR
CAAGGCGAGGTGCTCATCGA+AGG 0.594155 2_3:+55681502 Msa0300340:CDS
CCACACAAGGGAATGTTAGA+GGG 0.594577 2_3:-55681083 None:intergenic
TTTACATGCAGCTCATCAAG+AGG 0.601727 2_3:+55683769 Msa0300340:intron
GAATCAGAACCCTTCATGGG+TGG 0.607660 2_3:+55681455 Msa0300340:CDS
ATTGAAATATGAACCTGATG+AGG 0.608223 2_3:+55681821 Msa0300340:CDS
TCAGAATCAGAACCCTTCAT+GGG 0.609308 2_3:+55681452 Msa0300340:CDS
TCTGATCTGAAGGACTCGAA+GGG 0.610267 2_3:-55681704 None:intergenic
ATGAGCACCTCGCCTTGCCG+AGG 0.614435 2_3:-55681496 None:intergenic
AGACAATGGCTTGTGGAATG+TGG 0.619824 2_3:+55684851 Msa0300340:intron
GGAACTCATCCACCCATGAA+GGG 0.626852 2_3:-55681464 None:intergenic
AGTGGCATCAAAAGAAAGGG+TGG 0.627047 2_3:+55684647 Msa0300340:CDS
CAAATAGGCAATCAGCACAA+AGG 0.647617 2_3:+55682350 Msa0300340:CDS
GCGAGGTGCTCATCGAAGGT+CGG 0.657525 2_3:+55681506 Msa0300340:CDS
CAGCACAAAGGTCACGTGTG+AGG 0.661809 2_3:+55682362 Msa0300340:CDS
GCCTTGCCGAGGAAAAGTCG+AGG 0.688307 2_3:-55681485 None:intergenic
GATTGTCGGGGTAAACACGA+TGG 0.708511 2_3:+55681570 Msa0300340:CDS
GGGTTCGATGAAGACAACGT+TGG 0.721008 2_3:-55681684 None:intergenic
ATATTTCCAGAAACCACACA+AGG 0.726763 2_3:-55681096 None:intergenic
CCAATGCTTGATGATTGTCG+GGG 0.745183 2_3:+55681558 Msa0300340:CDS
TATTTCCAGAAACCACACAA+GGG 0.750776 2_3:-55681095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAAAAAAAAAATGTTAA+AGG - chr2_3:55680928-55680947 None:intergenic 10.0%
!!! CTTTAACATTTTTTTTTTAT+AGG + chr2_3:55680926-55680945 Msa0300340:five_prime_UTR 10.0%
!!! TTTTGTTTTTTTAATTAACT+TGG + chr2_3:55681053-55681072 Msa0300340:five_prime_UTR 10.0%
!!! GTTTTATTAATAATAATTAC+TGG + chr2_3:55683635-55683654 Msa0300340:intron 10.0%
!! TGGAAATATACATATTTAAA+GGG + chr2_3:55681110-55681129 Msa0300340:five_prime_UTR 15.0%
!! AGATAAAAATTAAAACATGT+AGG + chr2_3:55681972-55681991 Msa0300340:intron 15.0%
!! ATGAAATGACAAAATAAAAA+TGG + chr2_3:55682849-55682868 Msa0300340:intron 15.0%
!! AGAATTAATATCAATATTGA+AGG + chr2_3:55683299-55683318 Msa0300340:intron 15.0%
!! ATATTTGAAAAATACTTAGT+TGG - chr2_3:55683500-55683519 None:intergenic 15.0%
!! TTTAAATCTGATAAGTAAAA+AGG - chr2_3:55683557-55683576 None:intergenic 15.0%
!! AATTAATGAAAAACAATGAT+TGG - chr2_3:55683661-55683680 None:intergenic 15.0%
!! CTAAATAGTATTAACTATTA+AGG - chr2_3:55683693-55683712 None:intergenic 15.0%
!!! ATTGCAGAATTTTTTTTATA+AGG + chr2_3:55684044-55684063 Msa0300340:intron 15.0%
!! TCTATATAGAAAAAATTGAA+TGG + chr2_3:55684719-55684738 Msa0300340:intron 15.0%
!! CTGGAAATATACATATTTAA+AGG + chr2_3:55681109-55681128 Msa0300340:five_prime_UTR 20.0%
!! TTAACATACAATGTATGAAT+GGG - chr2_3:55681173-55681192 None:intergenic 20.0%
!! ATTAACATACAATGTATGAA+TGG - chr2_3:55681174-55681193 None:intergenic 20.0%
!! TACAAAACTATATAACAAAC+AGG - chr2_3:55681298-55681317 None:intergenic 20.0%
!!! CATAATATTTTTTTGGTGTT+TGG - chr2_3:55681388-55681407 None:intergenic 20.0%
!!! ATGTTGGCATAATATTTTTT+TGG - chr2_3:55681395-55681414 None:intergenic 20.0%
!! AATTGAAATATTGTTGATCT+TGG + chr2_3:55682219-55682238 Msa0300340:intron 20.0%
!! AAATTTAATAAGAGTGAAAC+AGG + chr2_3:55682946-55682965 Msa0300340:intron 20.0%
!! TATATTAACTACTTTGTGAT+GGG - chr2_3:55683062-55683081 None:intergenic 20.0%
!! AAGTATTTGTACATTCTATT+TGG - chr2_3:55683473-55683492 None:intergenic 20.0%
!!! GTAAAATATCCATTTTGAAA+AGG + chr2_3:55684448-55684467 Msa0300340:intron 20.0%
!!! ATTTAGTTTCCTTTTCAAAA+TGG - chr2_3:55684460-55684479 None:intergenic 20.0%
!! ATATAGAAAAAATTGAATGG+AGG + chr2_3:55684722-55684741 Msa0300340:intron 20.0%
!!! TTTATCTTTTTCAATCCATT+TGG + chr2_3:55684820-55684839 Msa0300340:intron 20.0%
!! ATATGGATAAAATGAAAGAA+AGG + chr2_3:55684884-55684903 Msa0300340:three_prime_UTR 20.0%
! AGATATTTCATCACTAAACA+TGG - chr2_3:55681646-55681665 None:intergenic 25.0%
! ATGTTTAGTGATGAAATATC+TGG + chr2_3:55681645-55681664 Msa0300340:CDS 25.0%
! ACTAAAAAATTGTGTCATGT+GGG - chr2_3:55682113-55682132 None:intergenic 25.0%
! TACTAAAAAATTGTGTCATG+TGG - chr2_3:55682114-55682133 None:intergenic 25.0%
!!! GTTTTTTTGCATTAGAATCT+TGG + chr2_3:55682327-55682346 Msa0300340:intron 25.0%
! ATTTGCAGTACTATAATATC+TGG + chr2_3:55682481-55682500 Msa0300340:intron 25.0%
! ATATTAACTACTTTGTGATG+GGG - chr2_3:55683061-55683080 None:intergenic 25.0%
! GTATATTAACTACTTTGTGA+TGG - chr2_3:55683063-55683082 None:intergenic 25.0%
!!! CTCTTGAAATTTTGATACAT+AGG - chr2_3:55683162-55683181 None:intergenic 25.0%
! GTTAGTCAAAATAGTTTCTT+AGG + chr2_3:55683200-55683219 Msa0300340:intron 25.0%
!! AAGGAAAATGAGAGATTTTA+AGG + chr2_3:55684063-55684082 Msa0300340:intron 25.0%
!!! AAATGAGAGATTTTAAGGAA+AGG + chr2_3:55684068-55684087 Msa0300340:intron 25.0%
!!! AATGAGAGATTTTAAGGAAA+GGG + chr2_3:55684069-55684088 Msa0300340:intron 25.0%
! AAAATAGCGAACTTAAAACT+TGG + chr2_3:55684198-55684217 Msa0300340:intron 25.0%
!!! TGTGTTTTGCTTTAAAAGAA+AGG + chr2_3:55684575-55684594 Msa0300340:intron 25.0%
!!! GTGTTTTGCTTTAAAAGAAA+GGG + chr2_3:55684576-55684595 Msa0300340:intron 25.0%
!!! ATTGTCTTTGTTTTTCCAAA+TGG - chr2_3:55684838-55684857 None:intergenic 25.0%
! ATTTGGAAAAACAAAGACAA+TGG + chr2_3:55684837-55684856 Msa0300340:intron 25.0%
! AAATTGCGCTGTATATATAA+TGG + chr2_3:55685024-55685043 Msa0300340:three_prime_UTR 25.0%
TATTTAAAGGGTTGTGTTAG+AGG + chr2_3:55681122-55681141 Msa0300340:five_prime_UTR 30.0%
!! CCTCAAATTTGTTGTTGTTA+AGG - chr2_3:55681263-55681282 None:intergenic 30.0%
CCTTAACAACAACAAATTTG+AGG + chr2_3:55681260-55681279 Msa0300340:five_prime_UTR 30.0%
! TTTTGTACATCTCTCTCAAA+TGG + chr2_3:55681311-55681330 Msa0300340:exon 30.0%
!!! TTTTGGTGTTTGGAAAAATC+TGG - chr2_3:55681378-55681397 None:intergenic 30.0%
! TTATTGGTTGAAATGGATGT+TGG - chr2_3:55681411-55681430 None:intergenic 30.0%
! GACAATGTTATTGGTTGAAA+TGG - chr2_3:55681418-55681437 None:intergenic 30.0%
GTTTGTAGTGACAATGTTAT+TGG - chr2_3:55681427-55681446 None:intergenic 30.0%
TTGACAAAATTCTGATCTGA+AGG - chr2_3:55681717-55681736 None:intergenic 30.0%
GAAGAATAAACAAGAGAAGA+AGG + chr2_3:55681755-55681774 Msa0300340:CDS 30.0%
GAGAAGAAGGAAAATGATTT+AGG + chr2_3:55681768-55681787 Msa0300340:CDS 30.0%
ATTGAAATATGAACCTGATG+AGG + chr2_3:55681821-55681840 Msa0300340:CDS 30.0%
!! AATTACCTTTTGACTCTCTT+TGG - chr2_3:55681930-55681949 None:intergenic 30.0%
TTCAATATTTGGACAGTAGA+AGG - chr2_3:55682575-55682594 None:intergenic 30.0%
TTCTACTGTCCAAATATTGA+AGG + chr2_3:55682574-55682593 Msa0300340:intron 30.0%
AAACTTCAGCCTTCAATATT+TGG - chr2_3:55682586-55682605 None:intergenic 30.0%
CAGTGCTATATATAGCTTAT+TGG - chr2_3:55682885-55682904 None:intergenic 30.0%
TATTAACTACTTTGTGATGG+GGG - chr2_3:55683060-55683079 None:intergenic 30.0%
AATCTACTAACATTTGAGCT+CGG + chr2_3:55683088-55683107 Msa0300340:intron 30.0%
ATTATTGTGCTTACTCGTTA+GGG + chr2_3:55683322-55683341 Msa0300340:intron 30.0%
TACTATTTAGACACATAGCT+AGG + chr2_3:55683703-55683722 Msa0300340:intron 30.0%
ACTATTTAGACACATAGCTA+GGG + chr2_3:55683704-55683723 Msa0300340:intron 30.0%
AAGAAGATGGAAAATGCTAA+TGG + chr2_3:55683845-55683864 Msa0300340:CDS 30.0%
TCTGTTTGAGAATCACATAT+TGG - chr2_3:55683899-55683918 None:intergenic 30.0%
AAGGAAAGGGAAAATAAATG+AGG + chr2_3:55684082-55684101 Msa0300340:intron 30.0%
AGGAAAGGGAAAATAAATGA+GGG + chr2_3:55684083-55684102 Msa0300340:intron 30.0%
ATTGTTTAATCTTACTCGCA+CGG + chr2_3:55684221-55684240 Msa0300340:intron 30.0%
TAGATATGACTGACAACATA+TGG + chr2_3:55684246-55684265 Msa0300340:intron 30.0%
ATAATCGACTGTAAATTCAG+CGG - chr2_3:55684375-55684394 None:intergenic 30.0%
!!! ACTTGTTTTTATGCCACATT+TGG - chr2_3:55684428-55684447 None:intergenic 30.0%
TAGTACTACTAGTACAAGTA+GGG + chr2_3:55684519-55684538 Msa0300340:intron 30.0%
! TTTGAGGTCTTGGATTTAAT+TGG + chr2_3:55684916-55684935 Msa0300340:three_prime_UTR 30.0%
TATTTCCAGAAACCACACAA+GGG - chr2_3:55681098-55681117 None:intergenic 35.0%
ATATTTCCAGAAACCACACA+AGG - chr2_3:55681099-55681118 None:intergenic 35.0%
TTTAGGAGAGATGAAGAAAG+AGG + chr2_3:55681785-55681804 Msa0300340:CDS 35.0%
! GTGAATTTTCCTGTTTGCAT+TGG - chr2_3:55681854-55681873 None:intergenic 35.0%
!! GCATTGTTGTTGTTACTTTG+AGG - chr2_3:55681879-55681898 None:intergenic 35.0%
GAATCAGTTGCAAAACTCAA+AGG - chr2_3:55682305-55682324 None:intergenic 35.0%
!! TTGAGTTTTGCAACTGATTC+TGG + chr2_3:55682305-55682324 Msa0300340:intron 35.0%
GCATTAGAATCTTGGCAAAT+AGG + chr2_3:55682335-55682354 Msa0300340:intron 35.0%
! ATCTCCAAGAGTTGCATTTT+TGG + chr2_3:55682613-55682632 Msa0300340:CDS 35.0%
TGATCCAAAAATGCAACTCT+TGG - chr2_3:55682620-55682639 None:intergenic 35.0%
! CAAGACAAGCTTTTCAAAGA+TGG + chr2_3:55682701-55682720 Msa0300340:CDS 35.0%
!! ATTTCATGCTTGACTTGTCA+TGG - chr2_3:55682836-55682855 None:intergenic 35.0%
ATCTACTAACATTTGAGCTC+GGG + chr2_3:55683089-55683108 Msa0300340:intron 35.0%
GATTATTGTGCTTACTCGTT+AGG + chr2_3:55683321-55683340 Msa0300340:intron 35.0%
TATGTTTGTGTGCGTTCAAA+TGG - chr2_3:55683365-55683384 None:intergenic 35.0%
AAAAGGAGCTAACTACTTTG+AGG - chr2_3:55683540-55683559 None:intergenic 35.0%
GGAGATAGAAAGATTAAGAC+AGG + chr2_3:55683802-55683821 Msa0300340:CDS 35.0%
! TAGCATTTTCCATCTTCTTG+AGG - chr2_3:55683844-55683863 None:intergenic 35.0%
!!! ACATATTGGCTTTTGTGATG+GGG - chr2_3:55683885-55683904 None:intergenic 35.0%
!!! CACATATTGGCTTTTGTGAT+GGG - chr2_3:55683886-55683905 None:intergenic 35.0%
!!! TCACATATTGGCTTTTGTGA+TGG - chr2_3:55683887-55683906 None:intergenic 35.0%
CACACGGTTACAATTACATA+AGG - chr2_3:55684134-55684153 None:intergenic 35.0%
AATAGAACATGAGTTGCATG+CGG - chr2_3:55684286-55684305 None:intergenic 35.0%
AGACCGTTCGATTAATCTAA+CGG + chr2_3:55684395-55684414 Msa0300340:intron 35.0%
AGACCGTTAGATTAATCGAA+CGG - chr2_3:55684401-55684420 None:intergenic 35.0%
TTTGAAGAGTCACACGTTAT+TGG + chr2_3:55684484-55684503 Msa0300340:intron 35.0%
TTGAAGAGTCACACGTTATT+GGG + chr2_3:55684485-55684504 Msa0300340:intron 35.0%
GTAGTACTACTAGTACAAGT+AGG + chr2_3:55684518-55684537 Msa0300340:intron 35.0%
ATCAGTGGCATCAAAAGAAA+GGG + chr2_3:55684644-55684663 Msa0300340:CDS 35.0%
AAAACAAAGACAATGGCTTG+TGG + chr2_3:55684844-55684863 Msa0300340:intron 35.0%
GGTCTTGGATTTAATTGGTT+TGG + chr2_3:55684921-55684940 Msa0300340:three_prime_UTR 35.0%
TTGGAAAAATCTGGCCAACT+TGG - chr2_3:55681369-55681388 None:intergenic 40.0%
ATCAGAATCAGAACCCTTCA+TGG + chr2_3:55681451-55681470 Msa0300340:CDS 40.0%
TCAGAATCAGAACCCTTCAT+GGG + chr2_3:55681452-55681471 Msa0300340:CDS 40.0%
! CACCAATGCTTGATGATTGT+CGG + chr2_3:55681556-55681575 Msa0300340:CDS 40.0%
! ACCAATGCTTGATGATTGTC+GGG + chr2_3:55681557-55681576 Msa0300340:CDS 40.0%
CTGATCCAAAGAGAGTCAAA+AGG + chr2_3:55681922-55681941 Msa0300340:CDS 40.0%
CAAATAGGCAATCAGCACAA+AGG + chr2_3:55682350-55682369 Msa0300340:CDS 40.0%
GAAAAGCTTGTCTTGTGCAA+GGG - chr2_3:55682696-55682715 None:intergenic 40.0%
TGAAAAGCTTGTCTTGTGCA+AGG - chr2_3:55682697-55682716 None:intergenic 40.0%
GTGAAAGAATATGTACCCTG+TGG + chr2_3:55682799-55682818 Msa0300340:intron 40.0%
! TGACTTGTCATGGTCTCATT+AGG - chr2_3:55682826-55682845 None:intergenic 40.0%
GCACTGTAGTTACTTGAAGT+TGG + chr2_3:55682899-55682918 Msa0300340:intron 40.0%
GTTGGTCAAGTATTCACTAG+TGG + chr2_3:55682917-55682936 Msa0300340:intron 40.0%
TGTGTGCAGTCTCATAACTA+TGG - chr2_3:55682973-55682992 None:intergenic 40.0%
GGGCACATGATCACATAAAT+AGG - chr2_3:55683040-55683059 None:intergenic 40.0%
TTTACATGCAGCTCATCAAG+AGG + chr2_3:55683769-55683788 Msa0300340:intron 40.0%
!! TTTTGTGATGGGGATGGTAA+GGG - chr2_3:55683875-55683894 None:intergenic 40.0%
GACTGACAACATATGGTTAG+AGG + chr2_3:55684253-55684272 Msa0300340:intron 40.0%
TAACGGTCTACAACCAAATG+TGG + chr2_3:55684412-55684431 Msa0300340:intron 40.0%
CCAATCATGCAAACTTTGAG+TGG - chr2_3:55684603-55684622 None:intergenic 40.0%
CCACTCAAAGTTTGCATGAT+TGG + chr2_3:55684600-55684619 Msa0300340:intron 40.0%
AGTTTGCATGATTGGAATGC+AGG + chr2_3:55684608-55684627 Msa0300340:intron 40.0%
GTTTGCATGATTGGAATGCA+GGG + chr2_3:55684609-55684628 Msa0300340:intron 40.0%
CATCAGTGGCATCAAAAGAA+AGG + chr2_3:55684643-55684662 Msa0300340:CDS 40.0%
!! AATGTGGAGTGTGATGGATA+TGG + chr2_3:55684867-55684886 Msa0300340:three_prime_UTR 40.0%
!! AGAAAGGTGTGTCAGTTTTG+AGG + chr2_3:55684900-55684919 Msa0300340:three_prime_UTR 40.0%
CCACACAAGGGAATGTTAGA+GGG - chr2_3:55681086-55681105 None:intergenic 45.0%
ACCACACAAGGGAATGTTAG+AGG - chr2_3:55681087-55681106 None:intergenic 45.0%
ACATTCCCTTGTGTGGTTTC+TGG + chr2_3:55681090-55681109 Msa0300340:five_prime_UTR 45.0%
! GACATGTTTGGGATCTTAGG+AGG - chr2_3:55681345-55681364 None:intergenic 45.0%
! GGTGACATGTTTGGGATCTT+AGG - chr2_3:55681348-55681367 None:intergenic 45.0%
TCCCAAACATGTCACCAAGT+TGG + chr2_3:55681352-55681371 Msa0300340:CDS 45.0%
! GCCAACTTGGTGACATGTTT+GGG - chr2_3:55681356-55681375 None:intergenic 45.0%
! TGAGTTCCTCGACTTTTCCT+CGG + chr2_3:55681479-55681498 Msa0300340:CDS 45.0%
! CCAATGCTTGATGATTGTCG+GGG + chr2_3:55681558-55681577 Msa0300340:CDS 45.0%
TTCGATGAAGACAACGTTGG+TGG - chr2_3:55681684-55681703 None:intergenic 45.0%
TCTGATCTGAAGGACTCGAA+GGG - chr2_3:55681707-55681726 None:intergenic 45.0%
TTCTGATCTGAAGGACTCGA+AGG - chr2_3:55681708-55681727 None:intergenic 45.0%
!! CATTGGCTTTCTACCTCATC+AGG - chr2_3:55681837-55681856 None:intergenic 45.0%
GGTAGAAAGCCAATGCAAAC+AGG + chr2_3:55681842-55681861 Msa0300340:CDS 45.0%
GCGTAGTGTAACTTCATTGC+AGG + chr2_3:55682411-55682430 Msa0300340:CDS 45.0%
ATGGTCTCATTAGGACCACA+GGG - chr2_3:55682817-55682836 None:intergenic 45.0%
!! TCATCAAGAGGCACTGAAGA+GGG + chr2_3:55683781-55683800 Msa0300340:CDS 45.0%
! CCATCTTCTTGAGGTTCTGA+TGG - chr2_3:55683835-55683854 None:intergenic 45.0%
CCATCAGAACCTCAAGAAGA+TGG + chr2_3:55683832-55683851 Msa0300340:CDS 45.0%
!! CTTTTGTGATGGGGATGGTA+AGG - chr2_3:55683876-55683895 None:intergenic 45.0%
!!! ATTGGCTTTTGTGATGGGGA+TGG - chr2_3:55683881-55683900 None:intergenic 45.0%
TGACAGACTGACTATGCACA+CGG - chr2_3:55684150-55684169 None:intergenic 45.0%
CATAGTCAGTCTGTCACATC+TGG + chr2_3:55684154-55684173 Msa0300340:intron 45.0%
AAGAGTCACACGTTATTGGG+TGG + chr2_3:55684488-55684507 Msa0300340:intron 45.0%
AGTGGCATCAAAAGAAAGGG+TGG + chr2_3:55684647-55684666 Msa0300340:CDS 45.0%
! AGACAATGGCTTGTGGAATG+TGG + chr2_3:55684851-55684870 Msa0300340:intron 45.0%
TTGTGGAATGTGGAGTGTGA+TGG + chr2_3:55684861-55684880 Msa0300340:three_prime_UTR 45.0%
!!! GTGTGTCAGTTTTGAGGTCT+TGG + chr2_3:55684906-55684925 Msa0300340:three_prime_UTR 45.0%
!! TATAAAAAAAAAATGTTAAA+GGG - chr2_3:55680927-55680946 None:intergenic 5.0%
!!! ATTTTACTAAATTTTATTTA+GGG - chr2_3:55680963-55680982 None:intergenic 5.0%
!!! AATTTTACTAAATTTTATTT+AGG - chr2_3:55680964-55680983 None:intergenic 5.0%
CCCTCTAACATTCCCTTGTG+TGG + chr2_3:55681083-55681102 Msa0300340:five_prime_UTR 50.0%
! GGCCAACTTGGTGACATGTT+TGG - chr2_3:55681357-55681376 None:intergenic 50.0%
GAATCAGAACCCTTCATGGG+TGG + chr2_3:55681455-55681474 Msa0300340:CDS 50.0%
GGAACTCATCCACCCATGAA+GGG - chr2_3:55681467-55681486 None:intergenic 50.0%
AGGAACTCATCCACCCATGA+AGG - chr2_3:55681468-55681487 None:intergenic 50.0%
CCCCGACAATCATCAAGCAT+TGG - chr2_3:55681561-55681580 None:intergenic 50.0%
GATTGTCGGGGTAAACACGA+TGG + chr2_3:55681570-55681589 Msa0300340:CDS 50.0%
GGGTTCGATGAAGACAACGT+TGG - chr2_3:55681687-55681706 None:intergenic 50.0%
CATGGTCTCATTAGGACCAC+AGG - chr2_3:55682818-55682837 None:intergenic 50.0%
!! GGAGCTAACTACTTTGAGGC+AGG - chr2_3:55683536-55683555 None:intergenic 50.0%
!! CTCATCAAGAGGCACTGAAG+AGG + chr2_3:55683780-55683799 Msa0300340:CDS 50.0%
TCACACGTTATTGGGTGGTG+AGG + chr2_3:55684493-55684512 Msa0300340:intron 50.0%
GGGAAACACATGTGCATCAG+TGG + chr2_3:55684629-55684648 Msa0300340:intron 50.0%
! TCCTCGACTTTTCCTCGGCA+AGG + chr2_3:55681484-55681503 Msa0300340:CDS 55.0%
CAGCACAAAGGTCACGTGTG+AGG + chr2_3:55682362-55682381 Msa0300340:CDS 55.0%
GCCTTGCCGAGGAAAAGTCG+AGG - chr2_3:55681488-55681507 None:intergenic 60.0%
! GACTTTTCCTCGGCAAGGCG+AGG + chr2_3:55681489-55681508 Msa0300340:CDS 60.0%
! CAAGGCGAGGTGCTCATCGA+AGG + chr2_3:55681502-55681521 Msa0300340:CDS 60.0%
! GCGAGGTGCTCATCGAAGGT+CGG + chr2_3:55681506-55681525 Msa0300340:CDS 60.0%
ATGAGCACCTCGCCTTGCCG+AGG - chr2_3:55681499-55681518 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 55680924 55685054 55680924 ID=Msa0300340;Name=Msa0300340
chr2_3 mRNA 55680924 55685054 55680924 ID=Msa0300340-mRNA-1;Parent=Msa0300340;Name=Msa0300340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=406|1|1|1|0.8|0.66|6|203|352
chr2_3 exon 55680924 55681943 55680924 ID=Msa0300340-mRNA-1:exon:17777;Parent=Msa0300340-mRNA-1
chr2_3 exon 55682342 55682432 55682342 ID=Msa0300340-mRNA-1:exon:17778;Parent=Msa0300340-mRNA-1
chr2_3 exon 55682596 55682722 55682596 ID=Msa0300340-mRNA-1:exon:17779;Parent=Msa0300340-mRNA-1
chr2_3 exon 55683780 55683937 55683780 ID=Msa0300340-mRNA-1:exon:17780;Parent=Msa0300340-mRNA-1
chr2_3 exon 55684630 55684699 55684630 ID=Msa0300340-mRNA-1:exon:17781;Parent=Msa0300340-mRNA-1
chr2_3 exon 55684853 55685054 55684853 ID=Msa0300340-mRNA-1:exon:17782;Parent=Msa0300340-mRNA-1
chr2_3 five_prime_UTR 55680924 55681329 55680924 ID=Msa0300340-mRNA-1:five_prime_utr;Parent=Msa0300340-mRNA-1
chr2_3 CDS 55681330 55681943 55681330 ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1
chr2_3 CDS 55682342 55682432 55682342 ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1
chr2_3 CDS 55682596 55682722 55682596 ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1
chr2_3 CDS 55683780 55683937 55683780 ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1
chr2_3 CDS 55684630 55684698 55684630 ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1
chr2_3 three_prime_UTR 55684699 55684699 55684699 ID=Msa0300340-mRNA-1:three_prime_utr;Parent=Msa0300340-mRNA-1
chr2_3 three_prime_UTR 55684853 55685054 55684853 ID=Msa0300340-mRNA-1:three_prime_utr;Parent=Msa0300340-mRNA-1
Gene Sequence

>Msa0300340

ATGGCACAATTACCTCCTAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTTTCCAAACACCAAAAAAATATTATGCCAACATCCATTTCAACCAATAACATTGTCACTACAAACAATTATCAGAATCAGAACCCTTCATGGGTGGATGAGTTCCTCGACTTTTCCTCGGCAAGGCGAGGTGCTCATCGAAGGTCGGTCAGCGATTCAGTCACATTCTTAGAAACACCAATGCTTGATGATTGTCGGGGTAAACACGATGGTAACAACAATGACAACGAGTTCGACAAGTTTGATGATGAACAATTTTTGTCCATGTTTAGTGATGAAATATCTGGTGTCAATAACATGCCACCAACGTTGTCTTCATCGAACCCTTCGAGTCCTTCAGATCAGAATTTTGTCAATGATGATAATGAGAAAGAGAAGAATAAACAAGAGAAGAAGGAAAATGATTTAGGAGAGATGAAGAAAGAGGAAGATGAGAAGCAATTGAAATATGAACCTGATGAGGTAGAAAGCCAATGCAAACAGGAAAATTCACAGCCTCAAAGTAACAACAACAATGCAACTTCTTCAAATGATAGAATTACTGATCCAAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCAGCACAAAGGTCACGTGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGTAGTGTAACTTCATTGCAGGCTGAAGTTTCAGTGCTATCTCCAAGAGTTGCATTTTTGGATCATCAACGATTGCTTCTAAATGTTGACAACAGTGCTCTCAAGCAAAGAATTGCAGCCCTTGCACAAGACAAGCTTTTCAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAAAGATTAAGACAGGTATATCACCATCAGAACCTCAAGAAGATGGAAAATGCTAATGGATCACCCTTACCATCCCCATCACAAAAGCCAATATGTGATTCTCAAACAGAAAGCGAACAACTACTCAATGGAAACACATGTGCATCAGTGGCATCAAAAGAAAGGGTGGAAGAAACAGTTGTGTCTGCTTTAACATGA

Protein sequence

>Msa0300340

MAQLPPKIPNMSPSWPDFSKHQKNIMPTSISTNNIVTTNNYQNQNPSWVDEFLDFSSARRGAHRRSVSDSVTFLETPMLDDCRGKHDGNNNDNEFDKFDDEQFLSMFSDEISGVNNMPPTLSSSNPSSPSDQNFVNDDNEKEKNKQEKKENDLGEMKKEEDEKQLKYEPDEVESQCKQENSQPQSNNNNATSSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKLFKDAHQEALKREIERLRQVYHHQNLKKMENANGSPLPSPSQKPICDSQTESEQLLNGNTCASVASKERVEETVVSALT*