Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300340 | XP_013465188.1 | 96.023 | 352 | 6 | 2 | 1 | 352 | 1 | 344 | 0.0 | 682 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300340 | sp|Q9M2K4|BZP61_ARATH | 59.130 | 345 | 109 | 10 | 1 | 330 | 1 | 328 | 3.31e-119 | 350 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300340 | G7ZUL8 | 96.023 | 352 | 6 | 2 | 1 | 352 | 1 | 344 | 0.0 | 682 |
Gene ID | Type | Classification |
---|---|---|
Msa0300340 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0221020 | Msa0300340 | 0.948869 | 3.999322e-107 | -8.615850e-47 |
Msa0226640 | Msa0300340 | 0.807174 | 5.750158e-50 | -8.615850e-47 |
Msa0262470 | Msa0300340 | 0.932089 | 1.436825e-94 | -8.615850e-47 |
Msa0300340 | Msa0337680 | 0.968143 | 2.930057e-128 | -8.615850e-47 |
Msa0300340 | Msa0798080 | 0.801234 | 9.913714e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300340 | MtrunA17_Chr2g0325131 | 96.023 | 352 | 6 | 2 | 1 | 352 | 1 | 344 | 0.0 | 682 |
Msa0300340 | MtrunA17_Chr4g0040891 | 62.824 | 347 | 92 | 14 | 1 | 330 | 1 | 327 | 2.41e-124 | 360 |
Msa0300340 | MtrunA17_Chr2g0316551 | 53.870 | 323 | 116 | 10 | 1 | 302 | 1 | 311 | 3.03e-96 | 290 |
Msa0300340 | MtrunA17_Chr8g0380611 | 35.094 | 265 | 145 | 8 | 44 | 294 | 73 | 324 | 4.45e-28 | 112 |
Msa0300340 | MtrunA17_Chr5g0432701 | 48.936 | 94 | 48 | 0 | 198 | 291 | 158 | 251 | 2.58e-20 | 90.9 |
Msa0300340 | MtrunA17_Chr4g0036071 | 48.454 | 97 | 50 | 0 | 197 | 293 | 358 | 454 | 4.93e-20 | 91.3 |
Msa0300340 | MtrunA17_Chr2g0329551 | 44.737 | 114 | 58 | 2 | 197 | 310 | 219 | 327 | 3.18e-19 | 88.2 |
Msa0300340 | MtrunA17_Chr3g0107491 | 46.237 | 93 | 50 | 0 | 199 | 291 | 177 | 269 | 1.63e-18 | 85.9 |
Msa0300340 | MtrunA17_Chr6g0463571 | 46.000 | 100 | 54 | 0 | 197 | 296 | 149 | 248 | 6.30e-18 | 83.2 |
Msa0300340 | MtrunA17_Chr3g0128781 | 45.745 | 94 | 51 | 0 | 198 | 291 | 107 | 200 | 3.34e-17 | 81.3 |
Msa0300340 | MtrunA17_Chr1g0156051 | 48.980 | 98 | 46 | 2 | 198 | 293 | 386 | 481 | 1.40e-12 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0300340 | AT3G58120.1 | 59.130 | 345 | 109 | 10 | 1 | 330 | 1 | 328 | 3.36e-120 | 350 |
Msa0300340 | AT2G42380.2 | 57.101 | 345 | 107 | 8 | 1 | 330 | 1 | 319 | 5.09e-114 | 334 |
Msa0300340 | AT2G42380.1 | 53.623 | 345 | 108 | 9 | 1 | 330 | 1 | 308 | 1.65e-102 | 304 |
Msa0300340 | AT3G58120.2 | 58.020 | 293 | 96 | 8 | 1 | 278 | 1 | 281 | 5.38e-100 | 297 |
Msa0300340 | AT2G42380.5 | 56.701 | 291 | 87 | 7 | 1 | 278 | 1 | 265 | 8.32e-93 | 278 |
Msa0300340 | AT2G42380.3 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 1.40e-61 | 197 |
Msa0300340 | AT2G42380.4 | 49.206 | 252 | 89 | 7 | 1 | 239 | 1 | 226 | 1.40e-61 | 197 |
Msa0300340 | AT1G58110.1 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 2.40e-27 | 111 |
Msa0300340 | AT1G58110.2 | 30.448 | 335 | 161 | 11 | 2 | 294 | 20 | 324 | 2.40e-27 | 111 |
Msa0300340 | AT1G43700.1 | 46.491 | 114 | 56 | 1 | 185 | 293 | 175 | 288 | 7.34e-21 | 92.4 |
Msa0300340 | AT4G38900.2 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 7.00e-20 | 91.3 |
Msa0300340 | AT4G38900.3 | 48.421 | 95 | 49 | 0 | 197 | 291 | 392 | 486 | 7.00e-20 | 91.3 |
Msa0300340 | AT5G04840.1 | 29.276 | 304 | 163 | 8 | 2 | 296 | 5 | 265 | 3.01e-19 | 87.4 |
Msa0300340 | AT2G40620.1 | 46.316 | 95 | 51 | 0 | 197 | 291 | 146 | 240 | 4.58e-19 | 87.8 |
Msa0300340 | AT1G06850.1 | 48.387 | 93 | 48 | 0 | 199 | 291 | 148 | 240 | 1.61e-18 | 85.9 |
Msa0300340 | AT1G06070.1 | 46.316 | 95 | 51 | 0 | 197 | 291 | 208 | 302 | 1.70e-18 | 86.7 |
Msa0300340 | AT2G21230.4 | 36.486 | 148 | 89 | 2 | 197 | 340 | 368 | 514 | 3.19e-18 | 86.3 |
Msa0300340 | AT2G21230.1 | 36.486 | 148 | 89 | 2 | 197 | 340 | 368 | 514 | 3.19e-18 | 86.3 |
Msa0300340 | AT2G31370.5 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.04e-18 | 84.3 |
Msa0300340 | AT2G31370.2 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT2G31370.4 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT2G31370.1 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT2G31370.7 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT2G31370.3 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT2G31370.6 | 31.174 | 247 | 143 | 5 | 62 | 291 | 57 | 293 | 7.54e-18 | 84.3 |
Msa0300340 | AT4G38900.1 | 45.545 | 101 | 49 | 1 | 197 | 291 | 392 | 492 | 1.09e-17 | 84.7 |
Msa0300340 | AT1G35490.2 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 7.98e-17 | 80.5 |
Msa0300340 | AT1G35490.1 | 28.226 | 248 | 133 | 7 | 46 | 291 | 54 | 258 | 7.98e-17 | 80.5 |
Msa0300340 | AT5G04840.2 | 29.371 | 286 | 150 | 8 | 2 | 278 | 5 | 247 | 5.23e-16 | 77.0 |
Msa0300340 | AT2G21230.3 | 34.416 | 154 | 90 | 3 | 197 | 340 | 368 | 520 | 6.75e-16 | 79.3 |
Msa0300340 | AT2G21230.2 | 46.341 | 82 | 44 | 0 | 197 | 278 | 368 | 449 | 3.89e-14 | 73.6 |
Msa0300340 | AT5G07160.1 | 41.237 | 97 | 57 | 0 | 195 | 291 | 44 | 140 | 2.92e-12 | 64.3 |
Msa0300340 | AT1G06850.2 | 68.889 | 45 | 14 | 0 | 198 | 242 | 147 | 191 | 5.89e-11 | 62.4 |
Find 77 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATTCCCTTGTGTGGTTTC+TGG | 0.097414 | 2_3:+55681090 | Msa0300340:five_prime_UTR |
CTGGAAATATACATATTTAA+AGG | 0.190371 | 2_3:+55681109 | Msa0300340:five_prime_UTR |
GGTGACATGTTTGGGATCTT+AGG | 0.259620 | 2_3:-55681345 | None:intergenic |
GTTTGTAGTGACAATGTTAT+TGG | 0.263094 | 2_3:-55681424 | None:intergenic |
TTTGAGGTCTTGGATTTAAT+TGG | 0.274873 | 2_3:+55684916 | Msa0300340:three_prime_UTR |
GCATTAGAATCTTGGCAAAT+AGG | 0.275046 | 2_3:+55682335 | Msa0300340:intron |
CCTCAAATTTGTTGTTGTTA+AGG | 0.275676 | 2_3:-55681260 | None:intergenic |
GAGAAGAAGGAAAATGATTT+AGG | 0.296863 | 2_3:+55681768 | Msa0300340:CDS |
GCCAACTTGGTGACATGTTT+GGG | 0.333815 | 2_3:-55681353 | None:intergenic |
TATTTAAAGGGTTGTGTTAG+AGG | 0.336402 | 2_3:+55681122 | Msa0300340:five_prime_UTR |
CATTGGCTTTCTACCTCATC+AGG | 0.351950 | 2_3:-55681834 | None:intergenic |
TGGAAATATACATATTTAAA+GGG | 0.356083 | 2_3:+55681110 | Msa0300340:five_prime_UTR |
AAATTGCGCTGTATATATAA+TGG | 0.357460 | 2_3:+55685024 | Msa0300340:three_prime_UTR |
GGTCTTGGATTTAATTGGTT+TGG | 0.375520 | 2_3:+55684921 | Msa0300340:three_prime_UTR |
GCGTAGTGTAACTTCATTGC+AGG | 0.377738 | 2_3:+55682411 | Msa0300340:CDS |
GGCCAACTTGGTGACATGTT+TGG | 0.381627 | 2_3:-55681354 | None:intergenic |
GACAATGTTATTGGTTGAAA+TGG | 0.385822 | 2_3:-55681415 | None:intergenic |
TCTGTTTGAGAATCACATAT+TGG | 0.388915 | 2_3:-55683896 | None:intergenic |
CCATCTTCTTGAGGTTCTGA+TGG | 0.391631 | 2_3:-55683832 | None:intergenic |
GAAGAATAAACAAGAGAAGA+AGG | 0.396694 | 2_3:+55681755 | Msa0300340:CDS |
ACCAATGCTTGATGATTGTC+GGG | 0.399558 | 2_3:+55681557 | Msa0300340:CDS |
AAGAAGATGGAAAATGCTAA+TGG | 0.406779 | 2_3:+55683845 | Msa0300340:CDS |
CCTTAACAACAACAAATTTG+AGG | 0.410672 | 2_3:+55681260 | Msa0300340:five_prime_UTR |
ATCAGAATCAGAACCCTTCA+TGG | 0.433073 | 2_3:+55681451 | Msa0300340:CDS |
ACCACACAAGGGAATGTTAG+AGG | 0.439664 | 2_3:-55681084 | None:intergenic |
GGAGATAGAAAGATTAAGAC+AGG | 0.441141 | 2_3:+55683802 | Msa0300340:CDS |
GCATTGTTGTTGTTACTTTG+AGG | 0.444336 | 2_3:-55681876 | None:intergenic |
TACAAAACTATATAACAAAC+AGG | 0.456508 | 2_3:-55681295 | None:intergenic |
CCCTCTAACATTCCCTTGTG+TGG | 0.457112 | 2_3:+55681083 | Msa0300340:five_prime_UTR |
CACCAATGCTTGATGATTGT+CGG | 0.462711 | 2_3:+55681556 | Msa0300340:CDS |
ATTAACATACAATGTATGAA+TGG | 0.472844 | 2_3:-55681171 | None:intergenic |
AATGTGGAGTGTGATGGATA+TGG | 0.473304 | 2_3:+55684867 | Msa0300340:three_prime_UTR |
CATCAGTGGCATCAAAAGAA+AGG | 0.482392 | 2_3:+55684643 | Msa0300340:CDS |
TTCTGATCTGAAGGACTCGA+AGG | 0.485897 | 2_3:-55681705 | None:intergenic |
GGTAGAAAGCCAATGCAAAC+AGG | 0.488493 | 2_3:+55681842 | Msa0300340:CDS |
CCATCAGAACCTCAAGAAGA+TGG | 0.490491 | 2_3:+55683832 | Msa0300340:CDS |
TTAACATACAATGTATGAAT+GGG | 0.503238 | 2_3:-55681170 | None:intergenic |
ATGTTTAGTGATGAAATATC+TGG | 0.505923 | 2_3:+55681645 | Msa0300340:CDS |
TGAAAAGCTTGTCTTGTGCA+AGG | 0.507196 | 2_3:-55682694 | None:intergenic |
TTATTGGTTGAAATGGATGT+TGG | 0.515770 | 2_3:-55681408 | None:intergenic |
TTGACAAAATTCTGATCTGA+AGG | 0.516864 | 2_3:-55681714 | None:intergenic |
CCCCGACAATCATCAAGCAT+TGG | 0.530465 | 2_3:-55681558 | None:intergenic |
TTTAGGAGAGATGAAGAAAG+AGG | 0.538946 | 2_3:+55681785 | Msa0300340:CDS |
AGGAACTCATCCACCCATGA+AGG | 0.539506 | 2_3:-55681465 | None:intergenic |
GAAAAGCTTGTCTTGTGCAA+GGG | 0.539760 | 2_3:-55682693 | None:intergenic |
ATATGGATAAAATGAAAGAA+AGG | 0.562865 | 2_3:+55684884 | Msa0300340:three_prime_UTR |
TCATCAAGAGGCACTGAAGA+GGG | 0.563124 | 2_3:+55683781 | Msa0300340:CDS |
CTGATCCAAAGAGAGTCAAA+AGG | 0.572655 | 2_3:+55681922 | Msa0300340:CDS |
ATCAGTGGCATCAAAAGAAA+GGG | 0.574757 | 2_3:+55684644 | Msa0300340:CDS |
TTCGATGAAGACAACGTTGG+TGG | 0.575587 | 2_3:-55681681 | None:intergenic |
TCCCAAACATGTCACCAAGT+TGG | 0.580152 | 2_3:+55681352 | Msa0300340:CDS |
GGGAAACACATGTGCATCAG+TGG | 0.585339 | 2_3:+55684629 | Msa0300340:intron |
AGATATTTCATCACTAAACA+TGG | 0.586033 | 2_3:-55681643 | None:intergenic |
AAAACAAAGACAATGGCTTG+TGG | 0.588542 | 2_3:+55684844 | Msa0300340:intron |
GACATGTTTGGGATCTTAGG+AGG | 0.588767 | 2_3:-55681342 | None:intergenic |
CTCATCAAGAGGCACTGAAG+AGG | 0.590175 | 2_3:+55683780 | Msa0300340:CDS |
TTGTGGAATGTGGAGTGTGA+TGG | 0.590221 | 2_3:+55684861 | Msa0300340:three_prime_UTR |
CAAGGCGAGGTGCTCATCGA+AGG | 0.594155 | 2_3:+55681502 | Msa0300340:CDS |
CCACACAAGGGAATGTTAGA+GGG | 0.594577 | 2_3:-55681083 | None:intergenic |
TTTACATGCAGCTCATCAAG+AGG | 0.601727 | 2_3:+55683769 | Msa0300340:intron |
GAATCAGAACCCTTCATGGG+TGG | 0.607660 | 2_3:+55681455 | Msa0300340:CDS |
ATTGAAATATGAACCTGATG+AGG | 0.608223 | 2_3:+55681821 | Msa0300340:CDS |
TCAGAATCAGAACCCTTCAT+GGG | 0.609308 | 2_3:+55681452 | Msa0300340:CDS |
TCTGATCTGAAGGACTCGAA+GGG | 0.610267 | 2_3:-55681704 | None:intergenic |
ATGAGCACCTCGCCTTGCCG+AGG | 0.614435 | 2_3:-55681496 | None:intergenic |
AGACAATGGCTTGTGGAATG+TGG | 0.619824 | 2_3:+55684851 | Msa0300340:intron |
GGAACTCATCCACCCATGAA+GGG | 0.626852 | 2_3:-55681464 | None:intergenic |
AGTGGCATCAAAAGAAAGGG+TGG | 0.627047 | 2_3:+55684647 | Msa0300340:CDS |
CAAATAGGCAATCAGCACAA+AGG | 0.647617 | 2_3:+55682350 | Msa0300340:CDS |
GCGAGGTGCTCATCGAAGGT+CGG | 0.657525 | 2_3:+55681506 | Msa0300340:CDS |
CAGCACAAAGGTCACGTGTG+AGG | 0.661809 | 2_3:+55682362 | Msa0300340:CDS |
GCCTTGCCGAGGAAAAGTCG+AGG | 0.688307 | 2_3:-55681485 | None:intergenic |
GATTGTCGGGGTAAACACGA+TGG | 0.708511 | 2_3:+55681570 | Msa0300340:CDS |
GGGTTCGATGAAGACAACGT+TGG | 0.721008 | 2_3:-55681684 | None:intergenic |
ATATTTCCAGAAACCACACA+AGG | 0.726763 | 2_3:-55681096 | None:intergenic |
CCAATGCTTGATGATTGTCG+GGG | 0.745183 | 2_3:+55681558 | Msa0300340:CDS |
TATTTCCAGAAACCACACAA+GGG | 0.750776 | 2_3:-55681095 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATAAAAAAAAAATGTTAA+AGG | - | chr2_3:55680928-55680947 | None:intergenic | 10.0% |
!!! | CTTTAACATTTTTTTTTTAT+AGG | + | chr2_3:55680926-55680945 | Msa0300340:five_prime_UTR | 10.0% |
!!! | TTTTGTTTTTTTAATTAACT+TGG | + | chr2_3:55681053-55681072 | Msa0300340:five_prime_UTR | 10.0% |
!!! | GTTTTATTAATAATAATTAC+TGG | + | chr2_3:55683635-55683654 | Msa0300340:intron | 10.0% |
!! | TGGAAATATACATATTTAAA+GGG | + | chr2_3:55681110-55681129 | Msa0300340:five_prime_UTR | 15.0% |
!! | AGATAAAAATTAAAACATGT+AGG | + | chr2_3:55681972-55681991 | Msa0300340:intron | 15.0% |
!! | ATGAAATGACAAAATAAAAA+TGG | + | chr2_3:55682849-55682868 | Msa0300340:intron | 15.0% |
!! | AGAATTAATATCAATATTGA+AGG | + | chr2_3:55683299-55683318 | Msa0300340:intron | 15.0% |
!! | ATATTTGAAAAATACTTAGT+TGG | - | chr2_3:55683500-55683519 | None:intergenic | 15.0% |
!! | TTTAAATCTGATAAGTAAAA+AGG | - | chr2_3:55683557-55683576 | None:intergenic | 15.0% |
!! | AATTAATGAAAAACAATGAT+TGG | - | chr2_3:55683661-55683680 | None:intergenic | 15.0% |
!! | CTAAATAGTATTAACTATTA+AGG | - | chr2_3:55683693-55683712 | None:intergenic | 15.0% |
!!! | ATTGCAGAATTTTTTTTATA+AGG | + | chr2_3:55684044-55684063 | Msa0300340:intron | 15.0% |
!! | TCTATATAGAAAAAATTGAA+TGG | + | chr2_3:55684719-55684738 | Msa0300340:intron | 15.0% |
!! | CTGGAAATATACATATTTAA+AGG | + | chr2_3:55681109-55681128 | Msa0300340:five_prime_UTR | 20.0% |
!! | TTAACATACAATGTATGAAT+GGG | - | chr2_3:55681173-55681192 | None:intergenic | 20.0% |
!! | ATTAACATACAATGTATGAA+TGG | - | chr2_3:55681174-55681193 | None:intergenic | 20.0% |
!! | TACAAAACTATATAACAAAC+AGG | - | chr2_3:55681298-55681317 | None:intergenic | 20.0% |
!!! | CATAATATTTTTTTGGTGTT+TGG | - | chr2_3:55681388-55681407 | None:intergenic | 20.0% |
!!! | ATGTTGGCATAATATTTTTT+TGG | - | chr2_3:55681395-55681414 | None:intergenic | 20.0% |
!! | AATTGAAATATTGTTGATCT+TGG | + | chr2_3:55682219-55682238 | Msa0300340:intron | 20.0% |
!! | AAATTTAATAAGAGTGAAAC+AGG | + | chr2_3:55682946-55682965 | Msa0300340:intron | 20.0% |
!! | TATATTAACTACTTTGTGAT+GGG | - | chr2_3:55683062-55683081 | None:intergenic | 20.0% |
!! | AAGTATTTGTACATTCTATT+TGG | - | chr2_3:55683473-55683492 | None:intergenic | 20.0% |
!!! | GTAAAATATCCATTTTGAAA+AGG | + | chr2_3:55684448-55684467 | Msa0300340:intron | 20.0% |
!!! | ATTTAGTTTCCTTTTCAAAA+TGG | - | chr2_3:55684460-55684479 | None:intergenic | 20.0% |
!! | ATATAGAAAAAATTGAATGG+AGG | + | chr2_3:55684722-55684741 | Msa0300340:intron | 20.0% |
!!! | TTTATCTTTTTCAATCCATT+TGG | + | chr2_3:55684820-55684839 | Msa0300340:intron | 20.0% |
!! | ATATGGATAAAATGAAAGAA+AGG | + | chr2_3:55684884-55684903 | Msa0300340:three_prime_UTR | 20.0% |
! | AGATATTTCATCACTAAACA+TGG | - | chr2_3:55681646-55681665 | None:intergenic | 25.0% |
! | ATGTTTAGTGATGAAATATC+TGG | + | chr2_3:55681645-55681664 | Msa0300340:CDS | 25.0% |
! | ACTAAAAAATTGTGTCATGT+GGG | - | chr2_3:55682113-55682132 | None:intergenic | 25.0% |
! | TACTAAAAAATTGTGTCATG+TGG | - | chr2_3:55682114-55682133 | None:intergenic | 25.0% |
!!! | GTTTTTTTGCATTAGAATCT+TGG | + | chr2_3:55682327-55682346 | Msa0300340:intron | 25.0% |
! | ATTTGCAGTACTATAATATC+TGG | + | chr2_3:55682481-55682500 | Msa0300340:intron | 25.0% |
! | ATATTAACTACTTTGTGATG+GGG | - | chr2_3:55683061-55683080 | None:intergenic | 25.0% |
! | GTATATTAACTACTTTGTGA+TGG | - | chr2_3:55683063-55683082 | None:intergenic | 25.0% |
!!! | CTCTTGAAATTTTGATACAT+AGG | - | chr2_3:55683162-55683181 | None:intergenic | 25.0% |
! | GTTAGTCAAAATAGTTTCTT+AGG | + | chr2_3:55683200-55683219 | Msa0300340:intron | 25.0% |
!! | AAGGAAAATGAGAGATTTTA+AGG | + | chr2_3:55684063-55684082 | Msa0300340:intron | 25.0% |
!!! | AAATGAGAGATTTTAAGGAA+AGG | + | chr2_3:55684068-55684087 | Msa0300340:intron | 25.0% |
!!! | AATGAGAGATTTTAAGGAAA+GGG | + | chr2_3:55684069-55684088 | Msa0300340:intron | 25.0% |
! | AAAATAGCGAACTTAAAACT+TGG | + | chr2_3:55684198-55684217 | Msa0300340:intron | 25.0% |
!!! | TGTGTTTTGCTTTAAAAGAA+AGG | + | chr2_3:55684575-55684594 | Msa0300340:intron | 25.0% |
!!! | GTGTTTTGCTTTAAAAGAAA+GGG | + | chr2_3:55684576-55684595 | Msa0300340:intron | 25.0% |
!!! | ATTGTCTTTGTTTTTCCAAA+TGG | - | chr2_3:55684838-55684857 | None:intergenic | 25.0% |
! | ATTTGGAAAAACAAAGACAA+TGG | + | chr2_3:55684837-55684856 | Msa0300340:intron | 25.0% |
! | AAATTGCGCTGTATATATAA+TGG | + | chr2_3:55685024-55685043 | Msa0300340:three_prime_UTR | 25.0% |
TATTTAAAGGGTTGTGTTAG+AGG | + | chr2_3:55681122-55681141 | Msa0300340:five_prime_UTR | 30.0% | |
!! | CCTCAAATTTGTTGTTGTTA+AGG | - | chr2_3:55681263-55681282 | None:intergenic | 30.0% |
CCTTAACAACAACAAATTTG+AGG | + | chr2_3:55681260-55681279 | Msa0300340:five_prime_UTR | 30.0% | |
! | TTTTGTACATCTCTCTCAAA+TGG | + | chr2_3:55681311-55681330 | Msa0300340:exon | 30.0% |
!!! | TTTTGGTGTTTGGAAAAATC+TGG | - | chr2_3:55681378-55681397 | None:intergenic | 30.0% |
! | TTATTGGTTGAAATGGATGT+TGG | - | chr2_3:55681411-55681430 | None:intergenic | 30.0% |
! | GACAATGTTATTGGTTGAAA+TGG | - | chr2_3:55681418-55681437 | None:intergenic | 30.0% |
GTTTGTAGTGACAATGTTAT+TGG | - | chr2_3:55681427-55681446 | None:intergenic | 30.0% | |
TTGACAAAATTCTGATCTGA+AGG | - | chr2_3:55681717-55681736 | None:intergenic | 30.0% | |
GAAGAATAAACAAGAGAAGA+AGG | + | chr2_3:55681755-55681774 | Msa0300340:CDS | 30.0% | |
GAGAAGAAGGAAAATGATTT+AGG | + | chr2_3:55681768-55681787 | Msa0300340:CDS | 30.0% | |
ATTGAAATATGAACCTGATG+AGG | + | chr2_3:55681821-55681840 | Msa0300340:CDS | 30.0% | |
!! | AATTACCTTTTGACTCTCTT+TGG | - | chr2_3:55681930-55681949 | None:intergenic | 30.0% |
TTCAATATTTGGACAGTAGA+AGG | - | chr2_3:55682575-55682594 | None:intergenic | 30.0% | |
TTCTACTGTCCAAATATTGA+AGG | + | chr2_3:55682574-55682593 | Msa0300340:intron | 30.0% | |
AAACTTCAGCCTTCAATATT+TGG | - | chr2_3:55682586-55682605 | None:intergenic | 30.0% | |
CAGTGCTATATATAGCTTAT+TGG | - | chr2_3:55682885-55682904 | None:intergenic | 30.0% | |
TATTAACTACTTTGTGATGG+GGG | - | chr2_3:55683060-55683079 | None:intergenic | 30.0% | |
AATCTACTAACATTTGAGCT+CGG | + | chr2_3:55683088-55683107 | Msa0300340:intron | 30.0% | |
ATTATTGTGCTTACTCGTTA+GGG | + | chr2_3:55683322-55683341 | Msa0300340:intron | 30.0% | |
TACTATTTAGACACATAGCT+AGG | + | chr2_3:55683703-55683722 | Msa0300340:intron | 30.0% | |
ACTATTTAGACACATAGCTA+GGG | + | chr2_3:55683704-55683723 | Msa0300340:intron | 30.0% | |
AAGAAGATGGAAAATGCTAA+TGG | + | chr2_3:55683845-55683864 | Msa0300340:CDS | 30.0% | |
TCTGTTTGAGAATCACATAT+TGG | - | chr2_3:55683899-55683918 | None:intergenic | 30.0% | |
AAGGAAAGGGAAAATAAATG+AGG | + | chr2_3:55684082-55684101 | Msa0300340:intron | 30.0% | |
AGGAAAGGGAAAATAAATGA+GGG | + | chr2_3:55684083-55684102 | Msa0300340:intron | 30.0% | |
ATTGTTTAATCTTACTCGCA+CGG | + | chr2_3:55684221-55684240 | Msa0300340:intron | 30.0% | |
TAGATATGACTGACAACATA+TGG | + | chr2_3:55684246-55684265 | Msa0300340:intron | 30.0% | |
ATAATCGACTGTAAATTCAG+CGG | - | chr2_3:55684375-55684394 | None:intergenic | 30.0% | |
!!! | ACTTGTTTTTATGCCACATT+TGG | - | chr2_3:55684428-55684447 | None:intergenic | 30.0% |
TAGTACTACTAGTACAAGTA+GGG | + | chr2_3:55684519-55684538 | Msa0300340:intron | 30.0% | |
! | TTTGAGGTCTTGGATTTAAT+TGG | + | chr2_3:55684916-55684935 | Msa0300340:three_prime_UTR | 30.0% |
TATTTCCAGAAACCACACAA+GGG | - | chr2_3:55681098-55681117 | None:intergenic | 35.0% | |
ATATTTCCAGAAACCACACA+AGG | - | chr2_3:55681099-55681118 | None:intergenic | 35.0% | |
TTTAGGAGAGATGAAGAAAG+AGG | + | chr2_3:55681785-55681804 | Msa0300340:CDS | 35.0% | |
! | GTGAATTTTCCTGTTTGCAT+TGG | - | chr2_3:55681854-55681873 | None:intergenic | 35.0% |
!! | GCATTGTTGTTGTTACTTTG+AGG | - | chr2_3:55681879-55681898 | None:intergenic | 35.0% |
GAATCAGTTGCAAAACTCAA+AGG | - | chr2_3:55682305-55682324 | None:intergenic | 35.0% | |
!! | TTGAGTTTTGCAACTGATTC+TGG | + | chr2_3:55682305-55682324 | Msa0300340:intron | 35.0% |
GCATTAGAATCTTGGCAAAT+AGG | + | chr2_3:55682335-55682354 | Msa0300340:intron | 35.0% | |
! | ATCTCCAAGAGTTGCATTTT+TGG | + | chr2_3:55682613-55682632 | Msa0300340:CDS | 35.0% |
TGATCCAAAAATGCAACTCT+TGG | - | chr2_3:55682620-55682639 | None:intergenic | 35.0% | |
! | CAAGACAAGCTTTTCAAAGA+TGG | + | chr2_3:55682701-55682720 | Msa0300340:CDS | 35.0% |
!! | ATTTCATGCTTGACTTGTCA+TGG | - | chr2_3:55682836-55682855 | None:intergenic | 35.0% |
ATCTACTAACATTTGAGCTC+GGG | + | chr2_3:55683089-55683108 | Msa0300340:intron | 35.0% | |
GATTATTGTGCTTACTCGTT+AGG | + | chr2_3:55683321-55683340 | Msa0300340:intron | 35.0% | |
TATGTTTGTGTGCGTTCAAA+TGG | - | chr2_3:55683365-55683384 | None:intergenic | 35.0% | |
AAAAGGAGCTAACTACTTTG+AGG | - | chr2_3:55683540-55683559 | None:intergenic | 35.0% | |
GGAGATAGAAAGATTAAGAC+AGG | + | chr2_3:55683802-55683821 | Msa0300340:CDS | 35.0% | |
! | TAGCATTTTCCATCTTCTTG+AGG | - | chr2_3:55683844-55683863 | None:intergenic | 35.0% |
!!! | ACATATTGGCTTTTGTGATG+GGG | - | chr2_3:55683885-55683904 | None:intergenic | 35.0% |
!!! | CACATATTGGCTTTTGTGAT+GGG | - | chr2_3:55683886-55683905 | None:intergenic | 35.0% |
!!! | TCACATATTGGCTTTTGTGA+TGG | - | chr2_3:55683887-55683906 | None:intergenic | 35.0% |
CACACGGTTACAATTACATA+AGG | - | chr2_3:55684134-55684153 | None:intergenic | 35.0% | |
AATAGAACATGAGTTGCATG+CGG | - | chr2_3:55684286-55684305 | None:intergenic | 35.0% | |
AGACCGTTCGATTAATCTAA+CGG | + | chr2_3:55684395-55684414 | Msa0300340:intron | 35.0% | |
AGACCGTTAGATTAATCGAA+CGG | - | chr2_3:55684401-55684420 | None:intergenic | 35.0% | |
TTTGAAGAGTCACACGTTAT+TGG | + | chr2_3:55684484-55684503 | Msa0300340:intron | 35.0% | |
TTGAAGAGTCACACGTTATT+GGG | + | chr2_3:55684485-55684504 | Msa0300340:intron | 35.0% | |
GTAGTACTACTAGTACAAGT+AGG | + | chr2_3:55684518-55684537 | Msa0300340:intron | 35.0% | |
ATCAGTGGCATCAAAAGAAA+GGG | + | chr2_3:55684644-55684663 | Msa0300340:CDS | 35.0% | |
AAAACAAAGACAATGGCTTG+TGG | + | chr2_3:55684844-55684863 | Msa0300340:intron | 35.0% | |
GGTCTTGGATTTAATTGGTT+TGG | + | chr2_3:55684921-55684940 | Msa0300340:three_prime_UTR | 35.0% | |
TTGGAAAAATCTGGCCAACT+TGG | - | chr2_3:55681369-55681388 | None:intergenic | 40.0% | |
ATCAGAATCAGAACCCTTCA+TGG | + | chr2_3:55681451-55681470 | Msa0300340:CDS | 40.0% | |
TCAGAATCAGAACCCTTCAT+GGG | + | chr2_3:55681452-55681471 | Msa0300340:CDS | 40.0% | |
! | CACCAATGCTTGATGATTGT+CGG | + | chr2_3:55681556-55681575 | Msa0300340:CDS | 40.0% |
! | ACCAATGCTTGATGATTGTC+GGG | + | chr2_3:55681557-55681576 | Msa0300340:CDS | 40.0% |
CTGATCCAAAGAGAGTCAAA+AGG | + | chr2_3:55681922-55681941 | Msa0300340:CDS | 40.0% | |
CAAATAGGCAATCAGCACAA+AGG | + | chr2_3:55682350-55682369 | Msa0300340:CDS | 40.0% | |
GAAAAGCTTGTCTTGTGCAA+GGG | - | chr2_3:55682696-55682715 | None:intergenic | 40.0% | |
TGAAAAGCTTGTCTTGTGCA+AGG | - | chr2_3:55682697-55682716 | None:intergenic | 40.0% | |
GTGAAAGAATATGTACCCTG+TGG | + | chr2_3:55682799-55682818 | Msa0300340:intron | 40.0% | |
! | TGACTTGTCATGGTCTCATT+AGG | - | chr2_3:55682826-55682845 | None:intergenic | 40.0% |
GCACTGTAGTTACTTGAAGT+TGG | + | chr2_3:55682899-55682918 | Msa0300340:intron | 40.0% | |
GTTGGTCAAGTATTCACTAG+TGG | + | chr2_3:55682917-55682936 | Msa0300340:intron | 40.0% | |
TGTGTGCAGTCTCATAACTA+TGG | - | chr2_3:55682973-55682992 | None:intergenic | 40.0% | |
GGGCACATGATCACATAAAT+AGG | - | chr2_3:55683040-55683059 | None:intergenic | 40.0% | |
TTTACATGCAGCTCATCAAG+AGG | + | chr2_3:55683769-55683788 | Msa0300340:intron | 40.0% | |
!! | TTTTGTGATGGGGATGGTAA+GGG | - | chr2_3:55683875-55683894 | None:intergenic | 40.0% |
GACTGACAACATATGGTTAG+AGG | + | chr2_3:55684253-55684272 | Msa0300340:intron | 40.0% | |
TAACGGTCTACAACCAAATG+TGG | + | chr2_3:55684412-55684431 | Msa0300340:intron | 40.0% | |
CCAATCATGCAAACTTTGAG+TGG | - | chr2_3:55684603-55684622 | None:intergenic | 40.0% | |
CCACTCAAAGTTTGCATGAT+TGG | + | chr2_3:55684600-55684619 | Msa0300340:intron | 40.0% | |
AGTTTGCATGATTGGAATGC+AGG | + | chr2_3:55684608-55684627 | Msa0300340:intron | 40.0% | |
GTTTGCATGATTGGAATGCA+GGG | + | chr2_3:55684609-55684628 | Msa0300340:intron | 40.0% | |
CATCAGTGGCATCAAAAGAA+AGG | + | chr2_3:55684643-55684662 | Msa0300340:CDS | 40.0% | |
!! | AATGTGGAGTGTGATGGATA+TGG | + | chr2_3:55684867-55684886 | Msa0300340:three_prime_UTR | 40.0% |
!! | AGAAAGGTGTGTCAGTTTTG+AGG | + | chr2_3:55684900-55684919 | Msa0300340:three_prime_UTR | 40.0% |
CCACACAAGGGAATGTTAGA+GGG | - | chr2_3:55681086-55681105 | None:intergenic | 45.0% | |
ACCACACAAGGGAATGTTAG+AGG | - | chr2_3:55681087-55681106 | None:intergenic | 45.0% | |
ACATTCCCTTGTGTGGTTTC+TGG | + | chr2_3:55681090-55681109 | Msa0300340:five_prime_UTR | 45.0% | |
! | GACATGTTTGGGATCTTAGG+AGG | - | chr2_3:55681345-55681364 | None:intergenic | 45.0% |
! | GGTGACATGTTTGGGATCTT+AGG | - | chr2_3:55681348-55681367 | None:intergenic | 45.0% |
TCCCAAACATGTCACCAAGT+TGG | + | chr2_3:55681352-55681371 | Msa0300340:CDS | 45.0% | |
! | GCCAACTTGGTGACATGTTT+GGG | - | chr2_3:55681356-55681375 | None:intergenic | 45.0% |
! | TGAGTTCCTCGACTTTTCCT+CGG | + | chr2_3:55681479-55681498 | Msa0300340:CDS | 45.0% |
! | CCAATGCTTGATGATTGTCG+GGG | + | chr2_3:55681558-55681577 | Msa0300340:CDS | 45.0% |
TTCGATGAAGACAACGTTGG+TGG | - | chr2_3:55681684-55681703 | None:intergenic | 45.0% | |
TCTGATCTGAAGGACTCGAA+GGG | - | chr2_3:55681707-55681726 | None:intergenic | 45.0% | |
TTCTGATCTGAAGGACTCGA+AGG | - | chr2_3:55681708-55681727 | None:intergenic | 45.0% | |
!! | CATTGGCTTTCTACCTCATC+AGG | - | chr2_3:55681837-55681856 | None:intergenic | 45.0% |
GGTAGAAAGCCAATGCAAAC+AGG | + | chr2_3:55681842-55681861 | Msa0300340:CDS | 45.0% | |
GCGTAGTGTAACTTCATTGC+AGG | + | chr2_3:55682411-55682430 | Msa0300340:CDS | 45.0% | |
ATGGTCTCATTAGGACCACA+GGG | - | chr2_3:55682817-55682836 | None:intergenic | 45.0% | |
!! | TCATCAAGAGGCACTGAAGA+GGG | + | chr2_3:55683781-55683800 | Msa0300340:CDS | 45.0% |
! | CCATCTTCTTGAGGTTCTGA+TGG | - | chr2_3:55683835-55683854 | None:intergenic | 45.0% |
CCATCAGAACCTCAAGAAGA+TGG | + | chr2_3:55683832-55683851 | Msa0300340:CDS | 45.0% | |
!! | CTTTTGTGATGGGGATGGTA+AGG | - | chr2_3:55683876-55683895 | None:intergenic | 45.0% |
!!! | ATTGGCTTTTGTGATGGGGA+TGG | - | chr2_3:55683881-55683900 | None:intergenic | 45.0% |
TGACAGACTGACTATGCACA+CGG | - | chr2_3:55684150-55684169 | None:intergenic | 45.0% | |
CATAGTCAGTCTGTCACATC+TGG | + | chr2_3:55684154-55684173 | Msa0300340:intron | 45.0% | |
AAGAGTCACACGTTATTGGG+TGG | + | chr2_3:55684488-55684507 | Msa0300340:intron | 45.0% | |
AGTGGCATCAAAAGAAAGGG+TGG | + | chr2_3:55684647-55684666 | Msa0300340:CDS | 45.0% | |
! | AGACAATGGCTTGTGGAATG+TGG | + | chr2_3:55684851-55684870 | Msa0300340:intron | 45.0% |
TTGTGGAATGTGGAGTGTGA+TGG | + | chr2_3:55684861-55684880 | Msa0300340:three_prime_UTR | 45.0% | |
!!! | GTGTGTCAGTTTTGAGGTCT+TGG | + | chr2_3:55684906-55684925 | Msa0300340:three_prime_UTR | 45.0% |
!! | TATAAAAAAAAAATGTTAAA+GGG | - | chr2_3:55680927-55680946 | None:intergenic | 5.0% |
!!! | ATTTTACTAAATTTTATTTA+GGG | - | chr2_3:55680963-55680982 | None:intergenic | 5.0% |
!!! | AATTTTACTAAATTTTATTT+AGG | - | chr2_3:55680964-55680983 | None:intergenic | 5.0% |
CCCTCTAACATTCCCTTGTG+TGG | + | chr2_3:55681083-55681102 | Msa0300340:five_prime_UTR | 50.0% | |
! | GGCCAACTTGGTGACATGTT+TGG | - | chr2_3:55681357-55681376 | None:intergenic | 50.0% |
GAATCAGAACCCTTCATGGG+TGG | + | chr2_3:55681455-55681474 | Msa0300340:CDS | 50.0% | |
GGAACTCATCCACCCATGAA+GGG | - | chr2_3:55681467-55681486 | None:intergenic | 50.0% | |
AGGAACTCATCCACCCATGA+AGG | - | chr2_3:55681468-55681487 | None:intergenic | 50.0% | |
CCCCGACAATCATCAAGCAT+TGG | - | chr2_3:55681561-55681580 | None:intergenic | 50.0% | |
GATTGTCGGGGTAAACACGA+TGG | + | chr2_3:55681570-55681589 | Msa0300340:CDS | 50.0% | |
GGGTTCGATGAAGACAACGT+TGG | - | chr2_3:55681687-55681706 | None:intergenic | 50.0% | |
CATGGTCTCATTAGGACCAC+AGG | - | chr2_3:55682818-55682837 | None:intergenic | 50.0% | |
!! | GGAGCTAACTACTTTGAGGC+AGG | - | chr2_3:55683536-55683555 | None:intergenic | 50.0% |
!! | CTCATCAAGAGGCACTGAAG+AGG | + | chr2_3:55683780-55683799 | Msa0300340:CDS | 50.0% |
TCACACGTTATTGGGTGGTG+AGG | + | chr2_3:55684493-55684512 | Msa0300340:intron | 50.0% | |
GGGAAACACATGTGCATCAG+TGG | + | chr2_3:55684629-55684648 | Msa0300340:intron | 50.0% | |
! | TCCTCGACTTTTCCTCGGCA+AGG | + | chr2_3:55681484-55681503 | Msa0300340:CDS | 55.0% |
CAGCACAAAGGTCACGTGTG+AGG | + | chr2_3:55682362-55682381 | Msa0300340:CDS | 55.0% | |
GCCTTGCCGAGGAAAAGTCG+AGG | - | chr2_3:55681488-55681507 | None:intergenic | 60.0% | |
! | GACTTTTCCTCGGCAAGGCG+AGG | + | chr2_3:55681489-55681508 | Msa0300340:CDS | 60.0% |
! | CAAGGCGAGGTGCTCATCGA+AGG | + | chr2_3:55681502-55681521 | Msa0300340:CDS | 60.0% |
! | GCGAGGTGCTCATCGAAGGT+CGG | + | chr2_3:55681506-55681525 | Msa0300340:CDS | 60.0% |
ATGAGCACCTCGCCTTGCCG+AGG | - | chr2_3:55681499-55681518 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 55680924 | 55685054 | 55680924 | ID=Msa0300340;Name=Msa0300340 |
chr2_3 | mRNA | 55680924 | 55685054 | 55680924 | ID=Msa0300340-mRNA-1;Parent=Msa0300340;Name=Msa0300340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=406|1|1|1|0.8|0.66|6|203|352 |
chr2_3 | exon | 55680924 | 55681943 | 55680924 | ID=Msa0300340-mRNA-1:exon:17777;Parent=Msa0300340-mRNA-1 |
chr2_3 | exon | 55682342 | 55682432 | 55682342 | ID=Msa0300340-mRNA-1:exon:17778;Parent=Msa0300340-mRNA-1 |
chr2_3 | exon | 55682596 | 55682722 | 55682596 | ID=Msa0300340-mRNA-1:exon:17779;Parent=Msa0300340-mRNA-1 |
chr2_3 | exon | 55683780 | 55683937 | 55683780 | ID=Msa0300340-mRNA-1:exon:17780;Parent=Msa0300340-mRNA-1 |
chr2_3 | exon | 55684630 | 55684699 | 55684630 | ID=Msa0300340-mRNA-1:exon:17781;Parent=Msa0300340-mRNA-1 |
chr2_3 | exon | 55684853 | 55685054 | 55684853 | ID=Msa0300340-mRNA-1:exon:17782;Parent=Msa0300340-mRNA-1 |
chr2_3 | five_prime_UTR | 55680924 | 55681329 | 55680924 | ID=Msa0300340-mRNA-1:five_prime_utr;Parent=Msa0300340-mRNA-1 |
chr2_3 | CDS | 55681330 | 55681943 | 55681330 | ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1 |
chr2_3 | CDS | 55682342 | 55682432 | 55682342 | ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1 |
chr2_3 | CDS | 55682596 | 55682722 | 55682596 | ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1 |
chr2_3 | CDS | 55683780 | 55683937 | 55683780 | ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1 |
chr2_3 | CDS | 55684630 | 55684698 | 55684630 | ID=Msa0300340-mRNA-1:cds;Parent=Msa0300340-mRNA-1 |
chr2_3 | three_prime_UTR | 55684699 | 55684699 | 55684699 | ID=Msa0300340-mRNA-1:three_prime_utr;Parent=Msa0300340-mRNA-1 |
chr2_3 | three_prime_UTR | 55684853 | 55685054 | 55684853 | ID=Msa0300340-mRNA-1:three_prime_utr;Parent=Msa0300340-mRNA-1 |
Gene Sequence |
Protein sequence |