Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338680 | XP_003597231.1 | 95.596 | 545 | 23 | 1 | 21 | 565 | 21 | 564 | 0.0 | 1016 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338680 | sp|Q9FF55|PDI14_ARATH | 69.884 | 518 | 144 | 3 | 59 | 565 | 81 | 597 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0221950 | Msa0338680 | 0.856369 | 3.370693e-62 | -8.615850e-47 |
| Msa0264420 | Msa0338680 | -0.807162 | 5.783314e-50 | -8.615850e-47 |
| Msa0338680 | Msa0339670 | -0.805089 | 1.579590e-49 | -8.615850e-47 |
| Msa0338680 | Msa1240060 | 0.834541 | 2.823301e-56 | -8.615850e-47 |
| Msa0338680 | Msa1281370 | 0.837497 | 5.019098e-57 | -8.615850e-47 |
| Msa0338680 | Msa1320530 | 0.840073 | 1.083033e-57 | -8.615850e-47 |
| Msa0338680 | Msa1427180 | -0.808933 | 2.427842e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338680 | MtrunA17_Chr2g0326581 | 95.596 | 545 | 23 | 1 | 21 | 565 | 21 | 564 | 0.0 | 1016 |
| Msa0338680 | MtrunA17_Chr4g0029181 | 72.261 | 566 | 138 | 4 | 14 | 565 | 23 | 583 | 0.0 | 790 |
| Msa0338680 | MtrunA17_Chr2g0331681 | 34.071 | 452 | 295 | 2 | 84 | 533 | 67 | 517 | 5.26e-95 | 300 |
| Msa0338680 | MtrunA17_Chr3g0124851 | 36.239 | 436 | 256 | 13 | 81 | 501 | 35 | 463 | 5.30e-75 | 247 |
| Msa0338680 | MtrunA17_Chr3g0124851 | 41.880 | 117 | 62 | 4 | 74 | 184 | 372 | 488 | 2.48e-17 | 85.1 |
| Msa0338680 | MtrunA17_Chr2g0326131 | 34.562 | 217 | 141 | 1 | 311 | 527 | 10 | 225 | 8.96e-44 | 155 |
| Msa0338680 | MtrunA17_Chr1g0200731 | 30.259 | 347 | 209 | 11 | 72 | 401 | 87 | 417 | 8.69e-25 | 107 |
| Msa0338680 | MtrunA17_Chr7g0271721 | 41.071 | 168 | 83 | 6 | 80 | 232 | 25 | 191 | 1.03e-23 | 102 |
| Msa0338680 | MtrunA17_Chr7g0271721 | 35.359 | 181 | 105 | 6 | 81 | 258 | 144 | 315 | 2.49e-18 | 86.7 |
| Msa0338680 | MtrunA17_Chr7g0271721 | 34.054 | 185 | 105 | 6 | 320 | 502 | 56 | 225 | 9.90e-17 | 82.0 |
| Msa0338680 | MtrunA17_Chr7g0271721 | 35.345 | 116 | 70 | 3 | 418 | 531 | 25 | 137 | 1.20e-14 | 75.5 |
| Msa0338680 | MtrunA17_Chr1g0194961 | 37.297 | 185 | 103 | 5 | 320 | 502 | 61 | 234 | 3.88e-23 | 101 |
| Msa0338680 | MtrunA17_Chr1g0194961 | 35.119 | 168 | 89 | 4 | 84 | 232 | 34 | 200 | 1.05e-20 | 94.0 |
| Msa0338680 | MtrunA17_Chr1g0194961 | 35.185 | 108 | 65 | 3 | 426 | 531 | 38 | 142 | 1.72e-13 | 72.4 |
| Msa0338680 | MtrunA17_Chr5g0438731 | 40.800 | 125 | 66 | 4 | 56 | 175 | 167 | 288 | 3.43e-18 | 87.4 |
| Msa0338680 | MtrunA17_Chr5g0438731 | 50.602 | 83 | 38 | 2 | 81 | 161 | 61 | 142 | 2.75e-16 | 81.6 |
| Msa0338680 | MtrunA17_Chr5g0438731 | 27.670 | 206 | 131 | 6 | 323 | 520 | 96 | 291 | 6.72e-13 | 70.9 |
| Msa0338680 | MtrunA17_Chr2g0287471 | 45.361 | 97 | 50 | 3 | 81 | 175 | 30 | 125 | 1.06e-13 | 72.8 |
| Msa0338680 | MtrunA17_Chr4g0041801 | 30.909 | 110 | 59 | 2 | 84 | 176 | 146 | 255 | 6.70e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0338680 | AT5G60640.1 | 69.884 | 518 | 144 | 3 | 59 | 565 | 81 | 597 | 0.0 | 756 |
| Msa0338680 | AT3G54960.1 | 60.457 | 569 | 203 | 7 | 12 | 565 | 18 | 579 | 0.0 | 689 |
| Msa0338680 | AT5G60640.2 | 70.953 | 451 | 129 | 1 | 59 | 507 | 81 | 531 | 0.0 | 684 |
| Msa0338680 | AT3G54960.2 | 59.796 | 490 | 181 | 4 | 12 | 486 | 18 | 506 | 0.0 | 603 |
| Msa0338680 | AT5G60640.3 | 56.371 | 518 | 150 | 7 | 59 | 565 | 81 | 533 | 0.0 | 563 |
| Msa0338680 | AT3G16110.1 | 34.633 | 436 | 281 | 3 | 78 | 510 | 74 | 508 | 9.79e-93 | 294 |
| Msa0338680 | AT1G52260.1 | 32.115 | 520 | 314 | 6 | 3 | 510 | 18 | 510 | 1.84e-91 | 291 |
| Msa0338680 | AT1G21750.2 | 39.316 | 468 | 248 | 19 | 81 | 526 | 32 | 485 | 1.28e-85 | 274 |
| Msa0338680 | AT1G21750.1 | 38.961 | 462 | 251 | 17 | 81 | 524 | 32 | 480 | 8.85e-85 | 273 |
| Msa0338680 | AT1G77510.1 | 36.566 | 495 | 273 | 19 | 81 | 553 | 31 | 506 | 7.52e-79 | 257 |
| Msa0338680 | AT1G77510.1 | 41.593 | 113 | 64 | 2 | 73 | 183 | 367 | 479 | 1.49e-16 | 83.2 |
| Msa0338680 | AT2G47470.2 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 3.10e-21 | 94.0 |
| Msa0338680 | AT2G47470.2 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 5.50e-21 | 93.6 |
| Msa0338680 | AT2G47470.2 | 33.333 | 111 | 67 | 3 | 432 | 540 | 37 | 142 | 3.73e-13 | 70.5 |
| Msa0338680 | AT2G47470.3 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 7.89e-21 | 94.4 |
| Msa0338680 | AT2G47470.3 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 1.01e-20 | 94.0 |
| Msa0338680 | AT2G47470.3 | 34.579 | 107 | 63 | 3 | 436 | 540 | 41 | 142 | 5.00e-13 | 70.9 |
| Msa0338680 | AT2G47470.4 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 9.27e-21 | 94.4 |
| Msa0338680 | AT2G47470.4 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 1.01e-20 | 94.0 |
| Msa0338680 | AT2G47470.4 | 34.579 | 107 | 63 | 3 | 436 | 540 | 41 | 142 | 3.86e-13 | 71.2 |
| Msa0338680 | AT2G47470.1 | 34.054 | 185 | 109 | 5 | 320 | 502 | 55 | 228 | 1.17e-20 | 94.4 |
| Msa0338680 | AT2G47470.1 | 31.169 | 231 | 117 | 8 | 84 | 284 | 28 | 246 | 1.56e-20 | 94.0 |
| Msa0338680 | AT2G47470.1 | 35.714 | 98 | 59 | 2 | 436 | 531 | 41 | 136 | 4.50e-13 | 71.2 |
| Msa0338680 | AT1G35620.1 | 28.829 | 222 | 136 | 7 | 81 | 291 | 34 | 244 | 1.18e-18 | 89.4 |
| Msa0338680 | AT1G04980.1 | 29.018 | 224 | 133 | 9 | 82 | 283 | 170 | 389 | 2.32e-17 | 85.1 |
| Msa0338680 | AT1G04980.1 | 44.330 | 97 | 51 | 3 | 81 | 175 | 34 | 129 | 1.63e-16 | 82.8 |
| Msa0338680 | AT1G04980.1 | 27.700 | 213 | 133 | 6 | 320 | 520 | 65 | 268 | 8.37e-15 | 77.4 |
| Msa0338680 | AT2G32920.1 | 46.465 | 99 | 45 | 4 | 82 | 175 | 165 | 260 | 3.33e-17 | 84.7 |
| Msa0338680 | AT2G32920.1 | 42.308 | 104 | 57 | 3 | 81 | 182 | 32 | 134 | 1.65e-16 | 82.4 |
| Msa0338680 | AT2G32920.1 | 27.670 | 206 | 133 | 5 | 323 | 520 | 66 | 263 | 1.35e-13 | 73.6 |
| Msa0338680 | AT4G27080.1 | 32.283 | 127 | 68 | 3 | 79 | 188 | 141 | 266 | 4.21e-13 | 72.0 |
| Msa0338680 | AT4G27080.2 | 32.283 | 127 | 68 | 3 | 79 | 188 | 193 | 318 | 5.46e-13 | 72.0 |
Find 135 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATGAGTATTTAGAATTT+TGG | 0.029623 | 2_4:-59090523 | Msa0338680:three_prime_UTR |
| ATCAAATAGCTTACACTTTC+AGG | 0.073604 | 2_4:+59091598 | None:intergenic |
| TAGGAGTTGAGGCTGGTTTC+TGG | 0.153170 | 2_4:+59090788 | None:intergenic |
| TTCTCATTGCGAATGAAATT+TGG | 0.187624 | 2_4:+59094548 | None:intergenic |
| AACTAAATACCCGAAATAAA+TGG | 0.200568 | 2_4:+59090475 | None:intergenic |
| GAAATTGCTCCCAGTATTTC+AGG | 0.203282 | 2_4:-59092508 | Msa0338680:CDS |
| GAAGAAAAGCTCAACCATTT+TGG | 0.206003 | 2_4:-59092888 | Msa0338680:intron |
| ACATCAGAGCTCTCTGATTT+AGG | 0.211013 | 2_4:+59090769 | None:intergenic |
| GTCGCAGCGGCGGCATATTC+TGG | 0.211215 | 2_4:+59094187 | None:intergenic |
| TTCTGAGACCAAAGTTGTTT+TGG | 0.212145 | 2_4:-59093825 | Msa0338680:CDS |
| TGCTCAGAAATTTGATGTTC+AGG | 0.255407 | 2_4:-59094104 | Msa0338680:CDS |
| TAGCTTACACTTTCAGGAAT+TGG | 0.267348 | 2_4:+59091604 | None:intergenic |
| ATAATTACCTGTTTCTTGAT+TGG | 0.283200 | 2_4:+59092671 | None:intergenic |
| TTGAAAAGCTTTGCAACTTC+AGG | 0.285270 | 2_4:+59092960 | None:intergenic |
| TTTGATGCTTCCTGAAATAC+TGG | 0.295344 | 2_4:+59092498 | None:intergenic |
| GTTGCTACTTTGGTTCTCTT+TGG | 0.295651 | 2_4:+59090729 | None:intergenic |
| TATACATAACATTACTTCAT+TGG | 0.319759 | 2_4:-59093870 | Msa0338680:CDS |
| GTGGTGGTTTCACCAGCTTC+TGG | 0.328568 | 2_4:+59094421 | None:intergenic |
| AGAAATTAAACAAACCAAAA+TGG | 0.339530 | 2_4:+59092874 | None:intergenic |
| CTGCTTGAGGAACTTGTAAA+AGG | 0.346354 | 2_4:+59090834 | None:intergenic |
| AGCTTACACTTTCAGGAATT+GGG | 0.357347 | 2_4:+59091605 | None:intergenic |
| GCTGGTTTCTGGAGCTTGAA+TGG | 0.364344 | 2_4:+59090799 | None:intergenic |
| ACTAAATACCCGAAATAAAT+GGG | 0.365943 | 2_4:+59090476 | None:intergenic |
| GGTGACTATTGACAGAATTA+AGG | 0.380026 | 2_4:-59091818 | Msa0338680:intron |
| CTGGTTTCTGGAGCTTGAAT+GGG | 0.380359 | 2_4:+59090800 | None:intergenic |
| CTCCTCCAACAAGATTCCTT+TGG | 0.388801 | 2_4:-59092738 | Msa0338680:CDS |
| AAGGATCAACGCAGGGCGTT+TGG | 0.389545 | 2_4:+59092923 | None:intergenic |
| TGAAAATCCAATCAAGAAAC+AGG | 0.402093 | 2_4:-59092678 | Msa0338680:intron |
| TGACATCGCTGTTGCTACTT+TGG | 0.410750 | 2_4:+59090719 | None:intergenic |
| AGAGAAGAGTTGTGAGAGAA+AGG | 0.416222 | 2_4:+59094515 | None:intergenic |
| TTTGCAAGCTTGTTGTATAT+CGG | 0.417814 | 2_4:+59091293 | None:intergenic |
| AGTTTCTGAATCTTCGTAAC+CGG | 0.422776 | 2_4:+59094345 | None:intergenic |
| CGCCGCTGCGACGGAATTGA+AGG | 0.429963 | 2_4:-59094176 | Msa0338680:CDS |
| ATTTGGGTTTACCTTTGCCC+TGG | 0.431662 | 2_4:+59091208 | None:intergenic |
| ATACCGAAGTAATCTGAAAC+AGG | 0.440539 | 2_4:+59092037 | None:intergenic |
| GTGTGGCCATTGCCAACATT+TGG | 0.443950 | 2_4:-59091318 | Msa0338680:CDS |
| TCAGATTACTTCGGTATTAG+TGG | 0.447352 | 2_4:-59092031 | Msa0338680:CDS |
| TGTTACCAAAGGAATCTTGT+TGG | 0.449876 | 2_4:+59092733 | None:intergenic |
| CTTGGGGAGAGAAGAATTAG+TGG | 0.450627 | 2_4:+59090610 | None:intergenic |
| GAGAAAACCCAAAACAACTT+TGG | 0.451359 | 2_4:+59093817 | None:intergenic |
| GTGTGACTGTGATGTGAGAA+TGG | 0.452679 | 2_4:+59094637 | None:intergenic |
| CAACTTCAGGATCCACAGTC+TGG | 0.454592 | 2_4:+59092973 | None:intergenic |
| GGAAGAAAATTTGTGTTTGA+AGG | 0.454888 | 2_4:-59091844 | Msa0338680:CDS |
| GCAGCTAGCTCCTCACTCTC+AGG | 0.456501 | 2_4:+59093029 | None:intergenic |
| TCAATGAAGAAAAGAATAGT+AGG | 0.456548 | 2_4:+59094076 | None:intergenic |
| CGGAATCATCGCCGTGGTGG+TGG | 0.460227 | 2_4:+59094392 | None:intergenic |
| GCTCAGAAATTTGATGTTCA+GGG | 0.464833 | 2_4:-59094103 | Msa0338680:CDS |
| GGAAGCATCAAAGTCTTTCA+AGG | 0.466842 | 2_4:-59092487 | Msa0338680:CDS |
| TTCGTCATCGAGTTCGTTTG+AGG | 0.471369 | 2_4:+59094465 | None:intergenic |
| GTGGTGGTGGTGTGTGGTGG+TGG | 0.471773 | 2_4:+59094405 | None:intergenic |
| GAGTTCGTTTGAGGAGAGAA+TGG | 0.472106 | 2_4:+59094474 | None:intergenic |
| TGTATATCGGTTCCAAATGT+TGG | 0.475373 | 2_4:+59091306 | None:intergenic |
| ATGTTCACTTTGCAGTCTGA+TGG | 0.480322 | 2_4:-59091082 | Msa0338680:intron |
| GGAGAGAATGGGAGAGATGG+AGG | 0.481699 | 2_4:+59094486 | None:intergenic |
| TGAGGAGAGAATGGGAGAGA+TGG | 0.485377 | 2_4:+59094483 | None:intergenic |
| AAAATTTGTGTTTGAAGGAG+AGG | 0.487863 | 2_4:-59091839 | Msa0338680:CDS |
| ACTCTTCTCTTCTTCCCAGC+AGG | 0.489317 | 2_4:-59091052 | Msa0338680:CDS |
| TTTGGGTTTACCTTTGCCCT+GGG | 0.490545 | 2_4:+59091209 | None:intergenic |
| CTCTCTTGTAATAGCCAAGA+TGG | 0.503883 | 2_4:-59091252 | Msa0338680:CDS |
| CAAGCCTATAAAAGAGGTAA+AGG | 0.505464 | 2_4:-59090591 | Msa0338680:three_prime_UTR |
| TTTCTTCCTCTTTCTTGACA+AGG | 0.508368 | 2_4:+59092904 | None:intergenic |
| TCTGATTTAGGAGTTGAGGC+TGG | 0.514207 | 2_4:+59090781 | None:intergenic |
| CAGATTACTTCGGTATTAGT+GGG | 0.514292 | 2_4:-59092030 | Msa0338680:CDS |
| GAACACAAAATGAGCATCCC+AGG | 0.515907 | 2_4:-59091226 | Msa0338680:CDS |
| ATCAAAGTCTTTCAAGGGAA+AGG | 0.517288 | 2_4:-59092481 | Msa0338680:intron |
| GGTGATGTGAAAATAGTTGT+TGG | 0.517934 | 2_4:-59091499 | Msa0338680:CDS |
| TGTGACTGTGATGTGAGAAT+GGG | 0.522518 | 2_4:+59094638 | None:intergenic |
| ACCACCACACACCACCACCA+CGG | 0.523167 | 2_4:-59094403 | Msa0338680:CDS |
| CTTCAATTCCGTCGCAGCGG+CGG | 0.523787 | 2_4:+59094177 | None:intergenic |
| AGAATTCGACTAAAACGAAT+CGG | 0.526308 | 2_4:+59094245 | None:intergenic |
| TCTCCCCAAGCCTATAAAAG+AGG | 0.526504 | 2_4:-59090597 | Msa0338680:three_prime_UTR |
| AGTTCGTTTGAGGAGAGAAT+GGG | 0.532275 | 2_4:+59094475 | None:intergenic |
| TTAACTCGGCGACAGAATGA+TGG | 0.534871 | 2_4:-59091520 | Msa0338680:intron |
| ACATGGATTAAGAAGAAGAC+TGG | 0.536124 | 2_4:-59093899 | Msa0338680:CDS |
| ATCATCTTCGAGATCGGCGT+CGG | 0.539745 | 2_4:+59094372 | None:intergenic |
| AATATCAGATATATGCTCCT+TGG | 0.540524 | 2_4:-59091340 | Msa0338680:intron |
| ATCAGAGAGCTCTGATGTCA+AGG | 0.545354 | 2_4:-59090764 | Msa0338680:CDS |
| GCATACACCGGAAACGATGA+TGG | 0.546485 | 2_4:-59091865 | Msa0338680:CDS |
| GCAGTTGATCTTTGTGCTTG+TGG | 0.546998 | 2_4:-59092086 | Msa0338680:intron |
| TACCAAAGGAATCTTGTTGG+AGG | 0.552032 | 2_4:+59092736 | None:intergenic |
| GAAACTGATAACGAAGATGT+TGG | 0.553749 | 2_4:-59092064 | Msa0338680:CDS |
| GATCTCGAAGATGATTTCTC+CGG | 0.556140 | 2_4:-59094364 | Msa0338680:CDS |
| AGAATATGCCGCCGCTGCGA+CGG | 0.557120 | 2_4:-59094185 | Msa0338680:CDS |
| AGCAACTTCATTATCTTCAG+TGG | 0.558524 | 2_4:+59094123 | None:intergenic |
| GCTGGGAAGAAGAGAAGAGT+GGG | 0.561355 | 2_4:+59091055 | None:intergenic |
| AATTGTCTTGGATGAGTCAA+AGG | 0.563831 | 2_4:-59091461 | Msa0338680:CDS |
| GCCGTGGTGGTGGTGTGTGG+TGG | 0.565946 | 2_4:+59094402 | None:intergenic |
| TTCCTCGACGAACCAGAAGC+TGG | 0.565959 | 2_4:-59094433 | Msa0338680:CDS |
| GCTCTCTGATTTAGGAGTTG+AGG | 0.567708 | 2_4:+59090777 | None:intergenic |
| AGCTGCGGCTTCACGTCTTG+AGG | 0.570216 | 2_4:-59093012 | Msa0338680:CDS |
| AAGCCTGTTTCAGATTACTT+CGG | 0.573742 | 2_4:-59092040 | Msa0338680:CDS |
| GTTGATCCTTGTCAAGAAAG+AGG | 0.574493 | 2_4:-59092910 | Msa0338680:CDS |
| TTCTTGACAAGGATCAACGC+AGG | 0.576510 | 2_4:+59092915 | None:intergenic |
| GCCTATAAAAGAGGTAAAGG+AGG | 0.577629 | 2_4:-59090588 | Msa0338680:three_prime_UTR |
| AGCATAGATTATTATTTGCG+AGG | 0.578132 | 2_4:+59090445 | None:intergenic |
| CAGATATATGCTCCTTGGTG+TGG | 0.578248 | 2_4:-59091335 | Msa0338680:CDS |
| GGAAAAGGTGGACAAATGCA+AGG | 0.582240 | 2_4:-59090564 | Msa0338680:three_prime_UTR |
| GGAGAAATCATCTTCGAGAT+CGG | 0.588324 | 2_4:+59094366 | None:intergenic |
| AAGTAGCAACAGCGATGTCA+AGG | 0.589607 | 2_4:-59090716 | Msa0338680:CDS |
| TCGGTTCCAAATGTTGGCAA+TGG | 0.589689 | 2_4:+59091312 | None:intergenic |
| ATCGCCGTGGTGGTGGTGTG+TGG | 0.590102 | 2_4:+59094399 | None:intergenic |
| CACCAGCTTCTGGTTCGTCG+AGG | 0.592591 | 2_4:+59094431 | None:intergenic |
| GGATTGATGCATGCTGCTTG+AGG | 0.593443 | 2_4:+59090821 | None:intergenic |
| GGTGTTCATAAGAGTTACAC+TGG | 0.600709 | 2_4:-59094052 | Msa0338680:CDS |
| AAATGAGCATCCCAGGGCAA+AGG | 0.601467 | 2_4:-59091219 | Msa0338680:intron |
| GTCAAAGGACGTTCTCCTTG+AGG | 0.604589 | 2_4:-59091446 | Msa0338680:intron |
| TATGTAGGGTCCTGAGAGTG+AGG | 0.607409 | 2_4:-59093039 | Msa0338680:intron |
| GCCGCTGCGACGGAATTGAA+GGG | 0.607410 | 2_4:-59094175 | Msa0338680:CDS |
| ATTAAGAAGAAGACTGGACC+TGG | 0.609346 | 2_4:-59093893 | Msa0338680:CDS |
| TATAAAAGAGGTAAAGGAGG+GGG | 0.611289 | 2_4:-59090585 | Msa0338680:three_prime_UTR |
| CGAAACGAAGAAAGAAACAG+AGG | 0.612151 | 2_4:+59094578 | None:intergenic |
| GAAGTAATGTTATGTATACC+AGG | 0.613032 | 2_4:+59093875 | None:intergenic |
| ACCCTTCAATTCCGTCGCAG+CGG | 0.618790 | 2_4:+59094174 | None:intergenic |
| CCTATAAAAGAGGTAAAGGA+GGG | 0.618833 | 2_4:-59090587 | Msa0338680:three_prime_UTR |
| GTGTGGTCATTGTCAAGCAT+TGG | 0.618986 | 2_4:-59094212 | Msa0338680:CDS |
| GAAGCATCAAAGTCTTTCAA+GGG | 0.619244 | 2_4:-59092486 | Msa0338680:CDS |
| ATAGATTATTATTTGCGAGG+AGG | 0.621902 | 2_4:+59090448 | None:intergenic |
| TGCTGGGAAGAAGAGAAGAG+TGG | 0.622841 | 2_4:+59091054 | None:intergenic |
| CGTCGGAATCATCGCCGTGG+TGG | 0.624569 | 2_4:+59094389 | None:intergenic |
| GAATTCTACGCACCATGGTG+TGG | 0.628556 | 2_4:-59094229 | Msa0338680:CDS |
| CAAGAGAGTCAATACTGCGA+AGG | 0.629198 | 2_4:+59091267 | None:intergenic |
| TCTTGACAAGGATCAACGCA+GGG | 0.634558 | 2_4:+59092916 | None:intergenic |
| CTTGTAATAGCCAAGATGGA+CGG | 0.635238 | 2_4:-59091248 | Msa0338680:CDS |
| TAGTCGAATTCTACGCACCA+TGG | 0.639660 | 2_4:-59094234 | Msa0338680:CDS |
| TTGATGCTTCCTGAAATACT+GGG | 0.651591 | 2_4:+59092499 | None:intergenic |
| CTAAATACCCGAAATAAATG+GGG | 0.657950 | 2_4:+59090477 | None:intergenic |
| AACACAAAATGAGCATCCCA+GGG | 0.664470 | 2_4:-59091225 | Msa0338680:CDS |
| CTATAAAAGAGGTAAAGGAG+GGG | 0.680940 | 2_4:-59090586 | Msa0338680:three_prime_UTR |
| TGTTGGCAATGGCCACACCA+AGG | 0.684405 | 2_4:+59091323 | None:intergenic |
| CGGCGTCGGAATCATCGCCG+TGG | 0.685072 | 2_4:+59094386 | None:intergenic |
| GCAGAGAAGCTATTGTGACA+TGG | 0.687793 | 2_4:-59093916 | Msa0338680:intron |
| TGAGAGTGAGGAGCTAGCTG+CGG | 0.699295 | 2_4:-59093027 | Msa0338680:CDS |
| ATGCAGGTACTTGCATACAC+CGG | 0.700002 | 2_4:-59091877 | Msa0338680:intron |
| CTGGGAAGAAGAGAAGAGTG+GGG | 0.702683 | 2_4:+59091056 | None:intergenic |
| GCTTGACAATGACCACACCA+TGG | 0.739924 | 2_4:+59094217 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAATTTTATTCAATTTT+TGG | - | chr2_4:59091064-59091083 | Msa0338680:CDS | 10.0% |
| !! | AATGAGATTATATTATAATA+AGG | + | chr2_4:59092410-59092429 | None:intergenic | 10.0% |
| !! | TTATTATAATATAATCTCAT+TGG | - | chr2_4:59092409-59092428 | Msa0338680:intron | 10.0% |
| !!! | GAAAAATAAATAATTACTTT+TGG | + | chr2_4:59093045-59093064 | None:intergenic | 10.0% |
| !! | ATCTTGTATTGTTAATTTAA+TGG | - | chr2_4:59093673-59093692 | Msa0338680:intron | 15.0% |
| !! | TATACATAACATTACTTCAT+TGG | - | chr2_4:59091173-59091192 | Msa0338680:intron | 20.0% |
| !! | AGAAATTAAACAAACCAAAA+TGG | + | chr2_4:59092172-59092191 | None:intergenic | 20.0% |
| !!! | ATTACATCTTTTGAATAACT+TGG | - | chr2_4:59093112-59093131 | Msa0338680:intron | 20.0% |
| !! | AGTTAACAAAACATAATTGA+TGG | + | chr2_4:59093478-59093497 | None:intergenic | 20.0% |
| !!! | TCAATTATGTTTTGTTAACT+TGG | - | chr2_4:59093478-59093497 | Msa0338680:intron | 20.0% |
| !! | AATATAACTGGTAAAATAGA+GGG | + | chr2_4:59093634-59093653 | None:intergenic | 20.0% |
| !! | AAATATAACTGGTAAAATAG+AGG | + | chr2_4:59093635-59093654 | None:intergenic | 20.0% |
| !! | TGTATTGTTAATTTAATGGT+TGG | - | chr2_4:59093677-59093696 | Msa0338680:intron | 20.0% |
| !! | AAGATTGATCAATAAGTTAT+TGG | + | chr2_4:59093935-59093954 | None:intergenic | 20.0% |
| !!! | TCATGAGTATTTAGAATTTT+GGG | - | chr2_4:59094521-59094540 | Msa0338680:CDS | 20.0% |
| !! | AAAAAAATCCCCATTTATTT+CGG | - | chr2_4:59094558-59094577 | Msa0338680:five_prime_UTR | 20.0% |
| ! | TCAATGAAGAAAAGAATAGT+AGG | + | chr2_4:59090970-59090989 | None:intergenic | 25.0% |
| !! | ACTATTCTTTTCTTCATTGA+TGG | - | chr2_4:59090970-59090989 | Msa0338680:intron | 25.0% |
| !!! | GGTTATATGTTGATTTTAAG+TGG | - | chr2_4:59091577-59091596 | Msa0338680:intron | 25.0% |
| ! | AAGGAAGAAAGTTTAATCTT+TGG | - | chr2_4:59091705-59091724 | Msa0338680:intron | 25.0% |
| ! | TGCATACAAATTTAAACCTT+CGG | - | chr2_4:59091753-59091772 | Msa0338680:intron | 25.0% |
| ! | ATTAGCAAATCATAACGAAT+AGG | + | chr2_4:59091819-59091838 | None:intergenic | 25.0% |
| !!! | AATTTGTTTTTCGATGAAGT+TGG | - | chr2_4:59091892-59091911 | Msa0338680:intron | 25.0% |
| !! | ATTGGATTTTCAAAGATTGT+TGG | + | chr2_4:59092357-59092376 | None:intergenic | 25.0% |
| !! | ATAATTACCTGTTTCTTGAT+TGG | + | chr2_4:59092375-59092394 | None:intergenic | 25.0% |
| !!! | ATGTTTGAAACTTCTTTTTC+AGG | - | chr2_4:59092481-59092500 | Msa0338680:intron | 25.0% |
| !!! | ACTTTCATCTTGTCATTTTT+TGG | - | chr2_4:59092613-59092632 | Msa0338680:intron | 25.0% |
| !!! | CTTTCATCTTGTCATTTTTT+GGG | - | chr2_4:59092614-59092633 | Msa0338680:intron | 25.0% |
| !! | TGATTTTATAAACAGAAGCA+TGG | + | chr2_4:59092756-59092775 | None:intergenic | 25.0% |
| ! | GTATCATCAAATTGAACAAA+GGG | + | chr2_4:59093067-59093086 | None:intergenic | 25.0% |
| ! | CCTCATTAAATGAAAGAAAA+AGG | + | chr2_4:59093317-59093336 | None:intergenic | 25.0% |
| !! | CCTTTTTCTTTCATTTAATG+AGG | - | chr2_4:59093314-59093333 | Msa0338680:intron | 25.0% |
| !! | TCAAATCTTCATTTTATCTC+AGG | - | chr2_4:59093363-59093382 | Msa0338680:intron | 25.0% |
| ! | AAAGTGTAAGCTATTTGATT+TGG | - | chr2_4:59093449-59093468 | Msa0338680:intron | 25.0% |
| !!! | CAATTTTGATGAAATTGTCT+TGG | - | chr2_4:59093570-59093589 | Msa0338680:intron | 25.0% |
| ! | ATTAGAGATGCAAATATAAC+TGG | + | chr2_4:59093646-59093665 | None:intergenic | 25.0% |
| ! | ATTGTTAATTTAATGGTTGG+TGG | - | chr2_4:59093680-59093699 | Msa0338680:intron | 25.0% |
| ! | ATTGCTTAATATTCACTTAC+AGG | + | chr2_4:59094033-59094052 | None:intergenic | 25.0% |
| !! | TTTTCTATAAGTCACTATGT+CGG | + | chr2_4:59094410-59094429 | None:intergenic | 25.0% |
| !!! | CTCATGAGTATTTAGAATTT+TGG | - | chr2_4:59094520-59094539 | Msa0338680:CDS | 25.0% |
| !!! | CATGAGTATTTAGAATTTTG+GGG | - | chr2_4:59094522-59094541 | Msa0338680:CDS | 25.0% |
| ! | AAAAAATCCCCATTTATTTC+GGG | - | chr2_4:59094559-59094578 | Msa0338680:five_prime_UTR | 25.0% |
| ! | ACTAAATACCCGAAATAAAT+GGG | + | chr2_4:59094570-59094589 | None:intergenic | 25.0% |
| ! | AACTAAATACCCGAAATAAA+TGG | + | chr2_4:59094571-59094590 | None:intergenic | 25.0% |
| TTCTCATTGCGAATGAAATT+TGG | + | chr2_4:59090498-59090517 | None:intergenic | 30.0% | |
| AGAATTCGACTAAAACGAAT+CGG | + | chr2_4:59090801-59090820 | None:intergenic | 30.0% | |
| GAAGTAATGTTATGTATACC+AGG | + | chr2_4:59091171-59091190 | None:intergenic | 30.0% | |
| AAGTTATATGCTATGAAGCA+CGG | - | chr2_4:59091406-59091425 | Msa0338680:intron | 30.0% | |
| GAATGTAGTTAAATGTGTCT+TGG | - | chr2_4:59091481-59091500 | Msa0338680:CDS | 30.0% | |
| !! | ATTCGTAGATGGATTATCTA+TGG | + | chr2_4:59091653-59091672 | None:intergenic | 30.0% |
| GAAAGTTTAATCTTTGGACT+TGG | - | chr2_4:59091711-59091730 | Msa0338680:intron | 30.0% | |
| ! | TATCGAATTTTCCATCTGTA+AGG | + | chr2_4:59092263-59092282 | None:intergenic | 30.0% |
| CTTGTAAAAACTGTTACCAA+AGG | + | chr2_4:59092324-59092343 | None:intergenic | 30.0% | |
| TGAAAATCCAATCAAGAAAC+AGG | - | chr2_4:59092365-59092384 | Msa0338680:intron | 30.0% | |
| CGTATCATCAAATTGAACAA+AGG | + | chr2_4:59093068-59093087 | None:intergenic | 30.0% | |
| GGAAGAAAATTTGTGTTTGA+AGG | - | chr2_4:59093199-59093218 | Msa0338680:intron | 30.0% | |
| AAAATTTGTGTTTGAAGGAG+AGG | - | chr2_4:59093204-59093223 | Msa0338680:intron | 30.0% | |
| ATCATACACATTCTGTAACA+TGG | + | chr2_4:59093292-59093311 | None:intergenic | 30.0% | |
| ! | TTCATTTTATCTCAGGCATT+TGG | - | chr2_4:59093370-59093389 | Msa0338680:intron | 30.0% |
| ! | TCATTTTATCTCAGGCATTT+GGG | - | chr2_4:59093371-59093390 | Msa0338680:intron | 30.0% |
| ATCAAATAGCTTACACTTTC+AGG | + | chr2_4:59093448-59093467 | None:intergenic | 30.0% | |
| ! | GTCTAACATGTTTGTTAACT+CGG | - | chr2_4:59093509-59093528 | Msa0338680:intron | 30.0% |
| AATATCAGATATATGCTCCT+TGG | - | chr2_4:59093703-59093722 | Msa0338680:intron | 30.0% | |
| !! | TTTGCAAGCTTGTTGTATAT+CGG | + | chr2_4:59093753-59093772 | None:intergenic | 30.0% |
| ! | GCAATGTCTAGTTTGAATTT+GGG | + | chr2_4:59093854-59093873 | None:intergenic | 30.0% |
| ! | AGCAATGTCTAGTTTGAATT+TGG | + | chr2_4:59093855-59093874 | None:intergenic | 30.0% |
| ATCAATAAGTTATTGGATGC+AGG | + | chr2_4:59093928-59093947 | None:intergenic | 30.0% | |
| ! | TTTACCTCTTTTATAGGCTT+GGG | + | chr2_4:59094453-59094472 | None:intergenic | 30.0% |
| CTAAATACCCGAAATAAATG+GGG | + | chr2_4:59094569-59094588 | None:intergenic | 30.0% | |
| ATAGATTATTATTTGCGAGG+AGG | + | chr2_4:59094598-59094617 | None:intergenic | 30.0% | |
| AGCATAGATTATTATTTGCG+AGG | + | chr2_4:59094601-59094620 | None:intergenic | 30.0% | |
| AGTTTCTGAATCTTCGTAAC+CGG | + | chr2_4:59090701-59090720 | None:intergenic | 35.0% | |
| AGCAACTTCATTATCTTCAG+TGG | + | chr2_4:59090923-59090942 | None:intergenic | 35.0% | |
| TGCTCAGAAATTTGATGTTC+AGG | - | chr2_4:59090939-59090958 | Msa0338680:intron | 35.0% | |
| GCTCAGAAATTTGATGTTCA+GGG | - | chr2_4:59090940-59090959 | Msa0338680:intron | 35.0% | |
| ! | ACATGGATTAAGAAGAAGAC+TGG | - | chr2_4:59091144-59091163 | Msa0338680:intron | 35.0% |
| !!! | TTCTGAGACCAAAGTTGTTT+TGG | - | chr2_4:59091218-59091237 | Msa0338680:intron | 35.0% |
| !! | TCTGAGACCAAAGTTGTTTT+GGG | - | chr2_4:59091219-59091238 | Msa0338680:intron | 35.0% |
| GAGAAAACCCAAAACAACTT+TGG | + | chr2_4:59091229-59091248 | None:intergenic | 35.0% | |
| !! | AGAAGTGTAGCTTTGTTTCT+TGG | - | chr2_4:59091378-59091397 | Msa0338680:intron | 35.0% |
| GTATTCTTGGAATTCGTAGA+TGG | + | chr2_4:59091664-59091683 | None:intergenic | 35.0% | |
| ! | ACGTGTCATGGTGTTAATTA+AGG | - | chr2_4:59091686-59091705 | Msa0338680:intron | 35.0% |
| AGTTTAATCTTTGGACTTGG+CGG | - | chr2_4:59091714-59091733 | Msa0338680:intron | 35.0% | |
| !!! | TTAAACCTTCGGTGTTTTCA+TGG | - | chr2_4:59091764-59091783 | Msa0338680:intron | 35.0% |
| !!! | TAAACCTTCGGTGTTTTCAT+GGG | - | chr2_4:59091765-59091784 | Msa0338680:intron | 35.0% |
| TCGATGAAGTTGGCAATTAA+AGG | - | chr2_4:59091902-59091921 | Msa0338680:intron | 35.0% | |
| TCCTGTTATGCACAATATGT+AGG | - | chr2_4:59091989-59092008 | Msa0338680:intron | 35.0% | |
| CCTGTTATGCACAATATGTA+GGG | - | chr2_4:59091990-59092009 | Msa0338680:intron | 35.0% | |
| ! | TGTCAATTTTTACCAGACTG+TGG | - | chr2_4:59092058-59092077 | Msa0338680:CDS | 35.0% |
| TTGAAAAGCTTTGCAACTTC+AGG | + | chr2_4:59092086-59092105 | None:intergenic | 35.0% | |
| TTTCTTCCTCTTTCTTGACA+AGG | + | chr2_4:59092142-59092161 | None:intergenic | 35.0% | |
| ! | GAAGAAAAGCTCAACCATTT+TGG | - | chr2_4:59092155-59092174 | Msa0338680:intron | 35.0% |
| ! | ATTTTCCATCTGTAAGGACA+CGG | + | chr2_4:59092257-59092276 | None:intergenic | 35.0% |
| TGTTACCAAAGGAATCTTGT+TGG | + | chr2_4:59092313-59092332 | None:intergenic | 35.0% | |
| TTGATGCTTCCTGAAATACT+GGG | + | chr2_4:59092547-59092566 | None:intergenic | 35.0% | |
| TTTGATGCTTCCTGAAATAC+TGG | + | chr2_4:59092548-59092567 | None:intergenic | 35.0% | |
| ! | GAAGCATCAAAGTCTTTCAA+GGG | - | chr2_4:59092557-59092576 | Msa0338680:intron | 35.0% |
| ATCAAAGTCTTTCAAGGGAA+AGG | - | chr2_4:59092562-59092581 | Msa0338680:intron | 35.0% | |
| CAAAAACATAAGCACCCTTT+AGG | + | chr2_4:59092902-59092921 | None:intergenic | 35.0% | |
| ! | GAAACTGATAACGAAGATGT+TGG | - | chr2_4:59092979-59092998 | Msa0338680:CDS | 35.0% |
| AAGCCTGTTTCAGATTACTT+CGG | - | chr2_4:59093003-59093022 | Msa0338680:CDS | 35.0% | |
| ! | ATACCGAAGTAATCTGAAAC+AGG | + | chr2_4:59093009-59093028 | None:intergenic | 35.0% |
| TCAGATTACTTCGGTATTAG+TGG | - | chr2_4:59093012-59093031 | Msa0338680:CDS | 35.0% | |
| CAGATTACTTCGGTATTAGT+GGG | - | chr2_4:59093013-59093032 | Msa0338680:CDS | 35.0% | |
| ! | TTTTCTTCCATCATCGTTTC+CGG | + | chr2_4:59093188-59093207 | None:intergenic | 35.0% |
| GGTGACTATTGACAGAATTA+AGG | - | chr2_4:59093225-59093244 | Msa0338680:intron | 35.0% | |
| AGCAAAACTAACAGAGTCTA+AGG | + | chr2_4:59093268-59093287 | None:intergenic | 35.0% | |
| ! | CATTTTATCTCAGGCATTTG+GGG | - | chr2_4:59093372-59093391 | Msa0338680:intron | 35.0% |
| !!! | AAGGTTTTAGCTTGTCTTCA+AGG | + | chr2_4:59093405-59093424 | None:intergenic | 35.0% |
| ! | ATTGGGTCTGACTTGAAAAA+AGG | + | chr2_4:59093424-59093443 | None:intergenic | 35.0% |
| AGCTTACACTTTCAGGAATT+GGG | + | chr2_4:59093441-59093460 | None:intergenic | 35.0% | |
| TAGCTTACACTTTCAGGAAT+TGG | + | chr2_4:59093442-59093461 | None:intergenic | 35.0% | |
| GGTGATGTGAAAATAGTTGT+TGG | - | chr2_4:59093544-59093563 | Msa0338680:intron | 35.0% | |
| AATTGTCTTGGATGAGTCAA+AGG | - | chr2_4:59093582-59093601 | Msa0338680:intron | 35.0% | |
| !! | TGTATATCGGTTCCAAATGT+TGG | + | chr2_4:59093740-59093759 | None:intergenic | 35.0% |
| !! | CAAAACTTTTGTTTCCTGCT+GGG | + | chr2_4:59094008-59094027 | None:intergenic | 35.0% |
| !! | TCAAAACTTTTGTTTCCTGC+TGG | + | chr2_4:59094009-59094028 | None:intergenic | 35.0% |
| ! | TTACCTCTTTTATAGGCTTG+GGG | + | chr2_4:59094452-59094471 | None:intergenic | 35.0% |
| ! | CTTTACCTCTTTTATAGGCT+TGG | + | chr2_4:59094454-59094473 | None:intergenic | 35.0% |
| CAAGCCTATAAAAGAGGTAA+AGG | - | chr2_4:59094452-59094471 | Msa0338680:CDS | 35.0% | |
| CCTATAAAAGAGGTAAAGGA+GGG | - | chr2_4:59094456-59094475 | Msa0338680:CDS | 35.0% | |
| CTATAAAAGAGGTAAAGGAG+GGG | - | chr2_4:59094457-59094476 | Msa0338680:CDS | 35.0% | |
| TATAAAAGAGGTAAAGGAGG+GGG | - | chr2_4:59094458-59094477 | Msa0338680:CDS | 35.0% | |
| !!! | GTATTTAGAATTTTGGGGTG+AGG | - | chr2_4:59094527-59094546 | Msa0338680:CDS | 35.0% |
| TGTGACTGTGATGTGAGAAT+GGG | + | chr2_4:59090408-59090427 | None:intergenic | 40.0% | |
| CGAAACGAAGAAAGAAACAG+AGG | + | chr2_4:59090468-59090487 | None:intergenic | 40.0% | |
| AGAGAAGAGTTGTGAGAGAA+AGG | + | chr2_4:59090531-59090550 | None:intergenic | 40.0% | |
| AGTTCGTTTGAGGAGAGAAT+GGG | + | chr2_4:59090571-59090590 | None:intergenic | 40.0% | |
| GGAGAAATCATCTTCGAGAT+CGG | + | chr2_4:59090680-59090699 | None:intergenic | 40.0% | |
| GATCTCGAAGATGATTTCTC+CGG | - | chr2_4:59090679-59090698 | Msa0338680:three_prime_UTR | 40.0% | |
| !! | TCTTTTTCGTCGAATTCAGG+GGG | + | chr2_4:59090730-59090749 | None:intergenic | 40.0% |
| !! | GTCTTTTTCGTCGAATTCAG+GGG | + | chr2_4:59090731-59090750 | None:intergenic | 40.0% |
| !! | CGTCTTTTTCGTCGAATTCA+GGG | + | chr2_4:59090732-59090751 | None:intergenic | 40.0% |
| !! | ACGTCTTTTTCGTCGAATTC+AGG | + | chr2_4:59090733-59090752 | None:intergenic | 40.0% |
| GGTGTTCATAAGAGTTACAC+TGG | - | chr2_4:59090991-59091010 | Msa0338680:intron | 40.0% | |
| ATTAAGAAGAAGACTGGACC+TGG | - | chr2_4:59091150-59091169 | Msa0338680:intron | 40.0% | |
| CCATGACACGTTAGTATTCT+TGG | + | chr2_4:59091677-59091696 | None:intergenic | 40.0% | |
| CCAAGAATACTAACGTGTCA+TGG | - | chr2_4:59091674-59091693 | Msa0338680:intron | 40.0% | |
| CCCTACATATTGTGCATAAC+AGG | + | chr2_4:59091993-59092012 | None:intergenic | 40.0% | |
| GTTGATCCTTGTCAAGAAAG+AGG | - | chr2_4:59092133-59092152 | Msa0338680:intron | 40.0% | |
| TACCAAAGGAATCTTGTTGG+AGG | + | chr2_4:59092310-59092329 | None:intergenic | 40.0% | |
| GAAATTGCTCCCAGTATTTC+AGG | - | chr2_4:59092535-59092554 | Msa0338680:CDS | 40.0% | |
| !! | GGAAGCATCAAAGTCTTTCA+AGG | - | chr2_4:59092556-59092575 | Msa0338680:intron | 40.0% |
| CTGAATTCTTGTCGAAAGCA+AGG | + | chr2_4:59092686-59092705 | None:intergenic | 40.0% | |
| CTTGCTTTCGACAAGAATTC+AGG | - | chr2_4:59092684-59092703 | Msa0338680:CDS | 40.0% | |
| AGGTGTAGTGTACTTCTTAG+TGG | - | chr2_4:59092704-59092723 | Msa0338680:CDS | 40.0% | |
| GGTGTAGTGTACTTCTTAGT+GGG | - | chr2_4:59092705-59092724 | Msa0338680:CDS | 40.0% | |
| ATCCAGCTATTCCTCCTAAA+GGG | - | chr2_4:59092885-59092904 | Msa0338680:intron | 40.0% | |
| AAACATAAGCACCCTTTAGG+AGG | + | chr2_4:59092899-59092918 | None:intergenic | 40.0% | |
| AGCACAAAGATCAACTGCAA+TGG | + | chr2_4:59092955-59092974 | None:intergenic | 40.0% | |
| ACCAGTTGAATTTCCAATGC+AGG | - | chr2_4:59093150-59093169 | Msa0338680:intron | 40.0% | |
| ACCTGCATTGGAAATTCAAC+TGG | + | chr2_4:59093154-59093173 | None:intergenic | 40.0% | |
| ! | ACTAACAGAGTCTAAGGCAA+GGG | + | chr2_4:59093262-59093281 | None:intergenic | 40.0% |
| ! | AACTAACAGAGTCTAAGGCA+AGG | + | chr2_4:59093263-59093282 | None:intergenic | 40.0% |
| CTCTCTTGTAATAGCCAAGA+TGG | - | chr2_4:59093791-59093810 | Msa0338680:intron | 40.0% | |
| CTTGTAATAGCCAAGATGGA+CGG | - | chr2_4:59093795-59093814 | Msa0338680:intron | 40.0% | |
| ! | ATTTTGTGTTCCGTCCATCT+TGG | + | chr2_4:59093808-59093827 | None:intergenic | 40.0% |
| AACACAAAATGAGCATCCCA+GGG | - | chr2_4:59093818-59093837 | Msa0338680:CDS | 40.0% | |
| ATGTTCACTTTGCAGTCTGA+TGG | - | chr2_4:59093961-59093980 | Msa0338680:intron | 40.0% | |
| CTGCTTGAGGAACTTGTAAA+AGG | + | chr2_4:59094212-59094231 | None:intergenic | 40.0% | |
| ACATCAGAGCTCTCTGATTT+AGG | + | chr2_4:59094277-59094296 | None:intergenic | 40.0% | |
| !! | GTTGCTACTTTGGTTCTCTT+TGG | + | chr2_4:59094317-59094336 | None:intergenic | 40.0% |
| GCCTATAAAAGAGGTAAAGG+AGG | - | chr2_4:59094455-59094474 | Msa0338680:CDS | 40.0% | |
| ! | CCCTCCTTTACCTCTTTTAT+AGG | + | chr2_4:59094459-59094478 | None:intergenic | 40.0% |
| GTGTGACTGTGATGTGAGAA+TGG | + | chr2_4:59090409-59090428 | None:intergenic | 45.0% | |
| GAGTTCGTTTGAGGAGAGAA+TGG | + | chr2_4:59090572-59090591 | None:intergenic | 45.0% | |
| TTCGTCATCGAGTTCGTTTG+AGG | + | chr2_4:59090581-59090600 | None:intergenic | 45.0% | |
| TAGTCGAATTCTACGCACCA+TGG | - | chr2_4:59090809-59090828 | Msa0338680:CDS | 45.0% | |
| GTGTGGTCATTGTCAAGCAT+TGG | - | chr2_4:59090831-59090850 | Msa0338680:CDS | 45.0% | |
| GCAGAGAAGCTATTGTGACA+TGG | - | chr2_4:59091127-59091146 | Msa0338680:intron | 45.0% | |
| ! | ACGCATTCGAACAGAAGTGT+CGG | - | chr2_4:59091545-59091564 | Msa0338680:intron | 45.0% |
| TCAACCCATGAAAACACCGA+AGG | + | chr2_4:59091772-59091791 | None:intergenic | 45.0% | |
| ! | TTCATGGGTTGACTCTTGTG+TGG | - | chr2_4:59091780-59091799 | Msa0338680:intron | 45.0% |
| TCTTGACAAGGATCAACGCA+GGG | + | chr2_4:59092130-59092149 | None:intergenic | 45.0% | |
| TTCTTGACAAGGATCAACGC+AGG | + | chr2_4:59092131-59092150 | None:intergenic | 45.0% | |
| CTCCTCCAACAAGATTCCTT+TGG | - | chr2_4:59092305-59092324 | Msa0338680:intron | 45.0% | |
| GATCCAGCTATTCCTCCTAA+AGG | - | chr2_4:59092884-59092903 | Msa0338680:intron | 45.0% | |
| GCAGTTGATCTTTGTGCTTG+TGG | - | chr2_4:59092957-59092976 | Msa0338680:CDS | 45.0% | |
| GTGTATGCAAGTACCTGCAT+TGG | + | chr2_4:59093166-59093185 | None:intergenic | 45.0% | |
| ATGCAGGTACTTGCATACAC+CGG | - | chr2_4:59093166-59093185 | Msa0338680:intron | 45.0% | |
| TTAACTCGGCGACAGAATGA+TGG | - | chr2_4:59093523-59093542 | Msa0338680:intron | 45.0% | |
| AGGGTCAAAGTTGTACCTCA+AGG | + | chr2_4:59093615-59093634 | None:intergenic | 45.0% | |
| CAGATATATGCTCCTTGGTG+TGG | - | chr2_4:59093708-59093727 | Msa0338680:intron | 45.0% | |
| TCGGTTCCAAATGTTGGCAA+TGG | + | chr2_4:59093734-59093753 | None:intergenic | 45.0% | |
| CAAGAGAGTCAATACTGCGA+AGG | + | chr2_4:59093779-59093798 | None:intergenic | 45.0% | |
| GAACACAAAATGAGCATCCC+AGG | - | chr2_4:59093817-59093836 | Msa0338680:CDS | 45.0% | |
| ! | TTTGGGTTTACCTTTGCCCT+GGG | + | chr2_4:59093837-59093856 | None:intergenic | 45.0% |
| ! | ATTTGGGTTTACCTTTGCCC+TGG | + | chr2_4:59093838-59093857 | None:intergenic | 45.0% |
| !! | CTGGTTTCTGGAGCTTGAAT+GGG | + | chr2_4:59094246-59094265 | None:intergenic | 45.0% |
| TCTGATTTAGGAGTTGAGGC+TGG | + | chr2_4:59094265-59094284 | None:intergenic | 45.0% | |
| GCTCTCTGATTTAGGAGTTG+AGG | + | chr2_4:59094269-59094288 | None:intergenic | 45.0% | |
| ! | ATCAGAGAGCTCTGATGTCA+AGG | - | chr2_4:59094279-59094298 | Msa0338680:CDS | 45.0% |
| ! | TGACATCGCTGTTGCTACTT+TGG | + | chr2_4:59094327-59094346 | None:intergenic | 45.0% |
| AAGTAGCAACAGCGATGTCA+AGG | - | chr2_4:59094327-59094346 | Msa0338680:CDS | 45.0% | |
| CTTGGGGAGAGAAGAATTAG+TGG | + | chr2_4:59094436-59094455 | None:intergenic | 45.0% | |
| TCTCCCCAAGCCTATAAAAG+AGG | - | chr2_4:59094446-59094465 | Msa0338680:CDS | 45.0% | |
| GGAAAAGGTGGACAAATGCA+AGG | - | chr2_4:59094479-59094498 | Msa0338680:CDS | 45.0% | |
| TGAGGAGAGAATGGGAGAGA+TGG | + | chr2_4:59090563-59090582 | None:intergenic | 50.0% | |
| ATCATCTTCGAGATCGGCGT+CGG | + | chr2_4:59090674-59090693 | None:intergenic | 50.0% | |
| TTTCGTCGAATTCAGGGGGT+TGG | + | chr2_4:59090726-59090745 | None:intergenic | 50.0% | |
| GAATTCTACGCACCATGGTG+TGG | - | chr2_4:59090814-59090833 | Msa0338680:CDS | 50.0% | |
| GCTTGACAATGACCACACCA+TGG | + | chr2_4:59090829-59090848 | None:intergenic | 50.0% | |
| !! | CGACACTGACTCATCGACAT+TGG | - | chr2_4:59091432-59091451 | Msa0338680:intron | 50.0% |
| TGTCACTGTCGACACTGACA+CGG | + | chr2_4:59091515-59091534 | None:intergenic | 50.0% | |
| ! | GTGTCGACAGTGACACATGT+TGG | - | chr2_4:59091520-59091539 | Msa0338680:intron | 50.0% |
| !! | CAGAAGTGTCGGTGCTACAA+AGG | - | chr2_4:59091556-59091575 | Msa0338680:intron | 50.0% |
| TTTGGACTTGGCGGAATTCG+TGG | - | chr2_4:59091723-59091742 | Msa0338680:intron | 50.0% | |
| TATGTAGGGTCCTGAGAGTG+AGG | - | chr2_4:59092004-59092023 | Msa0338680:intron | 50.0% | |
| CAACTTCAGGATCCACAGTC+TGG | + | chr2_4:59092073-59092092 | None:intergenic | 50.0% | |
| GTTCACCGTGTCCTTACAGA+TGG | - | chr2_4:59092249-59092268 | Msa0338680:intron | 50.0% | |
| ! | CACCCTTTAGGAGGAATAGC+TGG | + | chr2_4:59092890-59092909 | None:intergenic | 50.0% |
| GCATACACCGGAAACGATGA+TGG | - | chr2_4:59093178-59093197 | Msa0338680:intron | 50.0% | |
| GTCAAAGGACGTTCTCCTTG+AGG | - | chr2_4:59093597-59093616 | Msa0338680:intron | 50.0% | |
| GTGTGGCCATTGCCAACATT+TGG | - | chr2_4:59093725-59093744 | Msa0338680:intron | 50.0% | |
| AAATGAGCATCCCAGGGCAA+AGG | - | chr2_4:59093824-59093843 | Msa0338680:CDS | 50.0% | |
| CTGGGAAGAAGAGAAGAGTG+GGG | + | chr2_4:59093990-59094009 | None:intergenic | 50.0% | |
| GCTGGGAAGAAGAGAAGAGT+GGG | + | chr2_4:59093991-59094010 | None:intergenic | 50.0% | |
| TGCTGGGAAGAAGAGAAGAG+TGG | + | chr2_4:59093992-59094011 | None:intergenic | 50.0% | |
| ACTCTTCTCTTCTTCCCAGC+AGG | - | chr2_4:59093991-59094010 | Msa0338680:intron | 50.0% | |
| GATCACTCTCGCACACACAT+GGG | + | chr2_4:59094101-59094120 | None:intergenic | 50.0% | |
| AGATCACTCTCGCACACACA+TGG | + | chr2_4:59094102-59094121 | None:intergenic | 50.0% | |
| ! | GGATTGATGCATGCTGCTTG+AGG | + | chr2_4:59094225-59094244 | None:intergenic | 50.0% |
| !! | GCTGGTTTCTGGAGCTTGAA+TGG | + | chr2_4:59094247-59094266 | None:intergenic | 50.0% |
| !! | TAGGAGTTGAGGCTGGTTTC+TGG | + | chr2_4:59094258-59094277 | None:intergenic | 50.0% |
| AGAGGTAAAGGAGGGGGAAA+AGG | - | chr2_4:59094464-59094483 | Msa0338680:CDS | 50.0% | |
| GGAGAGAATGGGAGAGATGG+AGG | + | chr2_4:59090560-59090579 | None:intergenic | 55.0% | |
| TTCCTCGACGAACCAGAAGC+TGG | - | chr2_4:59090610-59090629 | Msa0338680:three_prime_UTR | 55.0% | |
| GTGGTGGTTTCACCAGCTTC+TGG | + | chr2_4:59090625-59090644 | None:intergenic | 55.0% | |
| ACCCTTCAATTCCGTCGCAG+CGG | + | chr2_4:59090872-59090891 | None:intergenic | 55.0% | |
| GACTTGGCGGAATTCGTGGT+TGG | - | chr2_4:59091727-59091746 | Msa0338680:intron | 55.0% | |
| TGAGAGTGAGGAGCTAGCTG+CGG | - | chr2_4:59092016-59092035 | Msa0338680:intron | 55.0% | |
| ! | AAGGATCAACGCAGGGCGTT+TGG | + | chr2_4:59092123-59092142 | None:intergenic | 55.0% |
| TGTTGGCAATGGCCACACCA+AGG | + | chr2_4:59093723-59093742 | None:intergenic | 55.0% | |
| GGTAAAGGAGGGGGAAAAGG+TGG | - | chr2_4:59094467-59094486 | Msa0338680:CDS | 55.0% | |
| !! | CACCAGCTTCTGGTTCGTCG+AGG | + | chr2_4:59090615-59090634 | None:intergenic | 60.0% |
| ACCACCACACACCACCACCA+CGG | - | chr2_4:59090640-59090659 | Msa0338680:three_prime_UTR | 60.0% | |
| AGAATATGCCGCCGCTGCGA+CGG | - | chr2_4:59090858-59090877 | Msa0338680:CDS | 60.0% | |
| CTTCAATTCCGTCGCAGCGG+CGG | + | chr2_4:59090869-59090888 | None:intergenic | 60.0% | |
| GCCGCTGCGACGGAATTGAA+GGG | - | chr2_4:59090868-59090887 | Msa0338680:CDS | 60.0% | |
| GCAGCTAGCTCCTCACTCTC+AGG | + | chr2_4:59092017-59092036 | None:intergenic | 60.0% | |
| AGCTGCGGCTTCACGTCTTG+AGG | - | chr2_4:59092031-59092050 | Msa0338680:CDS | 60.0% | |
| !! | GTGGTGGTGGTGTGTGGTGG+TGG | + | chr2_4:59090641-59090660 | None:intergenic | 65.0% |
| !! | ATCGCCGTGGTGGTGGTGTG+TGG | + | chr2_4:59090647-59090666 | None:intergenic | 65.0% |
| CGGAATCATCGCCGTGGTGG+TGG | + | chr2_4:59090654-59090673 | None:intergenic | 65.0% | |
| CGTCGGAATCATCGCCGTGG+TGG | + | chr2_4:59090657-59090676 | None:intergenic | 65.0% | |
| GTCGCAGCGGCGGCATATTC+TGG | + | chr2_4:59090859-59090878 | None:intergenic | 65.0% | |
| CGCCGCTGCGACGGAATTGA+AGG | - | chr2_4:59090867-59090886 | Msa0338680:CDS | 65.0% | |
| !! | GCCGTGGTGGTGGTGTGTGG+TGG | + | chr2_4:59090644-59090663 | None:intergenic | 70.0% |
| ! | CGGCGTCGGAATCATCGCCG+TGG | + | chr2_4:59090660-59090679 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 59090400 | 59094665 | 59090400 | ID=Msa0338680;Name=Msa0338680 |
| chr2_4 | mRNA | 59090400 | 59094665 | 59090400 | ID=Msa0338680-mRNA-1;Parent=Msa0338680;Name=Msa0338680-mRNA-1;_AED=0.10;_eAED=0.10;_QI=111|1|1|1|1|1|12|305|565 |
| chr2_4 | exon | 59090400 | 59090887 | 59090400 | ID=Msa0338680-mRNA-1:exon:18368;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59091033 | 59091089 | 59091033 | ID=Msa0338680-mRNA-1:exon:18367;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59091220 | 59091354 | 59091220 | ID=Msa0338680-mRNA-1:exon:18366;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59091447 | 59091527 | 59091447 | ID=Msa0338680-mRNA-1:exon:18365;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59091612 | 59091680 | 59091612 | ID=Msa0338680-mRNA-1:exon:18364;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59091819 | 59091893 | 59091819 | ID=Msa0338680-mRNA-1:exon:18363;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59092018 | 59092104 | 59092018 | ID=Msa0338680-mRNA-1:exon:18362;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59092482 | 59092562 | 59092482 | ID=Msa0338680-mRNA-1:exon:18361;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59092679 | 59092797 | 59092679 | ID=Msa0338680-mRNA-1:exon:18360;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59092889 | 59093054 | 59092889 | ID=Msa0338680-mRNA-1:exon:18359;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59093805 | 59093934 | 59093805 | ID=Msa0338680-mRNA-1:exon:18358;Parent=Msa0338680-mRNA-1 |
| chr2_4 | exon | 59094040 | 59094665 | 59094040 | ID=Msa0338680-mRNA-1:exon:18357;Parent=Msa0338680-mRNA-1 |
| chr2_4 | five_prime_UTR | 59094555 | 59094665 | 59094555 | ID=Msa0338680-mRNA-1:five_prime_utr;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59094040 | 59094554 | 59094040 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59093805 | 59093934 | 59093805 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59092889 | 59093054 | 59092889 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59092679 | 59092797 | 59092679 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59092482 | 59092562 | 59092482 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59092018 | 59092104 | 59092018 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59091819 | 59091893 | 59091819 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59091612 | 59091680 | 59091612 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59091447 | 59091527 | 59091447 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59091220 | 59091354 | 59091220 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59091033 | 59091089 | 59091033 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | CDS | 59090705 | 59090887 | 59090705 | ID=Msa0338680-mRNA-1:cds;Parent=Msa0338680-mRNA-1 |
| chr2_4 | three_prime_UTR | 59090400 | 59090704 | 59090400 | ID=Msa0338680-mRNA-1:three_prime_utr;Parent=Msa0338680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
