Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222830 | XP_013465385.1 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 903 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222830 | sp|Q94B55|XB31_ARATH | 67.483 | 449 | 133 | 4 | 1 | 438 | 1 | 447 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222830 | A0A072VMS8 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 903 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222830 | Msa0264270 | 0.966243 | 1.162755e-125 | -8.615850e-47 |
| Msa0222830 | Msa0339220 | 0.852606 | 4.134954e-61 | -8.615850e-47 |
| Msa0222830 | Msa0387330 | 0.928445 | 2.857983e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222830 | MtrunA17_Chr2g0328031 | 97.968 | 443 | 9 | 0 | 1 | 443 | 1 | 443 | 0.0 | 903 |
| Msa0222830 | MtrunA17_Chr4g0031491 | 74.049 | 447 | 110 | 5 | 1 | 443 | 1 | 445 | 0.0 | 681 |
| Msa0222830 | MtrunA17_Chr4g0010051 | 61.972 | 426 | 149 | 6 | 18 | 438 | 25 | 442 | 0.0 | 523 |
| Msa0222830 | MtrunA17_Chr6g0472461 | 30.752 | 452 | 233 | 12 | 1 | 403 | 1 | 421 | 5.09e-45 | 164 |
| Msa0222830 | MtrunA17_Chr4g0073161 | 32.010 | 403 | 214 | 12 | 1 | 376 | 7 | 376 | 2.11e-41 | 154 |
| Msa0222830 | MtrunA17_Chr1g0203651 | 29.766 | 299 | 157 | 11 | 88 | 376 | 1 | 256 | 9.22e-22 | 96.7 |
| Msa0222830 | MtrunA17_Chr1g0212971 | 31.220 | 205 | 122 | 4 | 14 | 215 | 134 | 322 | 1.04e-18 | 88.6 |
| Msa0222830 | MtrunA17_Chr7g0276681 | 29.661 | 236 | 125 | 8 | 15 | 219 | 85 | 310 | 1.79e-17 | 84.7 |
| Msa0222830 | MtrunA17_Chr7g0263421 | 31.429 | 245 | 131 | 9 | 5 | 219 | 41 | 278 | 3.02e-17 | 84.0 |
| Msa0222830 | MtrunA17_Chr2g0327711 | 29.796 | 245 | 133 | 9 | 5 | 218 | 58 | 294 | 4.09e-15 | 77.4 |
| Msa0222830 | MtrunA17_Chr2g0293861 | 31.875 | 160 | 97 | 5 | 25 | 181 | 10 | 160 | 4.91e-15 | 73.9 |
| Msa0222830 | MtrunA17_Chr1g0196261 | 33.333 | 183 | 108 | 6 | 45 | 218 | 252 | 429 | 6.99e-15 | 76.6 |
| Msa0222830 | MtrunA17_Chr7g0263471 | 30.332 | 211 | 125 | 5 | 11 | 215 | 120 | 314 | 5.50e-14 | 73.9 |
| Msa0222830 | MtrunA17_Chr4g0030551 | 28.095 | 210 | 126 | 4 | 12 | 215 | 71 | 261 | 1.42e-13 | 72.8 |
| Msa0222830 | MtrunA17_Chr1g0161231 | 25.630 | 238 | 144 | 8 | 11 | 232 | 53 | 273 | 2.21e-13 | 72.0 |
| Msa0222830 | MtrunA17_Chr7g0274241 | 27.138 | 269 | 163 | 6 | 18 | 259 | 21 | 283 | 6.45e-13 | 70.5 |
| Msa0222830 | MtrunA17_Chr6g0461061 | 25.974 | 231 | 140 | 4 | 25 | 240 | 141 | 355 | 2.91e-12 | 68.6 |
| Msa0222830 | MtrunA17_Chr6g0461061 | 29.032 | 217 | 139 | 4 | 47 | 253 | 244 | 455 | 3.20e-12 | 68.6 |
| Msa0222830 | MtrunA17_Chr5g0439191 | 31.884 | 138 | 79 | 4 | 49 | 181 | 8 | 135 | 3.55e-12 | 65.1 |
| Msa0222830 | MtrunA17_Chr5g0406201 | 29.240 | 171 | 104 | 3 | 45 | 215 | 300 | 453 | 1.24e-11 | 66.6 |
| Msa0222830 | MtrunA17_Chr1g0211241 | 27.074 | 229 | 125 | 9 | 50 | 247 | 139 | 356 | 3.62e-11 | 65.5 |
| Msa0222830 | MtrunA17_Chr7g0262761 | 29.560 | 159 | 100 | 4 | 15 | 168 | 48 | 199 | 3.85e-11 | 62.4 |
| Msa0222830 | MtrunA17_Chr2g0303671 | 30.065 | 153 | 94 | 2 | 30 | 182 | 132 | 271 | 4.16e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222830 | AT2G28840.1 | 67.483 | 449 | 133 | 4 | 1 | 438 | 1 | 447 | 0.0 | 623 |
| Msa0222830 | AT2G28840.2 | 70.976 | 379 | 97 | 4 | 71 | 438 | 57 | 433 | 0.0 | 557 |
| Msa0222830 | AT5G07270.1 | 31.658 | 398 | 215 | 10 | 1 | 373 | 1 | 366 | 2.85e-41 | 154 |
| Msa0222830 | AT5G57740.1 | 31.188 | 404 | 213 | 10 | 1 | 373 | 7 | 376 | 6.68e-39 | 147 |
| Msa0222830 | AT5G02620.4 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 4.10e-19 | 90.1 |
| Msa0222830 | AT5G02620.1 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 4.10e-19 | 90.1 |
| Msa0222830 | AT5G02620.3 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 4.10e-19 | 90.1 |
| Msa0222830 | AT3G04710.1 | 31.154 | 260 | 146 | 8 | 22 | 254 | 25 | 278 | 1.73e-17 | 84.7 |
| Msa0222830 | AT5G02620.5 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.21e-17 | 85.1 |
| Msa0222830 | AT5G02620.2 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.21e-17 | 85.1 |
| Msa0222830 | AT3G04710.3 | 30.000 | 300 | 166 | 11 | 22 | 294 | 249 | 531 | 2.62e-17 | 85.1 |
| Msa0222830 | AT3G12360.1 | 30.556 | 216 | 132 | 5 | 14 | 225 | 132 | 333 | 4.70e-17 | 84.0 |
| Msa0222830 | AT3G12360.2 | 30.556 | 216 | 132 | 5 | 14 | 225 | 120 | 321 | 4.73e-17 | 84.0 |
| Msa0222830 | AT5G60070.1 | 29.864 | 221 | 123 | 6 | 14 | 206 | 76 | 292 | 2.49e-16 | 81.6 |
| Msa0222830 | AT3G04710.2 | 31.154 | 260 | 145 | 9 | 22 | 254 | 25 | 277 | 3.90e-16 | 80.9 |
| Msa0222830 | AT1G07710.2 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 2.09e-15 | 79.0 |
| Msa0222830 | AT1G07710.1 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 2.09e-15 | 79.0 |
| Msa0222830 | AT2G31820.1 | 27.372 | 274 | 175 | 8 | 15 | 278 | 193 | 452 | 5.92e-14 | 74.3 |
| Msa0222830 | AT3G09550.2 | 29.064 | 203 | 127 | 5 | 15 | 215 | 154 | 341 | 2.03e-13 | 72.8 |
| Msa0222830 | AT3G09550.1 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.16e-13 | 72.8 |
| Msa0222830 | AT3G09550.3 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.16e-13 | 72.8 |
| Msa0222830 | AT5G20350.1 | 29.204 | 226 | 124 | 8 | 50 | 247 | 35 | 252 | 4.03e-13 | 72.0 |
| Msa0222830 | AT5G51160.1 | 29.139 | 151 | 92 | 4 | 37 | 180 | 34 | 176 | 3.43e-11 | 65.5 |
Find 128 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATATTGATTGATGATTT+TGG | 0.077169 | 2_1:+72271856 | Msa0222830:three_prime_UTR |
| GAAGGAATAATATGTAATTT+TGG | 0.230377 | 2_1:+72271710 | Msa0222830:three_prime_UTR |
| TTACACTATGCTGCTTATTA+TGG | 0.234084 | 2_1:+72269767 | Msa0222830:CDS |
| CTAGTCATGTGGCTGCTTCT+TGG | 0.245814 | 2_1:+72269831 | Msa0222830:CDS |
| CAGAAGAAAGAATAGCTTTA+AGG | 0.264068 | 2_1:-72269802 | None:intergenic |
| AGGTAAAATGAAAGTGAAAA+AGG | 0.265617 | 2_1:+72271687 | Msa0222830:three_prime_UTR |
| ACTATGTTGCTTCGACAAAA+TGG | 0.280496 | 2_1:-72271339 | None:intergenic |
| TTGATGTTTGATACGGTTAA+TGG | 0.291932 | 2_1:+72269734 | Msa0222830:CDS |
| TAATGATTCCATATTGGTTT+AGG | 0.298295 | 2_1:+72271634 | Msa0222830:three_prime_UTR |
| TCTAACAAGGCTTTGGCTTC+CGG | 0.299067 | 2_1:-72270774 | None:intergenic |
| AAAGGGTAAGTTTATGTTAT+GGG | 0.306875 | 2_1:+72271947 | Msa0222830:three_prime_UTR |
| TTAATAAGCAAAGTGAATTA+AGG | 0.308364 | 2_1:+72271733 | Msa0222830:three_prime_UTR |
| CAAATTTAATGATTCCATAT+TGG | 0.311125 | 2_1:+72271628 | Msa0222830:three_prime_UTR |
| TACCGCTGTCGTTCAAATTT+CGG | 0.312482 | 2_1:-72271458 | None:intergenic |
| CTTGTTAGAACAAGCTTTGA+TGG | 0.323868 | 2_1:+72270788 | Msa0222830:CDS |
| CGTATTCAGCGTGATTCATC+TGG | 0.341209 | 2_1:+72270281 | Msa0222830:CDS |
| AAAAGGGTAAGTTTATGTTA+TGG | 0.342971 | 2_1:+72271946 | Msa0222830:three_prime_UTR |
| AAGTTGGGCGTCCGAAGTTC+AGG | 0.350071 | 2_1:+72271519 | Msa0222830:CDS |
| CTTCATATTGCTGCTGCTAA+TGG | 0.351267 | 2_1:+72269275 | Msa0222830:CDS |
| AACTTCACCTCTGGTTTGAA+TGG | 0.356592 | 2_1:-72269074 | None:intergenic |
| TGTGCTTCGACCGGTAGATA+TGG | 0.358247 | 2_1:+72270074 | Msa0222830:CDS |
| AATAGAATATGTACACATTC+AGG | 0.364281 | 2_1:-72270032 | None:intergenic |
| AAGCAACATAGTTAGACTTA+TGG | 0.364923 | 2_1:+72271350 | Msa0222830:CDS |
| GACATATCTCCAACAACATT+TGG | 0.375388 | 2_1:-72271777 | None:intergenic |
| TAGTGTGTCGTTCGGAAAGT+TGG | 0.387276 | 2_1:+72271503 | Msa0222830:CDS |
| AGCTTGTTCTAACAAGGCTT+TGG | 0.389126 | 2_1:-72270781 | None:intergenic |
| CATCTGCTGAGCCTCTTGTT+TGG | 0.394206 | 2_1:+72270718 | Msa0222830:CDS |
| CAATTTGAAGGTTACCTTGT+TGG | 0.396080 | 2_1:-72269184 | None:intergenic |
| TTACCGTGCCTAAACCAATA+TGG | 0.402775 | 2_1:-72271642 | None:intergenic |
| AATGGATGAGCCACCTAGTT+TGG | 0.413371 | 2_1:-72269056 | None:intergenic |
| GGGTGCGACGCCGTTACATT+TGG | 0.413527 | 2_1:+72269992 | Msa0222830:CDS |
| ACAGAGTTGTTACAATTTGA+AGG | 0.414832 | 2_1:-72269196 | None:intergenic |
| CCCTTCATCTTGCTGCTAGA+GGG | 0.415274 | 2_1:+72270213 | Msa0222830:CDS |
| GTATATGATTTCTCTTGAAA+AGG | 0.415878 | 2_1:+72271929 | Msa0222830:three_prime_UTR |
| TGATTGTATTCGTGAATTGT+TGG | 0.428838 | 2_1:+72270244 | Msa0222830:CDS |
| AGACCTTGACCCATGTTGTC+GGG | 0.433754 | 2_1:-72269119 | None:intergenic |
| AGTGTGTCGTTCGGAAAGTT+GGG | 0.435757 | 2_1:+72271504 | Msa0222830:CDS |
| CTTCGACAAAATGGACAAAC+TGG | 0.445468 | 2_1:-72271330 | None:intergenic |
| CGGGGAGAGGGGAAGTTAAG+TGG | 0.445495 | 2_1:-72269100 | None:intergenic |
| TGCATTGCAGCCAACATAAG+AGG | 0.455233 | 2_1:-72269573 | None:intergenic |
| CCCCTTCATCTTGCTGCTAG+AGG | 0.458363 | 2_1:+72270212 | Msa0222830:CDS |
| ATTCATCAGTGAACTTAATC+CGG | 0.460718 | 2_1:+72270755 | Msa0222830:CDS |
| TATATGATTTCTCTTGAAAA+GGG | 0.460995 | 2_1:+72271930 | Msa0222830:three_prime_UTR |
| CAGGAAGGGTTGCTGCTGAA+TGG | 0.461974 | 2_1:+72271538 | Msa0222830:CDS |
| AAGGGAGAAAGATATATTGA+AGG | 0.462497 | 2_1:+72270824 | Msa0222830:CDS |
| AGATGAAGGGGAGTACTTCC+AGG | 0.465349 | 2_1:-72270200 | None:intergenic |
| TGATGGATGCAAACAGAGAA+AGG | 0.466607 | 2_1:+72270805 | Msa0222830:CDS |
| GTGCTTCGACCGGTAGATAT+GGG | 0.467851 | 2_1:+72270075 | Msa0222830:CDS |
| CGGTTTGTTGTAGCAACAAA+GGG | 0.467861 | 2_1:-72271280 | None:intergenic |
| CCCCTCTAGCAGCAAGATGA+AGG | 0.471186 | 2_1:-72270214 | None:intergenic |
| TTGGTTGTAGGGGATTTGTT+CGG | 0.476243 | 2_1:+72269946 | Msa0222830:intron |
| GAGTTATAGAAGTAGTTGTC+GGG | 0.479062 | 2_1:-72271305 | None:intergenic |
| ATAGAAGTAGTTGTCGGGTT+CGG | 0.479189 | 2_1:-72271300 | None:intergenic |
| AAGTGGTTGAACTTCACCTC+TGG | 0.492479 | 2_1:-72269083 | None:intergenic |
| TATTCGTGAATTGTTGGCAT+GGG | 0.499232 | 2_1:+72270250 | Msa0222830:CDS |
| TGTTTCATAGCAACCATGTA+TGG | 0.499705 | 2_1:-72270660 | None:intergenic |
| GACCCATGTTGTCGGGGAGA+GGG | 0.500762 | 2_1:-72269112 | None:intergenic |
| AGGGAGAAAGATATATTGAA+GGG | 0.502605 | 2_1:+72270825 | Msa0222830:CDS |
| CTGATGAATTTCAGTGGAGA+TGG | 0.506025 | 2_1:-72270741 | None:intergenic |
| TGACCCATGTTGTCGGGGAG+AGG | 0.506252 | 2_1:-72269113 | None:intergenic |
| GGAGTTATAGAAGTAGTTGT+CGG | 0.511884 | 2_1:-72271306 | None:intergenic |
| GCTCTTGTTTGTGCTTCGAC+CGG | 0.514971 | 2_1:+72270065 | Msa0222830:CDS |
| AGGTAGGTACCAAATGTTGT+TGG | 0.515990 | 2_1:+72271768 | Msa0222830:three_prime_UTR |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.517837 | 2_1:+72271200 | Msa0222830:CDS |
| ATTATATCACTCACCAAACT+AGG | 0.518766 | 2_1:+72269043 | Msa0222830:five_prime_UTR |
| CATCAAAGCTTGTTCTAACA+AGG | 0.519785 | 2_1:-72270787 | None:intergenic |
| CTTATGTTGGCTGCAATGCA+TGG | 0.523935 | 2_1:+72269576 | Msa0222830:CDS |
| ATGTGCATTGTGCACACATT+TGG | 0.527928 | 2_1:-72271254 | None:intergenic |
| CTTCATCTTGCTGCTAGAGG+GGG | 0.528164 | 2_1:+72270215 | Msa0222830:CDS |
| TTCCCCTCTCCCCGACAACA+TGG | 0.529521 | 2_1:+72269109 | Msa0222830:exon |
| ACCCATGTTGTCGGGGAGAG+GGG | 0.533190 | 2_1:-72269111 | None:intergenic |
| ACAATTGAAGTTCAGAATTG+TGG | 0.536648 | 2_1:+72271228 | Msa0222830:CDS |
| TGCAGAGGTAACAATGATCA+TGG | 0.538975 | 2_1:+72269146 | Msa0222830:CDS |
| AATTAAGGCAAAGAAGTTCA+AGG | 0.539651 | 2_1:+72271748 | Msa0222830:three_prime_UTR |
| CCCTCTAGCAGCAAGATGAA+GGG | 0.539664 | 2_1:-72270213 | None:intergenic |
| CCTTCATCTTGCTGCTAGAG+GGG | 0.539952 | 2_1:+72270214 | Msa0222830:CDS |
| TTCTGCTCAATCTAGTCATG+TGG | 0.540502 | 2_1:+72269820 | Msa0222830:CDS |
| TGTGAATGTTAGAGATGGAA+AGG | 0.540835 | 2_1:+72269971 | Msa0222830:CDS |
| ATGCAGGCGTATACCATACA+TGG | 0.545210 | 2_1:+72270647 | Msa0222830:intron |
| GGATTATCTAGTGTGTCGTT+CGG | 0.546546 | 2_1:+72271495 | Msa0222830:CDS |
| AAGACCTTGACCCATGTTGT+CGG | 0.549293 | 2_1:-72269120 | None:intergenic |
| TCGGTTTGTTGTAGCAACAA+AGG | 0.550398 | 2_1:-72271281 | None:intergenic |
| CTCTTCATTGCTGTCCAACA+AGG | 0.550538 | 2_1:+72269170 | Msa0222830:CDS |
| AGCGGTAGTAGCAGCTTCAA+AGG | 0.552358 | 2_1:+72271474 | Msa0222830:CDS |
| CGGTTTGTGAATGTTAGAGA+TGG | 0.552849 | 2_1:+72269966 | Msa0222830:CDS |
| GATGGATGCAAACAGAGAAA+GGG | 0.553678 | 2_1:+72270806 | Msa0222830:CDS |
| CTCCCCGACAACATGGGTCA+AGG | 0.556059 | 2_1:+72269116 | Msa0222830:exon |
| GTTCAAAGATAAACAAGTTG+AGG | 0.560709 | 2_1:+72271430 | Msa0222830:CDS |
| CAGCAACCCTTCCTGAACTT+CGG | 0.563206 | 2_1:-72271530 | None:intergenic |
| AAGTGTGTGCTTAACCATCA+AGG | 0.563219 | 2_1:+72271667 | Msa0222830:three_prime_UTR |
| ACAAGAGGCTCAGCAGATGT+AGG | 0.576412 | 2_1:-72270714 | None:intergenic |
| GCATGGAAGGATTGCATGTG+TGG | 0.582025 | 2_1:+72269593 | Msa0222830:CDS |
| TGTTGGCTGCAATGCATGGA+AGG | 0.583065 | 2_1:+72269580 | Msa0222830:CDS |
| GTATTCGTGAATTGTTGGCA+TGG | 0.584740 | 2_1:+72270249 | Msa0222830:CDS |
| GTGAATGTTAGAGATGGAAA+GGG | 0.588584 | 2_1:+72269972 | Msa0222830:CDS |
| ATGTTGTTGGAGATATGTCA+AGG | 0.595837 | 2_1:+72271781 | Msa0222830:three_prime_UTR |
| AGTTCACTGATGAATTTCAG+TGG | 0.597323 | 2_1:-72270747 | None:intergenic |
| TCTACACAATCTGATTGTGA+TGG | 0.598122 | 2_1:-72270870 | None:intergenic |
| GTGGAGAAGCTACTTGAAGC+TGG | 0.601028 | 2_1:+72269612 | Msa0222830:CDS |
| TTCATCTTGCTGCTAGAGGG+GGG | 0.602142 | 2_1:+72270216 | Msa0222830:CDS |
| TCCCCTCTCCCCGACAACAT+GGG | 0.602202 | 2_1:+72269110 | Msa0222830:exon |
| GACCTTGACCCATGTTGTCG+GGG | 0.603308 | 2_1:-72269118 | None:intergenic |
| ATTTGGCATCTCGACAAAGA+CGG | 0.606723 | 2_1:+72270009 | Msa0222830:CDS |
| AGTGGAGATGGCCAAACAAG+AGG | 0.607832 | 2_1:-72270729 | None:intergenic |
| ATTCCATATTGGTTTAGGCA+CGG | 0.612688 | 2_1:+72271639 | Msa0222830:three_prime_UTR |
| AGATCAGTACCCATATCTAC+CGG | 0.613771 | 2_1:-72270084 | None:intergenic |
| AGCAGATGTAGGATTTAGCA+AGG | 0.613787 | 2_1:-72270703 | None:intergenic |
| TGGGCGTCCGAAGTTCAGGA+AGG | 0.616206 | 2_1:+72271523 | Msa0222830:CDS |
| GTATTCAGCGTGATTCATCT+GGG | 0.618936 | 2_1:+72270282 | Msa0222830:CDS |
| TGTCGAGATGCCAAATGTAA+CGG | 0.619258 | 2_1:-72270002 | None:intergenic |
| GGGCGTCCGAAGTTCAGGAA+GGG | 0.620530 | 2_1:+72271524 | Msa0222830:CDS |
| AAGGCAAAGAAGTTCAAGGT+AGG | 0.622174 | 2_1:+72271752 | Msa0222830:three_prime_UTR |
| CCTCTAGCAGCAAGATGAAG+GGG | 0.627465 | 2_1:-72270212 | None:intergenic |
| CGACAAAATGGACAAACTGG+TGG | 0.636725 | 2_1:-72271327 | None:intergenic |
| TTAGCAGCAGCAATATGAAG+AGG | 0.637344 | 2_1:-72269272 | None:intergenic |
| GGCTCATCCATTCAAACCAG+AGG | 0.639756 | 2_1:+72269067 | Msa0222830:five_prime_UTR |
| GGTCAAGGTCTTAGTTGCAG+AGG | 0.642603 | 2_1:+72269131 | Msa0222830:CDS |
| ATTCGTGAATTGTTGGCATG+GGG | 0.650106 | 2_1:+72270251 | Msa0222830:CDS |
| GGGAGAAAGATATATTGAAG+GGG | 0.658402 | 2_1:+72270826 | Msa0222830:CDS |
| TGCTGCTAATGGCCAGATCG+AGG | 0.658793 | 2_1:+72269286 | Msa0222830:CDS |
| ATGATGCACAGTGGCTAGTG+TGG | 0.667440 | 2_1:+72271572 | Msa0222830:exon |
| CTCCGAAATTTGAACGACAG+CGG | 0.698163 | 2_1:+72271456 | Msa0222830:CDS |
| ATATCACTCACCAAACTAGG+TGG | 0.698905 | 2_1:+72269046 | Msa0222830:five_prime_UTR |
| GTACATATTCTATTAGACAG+TGG | 0.720585 | 2_1:+72270041 | Msa0222830:CDS |
| GTTGCTATGAAACACAGACA+CGG | 0.736330 | 2_1:+72270669 | Msa0222830:CDS |
| TGTAGATGACAATATCTCCG+AGG | 0.741974 | 2_1:+72270887 | Msa0222830:CDS |
| AAATACAAAAGAGAAAGACA+AGG | 0.747100 | 2_1:+72272040 | Msa0222830:three_prime_UTR |
| TGATAAAGAATGATGCACAG+TGG | 0.766592 | 2_1:+72271563 | Msa0222830:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATGTTTTTGAAT+TGG | + | chr2_1:72269927-72269946 | Msa0222830:intron | 10.0% |
| !!! | AATTATTCTGAAAAAGAAAA+AGG | - | chr2_1:72269862-72269881 | None:intergenic | 15.0% |
| !!! | TATAATGCAAATTTTAAACT+TGG | - | chr2_1:72271109-72271128 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTATTGCTAAAA+TGG | - | chr2_1:72272028-72272047 | None:intergenic | 15.0% |
| !!! | AATTCTTTTTCCTTATTTTC+TGG | + | chr2_1:72269311-72269330 | Msa0222830:intron | 20.0% |
| !!! | TTTTTTCGATTTAAAACATC+TGG | - | chr2_1:72269443-72269462 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATCGAAAAAAAC+AGG | + | chr2_1:72269445-72269464 | Msa0222830:CDS | 20.0% |
| !! | AAAAAACACAATGCAAAATA+AGG | - | chr2_1:72269488-72269507 | None:intergenic | 20.0% |
| !!! | TTATTTTGCATTGTGTTTTT+TGG | + | chr2_1:72269487-72269506 | Msa0222830:intron | 20.0% |
| !! | ATAATTCATCTTCATTTATG+TGG | + | chr2_1:72270342-72270361 | Msa0222830:intron | 20.0% |
| !! | ATTGAAACTTCTCAAATTTA+AGG | + | chr2_1:72270500-72270519 | Msa0222830:intron | 20.0% |
| !! | AAATTCAGTTCAAATTCATT+TGG | - | chr2_1:72271022-72271041 | None:intergenic | 20.0% |
| !! | TTATCATTTGTTTCAATCAT+AGG | + | chr2_1:72271062-72271081 | Msa0222830:intron | 20.0% |
| !! | CAAATTTAATGATTCCATAT+TGG | + | chr2_1:72271628-72271647 | Msa0222830:three_prime_UTR | 20.0% |
| !!! | GAAGGAATAATATGTAATTT+TGG | + | chr2_1:72271710-72271729 | Msa0222830:three_prime_UTR | 20.0% |
| !! | TTAATAAGCAAAGTGAATTA+AGG | + | chr2_1:72271733-72271752 | Msa0222830:three_prime_UTR | 20.0% |
| !!! | ATCATATTGATTGATGATTT+TGG | + | chr2_1:72271856-72271875 | Msa0222830:three_prime_UTR | 20.0% |
| !!! | TCATATTGATTGATGATTTT+GGG | + | chr2_1:72271857-72271876 | Msa0222830:three_prime_UTR | 20.0% |
| !! | TATATGATTTCTCTTGAAAA+GGG | + | chr2_1:72271930-72271949 | Msa0222830:three_prime_UTR | 20.0% |
| ! | AAATCGAAAAAAACAGGTAA+TGG | + | chr2_1:72269451-72269470 | Msa0222830:intron | 25.0% |
| ! | GAAAAAAGGGTTAATCAAAA+AGG | - | chr2_1:72269548-72269567 | None:intergenic | 25.0% |
| ! | TGTTAATCCATAGATGAATT+TGG | + | chr2_1:72269674-72269693 | Msa0222830:intron | 25.0% |
| !! | CAATTTTCCAAATTCATCTA+TGG | - | chr2_1:72269684-72269703 | None:intergenic | 25.0% |
| !!! | AATGTTTTTGAATTGGTTGT+AGG | + | chr2_1:72269934-72269953 | Msa0222830:intron | 25.0% |
| !!! | ATGTTTTTGAATTGGTTGTA+GGG | + | chr2_1:72269935-72269954 | Msa0222830:intron | 25.0% |
| ! | AATAGAATATGTACACATTC+AGG | - | chr2_1:72270035-72270054 | None:intergenic | 25.0% |
| !! | ATCAAACATCTAAGTCTTTT+AGG | + | chr2_1:72270418-72270437 | Msa0222830:intron | 25.0% |
| !!! | TTAGCTGTTTTAAAGTTGAA+TGG | + | chr2_1:72270546-72270565 | Msa0222830:intron | 25.0% |
| !! | ATGGATTGTAGCATTTAATT+AGG | + | chr2_1:72270565-72270584 | Msa0222830:intron | 25.0% |
| ! | AGGGATAAAATAATTGATGA+GGG | - | chr2_1:72270601-72270620 | None:intergenic | 25.0% |
| ! | TAGGGATAAAATAATTGATG+AGG | - | chr2_1:72270602-72270621 | None:intergenic | 25.0% |
| ! | AATTGCAAAACACAAGAATT+TGG | - | chr2_1:72270950-72270969 | None:intergenic | 25.0% |
| !!! | TGAGAATGCTATTTCTTTTT+TGG | - | chr2_1:72271140-72271159 | None:intergenic | 25.0% |
| !!! | TAATGATTCCATATTGGTTT+AGG | + | chr2_1:72271634-72271653 | Msa0222830:three_prime_UTR | 25.0% |
| ! | AGGTAAAATGAAAGTGAAAA+AGG | + | chr2_1:72271687-72271706 | Msa0222830:three_prime_UTR | 25.0% |
| ! | GGTAAAATGAAAGTGAAAAA+GGG | + | chr2_1:72271688-72271707 | Msa0222830:three_prime_UTR | 25.0% |
| ! | GTATATGATTTCTCTTGAAA+AGG | + | chr2_1:72271929-72271948 | Msa0222830:three_prime_UTR | 25.0% |
| ! | AAAAGGGTAAGTTTATGTTA+TGG | + | chr2_1:72271946-72271965 | Msa0222830:three_prime_UTR | 25.0% |
| ! | AAAGGGTAAGTTTATGTTAT+GGG | + | chr2_1:72271947-72271966 | Msa0222830:three_prime_UTR | 25.0% |
| ATTATATCACTCACCAAACT+AGG | + | chr2_1:72269043-72269062 | Msa0222830:five_prime_UTR | 30.0% | |
| ACAGAGTTGTTACAATTTGA+AGG | - | chr2_1:72269199-72269218 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGGAAAAGAGAA+GGG | - | chr2_1:72269232-72269251 | None:intergenic | 30.0% |
| !!! | AACGATCAAAGAGAGTTTTT+TGG | - | chr2_1:72269247-72269266 | None:intergenic | 30.0% |
| !! | TTTTGTTTCAGATTCTGTCA+AGG | + | chr2_1:72269396-72269415 | Msa0222830:intron | 30.0% |
| ATAAGAGGAGTCTGAAAAAA+GGG | - | chr2_1:72269561-72269580 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGATGTG+TGG | + | chr2_1:72269689-72269708 | Msa0222830:intron | 30.0% | |
| TGGAAACTATGAAAATCTTC+AGG | + | chr2_1:72269709-72269728 | Msa0222830:intron | 30.0% | |
| !! | TCAGGTTTTGATGTTTGATA+CGG | + | chr2_1:72269727-72269746 | Msa0222830:intron | 30.0% |
| TTGATGTTTGATACGGTTAA+TGG | + | chr2_1:72269734-72269753 | Msa0222830:CDS | 30.0% | |
| ! | TTACACTATGCTGCTTATTA+TGG | + | chr2_1:72269767-72269786 | Msa0222830:CDS | 30.0% |
| !! | TAGCTTTAAGGCAAGAAAAA+TGG | - | chr2_1:72269793-72269812 | None:intergenic | 30.0% |
| ! | CAGAAGAAAGAATAGCTTTA+AGG | - | chr2_1:72269805-72269824 | None:intergenic | 30.0% |
| ! | TCAGAATAATTCTTTTTCCC+TGG | + | chr2_1:72269871-72269890 | Msa0222830:intron | 30.0% |
| !! | TGTTTTTGAATTGGTTGTAG+GGG | + | chr2_1:72269936-72269955 | Msa0222830:intron | 30.0% |
| GTACATATTCTATTAGACAG+TGG | + | chr2_1:72270041-72270060 | Msa0222830:CDS | 30.0% | |
| ACTGATCTCTCAATATTCTA+TGG | + | chr2_1:72270099-72270118 | Msa0222830:intron | 30.0% | |
| TGATTGTATTCGTGAATTGT+TGG | + | chr2_1:72270244-72270263 | Msa0222830:CDS | 30.0% | |
| TCTTCATTTATGTGGCTTAT+TGG | + | chr2_1:72270350-72270369 | Msa0222830:intron | 30.0% | |
| GGGATAAAATAATTGATGAG+GGG | - | chr2_1:72270600-72270619 | None:intergenic | 30.0% | |
| CCAAACAACATGAAAATCTA+GGG | - | chr2_1:72270620-72270639 | None:intergenic | 30.0% | |
| ACCAAACAACATGAAAATCT+AGG | - | chr2_1:72270621-72270640 | None:intergenic | 30.0% | |
| ATTCATCAGTGAACTTAATC+CGG | + | chr2_1:72270755-72270774 | Msa0222830:CDS | 30.0% | |
| AAGGGAGAAAGATATATTGA+AGG | + | chr2_1:72270824-72270843 | Msa0222830:CDS | 30.0% | |
| AGGGAGAAAGATATATTGAA+GGG | + | chr2_1:72270825-72270844 | Msa0222830:CDS | 30.0% | |
| AAGAAATAGCATTCTCATTG+TGG | + | chr2_1:72271143-72271162 | Msa0222830:intron | 30.0% | |
| TGTGGAATATGATATTATGC+AGG | + | chr2_1:72271161-72271180 | Msa0222830:intron | 30.0% | |
| ACAATTGAAGTTCAGAATTG+TGG | + | chr2_1:72271228-72271247 | Msa0222830:CDS | 30.0% | |
| AAGCAACATAGTTAGACTTA+TGG | + | chr2_1:72271350-72271369 | Msa0222830:CDS | 30.0% | |
| GTTCAAAGATAAACAAGTTG+AGG | + | chr2_1:72271430-72271449 | Msa0222830:CDS | 30.0% | |
| ! | TCACTTTCATTTTACCTTGA+TGG | - | chr2_1:72271684-72271703 | None:intergenic | 30.0% |
| AAATGAAAGTGAAAAAGGGA+AGG | + | chr2_1:72271692-72271711 | Msa0222830:three_prime_UTR | 30.0% | |
| AATTAAGGCAAAGAAGTTCA+AGG | + | chr2_1:72271748-72271767 | Msa0222830:three_prime_UTR | 30.0% | |
| CAATTTGAAGGTTACCTTGT+TGG | - | chr2_1:72269187-72269206 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGTGGAAAAGAGA+AGG | - | chr2_1:72269233-72269252 | None:intergenic | 35.0% |
| !!! | GATCAAAGAGAGTTTTTTGG+TGG | - | chr2_1:72269244-72269263 | None:intergenic | 35.0% |
| AAAAAGAATTCACCTCGATC+TGG | - | chr2_1:72269301-72269320 | None:intergenic | 35.0% | |
| AGCAGAAATGCCAGAAAATA+AGG | - | chr2_1:72269324-72269343 | None:intergenic | 35.0% | |
| ! | ATTCTGTCAAGGCTTTTACA+TGG | + | chr2_1:72269407-72269426 | Msa0222830:CDS | 35.0% |
| ! | CGAAAAAAACAGGTAATGGT+TGG | + | chr2_1:72269455-72269474 | Msa0222830:intron | 35.0% |
| !!! | CATTGTGTTTTTTGGCATGT+TGG | + | chr2_1:72269495-72269514 | Msa0222830:intron | 35.0% |
| CATAAGAGGAGTCTGAAAAA+AGG | - | chr2_1:72269562-72269581 | None:intergenic | 35.0% | |
| ! | TTTTCAGACTCCTCTTATGT+TGG | + | chr2_1:72269563-72269582 | Msa0222830:intron | 35.0% |
| ! | AAGCTGGTGCTAATGTAATT+TGG | + | chr2_1:72269628-72269647 | Msa0222830:intron | 35.0% |
| TCAAAGTCAAAGTCAATCCA+GGG | - | chr2_1:72269891-72269910 | None:intergenic | 35.0% | |
| ATCAAAGTCAAAGTCAATCC+AGG | - | chr2_1:72269892-72269911 | None:intergenic | 35.0% | |
| TGTGAATGTTAGAGATGGAA+AGG | + | chr2_1:72269971-72269990 | Msa0222830:CDS | 35.0% | |
| GTGAATGTTAGAGATGGAAA+GGG | + | chr2_1:72269972-72269991 | Msa0222830:CDS | 35.0% | |
| ! | TTGAAATTTTGCAGCTATCC+TGG | + | chr2_1:72270182-72270201 | Msa0222830:intron | 35.0% |
| TATTCGTGAATTGTTGGCAT+GGG | + | chr2_1:72270250-72270269 | Msa0222830:CDS | 35.0% | |
| !! | GTGGCTTATTGGTTTGTATA+TGG | + | chr2_1:72270361-72270380 | Msa0222830:intron | 35.0% |
| ! | CCCTAGATTTTCATGTTGTT+TGG | + | chr2_1:72270617-72270636 | Msa0222830:intron | 35.0% |
| TGTTTCATAGCAACCATGTA+TGG | - | chr2_1:72270663-72270682 | None:intergenic | 35.0% | |
| AGTTCACTGATGAATTTCAG+TGG | - | chr2_1:72270750-72270769 | None:intergenic | 35.0% | |
| ! | CATCAAAGCTTGTTCTAACA+AGG | - | chr2_1:72270790-72270809 | None:intergenic | 35.0% |
| ! | CTTGTTAGAACAAGCTTTGA+TGG | + | chr2_1:72270788-72270807 | Msa0222830:CDS | 35.0% |
| GGGAGAAAGATATATTGAAG+GGG | + | chr2_1:72270826-72270845 | Msa0222830:CDS | 35.0% | |
| TCTACACAATCTGATTGTGA+TGG | - | chr2_1:72270873-72270892 | None:intergenic | 35.0% | |
| CAAAAGGAGTCAAATTACCT+CGG | - | chr2_1:72270907-72270926 | None:intergenic | 35.0% | |
| GGCTGAGAGATTTGATTATT+TGG | + | chr2_1:72271083-72271102 | Msa0222830:intron | 35.0% | |
| GAGTTATAGAAGTAGTTGTC+GGG | - | chr2_1:72271308-72271327 | None:intergenic | 35.0% | |
| GGAGTTATAGAAGTAGTTGT+CGG | - | chr2_1:72271309-72271328 | None:intergenic | 35.0% | |
| ! | ACTATGTTGCTTCGACAAAA+TGG | - | chr2_1:72271342-72271361 | None:intergenic | 35.0% |
| TGATAAAGAATGATGCACAG+TGG | + | chr2_1:72271563-72271582 | Msa0222830:exon | 35.0% | |
| !! | ATTCCATATTGGTTTAGGCA+CGG | + | chr2_1:72271639-72271658 | Msa0222830:three_prime_UTR | 35.0% |
| GACATATCTCCAACAACATT+TGG | - | chr2_1:72271780-72271799 | None:intergenic | 35.0% | |
| ATGTTGTTGGAGATATGTCA+AGG | + | chr2_1:72271781-72271800 | Msa0222830:three_prime_UTR | 35.0% | |
| ATATCACTCACCAAACTAGG+TGG | + | chr2_1:72269046-72269065 | Msa0222830:five_prime_UTR | 40.0% | |
| ! | AACTTCACCTCTGGTTTGAA+TGG | - | chr2_1:72269077-72269096 | None:intergenic | 40.0% |
| TGCAGAGGTAACAATGATCA+TGG | + | chr2_1:72269146-72269165 | Msa0222830:CDS | 40.0% | |
| TTAGCAGCAGCAATATGAAG+AGG | - | chr2_1:72269275-72269294 | None:intergenic | 40.0% | |
| CTTCATATTGCTGCTGCTAA+TGG | + | chr2_1:72269275-72269294 | Msa0222830:CDS | 40.0% | |
| TTCTGCTCAATCTAGTCATG+TGG | + | chr2_1:72269820-72269839 | Msa0222830:CDS | 40.0% | |
| ! | TTGGTTGTAGGGGATTTGTT+CGG | + | chr2_1:72269946-72269965 | Msa0222830:intron | 40.0% |
| CGGTTTGTGAATGTTAGAGA+TGG | + | chr2_1:72269966-72269985 | Msa0222830:CDS | 40.0% | |
| TGTCGAGATGCCAAATGTAA+CGG | - | chr2_1:72270005-72270024 | None:intergenic | 40.0% | |
| ATTTGGCATCTCGACAAAGA+CGG | + | chr2_1:72270009-72270028 | Msa0222830:CDS | 40.0% | |
| AGATCAGTACCCATATCTAC+CGG | - | chr2_1:72270087-72270106 | None:intergenic | 40.0% | |
| GTATTCGTGAATTGTTGGCA+TGG | + | chr2_1:72270249-72270268 | Msa0222830:CDS | 40.0% | |
| ATTCGTGAATTGTTGGCATG+GGG | + | chr2_1:72270251-72270270 | Msa0222830:CDS | 40.0% | |
| GTATTCAGCGTGATTCATCT+GGG | + | chr2_1:72270282-72270301 | Msa0222830:CDS | 40.0% | |
| GTTGCTATGAAACACAGACA+CGG | + | chr2_1:72270669-72270688 | Msa0222830:CDS | 40.0% | |
| AGCAGATGTAGGATTTAGCA+AGG | - | chr2_1:72270706-72270725 | None:intergenic | 40.0% | |
| CTGATGAATTTCAGTGGAGA+TGG | - | chr2_1:72270744-72270763 | None:intergenic | 40.0% | |
| ! | AGCTTGTTCTAACAAGGCTT+TGG | - | chr2_1:72270784-72270803 | None:intergenic | 40.0% |
| ! | TGATGGATGCAAACAGAGAA+AGG | + | chr2_1:72270805-72270824 | Msa0222830:CDS | 40.0% |
| GATGGATGCAAACAGAGAAA+GGG | + | chr2_1:72270806-72270825 | Msa0222830:CDS | 40.0% | |
| TGTAGATGACAATATCTCCG+AGG | + | chr2_1:72270887-72270906 | Msa0222830:CDS | 40.0% | |
| ATGTGCATTGTGCACACATT+TGG | - | chr2_1:72271257-72271276 | None:intergenic | 40.0% | |
| !! | CGGTTTGTTGTAGCAACAAA+GGG | - | chr2_1:72271283-72271302 | None:intergenic | 40.0% |
| !! | TCGGTTTGTTGTAGCAACAA+AGG | - | chr2_1:72271284-72271303 | None:intergenic | 40.0% |
| ATAGAAGTAGTTGTCGGGTT+CGG | - | chr2_1:72271303-72271322 | None:intergenic | 40.0% | |
| CTTCGACAAAATGGACAAAC+TGG | - | chr2_1:72271333-72271352 | None:intergenic | 40.0% | |
| TACCGCTGTCGTTCAAATTT+CGG | - | chr2_1:72271461-72271480 | None:intergenic | 40.0% | |
| ! | GGATTATCTAGTGTGTCGTT+CGG | + | chr2_1:72271495-72271514 | Msa0222830:CDS | 40.0% |
| TTACCGTGCCTAAACCAATA+TGG | - | chr2_1:72271645-72271664 | None:intergenic | 40.0% | |
| AAGTGTGTGCTTAACCATCA+AGG | + | chr2_1:72271667-72271686 | Msa0222830:three_prime_UTR | 40.0% | |
| AAGGCAAAGAAGTTCAAGGT+AGG | + | chr2_1:72271752-72271771 | Msa0222830:three_prime_UTR | 40.0% | |
| AGGTAGGTACCAAATGTTGT+TGG | + | chr2_1:72271768-72271787 | Msa0222830:three_prime_UTR | 40.0% | |
| AATGGATGAGCCACCTAGTT+TGG | - | chr2_1:72269059-72269078 | None:intergenic | 45.0% | |
| AAGTGGTTGAACTTCACCTC+TGG | - | chr2_1:72269086-72269105 | None:intergenic | 45.0% | |
| AAGACCTTGACCCATGTTGT+CGG | - | chr2_1:72269123-72269142 | None:intergenic | 45.0% | |
| CTCTTCATTGCTGTCCAACA+AGG | + | chr2_1:72269170-72269189 | Msa0222830:CDS | 45.0% | |
| TGCATTGCAGCCAACATAAG+AGG | - | chr2_1:72269576-72269595 | None:intergenic | 45.0% | |
| ! | CTTATGTTGGCTGCAATGCA+TGG | + | chr2_1:72269576-72269595 | Msa0222830:CDS | 45.0% |
| CGTATTCAGCGTGATTCATC+TGG | + | chr2_1:72270281-72270300 | Msa0222830:CDS | 45.0% | |
| !! | GTTGTTTGGTGCGTTTATGC+AGG | + | chr2_1:72270631-72270650 | Msa0222830:intron | 45.0% |
| ATGCAGGCGTATACCATACA+TGG | + | chr2_1:72270647-72270666 | Msa0222830:intron | 45.0% | |
| ! | TCTAACAAGGCTTTGGCTTC+CGG | - | chr2_1:72270777-72270796 | None:intergenic | 45.0% |
| CGACAAAATGGACAAACTGG+TGG | - | chr2_1:72271330-72271349 | None:intergenic | 45.0% | |
| CTCCGAAATTTGAACGACAG+CGG | + | chr2_1:72271456-72271475 | Msa0222830:CDS | 45.0% | |
| ! | TAGTGTGTCGTTCGGAAAGT+TGG | + | chr2_1:72271503-72271522 | Msa0222830:CDS | 45.0% |
| ! | AGTGTGTCGTTCGGAAAGTT+GGG | + | chr2_1:72271504-72271523 | Msa0222830:CDS | 45.0% |
| GGCTCATCCATTCAAACCAG+AGG | + | chr2_1:72269067-72269086 | Msa0222830:five_prime_UTR | 50.0% | |
| AGACCTTGACCCATGTTGTC+GGG | - | chr2_1:72269122-72269141 | None:intergenic | 50.0% | |
| GGTCAAGGTCTTAGTTGCAG+AGG | + | chr2_1:72269131-72269150 | Msa0222830:CDS | 50.0% | |
| ! | TGTTGGCTGCAATGCATGGA+AGG | + | chr2_1:72269580-72269599 | Msa0222830:CDS | 50.0% |
| GCATGGAAGGATTGCATGTG+TGG | + | chr2_1:72269593-72269612 | Msa0222830:CDS | 50.0% | |
| GTGGAGAAGCTACTTGAAGC+TGG | + | chr2_1:72269612-72269631 | Msa0222830:CDS | 50.0% | |
| CTAGTCATGTGGCTGCTTCT+TGG | + | chr2_1:72269831-72269850 | Msa0222830:CDS | 50.0% | |
| ! | GCTCTTGTTTGTGCTTCGAC+CGG | + | chr2_1:72270065-72270084 | Msa0222830:CDS | 50.0% |
| TGTGCTTCGACCGGTAGATA+TGG | + | chr2_1:72270074-72270093 | Msa0222830:CDS | 50.0% | |
| GTGCTTCGACCGGTAGATAT+GGG | + | chr2_1:72270075-72270094 | Msa0222830:CDS | 50.0% | |
| !! | AGATGAAGGGGAGTACTTCC+AGG | - | chr2_1:72270203-72270222 | None:intergenic | 50.0% |
| CCTCTAGCAGCAAGATGAAG+GGG | - | chr2_1:72270215-72270234 | None:intergenic | 50.0% | |
| CCCTCTAGCAGCAAGATGAA+GGG | - | chr2_1:72270216-72270235 | None:intergenic | 50.0% | |
| CCCTTCATCTTGCTGCTAGA+GGG | + | chr2_1:72270213-72270232 | Msa0222830:CDS | 50.0% | |
| CCTTCATCTTGCTGCTAGAG+GGG | + | chr2_1:72270214-72270233 | Msa0222830:CDS | 50.0% | |
| CTTCATCTTGCTGCTAGAGG+GGG | + | chr2_1:72270215-72270234 | Msa0222830:CDS | 50.0% | |
| TTCATCTTGCTGCTAGAGGG+GGG | + | chr2_1:72270216-72270235 | Msa0222830:CDS | 50.0% | |
| CAGCGTGATTCATCTGGGTA+TGG | + | chr2_1:72270287-72270306 | Msa0222830:intron | 50.0% | |
| ACAAGAGGCTCAGCAGATGT+AGG | - | chr2_1:72270717-72270736 | None:intergenic | 50.0% | |
| CATCTGCTGAGCCTCTTGTT+TGG | + | chr2_1:72270718-72270737 | Msa0222830:CDS | 50.0% | |
| AGTGGAGATGGCCAAACAAG+AGG | - | chr2_1:72270732-72270751 | None:intergenic | 50.0% | |
| TATGTGTGCACGCGGACAAA+AGG | - | chr2_1:72270923-72270942 | None:intergenic | 50.0% | |
| TTGGTGTGTATGTGTGCACG+CGG | - | chr2_1:72270931-72270950 | None:intergenic | 50.0% | |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr2_1:72271200-72271219 | Msa0222830:CDS | 50.0% |
| AGCGGTAGTAGCAGCTTCAA+AGG | + | chr2_1:72271474-72271493 | Msa0222830:CDS | 50.0% | |
| CAGCAACCCTTCCTGAACTT+CGG | - | chr2_1:72271533-72271552 | None:intergenic | 50.0% | |
| ATGATGCACAGTGGCTAGTG+TGG | + | chr2_1:72271572-72271591 | Msa0222830:exon | 50.0% | |
| GACCTTGACCCATGTTGTCG+GGG | - | chr2_1:72269121-72269140 | None:intergenic | 55.0% | |
| TGCTGCTAATGGCCAGATCG+AGG | + | chr2_1:72269286-72269305 | Msa0222830:CDS | 55.0% | |
| CCCCTTCATCTTGCTGCTAG+AGG | + | chr2_1:72270212-72270231 | Msa0222830:CDS | 55.0% | |
| CCCCTCTAGCAGCAAGATGA+AGG | - | chr2_1:72270217-72270236 | None:intergenic | 55.0% | |
| AAGTTGGGCGTCCGAAGTTC+AGG | + | chr2_1:72271519-72271538 | Msa0222830:CDS | 55.0% | |
| CAGGAAGGGTTGCTGCTGAA+TGG | + | chr2_1:72271538-72271557 | Msa0222830:CDS | 55.0% | |
| CGGGGAGAGGGGAAGTTAAG+TGG | - | chr2_1:72269103-72269122 | None:intergenic | 60.0% | |
| TTCCCCTCTCCCCGACAACA+TGG | + | chr2_1:72269109-72269128 | Msa0222830:exon | 60.0% | |
| TCCCCTCTCCCCGACAACAT+GGG | + | chr2_1:72269110-72269129 | Msa0222830:exon | 60.0% | |
| ACCCATGTTGTCGGGGAGAG+GGG | - | chr2_1:72269114-72269133 | None:intergenic | 60.0% | |
| GACCCATGTTGTCGGGGAGA+GGG | - | chr2_1:72269115-72269134 | None:intergenic | 60.0% | |
| TGACCCATGTTGTCGGGGAG+AGG | - | chr2_1:72269116-72269135 | None:intergenic | 60.0% | |
| CTCCCCGACAACATGGGTCA+AGG | + | chr2_1:72269116-72269135 | Msa0222830:exon | 60.0% | |
| GGGTGCGACGCCGTTACATT+TGG | + | chr2_1:72269992-72270011 | Msa0222830:CDS | 60.0% | |
| TGGGCGTCCGAAGTTCAGGA+AGG | + | chr2_1:72271523-72271542 | Msa0222830:CDS | 60.0% | |
| GGGCGTCCGAAGTTCAGGAA+GGG | + | chr2_1:72271524-72271543 | Msa0222830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72268897 | 72272062 | 72268897 | ID=Msa0222830;Name=Msa0222830 |
| chr2_1 | mRNA | 72268897 | 72272062 | 72268897 | ID=Msa0222830-mRNA-1;Parent=Msa0222830;Name=Msa0222830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=231|1|1|1|1|1|8|487|443 |
| chr2_1 | exon | 72268897 | 72269307 | 72268897 | ID=Msa0222830-mRNA-1:exon:20881;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72269407 | 72269466 | 72269407 | ID=Msa0222830-mRNA-1:exon:20882;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72269570 | 72269641 | 72269570 | ID=Msa0222830-mRNA-1:exon:20883;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72269731 | 72269852 | 72269731 | ID=Msa0222830-mRNA-1:exon:20884;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72269956 | 72270096 | 72269956 | ID=Msa0222830-mRNA-1:exon:20885;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72270196 | 72270303 | 72270196 | ID=Msa0222830-mRNA-1:exon:20886;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72270653 | 72270908 | 72270653 | ID=Msa0222830-mRNA-1:exon:20887;Parent=Msa0222830-mRNA-1 |
| chr2_1 | exon | 72271183 | 72272062 | 72271183 | ID=Msa0222830-mRNA-1:exon:20888;Parent=Msa0222830-mRNA-1 |
| chr2_1 | five_prime_UTR | 72268897 | 72269127 | 72268897 | ID=Msa0222830-mRNA-1:five_prime_utr;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72269128 | 72269307 | 72269128 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72269407 | 72269466 | 72269407 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72269570 | 72269641 | 72269570 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72269731 | 72269852 | 72269731 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72269956 | 72270096 | 72269956 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72270196 | 72270303 | 72270196 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72270653 | 72270908 | 72270653 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | CDS | 72271183 | 72271575 | 72271183 | ID=Msa0222830-mRNA-1:cds;Parent=Msa0222830-mRNA-1 |
| chr2_1 | three_prime_UTR | 72271576 | 72272062 | 72271576 | ID=Msa0222830-mRNA-1:three_prime_utr;Parent=Msa0222830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
