Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387330 | XP_013465385.1 | 97.743 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387330 | sp|Q94B55|XB31_ARATH | 67.261 | 449 | 134 | 4 | 1 | 438 | 1 | 447 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387330 | A0A072VMS8 | 97.743 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 0.0 | 902 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222830 | Msa0387330 | 0.928445 | 2.857983e-92 | -8.615850e-47 |
| Msa0264270 | Msa0387330 | 0.922106 | 1.511846e-88 | -8.615850e-47 |
| Msa0339220 | Msa0387330 | 0.889533 | 2.224538e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387330 | MtrunA17_Chr2g0328031 | 97.743 | 443 | 10 | 0 | 1 | 443 | 1 | 443 | 0.0 | 902 |
| Msa0387330 | MtrunA17_Chr4g0031491 | 73.826 | 447 | 111 | 5 | 1 | 443 | 1 | 445 | 0.0 | 681 |
| Msa0387330 | MtrunA17_Chr4g0010051 | 61.358 | 427 | 150 | 7 | 18 | 438 | 25 | 442 | 0.0 | 518 |
| Msa0387330 | MtrunA17_Chr6g0472461 | 30.752 | 452 | 233 | 12 | 1 | 403 | 1 | 421 | 5.35e-45 | 164 |
| Msa0387330 | MtrunA17_Chr4g0073161 | 32.010 | 403 | 214 | 12 | 1 | 376 | 7 | 376 | 1.27e-41 | 154 |
| Msa0387330 | MtrunA17_Chr1g0203651 | 29.766 | 299 | 157 | 11 | 88 | 376 | 1 | 256 | 1.04e-21 | 96.7 |
| Msa0387330 | MtrunA17_Chr1g0212971 | 31.220 | 205 | 122 | 4 | 14 | 215 | 134 | 322 | 1.38e-18 | 88.2 |
| Msa0387330 | MtrunA17_Chr7g0276681 | 29.661 | 236 | 125 | 8 | 15 | 219 | 85 | 310 | 1.05e-17 | 85.5 |
| Msa0387330 | MtrunA17_Chr7g0263421 | 31.429 | 245 | 131 | 9 | 5 | 219 | 41 | 278 | 1.54e-17 | 84.7 |
| Msa0387330 | MtrunA17_Chr2g0327711 | 29.796 | 245 | 133 | 9 | 5 | 218 | 58 | 294 | 2.06e-15 | 78.6 |
| Msa0387330 | MtrunA17_Chr2g0293861 | 31.875 | 160 | 97 | 5 | 25 | 181 | 10 | 160 | 2.32e-15 | 74.7 |
| Msa0387330 | MtrunA17_Chr1g0196261 | 33.333 | 183 | 108 | 6 | 45 | 218 | 252 | 429 | 3.73e-15 | 77.4 |
| Msa0387330 | MtrunA17_Chr7g0263471 | 30.332 | 211 | 125 | 5 | 11 | 215 | 120 | 314 | 4.18e-14 | 74.3 |
| Msa0387330 | MtrunA17_Chr4g0030551 | 28.095 | 210 | 126 | 4 | 12 | 215 | 71 | 261 | 1.93e-13 | 72.4 |
| Msa0387330 | MtrunA17_Chr1g0161231 | 25.630 | 238 | 144 | 8 | 11 | 232 | 53 | 273 | 3.15e-13 | 71.6 |
| Msa0387330 | MtrunA17_Chr7g0274241 | 27.138 | 269 | 163 | 6 | 18 | 259 | 21 | 283 | 5.02e-13 | 70.9 |
| Msa0387330 | MtrunA17_Chr6g0461061 | 29.032 | 217 | 139 | 4 | 47 | 253 | 244 | 455 | 1.37e-12 | 69.7 |
| Msa0387330 | MtrunA17_Chr6g0461061 | 25.974 | 231 | 140 | 4 | 25 | 240 | 141 | 355 | 5.54e-12 | 67.8 |
| Msa0387330 | MtrunA17_Chr5g0439191 | 31.884 | 138 | 79 | 4 | 49 | 181 | 8 | 135 | 1.61e-12 | 65.9 |
| Msa0387330 | MtrunA17_Chr5g0406201 | 29.240 | 171 | 104 | 3 | 45 | 215 | 300 | 453 | 1.46e-11 | 66.2 |
| Msa0387330 | MtrunA17_Chr1g0211241 | 27.074 | 229 | 125 | 9 | 50 | 247 | 139 | 356 | 2.17e-11 | 65.9 |
| Msa0387330 | MtrunA17_Chr7g0262761 | 28.834 | 163 | 104 | 4 | 15 | 172 | 48 | 203 | 2.38e-11 | 63.2 |
| Msa0387330 | MtrunA17_Chr5g0418551 | 29.947 | 187 | 111 | 4 | 45 | 228 | 53 | 222 | 4.75e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387330 | AT2G28840.1 | 67.261 | 449 | 134 | 4 | 1 | 438 | 1 | 447 | 0.0 | 623 |
| Msa0387330 | AT2G28840.2 | 70.712 | 379 | 98 | 4 | 71 | 438 | 57 | 433 | 0.0 | 556 |
| Msa0387330 | AT5G07270.1 | 31.658 | 398 | 215 | 10 | 1 | 373 | 1 | 366 | 2.60e-41 | 154 |
| Msa0387330 | AT5G57740.1 | 30.941 | 404 | 214 | 10 | 1 | 373 | 7 | 376 | 6.49e-39 | 147 |
| Msa0387330 | AT5G02620.4 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 6.28e-19 | 89.7 |
| Msa0387330 | AT5G02620.1 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 6.28e-19 | 89.7 |
| Msa0387330 | AT5G02620.3 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 6.28e-19 | 89.7 |
| Msa0387330 | AT3G04710.1 | 30.000 | 300 | 166 | 11 | 22 | 294 | 25 | 307 | 8.00e-18 | 85.9 |
| Msa0387330 | AT3G04710.3 | 30.000 | 300 | 166 | 11 | 22 | 294 | 249 | 531 | 9.19e-18 | 86.3 |
| Msa0387330 | AT5G02620.5 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.84e-17 | 84.7 |
| Msa0387330 | AT5G02620.2 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.84e-17 | 84.7 |
| Msa0387330 | AT3G12360.2 | 30.556 | 216 | 132 | 5 | 14 | 225 | 120 | 321 | 6.24e-17 | 83.6 |
| Msa0387330 | AT3G12360.1 | 30.556 | 216 | 132 | 5 | 14 | 225 | 132 | 333 | 6.85e-17 | 83.6 |
| Msa0387330 | AT5G60070.1 | 30.317 | 221 | 122 | 6 | 14 | 206 | 76 | 292 | 1.38e-16 | 82.4 |
| Msa0387330 | AT3G04710.2 | 30.000 | 300 | 165 | 12 | 22 | 294 | 25 | 306 | 1.42e-16 | 82.0 |
| Msa0387330 | AT1G07710.2 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 8.88e-16 | 80.1 |
| Msa0387330 | AT1G07710.1 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 8.88e-16 | 80.1 |
| Msa0387330 | AT2G31820.1 | 27.273 | 275 | 174 | 9 | 15 | 278 | 193 | 452 | 8.43e-14 | 73.9 |
| Msa0387330 | AT3G09550.2 | 29.064 | 203 | 127 | 5 | 15 | 215 | 154 | 341 | 1.38e-13 | 73.2 |
| Msa0387330 | AT3G09550.1 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 1.38e-13 | 73.2 |
| Msa0387330 | AT3G09550.3 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 1.38e-13 | 73.2 |
| Msa0387330 | AT5G20350.1 | 29.204 | 226 | 124 | 8 | 50 | 247 | 35 | 252 | 2.35e-13 | 72.4 |
| Msa0387330 | AT5G51160.1 | 29.139 | 151 | 92 | 4 | 37 | 180 | 34 | 176 | 6.28e-11 | 64.7 |
Find 129 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATATTGATTGATGATTT+TGG | 0.077169 | 3_1:-91248541 | Msa0387330:three_prime_UTR |
| TTACACTATGCTGCTTATTA+TGG | 0.234084 | 3_1:-91250633 | Msa0387330:CDS |
| CTAGTCATGTGGCTGCTTCT+TGG | 0.245814 | 3_1:-91250569 | Msa0387330:intron |
| CAGAAGAAAGAATAGCTTTA+AGG | 0.264068 | 3_1:+91250598 | None:intergenic |
| AGGTAAAATGAAAGTGAAAA+AGG | 0.265617 | 3_1:-91248713 | Msa0387330:three_prime_UTR |
| ACTATGTTGCTTCGACAAAA+TGG | 0.280496 | 3_1:+91249061 | None:intergenic |
| TTGATGTTTGATACGGTTAA+TGG | 0.291932 | 3_1:-91250666 | Msa0387330:CDS |
| TAATGATTCCATATTGGTTT+AGG | 0.298295 | 3_1:-91248766 | Msa0387330:three_prime_UTR |
| TCTAACAAGGCTTTGGCTTC+CGG | 0.299067 | 3_1:+91249626 | None:intergenic |
| AAAGGGTAAGTTTATGTTAT+GGG | 0.306875 | 3_1:-91248450 | Msa0387330:three_prime_UTR |
| TTAATAAGCAAAGTGAATTA+AGG | 0.308364 | 3_1:-91248664 | Msa0387330:three_prime_UTR |
| CAAATTTAATGATTCCATAT+TGG | 0.311125 | 3_1:-91248772 | Msa0387330:three_prime_UTR |
| TACCGCTGTCGTTCAAATTT+CGG | 0.312482 | 3_1:+91248942 | None:intergenic |
| CTTGTTAGAACAAGCTTTGA+TGG | 0.323868 | 3_1:-91249612 | Msa0387330:CDS |
| CGTATTCAGCGTGATTCATC+TGG | 0.341209 | 3_1:-91250119 | Msa0387330:CDS |
| AAAAGGGTAAGTTTATGTTA+TGG | 0.342971 | 3_1:-91248451 | Msa0387330:three_prime_UTR |
| AAGTTGGGCGTCCGAAGTTC+AGG | 0.350071 | 3_1:-91248881 | Msa0387330:CDS |
| CTTCATATTGCTGCTGCTAA+TGG | 0.351267 | 3_1:-91251135 | Msa0387330:CDS |
| AACTTCACCTCTGGTTTGAA+TGG | 0.356592 | 3_1:+91251336 | None:intergenic |
| TGTGCTTCGACCGGTAGATA+TGG | 0.358247 | 3_1:-91250326 | Msa0387330:CDS |
| AATAGAATATGTACACATTC+AGG | 0.364281 | 3_1:+91250368 | None:intergenic |
| AAGCAACATAGTTAGACTTA+TGG | 0.364923 | 3_1:-91249050 | Msa0387330:CDS |
| GACATATCTCCAACAACATT+TGG | 0.375388 | 3_1:+91248620 | None:intergenic |
| TAGTGTGTCGTTCGGAAAGT+TGG | 0.387276 | 3_1:-91248897 | Msa0387330:CDS |
| AGCTTGTTCTAACAAGGCTT+TGG | 0.389126 | 3_1:+91249619 | None:intergenic |
| CATCTGCTGAGCCTCTTGTT+TGG | 0.394206 | 3_1:-91249682 | Msa0387330:CDS |
| CAATTTGAAGGTTACCTTGT+TGG | 0.396080 | 3_1:+91251226 | None:intergenic |
| TTACCGTGCCTAAACCAATA+TGG | 0.402775 | 3_1:+91248758 | None:intergenic |
| AATGGATGAGCCACCTAGTT+TGG | 0.413371 | 3_1:+91251354 | None:intergenic |
| GGGTGCGACGCCGTTACATT+TGG | 0.413527 | 3_1:-91250408 | Msa0387330:CDS |
| ACAGAGTTGTTACAATTTGA+AGG | 0.414832 | 3_1:+91251214 | None:intergenic |
| CCCTTCATCTTGCTGCTAGA+GGG | 0.415274 | 3_1:-91250187 | Msa0387330:CDS |
| GTATATGATTTCTCTTGAAA+AGG | 0.415878 | 3_1:-91248468 | Msa0387330:three_prime_UTR |
| TGATTGTATTCGTGAATTGT+TGG | 0.428838 | 3_1:-91250156 | Msa0387330:CDS |
| AGACCTTGACCCATGTTGTC+GGG | 0.433754 | 3_1:+91251291 | None:intergenic |
| AGTGTGTCGTTCGGAAAGTT+GGG | 0.435757 | 3_1:-91248896 | Msa0387330:CDS |
| CTTCGACAAAATGGACAAAC+TGG | 0.445468 | 3_1:+91249070 | None:intergenic |
| TGCATTGCAGCCAACATAAG+AGG | 0.455233 | 3_1:+91250827 | None:intergenic |
| CCCCTTCATCTTGCTGCTAG+AGG | 0.458363 | 3_1:-91250188 | Msa0387330:CDS |
| ATTCATCAGTGAACTTAATC+CGG | 0.460718 | 3_1:-91249645 | Msa0387330:CDS |
| TATATGATTTCTCTTGAAAA+GGG | 0.460995 | 3_1:-91248467 | Msa0387330:three_prime_UTR |
| CAGGAAGGGTTGCTGCTGAA+TGG | 0.461974 | 3_1:-91248862 | Msa0387330:CDS |
| AGATGAAGGGGAGTACTTCC+AGG | 0.465349 | 3_1:+91250200 | None:intergenic |
| TGATGGATGCAAACAGAGAA+AGG | 0.466607 | 3_1:-91249595 | Msa0387330:CDS |
| AAGGGAGAAAGATATAATGA+AGG | 0.467810 | 3_1:-91249576 | Msa0387330:CDS |
| GTGCTTCGACCGGTAGATAT+GGG | 0.467851 | 3_1:-91250325 | Msa0387330:intron |
| CGGTTTGTTGTAGCAACAAA+GGG | 0.467861 | 3_1:+91249120 | None:intergenic |
| CCCCTCTAGCAGCAAGATGA+AGG | 0.471186 | 3_1:+91250186 | None:intergenic |
| AAGTGGTTGAACTTCACCTC+TGG | 0.476109 | 3_1:+91251327 | None:intergenic |
| TTGGTTGTAGGGGATTTGTT+CGG | 0.476243 | 3_1:-91250454 | Msa0387330:intron |
| GAGTTATAGAAGTAGTTGTC+GGG | 0.479062 | 3_1:+91249095 | None:intergenic |
| ATAGAAGTAGTTGTCGGGTT+CGG | 0.479189 | 3_1:+91249100 | None:intergenic |
| TTCCCCTCTCCCCGACAACA+TGG | 0.487815 | 3_1:-91251301 | Msa0387330:exon |
| TATTCGTGAATTGTTGGCAT+GGG | 0.499232 | 3_1:-91250150 | Msa0387330:CDS |
| TGTTTCATAGCAACCATGTA+TGG | 0.499705 | 3_1:+91249740 | None:intergenic |
| GACCCATGTTGTCGGGGAGA+GGG | 0.500762 | 3_1:+91251298 | None:intergenic |
| CTGATGAATTTCAGTGGAGA+TGG | 0.506025 | 3_1:+91249659 | None:intergenic |
| TGACCCATGTTGTCGGGGAG+AGG | 0.506252 | 3_1:+91251297 | None:intergenic |
| AGGGAGAAAGATATAATGAA+GGG | 0.507251 | 3_1:-91249575 | Msa0387330:CDS |
| GGAGTTATAGAAGTAGTTGT+CGG | 0.511884 | 3_1:+91249094 | None:intergenic |
| GCTCTTGTTTGTGCTTCGAC+CGG | 0.514971 | 3_1:-91250335 | Msa0387330:CDS |
| AGGTAGGTACCAAATGTTGT+TGG | 0.515990 | 3_1:-91248629 | Msa0387330:three_prime_UTR |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.517837 | 3_1:-91249200 | Msa0387330:CDS |
| ATTATATCACTCACCAAACT+AGG | 0.518766 | 3_1:-91251367 | Msa0387330:five_prime_UTR |
| CATCAAAGCTTGTTCTAACA+AGG | 0.519785 | 3_1:+91249613 | None:intergenic |
| CTTATGTTGGCTGCAATGCA+TGG | 0.523935 | 3_1:-91250824 | Msa0387330:CDS |
| ATGTGCATTGTGCACACATT+TGG | 0.527928 | 3_1:+91249146 | None:intergenic |
| CTTCATCTTGCTGCTAGAGG+GGG | 0.528164 | 3_1:-91250185 | Msa0387330:CDS |
| CGGGGAGAGGGGAAGTGAAG+TGG | 0.532792 | 3_1:+91251310 | None:intergenic |
| ACCCATGTTGTCGGGGAGAG+GGG | 0.533190 | 3_1:+91251299 | None:intergenic |
| ACAATTGAAGTTCAGAATTG+TGG | 0.536648 | 3_1:-91249172 | Msa0387330:CDS |
| TGCAGAGGTAACAATGATCA+TGG | 0.538975 | 3_1:-91251264 | Msa0387330:CDS |
| AATTAAGGCAAAGAAGTTCA+AGG | 0.539651 | 3_1:-91248649 | Msa0387330:three_prime_UTR |
| CCCTCTAGCAGCAAGATGAA+GGG | 0.539664 | 3_1:+91250187 | None:intergenic |
| CCTTCATCTTGCTGCTAGAG+GGG | 0.539952 | 3_1:-91250186 | Msa0387330:CDS |
| TTCTGCTCAATCTAGTCATG+TGG | 0.540502 | 3_1:-91250580 | Msa0387330:CDS |
| TGTGAATGTTAGAGATGGAA+AGG | 0.540835 | 3_1:-91250429 | Msa0387330:CDS |
| ATGCAGGCGTATACCATACA+TGG | 0.545210 | 3_1:-91249753 | Msa0387330:intron |
| GGATTATCTAGTGTGTCGTT+CGG | 0.546546 | 3_1:-91248905 | Msa0387330:CDS |
| AAGACCTTGACCCATGTTGT+CGG | 0.549293 | 3_1:+91251290 | None:intergenic |
| TCGGTTTGTTGTAGCAACAA+AGG | 0.550398 | 3_1:+91249119 | None:intergenic |
| CTCTTCATTGCTGTCCAACA+AGG | 0.550538 | 3_1:-91251240 | Msa0387330:CDS |
| AGCGGTAGTAGCAGCTTCAA+AGG | 0.552358 | 3_1:-91248926 | Msa0387330:CDS |
| CGGTTTGTGAATGTTAGAGA+TGG | 0.552849 | 3_1:-91250434 | Msa0387330:CDS |
| GATGGATGCAAACAGAGAAA+GGG | 0.553678 | 3_1:-91249594 | Msa0387330:CDS |
| CTCCCCGACAACATGGGTCA+AGG | 0.556059 | 3_1:-91251294 | Msa0387330:exon |
| GTTCAAAGATAAACAAGTTG+AGG | 0.560709 | 3_1:-91248970 | Msa0387330:CDS |
| CAGCAACCCTTCCTGAACTT+CGG | 0.563206 | 3_1:+91248870 | None:intergenic |
| AAGTGTGTGCTTAACCATCA+AGG | 0.563219 | 3_1:-91248733 | Msa0387330:three_prime_UTR |
| ACAAGAGGCTCAGCAGATGT+AGG | 0.576412 | 3_1:+91249686 | None:intergenic |
| GCATGGAAGGATTGCATGTG+TGG | 0.582025 | 3_1:-91250807 | Msa0387330:CDS |
| TGTTGGCTGCAATGCATGGA+AGG | 0.583065 | 3_1:-91250820 | Msa0387330:CDS |
| GTATTCGTGAATTGTTGGCA+TGG | 0.584740 | 3_1:-91250151 | Msa0387330:CDS |
| GTGAATGTTAGAGATGGAAA+GGG | 0.588584 | 3_1:-91250428 | Msa0387330:CDS |
| ATGTTGTTGGAGATATGTCA+AGG | 0.595837 | 3_1:-91248616 | Msa0387330:three_prime_UTR |
| AGTTCACTGATGAATTTCAG+TGG | 0.597323 | 3_1:+91249653 | None:intergenic |
| TCTACACAATCTGATTGTGA+TGG | 0.598122 | 3_1:+91249530 | None:intergenic |
| TCCCCTCTCCCCGACAACAT+GGG | 0.600182 | 3_1:-91251300 | Msa0387330:exon |
| GTGGAGAAGCTACTTGAAGC+TGG | 0.601028 | 3_1:-91250788 | Msa0387330:CDS |
| TTCATCTTGCTGCTAGAGGG+GGG | 0.602142 | 3_1:-91250184 | Msa0387330:CDS |
| GACCTTGACCCATGTTGTCG+GGG | 0.603308 | 3_1:+91251292 | None:intergenic |
| AGTGGAGATGGCCAAACAAG+AGG | 0.607832 | 3_1:+91249671 | None:intergenic |
| ATTTGGCATCTCGACAAAGT+CGG | 0.612184 | 3_1:-91250391 | Msa0387330:CDS |
| ATTCCATATTGGTTTAGGCA+CGG | 0.612688 | 3_1:-91248761 | Msa0387330:three_prime_UTR |
| AGATCAGTACCCATATCTAC+CGG | 0.613771 | 3_1:+91250316 | None:intergenic |
| AGCAGATGTAGGATTTAGCA+AGG | 0.613787 | 3_1:+91249697 | None:intergenic |
| TGGGCGTCCGAAGTTCAGGA+AGG | 0.616206 | 3_1:-91248877 | Msa0387330:CDS |
| GTATTCAGCGTGATTCATCT+GGG | 0.618936 | 3_1:-91250118 | Msa0387330:intron |
| GGGCGTCCGAAGTTCAGGAA+GGG | 0.620530 | 3_1:-91248876 | Msa0387330:CDS |
| TGTCGAGATGCCAAATGTAA+CGG | 0.620720 | 3_1:+91250398 | None:intergenic |
| AAGGCAAAGAAGTTCAAGGT+AGG | 0.622174 | 3_1:-91248645 | Msa0387330:three_prime_UTR |
| CCTCTAGCAGCAAGATGAAG+GGG | 0.627465 | 3_1:+91250188 | None:intergenic |
| CAATCTGATTGTGATGGAGA+CGG | 0.634456 | 3_1:+91249536 | None:intergenic |
| CGACAAAATGGACAAACTGG+TGG | 0.636725 | 3_1:+91249073 | None:intergenic |
| TTAGCAGCAGCAATATGAAG+AGG | 0.637344 | 3_1:+91251138 | None:intergenic |
| GGCTCATCCATTCAAACCAG+AGG | 0.639756 | 3_1:-91251343 | Msa0387330:five_prime_UTR |
| GGTCAAGGTCTTAGTTGCAG+AGG | 0.642603 | 3_1:-91251279 | Msa0387330:CDS |
| ATTCGTGAATTGTTGGCATG+GGG | 0.650106 | 3_1:-91250149 | Msa0387330:CDS |
| GGGAGAAAGATATAATGAAG+GGG | 0.658402 | 3_1:-91249574 | Msa0387330:CDS |
| TGCTGCTAATGGCCAGATCG+AGG | 0.658793 | 3_1:-91251124 | Msa0387330:intron |
| ATGATGCACAGTGGCTAGTG+TGG | 0.667440 | 3_1:-91248828 | Msa0387330:exon |
| CTCCGAAATTTGAACGACAG+CGG | 0.698163 | 3_1:-91248944 | Msa0387330:CDS |
| ATATCACTCACCAAACTAGG+TGG | 0.698905 | 3_1:-91251364 | Msa0387330:five_prime_UTR |
| CTGACTGTGTCAGTGAATAG+CGG | 0.699136 | 3_1:+91251560 | None:intergenic |
| GTACATATTCTATTAGACAG+TGG | 0.720585 | 3_1:-91250359 | Msa0387330:CDS |
| GTTGCTATGAAACACAGACA+CGG | 0.736330 | 3_1:-91249731 | Msa0387330:CDS |
| TGTAGATGACAATATCTCCG+AGG | 0.741974 | 3_1:-91249513 | Msa0387330:intron |
| AAATACAAAAGAGAAAGACA+AGG | 0.747100 | 3_1:-91248357 | Msa0387330:three_prime_UTR |
| TGATAAAGAATGATGCACAG+TGG | 0.766592 | 3_1:-91248837 | Msa0387330:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATGTTTTTGAAT+TGG | - | chr3_1:91249444-91249463 | Msa0387330:intron | 10.0% |
| !!! | AATTATTCTGAAAAAGAAAA+AGG | + | chr3_1:91249379-91249398 | None:intergenic | 15.0% |
| !!! | TATAATGCAAATTTTAAACT+TGG | + | chr3_1:91250626-91250645 | None:intergenic | 15.0% |
| !!! | GGAATAATATGTAATTTTAT+TGG | - | chr3_1:91251230-91251249 | Msa0387330:CDS | 15.0% |
| !!! | TTGTATTTTTATTGCTAAAA+TGG | + | chr3_1:91251548-91251567 | None:intergenic | 15.0% |
| !!! | AATTCTTTTTCCTTATTTTC+TGG | - | chr3_1:91248818-91248837 | Msa0387330:three_prime_UTR | 20.0% |
| !!! | TTTTTTCGATTTAAAACATC+TGG | + | chr3_1:91248960-91248979 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATCGAAAAAAAC+AGG | - | chr3_1:91248962-91248981 | Msa0387330:CDS | 20.0% |
| !! | AAAAAACACAATGCAAAATA+AGG | + | chr3_1:91249005-91249024 | None:intergenic | 20.0% |
| !!! | TTATTTTGCATTGTGTTTTT+TGG | - | chr3_1:91249004-91249023 | Msa0387330:CDS | 20.0% |
| !! | TGTTAATCCATATATGAATT+TGG | - | chr3_1:91249191-91249210 | Msa0387330:CDS | 20.0% |
| !!! | CAATTTTCCAAATTCATATA+TGG | + | chr3_1:91249201-91249220 | None:intergenic | 20.0% |
| !! | ATAATTCATCTTCATTTATG+TGG | - | chr3_1:91249859-91249878 | Msa0387330:intron | 20.0% |
| !! | ATTGTAACTTCTCAAATTTA+AGG | - | chr3_1:91250017-91250036 | Msa0387330:intron | 20.0% |
| !! | AAATTCAGTTCAAATTCATT+TGG | + | chr3_1:91250539-91250558 | None:intergenic | 20.0% |
| !! | TTATCATTTGTTTCAATCAT+AGG | - | chr3_1:91250579-91250598 | Msa0387330:CDS | 20.0% |
| !! | CAAATTTAATGATTCCATAT+TGG | - | chr3_1:91251145-91251164 | Msa0387330:CDS | 20.0% |
| !! | TTAATAAGCAAAGTGAATTA+AGG | - | chr3_1:91251253-91251272 | Msa0387330:CDS | 20.0% |
| !!! | ATCATATTGATTGATGATTT+TGG | - | chr3_1:91251376-91251395 | Msa0387330:five_prime_UTR | 20.0% |
| !!! | TCATATTGATTGATGATTTT+GGG | - | chr3_1:91251377-91251396 | Msa0387330:five_prime_UTR | 20.0% |
| !! | TATATGATTTCTCTTGAAAA+GGG | - | chr3_1:91251450-91251469 | Msa0387330:five_prime_UTR | 20.0% |
| ! | AAATCGAAAAAAACAGGTAA+TGG | - | chr3_1:91248968-91248987 | Msa0387330:CDS | 25.0% |
| ! | GAAAAAAGGGTTAATCAAAA+AGG | + | chr3_1:91249065-91249084 | None:intergenic | 25.0% |
| !!! | TCAGAATAATTCTTTTTTCC+TGG | - | chr3_1:91249388-91249407 | Msa0387330:intron | 25.0% |
| !!! | AATGTTTTTGAATTGGTTGT+AGG | - | chr3_1:91249451-91249470 | Msa0387330:intron | 25.0% |
| !!! | ATGTTTTTGAATTGGTTGTA+GGG | - | chr3_1:91249452-91249471 | Msa0387330:intron | 25.0% |
| ! | AATAGAATATGTACACATTC+AGG | + | chr3_1:91249552-91249571 | None:intergenic | 25.0% |
| !! | ATCAAACATCTAAGTCTTTT+AGG | - | chr3_1:91249935-91249954 | Msa0387330:intron | 25.0% |
| !!! | TTAGCTGTTTTAAAGTTGAA+TGG | - | chr3_1:91250063-91250082 | Msa0387330:intron | 25.0% |
| !! | ATGGATTGTAGCATTTAATT+AGG | - | chr3_1:91250082-91250101 | Msa0387330:intron | 25.0% |
| ! | AGGGATAAAATAATTGATGA+GGG | + | chr3_1:91250118-91250137 | None:intergenic | 25.0% |
| ! | TAGGGATAAAATAATTGATG+AGG | + | chr3_1:91250119-91250138 | None:intergenic | 25.0% |
| ! | AATTGCAAAACACAAGAATT+TGG | + | chr3_1:91250467-91250486 | None:intergenic | 25.0% |
| !!! | TGAGAATGCTATTTCTTTTT+TGG | + | chr3_1:91250657-91250676 | None:intergenic | 25.0% |
| !!! | TAATGATTCCATATTGGTTT+AGG | - | chr3_1:91251151-91251170 | Msa0387330:CDS | 25.0% |
| ! | AGGTAAAATGAAAGTGAAAA+AGG | - | chr3_1:91251204-91251223 | Msa0387330:CDS | 25.0% |
| ! | GGTAAAATGAAAGTGAAAAA+GGG | - | chr3_1:91251205-91251224 | Msa0387330:CDS | 25.0% |
| ! | GTATATGATTTCTCTTGAAA+AGG | - | chr3_1:91251449-91251468 | Msa0387330:five_prime_UTR | 25.0% |
| ! | AAAAGGGTAAGTTTATGTTA+TGG | - | chr3_1:91251466-91251485 | Msa0387330:five_prime_UTR | 25.0% |
| ! | AAAGGGTAAGTTTATGTTAT+GGG | - | chr3_1:91251467-91251486 | Msa0387330:five_prime_UTR | 25.0% |
| ATTATATCACTCACCAAACT+AGG | - | chr3_1:91248550-91248569 | Msa0387330:three_prime_UTR | 30.0% | |
| ACAGAGTTGTTACAATTTGA+AGG | + | chr3_1:91248706-91248725 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGGAAAAGAGAA+GGG | + | chr3_1:91248739-91248758 | None:intergenic | 30.0% |
| !!! | AACGATCAAAGAGAGTTTTT+TGG | + | chr3_1:91248754-91248773 | None:intergenic | 30.0% |
| !! | TTTTGTTTCAGATTCTGTCA+AGG | - | chr3_1:91248913-91248932 | Msa0387330:CDS | 30.0% |
| ATAAGAGGAGTCTGAAAAAA+GGG | + | chr3_1:91249078-91249097 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGATGTG+TGG | - | chr3_1:91249206-91249225 | Msa0387330:CDS | 30.0% | |
| TGGAAACTATGAAAATCTTC+AGG | - | chr3_1:91249226-91249245 | Msa0387330:intron | 30.0% | |
| !! | TCAGGTTTTGATGTTTGATA+CGG | - | chr3_1:91249244-91249263 | Msa0387330:intron | 30.0% |
| TTGATGTTTGATACGGTTAA+TGG | - | chr3_1:91249251-91249270 | Msa0387330:intron | 30.0% | |
| ! | TTACACTATGCTGCTTATTA+TGG | - | chr3_1:91249284-91249303 | Msa0387330:intron | 30.0% |
| !! | TAGCTTTAAGGCAAGAAAAA+TGG | + | chr3_1:91249310-91249329 | None:intergenic | 30.0% |
| ! | CAGAAGAAAGAATAGCTTTA+AGG | + | chr3_1:91249322-91249341 | None:intergenic | 30.0% |
| !! | TGTTTTTGAATTGGTTGTAG+GGG | - | chr3_1:91249453-91249472 | Msa0387330:intron | 30.0% |
| GTACATATTCTATTAGACAG+TGG | - | chr3_1:91249558-91249577 | Msa0387330:CDS | 30.0% | |
| ACTGATCTCTCAATATTCTA+TGG | - | chr3_1:91249616-91249635 | Msa0387330:CDS | 30.0% | |
| TGATTGTATTCGTGAATTGT+TGG | - | chr3_1:91249761-91249780 | Msa0387330:intron | 30.0% | |
| TCTTCATTTATGTGGCTTAT+TGG | - | chr3_1:91249867-91249886 | Msa0387330:intron | 30.0% | |
| GGGATAAAATAATTGATGAG+GGG | + | chr3_1:91250117-91250136 | None:intergenic | 30.0% | |
| CCAAACAACATGAAAATCTA+GGG | + | chr3_1:91250137-91250156 | None:intergenic | 30.0% | |
| ACCAAACAACATGAAAATCT+AGG | + | chr3_1:91250138-91250157 | None:intergenic | 30.0% | |
| ATTCATCAGTGAACTTAATC+CGG | - | chr3_1:91250272-91250291 | Msa0387330:intron | 30.0% | |
| AAGGGAGAAAGATATAATGA+AGG | - | chr3_1:91250341-91250360 | Msa0387330:CDS | 30.0% | |
| AGGGAGAAAGATATAATGAA+GGG | - | chr3_1:91250342-91250361 | Msa0387330:CDS | 30.0% | |
| AAGAAATAGCATTCTCATTG+TGG | - | chr3_1:91250660-91250679 | Msa0387330:CDS | 30.0% | |
| TGTGGAATATGATATTATGC+AGG | - | chr3_1:91250678-91250697 | Msa0387330:intron | 30.0% | |
| ACAATTGAAGTTCAGAATTG+TGG | - | chr3_1:91250745-91250764 | Msa0387330:intron | 30.0% | |
| AAGCAACATAGTTAGACTTA+TGG | - | chr3_1:91250867-91250886 | Msa0387330:intron | 30.0% | |
| GTTCAAAGATAAACAAGTTG+AGG | - | chr3_1:91250947-91250966 | Msa0387330:intron | 30.0% | |
| ! | TCACTTTCATTTTACCTTGA+TGG | + | chr3_1:91251201-91251220 | None:intergenic | 30.0% |
| AAATGAAAGTGAAAAAGGGA+AGG | - | chr3_1:91251209-91251228 | Msa0387330:CDS | 30.0% | |
| AATTAAGGCAAAGAAGTTCA+AGG | - | chr3_1:91251268-91251287 | Msa0387330:CDS | 30.0% | |
| CAATTTGAAGGTTACCTTGT+TGG | + | chr3_1:91248694-91248713 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGTGGAAAAGAGA+AGG | + | chr3_1:91248740-91248759 | None:intergenic | 35.0% |
| !!! | GATCAAAGAGAGTTTTTTGG+TGG | + | chr3_1:91248751-91248770 | None:intergenic | 35.0% |
| AAAAAGAATTCACCTCGATC+TGG | + | chr3_1:91248808-91248827 | None:intergenic | 35.0% | |
| AGCAGAAATGCCAGAAAATA+AGG | + | chr3_1:91248831-91248850 | None:intergenic | 35.0% | |
| ! | ATTCTGTCAAGGCTTTTACA+TGG | - | chr3_1:91248924-91248943 | Msa0387330:CDS | 35.0% |
| ! | CGAAAAAAACAGGTAATGGT+TGG | - | chr3_1:91248972-91248991 | Msa0387330:CDS | 35.0% |
| !!! | CATTGTGTTTTTTGGCATGT+TGG | - | chr3_1:91249012-91249031 | Msa0387330:CDS | 35.0% |
| CATAAGAGGAGTCTGAAAAA+AGG | + | chr3_1:91249079-91249098 | None:intergenic | 35.0% | |
| ! | TTTTCAGACTCCTCTTATGT+TGG | - | chr3_1:91249080-91249099 | Msa0387330:CDS | 35.0% |
| ! | AAGCTGGTGCTAATGTAATT+TGG | - | chr3_1:91249145-91249164 | Msa0387330:CDS | 35.0% |
| ATCAAAGTCAAAGTCAATCC+AGG | + | chr3_1:91249409-91249428 | None:intergenic | 35.0% | |
| TGTGAATGTTAGAGATGGAA+AGG | - | chr3_1:91249488-91249507 | Msa0387330:intron | 35.0% | |
| GTGAATGTTAGAGATGGAAA+GGG | - | chr3_1:91249489-91249508 | Msa0387330:intron | 35.0% | |
| ! | TTGAAATTTTGCAGCTATCC+TGG | - | chr3_1:91249699-91249718 | Msa0387330:CDS | 35.0% |
| TATTCGTGAATTGTTGGCAT+GGG | - | chr3_1:91249767-91249786 | Msa0387330:intron | 35.0% | |
| !! | GTGGCTTATTGGTTTGTATA+TGG | - | chr3_1:91249878-91249897 | Msa0387330:intron | 35.0% |
| ! | CCCTAGATTTTCATGTTGTT+TGG | - | chr3_1:91250134-91250153 | Msa0387330:CDS | 35.0% |
| TGTTTCATAGCAACCATGTA+TGG | + | chr3_1:91250180-91250199 | None:intergenic | 35.0% | |
| AGTTCACTGATGAATTTCAG+TGG | + | chr3_1:91250267-91250286 | None:intergenic | 35.0% | |
| ! | CATCAAAGCTTGTTCTAACA+AGG | + | chr3_1:91250307-91250326 | None:intergenic | 35.0% |
| ! | CTTGTTAGAACAAGCTTTGA+TGG | - | chr3_1:91250305-91250324 | Msa0387330:intron | 35.0% |
| GGGAGAAAGATATAATGAAG+GGG | - | chr3_1:91250343-91250362 | Msa0387330:CDS | 35.0% | |
| TCTACACAATCTGATTGTGA+TGG | + | chr3_1:91250390-91250409 | None:intergenic | 35.0% | |
| CAAAAGGAGTCAAATTACCT+CGG | + | chr3_1:91250424-91250443 | None:intergenic | 35.0% | |
| GGCTGAGAGATTTGATTATT+TGG | - | chr3_1:91250600-91250619 | Msa0387330:CDS | 35.0% | |
| GAGTTATAGAAGTAGTTGTC+GGG | + | chr3_1:91250825-91250844 | None:intergenic | 35.0% | |
| GGAGTTATAGAAGTAGTTGT+CGG | + | chr3_1:91250826-91250845 | None:intergenic | 35.0% | |
| ! | ACTATGTTGCTTCGACAAAA+TGG | + | chr3_1:91250859-91250878 | None:intergenic | 35.0% |
| TGATAAAGAATGATGCACAG+TGG | - | chr3_1:91251080-91251099 | Msa0387330:intron | 35.0% | |
| !! | ATTCCATATTGGTTTAGGCA+CGG | - | chr3_1:91251156-91251175 | Msa0387330:CDS | 35.0% |
| GACATATCTCCAACAACATT+TGG | + | chr3_1:91251300-91251319 | None:intergenic | 35.0% | |
| ATGTTGTTGGAGATATGTCA+AGG | - | chr3_1:91251301-91251320 | Msa0387330:exon | 35.0% | |
| ATATCACTCACCAAACTAGG+TGG | - | chr3_1:91248553-91248572 | Msa0387330:three_prime_UTR | 40.0% | |
| ! | AACTTCACCTCTGGTTTGAA+TGG | + | chr3_1:91248584-91248603 | None:intergenic | 40.0% |
| TGCAGAGGTAACAATGATCA+TGG | - | chr3_1:91248653-91248672 | Msa0387330:three_prime_UTR | 40.0% | |
| TTAGCAGCAGCAATATGAAG+AGG | + | chr3_1:91248782-91248801 | None:intergenic | 40.0% | |
| CTTCATATTGCTGCTGCTAA+TGG | - | chr3_1:91248782-91248801 | Msa0387330:three_prime_UTR | 40.0% | |
| TTCTGCTCAATCTAGTCATG+TGG | - | chr3_1:91249337-91249356 | Msa0387330:intron | 40.0% | |
| ! | TTGGTTGTAGGGGATTTGTT+CGG | - | chr3_1:91249463-91249482 | Msa0387330:intron | 40.0% |
| CGGTTTGTGAATGTTAGAGA+TGG | - | chr3_1:91249483-91249502 | Msa0387330:intron | 40.0% | |
| TGTCGAGATGCCAAATGTAA+CGG | + | chr3_1:91249522-91249541 | None:intergenic | 40.0% | |
| ATTTGGCATCTCGACAAAGT+CGG | - | chr3_1:91249526-91249545 | Msa0387330:CDS | 40.0% | |
| AGATCAGTACCCATATCTAC+CGG | + | chr3_1:91249604-91249623 | None:intergenic | 40.0% | |
| GTATTCGTGAATTGTTGGCA+TGG | - | chr3_1:91249766-91249785 | Msa0387330:intron | 40.0% | |
| ATTCGTGAATTGTTGGCATG+GGG | - | chr3_1:91249768-91249787 | Msa0387330:intron | 40.0% | |
| GTATTCAGCGTGATTCATCT+GGG | - | chr3_1:91249799-91249818 | Msa0387330:intron | 40.0% | |
| GTTGCTATGAAACACAGACA+CGG | - | chr3_1:91250186-91250205 | Msa0387330:CDS | 40.0% | |
| AGCAGATGTAGGATTTAGCA+AGG | + | chr3_1:91250223-91250242 | None:intergenic | 40.0% | |
| CTGATGAATTTCAGTGGAGA+TGG | + | chr3_1:91250261-91250280 | None:intergenic | 40.0% | |
| ! | AGCTTGTTCTAACAAGGCTT+TGG | + | chr3_1:91250301-91250320 | None:intergenic | 40.0% |
| ! | TGATGGATGCAAACAGAGAA+AGG | - | chr3_1:91250322-91250341 | Msa0387330:intron | 40.0% |
| GATGGATGCAAACAGAGAAA+GGG | - | chr3_1:91250323-91250342 | Msa0387330:intron | 40.0% | |
| ! | CAATCTGATTGTGATGGAGA+CGG | + | chr3_1:91250384-91250403 | None:intergenic | 40.0% |
| TGTAGATGACAATATCTCCG+AGG | - | chr3_1:91250404-91250423 | Msa0387330:CDS | 40.0% | |
| ATGTGCATTGTGCACACATT+TGG | + | chr3_1:91250774-91250793 | None:intergenic | 40.0% | |
| !! | CGGTTTGTTGTAGCAACAAA+GGG | + | chr3_1:91250800-91250819 | None:intergenic | 40.0% |
| !! | TCGGTTTGTTGTAGCAACAA+AGG | + | chr3_1:91250801-91250820 | None:intergenic | 40.0% |
| ATAGAAGTAGTTGTCGGGTT+CGG | + | chr3_1:91250820-91250839 | None:intergenic | 40.0% | |
| CTTCGACAAAATGGACAAAC+TGG | + | chr3_1:91250850-91250869 | None:intergenic | 40.0% | |
| TACCGCTGTCGTTCAAATTT+CGG | + | chr3_1:91250978-91250997 | None:intergenic | 40.0% | |
| ! | GGATTATCTAGTGTGTCGTT+CGG | - | chr3_1:91251012-91251031 | Msa0387330:intron | 40.0% |
| TTACCGTGCCTAAACCAATA+TGG | + | chr3_1:91251162-91251181 | None:intergenic | 40.0% | |
| AAGTGTGTGCTTAACCATCA+AGG | - | chr3_1:91251184-91251203 | Msa0387330:CDS | 40.0% | |
| AAGGCAAAGAAGTTCAAGGT+AGG | - | chr3_1:91251272-91251291 | Msa0387330:CDS | 40.0% | |
| AGGTAGGTACCAAATGTTGT+TGG | - | chr3_1:91251288-91251307 | Msa0387330:exon | 40.0% | |
| CTGACTGTGTCAGTGAATAG+CGG | + | chr3_1:91248360-91248379 | None:intergenic | 45.0% | |
| AATGGATGAGCCACCTAGTT+TGG | + | chr3_1:91248566-91248585 | None:intergenic | 45.0% | |
| AAGTGGTTGAACTTCACCTC+TGG | + | chr3_1:91248593-91248612 | None:intergenic | 45.0% | |
| AAGACCTTGACCCATGTTGT+CGG | + | chr3_1:91248630-91248649 | None:intergenic | 45.0% | |
| CTCTTCATTGCTGTCCAACA+AGG | - | chr3_1:91248677-91248696 | Msa0387330:three_prime_UTR | 45.0% | |
| TGCATTGCAGCCAACATAAG+AGG | + | chr3_1:91249093-91249112 | None:intergenic | 45.0% | |
| ! | CTTATGTTGGCTGCAATGCA+TGG | - | chr3_1:91249093-91249112 | Msa0387330:CDS | 45.0% |
| CGTATTCAGCGTGATTCATC+TGG | - | chr3_1:91249798-91249817 | Msa0387330:intron | 45.0% | |
| !! | GTTGTTTGGTGCGTTTATGC+AGG | - | chr3_1:91250148-91250167 | Msa0387330:CDS | 45.0% |
| ATGCAGGCGTATACCATACA+TGG | - | chr3_1:91250164-91250183 | Msa0387330:CDS | 45.0% | |
| ! | TCTAACAAGGCTTTGGCTTC+CGG | + | chr3_1:91250294-91250313 | None:intergenic | 45.0% |
| CGACAAAATGGACAAACTGG+TGG | + | chr3_1:91250847-91250866 | None:intergenic | 45.0% | |
| CTCCGAAATTTGAACGACAG+CGG | - | chr3_1:91250973-91250992 | Msa0387330:CDS | 45.0% | |
| ! | TAGTGTGTCGTTCGGAAAGT+TGG | - | chr3_1:91251020-91251039 | Msa0387330:intron | 45.0% |
| ! | AGTGTGTCGTTCGGAAAGTT+GGG | - | chr3_1:91251021-91251040 | Msa0387330:intron | 45.0% |
| GAGAGAGAGAGAGAGAGAGA+TGG | + | chr3_1:91248386-91248405 | None:intergenic | 50.0% | |
| GGCTCATCCATTCAAACCAG+AGG | - | chr3_1:91248574-91248593 | Msa0387330:three_prime_UTR | 50.0% | |
| AGACCTTGACCCATGTTGTC+GGG | + | chr3_1:91248629-91248648 | None:intergenic | 50.0% | |
| GGTCAAGGTCTTAGTTGCAG+AGG | - | chr3_1:91248638-91248657 | Msa0387330:three_prime_UTR | 50.0% | |
| ! | TGTTGGCTGCAATGCATGGA+AGG | - | chr3_1:91249097-91249116 | Msa0387330:CDS | 50.0% |
| GCATGGAAGGATTGCATGTG+TGG | - | chr3_1:91249110-91249129 | Msa0387330:CDS | 50.0% | |
| GTGGAGAAGCTACTTGAAGC+TGG | - | chr3_1:91249129-91249148 | Msa0387330:CDS | 50.0% | |
| CTAGTCATGTGGCTGCTTCT+TGG | - | chr3_1:91249348-91249367 | Msa0387330:intron | 50.0% | |
| ! | GCTCTTGTTTGTGCTTCGAC+CGG | - | chr3_1:91249582-91249601 | Msa0387330:CDS | 50.0% |
| TGTGCTTCGACCGGTAGATA+TGG | - | chr3_1:91249591-91249610 | Msa0387330:CDS | 50.0% | |
| GTGCTTCGACCGGTAGATAT+GGG | - | chr3_1:91249592-91249611 | Msa0387330:CDS | 50.0% | |
| !! | AGATGAAGGGGAGTACTTCC+AGG | + | chr3_1:91249720-91249739 | None:intergenic | 50.0% |
| CCTCTAGCAGCAAGATGAAG+GGG | + | chr3_1:91249732-91249751 | None:intergenic | 50.0% | |
| CCCTCTAGCAGCAAGATGAA+GGG | + | chr3_1:91249733-91249752 | None:intergenic | 50.0% | |
| CCCTTCATCTTGCTGCTAGA+GGG | - | chr3_1:91249730-91249749 | Msa0387330:CDS | 50.0% | |
| CCTTCATCTTGCTGCTAGAG+GGG | - | chr3_1:91249731-91249750 | Msa0387330:CDS | 50.0% | |
| CTTCATCTTGCTGCTAGAGG+GGG | - | chr3_1:91249732-91249751 | Msa0387330:CDS | 50.0% | |
| TTCATCTTGCTGCTAGAGGG+GGG | - | chr3_1:91249733-91249752 | Msa0387330:CDS | 50.0% | |
| CAGCGTGATTCATCTGGGTA+TGG | - | chr3_1:91249804-91249823 | Msa0387330:intron | 50.0% | |
| ACAAGAGGCTCAGCAGATGT+AGG | + | chr3_1:91250234-91250253 | None:intergenic | 50.0% | |
| CATCTGCTGAGCCTCTTGTT+TGG | - | chr3_1:91250235-91250254 | Msa0387330:intron | 50.0% | |
| AGTGGAGATGGCCAAACAAG+AGG | + | chr3_1:91250249-91250268 | None:intergenic | 50.0% | |
| TATGTGTGCACGCGGACAAA+AGG | + | chr3_1:91250440-91250459 | None:intergenic | 50.0% | |
| TTGGTGTGTATGTGTGCACG+CGG | + | chr3_1:91250448-91250467 | None:intergenic | 50.0% | |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | - | chr3_1:91250717-91250736 | Msa0387330:intron | 50.0% |
| AGCGGTAGTAGCAGCTTCAA+AGG | - | chr3_1:91250991-91251010 | Msa0387330:CDS | 50.0% | |
| CAGCAACCCTTCCTGAACTT+CGG | + | chr3_1:91251050-91251069 | None:intergenic | 50.0% | |
| ATGATGCACAGTGGCTAGTG+TGG | - | chr3_1:91251089-91251108 | Msa0387330:intron | 50.0% | |
| GACCTTGACCCATGTTGTCG+GGG | + | chr3_1:91248628-91248647 | None:intergenic | 55.0% | |
| TGCTGCTAATGGCCAGATCG+AGG | - | chr3_1:91248793-91248812 | Msa0387330:three_prime_UTR | 55.0% | |
| CCCCTTCATCTTGCTGCTAG+AGG | - | chr3_1:91249729-91249748 | Msa0387330:CDS | 55.0% | |
| CCCCTCTAGCAGCAAGATGA+AGG | + | chr3_1:91249734-91249753 | None:intergenic | 55.0% | |
| AAGTTGGGCGTCCGAAGTTC+AGG | - | chr3_1:91251036-91251055 | Msa0387330:intron | 55.0% | |
| CAGGAAGGGTTGCTGCTGAA+TGG | - | chr3_1:91251055-91251074 | Msa0387330:intron | 55.0% | |
| TTCCCCTCTCCCCGACAACA+TGG | - | chr3_1:91248616-91248635 | Msa0387330:three_prime_UTR | 60.0% | |
| TCCCCTCTCCCCGACAACAT+GGG | - | chr3_1:91248617-91248636 | Msa0387330:three_prime_UTR | 60.0% | |
| ACCCATGTTGTCGGGGAGAG+GGG | + | chr3_1:91248621-91248640 | None:intergenic | 60.0% | |
| GACCCATGTTGTCGGGGAGA+GGG | + | chr3_1:91248622-91248641 | None:intergenic | 60.0% | |
| TGACCCATGTTGTCGGGGAG+AGG | + | chr3_1:91248623-91248642 | None:intergenic | 60.0% | |
| CTCCCCGACAACATGGGTCA+AGG | - | chr3_1:91248623-91248642 | Msa0387330:three_prime_UTR | 60.0% | |
| GGGTGCGACGCCGTTACATT+TGG | - | chr3_1:91249509-91249528 | Msa0387330:intron | 60.0% | |
| TGGGCGTCCGAAGTTCAGGA+AGG | - | chr3_1:91251040-91251059 | Msa0387330:intron | 60.0% | |
| GGGCGTCCGAAGTTCAGGAA+GGG | - | chr3_1:91251041-91251060 | Msa0387330:intron | 60.0% | |
| CGGGGAGAGGGGAAGTGAAG+TGG | + | chr3_1:91248610-91248629 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91248357 | 91251582 | 91248357 | ID=Msa0387330;Name=Msa0387330 |
| chr3_1 | mRNA | 91248357 | 91251582 | 91248357 | ID=Msa0387330-mRNA-1;Parent=Msa0387330;Name=Msa0387330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=258|1|1|1|0.87|0.77|9|490|443 |
| chr3_1 | exon | 91248357 | 91249239 | 91248357 | ID=Msa0387330-mRNA-1:exon:25429;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91249514 | 91249769 | 91249514 | ID=Msa0387330-mRNA-1:exon:25428;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91250119 | 91250226 | 91250119 | ID=Msa0387330-mRNA-1:exon:25427;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91250326 | 91250466 | 91250326 | ID=Msa0387330-mRNA-1:exon:25426;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91250570 | 91250691 | 91250570 | ID=Msa0387330-mRNA-1:exon:25425;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91250781 | 91250852 | 91250781 | ID=Msa0387330-mRNA-1:exon:25424;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91250956 | 91251015 | 91250956 | ID=Msa0387330-mRNA-1:exon:25423;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91251125 | 91251532 | 91251125 | ID=Msa0387330-mRNA-1:exon:25422;Parent=Msa0387330-mRNA-1 |
| chr3_1 | exon | 91251553 | 91251582 | 91251553 | ID=Msa0387330-mRNA-1:exon:25421;Parent=Msa0387330-mRNA-1 |
| chr3_1 | five_prime_UTR | 91251553 | 91251582 | 91251553 | ID=Msa0387330-mRNA-1:five_prime_utr;Parent=Msa0387330-mRNA-1 |
| chr3_1 | five_prime_UTR | 91251305 | 91251532 | 91251305 | ID=Msa0387330-mRNA-1:five_prime_utr;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91251125 | 91251304 | 91251125 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91250956 | 91251015 | 91250956 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91250781 | 91250852 | 91250781 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91250570 | 91250691 | 91250570 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91250326 | 91250466 | 91250326 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91250119 | 91250226 | 91250119 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91249514 | 91249769 | 91249514 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | CDS | 91248847 | 91249239 | 91248847 | ID=Msa0387330-mRNA-1:cds;Parent=Msa0387330-mRNA-1 |
| chr3_1 | three_prime_UTR | 91248357 | 91248846 | 91248357 | ID=Msa0387330-mRNA-1:three_prime_utr;Parent=Msa0387330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
