Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339220 | XP_013465385.1 | 98.194 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339220 | sp|Q94B55|XB31_ARATH | 67.706 | 449 | 132 | 4 | 1 | 438 | 1 | 447 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222830 | Msa0339220 | 0.852606 | 4.134954e-61 | -8.615850e-47 |
| Msa0264270 | Msa0339220 | 0.871489 | 6.574614e-67 | -8.615850e-47 |
| Msa0339220 | Msa0387330 | 0.889533 | 2.224538e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339220 | MtrunA17_Chr2g0328031 | 98.194 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 0.0 | 905 |
| Msa0339220 | MtrunA17_Chr4g0031491 | 74.273 | 447 | 109 | 5 | 1 | 443 | 1 | 445 | 0.0 | 684 |
| Msa0339220 | MtrunA17_Chr4g0010051 | 61.827 | 427 | 148 | 7 | 18 | 438 | 25 | 442 | 0.0 | 522 |
| Msa0339220 | MtrunA17_Chr6g0472461 | 30.752 | 452 | 233 | 12 | 1 | 403 | 1 | 421 | 1.15e-44 | 162 |
| Msa0339220 | MtrunA17_Chr4g0073161 | 32.010 | 403 | 214 | 12 | 1 | 376 | 7 | 376 | 2.13e-41 | 154 |
| Msa0339220 | MtrunA17_Chr1g0203651 | 29.766 | 299 | 157 | 11 | 88 | 376 | 1 | 256 | 1.55e-21 | 95.9 |
| Msa0339220 | MtrunA17_Chr1g0212971 | 31.220 | 205 | 122 | 4 | 14 | 215 | 134 | 322 | 1.14e-18 | 88.6 |
| Msa0339220 | MtrunA17_Chr7g0276681 | 29.661 | 236 | 125 | 8 | 15 | 219 | 85 | 310 | 1.86e-17 | 84.7 |
| Msa0339220 | MtrunA17_Chr7g0263421 | 31.429 | 245 | 131 | 9 | 5 | 219 | 41 | 278 | 2.59e-17 | 84.3 |
| Msa0339220 | MtrunA17_Chr2g0327711 | 29.796 | 245 | 133 | 9 | 5 | 218 | 58 | 294 | 4.16e-15 | 77.4 |
| Msa0339220 | MtrunA17_Chr2g0293861 | 31.875 | 160 | 97 | 5 | 25 | 181 | 10 | 160 | 4.59e-15 | 73.9 |
| Msa0339220 | MtrunA17_Chr1g0196261 | 33.333 | 183 | 108 | 6 | 45 | 218 | 252 | 429 | 7.58e-15 | 76.3 |
| Msa0339220 | MtrunA17_Chr7g0263471 | 30.332 | 211 | 125 | 5 | 11 | 215 | 120 | 314 | 5.80e-14 | 73.9 |
| Msa0339220 | MtrunA17_Chr4g0030551 | 28.095 | 210 | 126 | 4 | 12 | 215 | 71 | 261 | 1.40e-13 | 72.8 |
| Msa0339220 | MtrunA17_Chr1g0161231 | 26.471 | 238 | 142 | 9 | 11 | 232 | 53 | 273 | 2.00e-13 | 72.0 |
| Msa0339220 | MtrunA17_Chr7g0274241 | 27.138 | 269 | 163 | 6 | 18 | 259 | 21 | 283 | 6.51e-13 | 70.5 |
| Msa0339220 | MtrunA17_Chr6g0461061 | 25.974 | 231 | 140 | 4 | 25 | 240 | 141 | 355 | 2.55e-12 | 68.9 |
| Msa0339220 | MtrunA17_Chr6g0461061 | 29.032 | 217 | 139 | 4 | 47 | 253 | 244 | 455 | 2.62e-12 | 68.6 |
| Msa0339220 | MtrunA17_Chr5g0439191 | 31.884 | 138 | 79 | 4 | 49 | 181 | 8 | 135 | 3.42e-12 | 65.1 |
| Msa0339220 | MtrunA17_Chr5g0406201 | 29.240 | 171 | 104 | 3 | 45 | 215 | 300 | 453 | 1.18e-11 | 66.6 |
| Msa0339220 | MtrunA17_Chr1g0211241 | 26.471 | 238 | 150 | 8 | 15 | 247 | 139 | 356 | 3.55e-11 | 65.5 |
| Msa0339220 | MtrunA17_Chr7g0262761 | 29.560 | 159 | 100 | 4 | 15 | 168 | 48 | 199 | 3.93e-11 | 62.4 |
| Msa0339220 | MtrunA17_Chr2g0303671 | 30.065 | 153 | 94 | 2 | 30 | 182 | 132 | 271 | 4.16e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339220 | AT2G28840.1 | 67.706 | 449 | 132 | 4 | 1 | 438 | 1 | 447 | 0.0 | 626 |
| Msa0339220 | AT2G28840.2 | 71.053 | 380 | 97 | 4 | 70 | 438 | 56 | 433 | 0.0 | 560 |
| Msa0339220 | AT5G07270.1 | 31.658 | 398 | 215 | 10 | 1 | 373 | 1 | 366 | 4.05e-41 | 153 |
| Msa0339220 | AT5G57740.1 | 31.188 | 404 | 213 | 10 | 1 | 373 | 7 | 376 | 6.89e-39 | 147 |
| Msa0339220 | AT5G02620.4 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.45e-19 | 90.5 |
| Msa0339220 | AT5G02620.1 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.45e-19 | 90.5 |
| Msa0339220 | AT5G02620.3 | 29.021 | 286 | 164 | 13 | 12 | 277 | 57 | 323 | 3.45e-19 | 90.5 |
| Msa0339220 | AT5G02620.5 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.04e-17 | 85.1 |
| Msa0339220 | AT5G02620.2 | 30.097 | 206 | 119 | 8 | 12 | 211 | 57 | 243 | 2.04e-17 | 85.1 |
| Msa0339220 | AT3G04710.3 | 30.000 | 300 | 166 | 11 | 22 | 294 | 249 | 531 | 2.27e-17 | 85.1 |
| Msa0339220 | AT3G04710.1 | 31.154 | 260 | 146 | 8 | 22 | 254 | 25 | 278 | 2.38e-17 | 84.3 |
| Msa0339220 | AT3G12360.2 | 30.556 | 216 | 132 | 5 | 14 | 225 | 120 | 321 | 4.64e-17 | 84.0 |
| Msa0339220 | AT3G12360.1 | 30.556 | 216 | 132 | 5 | 14 | 225 | 132 | 333 | 4.70e-17 | 84.0 |
| Msa0339220 | AT5G60070.1 | 29.864 | 221 | 123 | 6 | 14 | 206 | 76 | 292 | 2.24e-16 | 81.6 |
| Msa0339220 | AT3G04710.2 | 31.154 | 260 | 145 | 9 | 22 | 254 | 25 | 277 | 4.00e-16 | 80.9 |
| Msa0339220 | AT1G07710.2 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 1.78e-15 | 79.0 |
| Msa0339220 | AT1G07710.1 | 30.806 | 211 | 117 | 8 | 14 | 216 | 69 | 258 | 1.78e-15 | 79.0 |
| Msa0339220 | AT2G31820.1 | 27.372 | 274 | 175 | 8 | 15 | 278 | 193 | 452 | 5.66e-14 | 74.7 |
| Msa0339220 | AT3G09550.2 | 29.064 | 203 | 127 | 5 | 15 | 215 | 154 | 341 | 2.10e-13 | 72.8 |
| Msa0339220 | AT3G09550.1 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.10e-13 | 72.8 |
| Msa0339220 | AT3G09550.3 | 29.064 | 203 | 127 | 5 | 15 | 215 | 147 | 334 | 2.10e-13 | 72.8 |
| Msa0339220 | AT5G20350.1 | 29.204 | 226 | 124 | 8 | 50 | 247 | 35 | 252 | 4.29e-13 | 71.6 |
| Msa0339220 | AT5G51160.1 | 29.139 | 151 | 92 | 4 | 37 | 180 | 34 | 176 | 3.25e-11 | 65.5 |
Find 131 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATATTGATTGATGATTT+TGG | 0.077169 | 2_4:+60277290 | Msa0339220:three_prime_UTR |
| GAAGGAATAATATGTAATTT+TGG | 0.230377 | 2_4:+60277144 | Msa0339220:three_prime_UTR |
| TTACACTATGCTGCTTATTA+TGG | 0.234084 | 2_4:+60275200 | Msa0339220:CDS |
| CTAGTCATGTGGCTGCTTCT+TGG | 0.245814 | 2_4:+60275264 | Msa0339220:CDS |
| CAGAAGAAAGAATAGCTTTA+AGG | 0.264068 | 2_4:-60275235 | None:intergenic |
| AGGTAAAATGAAAGTGAAAA+AGG | 0.265617 | 2_4:+60277121 | Msa0339220:three_prime_UTR |
| ACTATGTTGCTTCGACAAAA+TGG | 0.280496 | 2_4:-60276773 | None:intergenic |
| TTGATGTTTGATACGGTTAA+TGG | 0.291932 | 2_4:+60275167 | Msa0339220:CDS |
| TAATGATTCCATATTGGTTT+AGG | 0.298295 | 2_4:+60277068 | Msa0339220:three_prime_UTR |
| TCTAACAAGGCTTTGGCTTC+CGG | 0.299067 | 2_4:-60276208 | None:intergenic |
| TTAATAAGCAAAGTGAATTA+AGG | 0.308364 | 2_4:+60277167 | Msa0339220:three_prime_UTR |
| CAAATTTAATGATTCCATAT+TGG | 0.311125 | 2_4:+60277062 | Msa0339220:three_prime_UTR |
| TACCGCTGTCGTTCAAATTT+CGG | 0.312482 | 2_4:-60276892 | None:intergenic |
| AAAGGGGAAGTTTATGTTAT+GGG | 0.322553 | 2_4:+60277381 | Msa0339220:three_prime_UTR |
| CTTGTTAGAACAAGCTTTGA+TGG | 0.323868 | 2_4:+60276222 | Msa0339220:CDS |
| CGTATTCAGCGTGATTCATC+TGG | 0.341209 | 2_4:+60275714 | Msa0339220:CDS |
| AAAAGGGGAAGTTTATGTTA+TGG | 0.349097 | 2_4:+60277380 | Msa0339220:three_prime_UTR |
| AAGTTGGGCGTCCGAAGTTC+AGG | 0.350071 | 2_4:+60276953 | Msa0339220:CDS |
| CTTCATATTGCTGCTGCTAA+TGG | 0.351267 | 2_4:+60274707 | Msa0339220:CDS |
| AACTTCACCTCTGGTTTGAA+TGG | 0.356592 | 2_4:-60274506 | None:intergenic |
| TGTGCTTCGACCGGTAGATA+TGG | 0.358247 | 2_4:+60275507 | Msa0339220:CDS |
| AATAGAATATGTACACATTC+AGG | 0.364281 | 2_4:-60275465 | None:intergenic |
| AAGCAACATAGTTAGACTTA+TGG | 0.364923 | 2_4:+60276784 | Msa0339220:CDS |
| GACATATCTCCAACAACATT+TGG | 0.375388 | 2_4:-60277211 | None:intergenic |
| TAGTGTGTCGTTCGGAAAGT+TGG | 0.387276 | 2_4:+60276937 | Msa0339220:CDS |
| AGCTTGTTCTAACAAGGCTT+TGG | 0.389126 | 2_4:-60276215 | None:intergenic |
| CATCTGCTGAGCCTCTTGTT+TGG | 0.394206 | 2_4:+60276152 | Msa0339220:CDS |
| CAATTTGAAGGTTACCTTGT+TGG | 0.396080 | 2_4:-60274616 | None:intergenic |
| GGGTGCGACGCCATTGCATT+TGG | 0.399811 | 2_4:+60275425 | Msa0339220:CDS |
| TTACCGTGCCTAAACCAATA+TGG | 0.402775 | 2_4:-60277076 | None:intergenic |
| TATATGATTTCTCTTGAAAA+GGG | 0.406182 | 2_4:+60277364 | Msa0339220:three_prime_UTR |
| AATGGATGAGCCACCTAGTT+TGG | 0.413371 | 2_4:-60274488 | None:intergenic |
| ACAGAGTTGTTACAATTTGA+AGG | 0.414832 | 2_4:-60274628 | None:intergenic |
| CCCTTCATCTTGCTGCTAGA+GGG | 0.415274 | 2_4:+60275646 | Msa0339220:CDS |
| GTATATGATTTCTCTTGAAA+AGG | 0.415878 | 2_4:+60277363 | Msa0339220:three_prime_UTR |
| CGCCCCATGCCAACAATTCA+CGG | 0.420392 | 2_4:-60275686 | None:intergenic |
| AGACCTTGACCCATGTTGTC+GGG | 0.433754 | 2_4:-60274551 | None:intergenic |
| AGTGTGTCGTTCGGAAAGTT+GGG | 0.435757 | 2_4:+60276938 | Msa0339220:CDS |
| TGATTGCATCCGTGAATTGT+TGG | 0.439780 | 2_4:+60275677 | Msa0339220:CDS |
| CTTCGACAAAATGGACAAAC+TGG | 0.445468 | 2_4:-60276764 | None:intergenic |
| CGGGGAGAGGGGAAGTTAAG+TGG | 0.445495 | 2_4:-60274532 | None:intergenic |
| AGATGAAGGGGAGTGCTTCC+AGG | 0.446577 | 2_4:-60275633 | None:intergenic |
| TGCATTGCAGCCAACATAAG+AGG | 0.455233 | 2_4:-60275006 | None:intergenic |
| CCCCTTCATCTTGCTGCTAG+AGG | 0.458363 | 2_4:+60275645 | Msa0339220:CDS |
| ATTCATCAGTGAACTTAATC+CGG | 0.460718 | 2_4:+60276189 | Msa0339220:CDS |
| CAGGAAGGGTTGCTGCTGAA+TGG | 0.461974 | 2_4:+60276972 | Msa0339220:CDS |
| AAGGGAGAAAGATATATTGA+AGG | 0.462497 | 2_4:+60276258 | Msa0339220:CDS |
| TGATGGATGCAAACAGAGAA+AGG | 0.466607 | 2_4:+60276239 | Msa0339220:CDS |
| GTGCTTCGACCGGTAGATAT+GGG | 0.467851 | 2_4:+60275508 | Msa0339220:CDS |
| CGGTTTGTTGTAGCAACAAA+GGG | 0.467861 | 2_4:-60276714 | None:intergenic |
| CCCCTCTAGCAGCAAGATGA+AGG | 0.471186 | 2_4:-60275647 | None:intergenic |
| TTGGTTGTAGGGGATTTGTT+CGG | 0.476243 | 2_4:+60275379 | Msa0339220:intron |
| GAGTTATAGAAGTAGTTGTC+GGG | 0.479062 | 2_4:-60276739 | None:intergenic |
| ATAGAAGTAGTTGTCGGGTT+CGG | 0.479189 | 2_4:-60276734 | None:intergenic |
| AAGTGGTTGAACTTCACCTC+TGG | 0.492479 | 2_4:-60274515 | None:intergenic |
| TGTTTCATAGCAACCATGTA+TGG | 0.499705 | 2_4:-60276094 | None:intergenic |
| GCTCTTGTTTGTGCTTCGAC+CGG | 0.500746 | 2_4:+60275498 | Msa0339220:CDS |
| GACCCATGTTGTCGGGGAGA+GGG | 0.500762 | 2_4:-60274544 | None:intergenic |
| CATCCGTGAATTGTTGGCAT+GGG | 0.502450 | 2_4:+60275683 | Msa0339220:CDS |
| AGGGAGAAAGATATATTGAA+GGG | 0.502605 | 2_4:+60276259 | Msa0339220:CDS |
| CTGATGAATTTCAGTGGAGA+TGG | 0.506025 | 2_4:-60276175 | None:intergenic |
| TGACCCATGTTGTCGGGGAG+AGG | 0.506252 | 2_4:-60274545 | None:intergenic |
| GGAGTTATAGAAGTAGTTGT+CGG | 0.511884 | 2_4:-60276740 | None:intergenic |
| AGGTAGGTACCAAATGTTGT+TGG | 0.515990 | 2_4:+60277202 | Msa0339220:three_prime_UTR |
| ATGCTGCATCTGCTTTGAGC+AGG | 0.517837 | 2_4:+60276634 | Msa0339220:CDS |
| ATTATATCACTCACCAAACT+AGG | 0.518766 | 2_4:+60274475 | Msa0339220:five_prime_UTR |
| CATCAAAGCTTGTTCTAACA+AGG | 0.519785 | 2_4:-60276221 | None:intergenic |
| CTTATGTTGGCTGCAATGCA+TGG | 0.523935 | 2_4:+60275009 | Msa0339220:CDS |
| ATGTGCATTGTGCACACATT+TGG | 0.527928 | 2_4:-60276688 | None:intergenic |
| CTTCATCTTGCTGCTAGAGG+GGG | 0.528164 | 2_4:+60275648 | Msa0339220:CDS |
| TTCCCCTCTCCCCGACAACA+TGG | 0.529521 | 2_4:+60274541 | Msa0339220:exon |
| ACCCATGTTGTCGGGGAGAG+GGG | 0.533190 | 2_4:-60274543 | None:intergenic |
| ACAATTGAAGTTCAGAATTG+TGG | 0.536648 | 2_4:+60276662 | Msa0339220:CDS |
| TGCAGAGGTAACAATGATCA+TGG | 0.538975 | 2_4:+60274578 | Msa0339220:CDS |
| AATTAAGGCAAAGAAGTTCA+AGG | 0.539651 | 2_4:+60277182 | Msa0339220:three_prime_UTR |
| CCCTCTAGCAGCAAGATGAA+GGG | 0.539664 | 2_4:-60275646 | None:intergenic |
| CCTTCATCTTGCTGCTAGAG+GGG | 0.539952 | 2_4:+60275647 | Msa0339220:CDS |
| TTCTGCTCAATCTAGTCATG+TGG | 0.540502 | 2_4:+60275253 | Msa0339220:CDS |
| TGTGAATGTTAGAGATGGAA+AGG | 0.540835 | 2_4:+60275404 | Msa0339220:CDS |
| ATGCAGGCGTATACCATACA+TGG | 0.545210 | 2_4:+60276081 | Msa0339220:intron |
| GGATTATCTAGTGTGTCGTT+CGG | 0.546546 | 2_4:+60276929 | Msa0339220:CDS |
| AAGACCTTGACCCATGTTGT+CGG | 0.549293 | 2_4:-60274552 | None:intergenic |
| TCGGTTTGTTGTAGCAACAA+AGG | 0.550398 | 2_4:-60276715 | None:intergenic |
| CTCTTCATTGCTGTCCAACA+AGG | 0.550538 | 2_4:+60274602 | Msa0339220:CDS |
| GCATCCGTGAATTGTTGGCA+TGG | 0.552155 | 2_4:+60275682 | Msa0339220:CDS |
| AGCGGTAGTAGCAGCTTCAA+AGG | 0.552358 | 2_4:+60276908 | Msa0339220:CDS |
| CGGTTTGTGAATGTTAGAGA+TGG | 0.552849 | 2_4:+60275399 | Msa0339220:CDS |
| GATGGATGCAAACAGAGAAA+GGG | 0.553678 | 2_4:+60276240 | Msa0339220:CDS |
| CTCCCCGACAACATGGGTCA+AGG | 0.556059 | 2_4:+60274548 | Msa0339220:exon |
| GTTCAAAGATAAACAAGTTG+AGG | 0.560709 | 2_4:+60276864 | Msa0339220:CDS |
| CAGCAACCCTTCCTGAACTT+CGG | 0.563206 | 2_4:-60276964 | None:intergenic |
| AAGTGTGTGCTTAACCATCA+AGG | 0.563219 | 2_4:+60277101 | Msa0339220:three_prime_UTR |
| ACAAGAGGCTCAGCAGATGT+AGG | 0.576412 | 2_4:-60276148 | None:intergenic |
| GCATGGAAGGATTGCATGTG+TGG | 0.582025 | 2_4:+60275026 | Msa0339220:CDS |
| TGTTGGCTGCAATGCATGGA+AGG | 0.583065 | 2_4:+60275013 | Msa0339220:CDS |
| GTGAATGTTAGAGATGGAAA+GGG | 0.588584 | 2_4:+60275405 | Msa0339220:CDS |
| ATGTTGTTGGAGATATGTCA+AGG | 0.595837 | 2_4:+60277215 | Msa0339220:three_prime_UTR |
| AGTTCACTGATGAATTTCAG+TGG | 0.597323 | 2_4:-60276181 | None:intergenic |
| TCTACACAATCTGATTGTGA+TGG | 0.598122 | 2_4:-60276304 | None:intergenic |
| GTGGAGAAGCTACTTGAAGC+TGG | 0.601028 | 2_4:+60275045 | Msa0339220:CDS |
| TGTCGAGATGCCAAATGCAA+TGG | 0.601204 | 2_4:-60275435 | None:intergenic |
| TTCATCTTGCTGCTAGAGGG+GGG | 0.602142 | 2_4:+60275649 | Msa0339220:CDS |
| TCCCCTCTCCCCGACAACAT+GGG | 0.602202 | 2_4:+60274542 | Msa0339220:exon |
| GACCTTGACCCATGTTGTCG+GGG | 0.603308 | 2_4:-60274550 | None:intergenic |
| ATATGATTTCTCTTGAAAAG+GGG | 0.604311 | 2_4:+60277365 | Msa0339220:three_prime_UTR |
| ATTTGGCATCTCGACAAAGA+CGG | 0.605579 | 2_4:+60275442 | Msa0339220:CDS |
| AGTGGAGATGGCCAAACAAG+AGG | 0.607832 | 2_4:-60276163 | None:intergenic |
| ATTCCATATTGGTTTAGGCA+CGG | 0.612688 | 2_4:+60277073 | Msa0339220:three_prime_UTR |
| AGATCAGTACCCATATCTAC+CGG | 0.613771 | 2_4:-60275517 | None:intergenic |
| AGCAGATGTAGGATTTAGCA+AGG | 0.613787 | 2_4:-60276137 | None:intergenic |
| TGGGCGTCCGAAGTTCAGGA+AGG | 0.616206 | 2_4:+60276957 | Msa0339220:CDS |
| GTATTCAGCGTGATTCATCT+GGG | 0.618936 | 2_4:+60275715 | Msa0339220:CDS |
| GGGCGTCCGAAGTTCAGGAA+GGG | 0.620530 | 2_4:+60276958 | Msa0339220:CDS |
| AAGGCAAAGAAGTTCAAGGT+AGG | 0.622174 | 2_4:+60277186 | Msa0339220:three_prime_UTR |
| ATCCGTGAATTGTTGGCATG+GGG | 0.623526 | 2_4:+60275684 | Msa0339220:CDS |
| CCTCTAGCAGCAAGATGAAG+GGG | 0.627465 | 2_4:-60275645 | None:intergenic |
| CAATCTGATTGTGATGGAGA+CGG | 0.634456 | 2_4:-60276298 | None:intergenic |
| CGACAAAATGGACAAACTGG+TGG | 0.636725 | 2_4:-60276761 | None:intergenic |
| TTAGCAGCAGCAATATGAAG+AGG | 0.637344 | 2_4:-60274704 | None:intergenic |
| GGCTCATCCATTCAAACCAG+AGG | 0.639756 | 2_4:+60274499 | Msa0339220:five_prime_UTR |
| GGTCAAGGTCTTAGTTGCAG+AGG | 0.642603 | 2_4:+60274563 | Msa0339220:CDS |
| GGGAGAAAGATATATTGAAG+GGG | 0.658402 | 2_4:+60276260 | Msa0339220:CDS |
| TGCTGCTAATGGCCAGATCG+AGG | 0.658793 | 2_4:+60274718 | Msa0339220:CDS |
| ATGATGCACAGTGGCTAGTG+TGG | 0.667440 | 2_4:+60277006 | Msa0339220:exon |
| CTCCGAAATTTGAACGACAG+CGG | 0.698163 | 2_4:+60276890 | Msa0339220:CDS |
| ATATCACTCACCAAACTAGG+TGG | 0.698905 | 2_4:+60274478 | Msa0339220:five_prime_UTR |
| GTACATATTCTATTAGACAG+TGG | 0.706959 | 2_4:+60275474 | Msa0339220:CDS |
| GTTGCTATGAAACACAGACA+CGG | 0.736330 | 2_4:+60276103 | Msa0339220:CDS |
| TGTAGATGACAATATCTCCG+AGG | 0.741974 | 2_4:+60276321 | Msa0339220:CDS |
| AAATACAAAAGAGAAAGACA+AGG | 0.747100 | 2_4:+60277474 | Msa0339220:three_prime_UTR |
| TGATAAAGAATGATGCACAG+TGG | 0.766592 | 2_4:+60276997 | Msa0339220:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATGTTTTTGAAT+TGG | + | chr2_4:60275360-60275379 | Msa0339220:intron | 10.0% |
| !!! | AATTATTCTGAAAAAGAAAA+AGG | - | chr2_4:60275295-60275314 | None:intergenic | 15.0% |
| !! | ATGAGTATTAAAACAAATTA+TGG | - | chr2_4:60275898-60275917 | None:intergenic | 15.0% |
| !!! | TATAATGCAAATTTTAAACT+TGG | - | chr2_4:60276543-60276562 | None:intergenic | 15.0% |
| !!! | TTGTATTTTTATTGCTAAAA+TGG | - | chr2_4:60277462-60277481 | None:intergenic | 15.0% |
| !!! | TTTTTTCGATTTAAAACATC+TGG | - | chr2_4:60274875-60274894 | None:intergenic | 20.0% |
| !!! | TGTTTTAAATCGAAAAAAAC+AGG | + | chr2_4:60274877-60274896 | Msa0339220:CDS | 20.0% |
| !! | AAAAAACACAATGCAAAATA+AGG | - | chr2_4:60274920-60274939 | None:intergenic | 20.0% |
| !!! | TTATTTTGCATTGTGTTTTT+TGG | + | chr2_4:60274919-60274938 | Msa0339220:intron | 20.0% |
| !! | AAAAAAAGGGTTAATCAAAA+AGG | - | chr2_4:60274980-60274999 | None:intergenic | 20.0% |
| !! | TGTTAATCCATATATGAATT+TGG | + | chr2_4:60275107-60275126 | Msa0339220:intron | 20.0% |
| !!! | CAATTTTCCAAATTCATATA+TGG | - | chr2_4:60275117-60275136 | None:intergenic | 20.0% |
| !! | ATAATTCATCTTCATTTATG+TGG | + | chr2_4:60275775-60275794 | Msa0339220:intron | 20.0% |
| !! | TAAATTTGAGAAGTTACAAT+AGG | - | chr2_4:60275933-60275952 | None:intergenic | 20.0% |
| !! | ATTGTAACTTCTCAAATTTA+AGG | + | chr2_4:60275933-60275952 | Msa0339220:intron | 20.0% |
| !! | AAATTCAGTTCAAATTCATT+TGG | - | chr2_4:60276456-60276475 | None:intergenic | 20.0% |
| !! | TTATCATTTGTTTCAATCAT+AGG | + | chr2_4:60276496-60276515 | Msa0339220:intron | 20.0% |
| !! | CAAATTTAATGATTCCATAT+TGG | + | chr2_4:60277062-60277081 | Msa0339220:three_prime_UTR | 20.0% |
| !!! | GAAGGAATAATATGTAATTT+TGG | + | chr2_4:60277144-60277163 | Msa0339220:three_prime_UTR | 20.0% |
| !! | TTAATAAGCAAAGTGAATTA+AGG | + | chr2_4:60277167-60277186 | Msa0339220:three_prime_UTR | 20.0% |
| !!! | ATCATATTGATTGATGATTT+TGG | + | chr2_4:60277290-60277309 | Msa0339220:three_prime_UTR | 20.0% |
| !!! | TCATATTGATTGATGATTTT+GGG | + | chr2_4:60277291-60277310 | Msa0339220:three_prime_UTR | 20.0% |
| !! | TATATGATTTCTCTTGAAAA+GGG | + | chr2_4:60277364-60277383 | Msa0339220:three_prime_UTR | 20.0% |
| !! | AATTCTTTTTCCTTATTCTC+TGG | + | chr2_4:60274743-60274762 | Msa0339220:intron | 25.0% |
| ! | AAATCGAAAAAAACAGGTAA+TGG | + | chr2_4:60274883-60274902 | Msa0339220:intron | 25.0% |
| !!! | TCAGAATAATTCTTTTTTCC+TGG | + | chr2_4:60275304-60275323 | Msa0339220:intron | 25.0% |
| !!! | AATGTTTTTGAATTGGTTGT+AGG | + | chr2_4:60275367-60275386 | Msa0339220:intron | 25.0% |
| !!! | ATGTTTTTGAATTGGTTGTA+GGG | + | chr2_4:60275368-60275387 | Msa0339220:intron | 25.0% |
| ! | AATAGAATATGTACACATTC+AGG | - | chr2_4:60275468-60275487 | None:intergenic | 25.0% |
| !! | ATCAAACATCTAAGTCTTAT+AGG | + | chr2_4:60275851-60275870 | Msa0339220:intron | 25.0% |
| !!! | TTAGCTGTTTTAAAGTTGAA+TGG | + | chr2_4:60275979-60275998 | Msa0339220:intron | 25.0% |
| !! | ATGGATTGTAGCATTTAATT+AGG | + | chr2_4:60275998-60276017 | Msa0339220:intron | 25.0% |
| ! | AGGGATAAAATAATTGATGA+GGG | - | chr2_4:60276035-60276054 | None:intergenic | 25.0% |
| ! | TAGGGATAAAATAATTGATG+AGG | - | chr2_4:60276036-60276055 | None:intergenic | 25.0% |
| ! | AATTGCAAAACACAAGAATT+TGG | - | chr2_4:60276384-60276403 | None:intergenic | 25.0% |
| !!! | TGAGAATGCTATTTCTTTTT+TGG | - | chr2_4:60276574-60276593 | None:intergenic | 25.0% |
| !!! | TAATGATTCCATATTGGTTT+AGG | + | chr2_4:60277068-60277087 | Msa0339220:three_prime_UTR | 25.0% |
| ! | AGGTAAAATGAAAGTGAAAA+AGG | + | chr2_4:60277121-60277140 | Msa0339220:three_prime_UTR | 25.0% |
| ! | GGTAAAATGAAAGTGAAAAA+GGG | + | chr2_4:60277122-60277141 | Msa0339220:three_prime_UTR | 25.0% |
| ! | GTATATGATTTCTCTTGAAA+AGG | + | chr2_4:60277363-60277382 | Msa0339220:three_prime_UTR | 25.0% |
| ! | ATATGATTTCTCTTGAAAAG+GGG | + | chr2_4:60277365-60277384 | Msa0339220:three_prime_UTR | 25.0% |
| ATTATATCACTCACCAAACT+AGG | + | chr2_4:60274475-60274494 | Msa0339220:five_prime_UTR | 30.0% | |
| ACAGAGTTGTTACAATTTGA+AGG | - | chr2_4:60274631-60274650 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGTGGAAAAGAGAA+GGG | - | chr2_4:60274664-60274683 | None:intergenic | 30.0% |
| !!! | AACGATCAAAGAGAGTTTTT+TGG | - | chr2_4:60274679-60274698 | None:intergenic | 30.0% |
| !! | TTTTGTTTCAGATTCTGTCA+AGG | + | chr2_4:60274828-60274847 | Msa0339220:intron | 30.0% |
| TAAGAGGAGTCTGAAAAAAA+GGG | - | chr2_4:60274993-60275012 | None:intergenic | 30.0% | |
| ATAAGAGGAGTCTGAAAAAA+AGG | - | chr2_4:60274994-60275013 | None:intergenic | 30.0% | |
| GAATTTGGAAAATTGATGTG+TGG | + | chr2_4:60275122-60275141 | Msa0339220:intron | 30.0% | |
| TGGAAACTATGAAAATCTTC+AGG | + | chr2_4:60275142-60275161 | Msa0339220:intron | 30.0% | |
| !! | TCAGGTTTTGATGTTTGATA+CGG | + | chr2_4:60275160-60275179 | Msa0339220:intron | 30.0% |
| TTGATGTTTGATACGGTTAA+TGG | + | chr2_4:60275167-60275186 | Msa0339220:CDS | 30.0% | |
| ! | TTACACTATGCTGCTTATTA+TGG | + | chr2_4:60275200-60275219 | Msa0339220:CDS | 30.0% |
| !! | TAGCTTTAAGGCAAGAAAAA+TGG | - | chr2_4:60275226-60275245 | None:intergenic | 30.0% |
| ! | CAGAAGAAAGAATAGCTTTA+AGG | - | chr2_4:60275238-60275257 | None:intergenic | 30.0% |
| !! | TGTTTTTGAATTGGTTGTAG+GGG | + | chr2_4:60275369-60275388 | Msa0339220:intron | 30.0% |
| GTACATATTCTATTAGACAG+TGG | + | chr2_4:60275474-60275493 | Msa0339220:CDS | 30.0% | |
| ACTGATCTCTCTAAATTCTA+TGG | + | chr2_4:60275532-60275551 | Msa0339220:intron | 30.0% | |
| TCTTCATTTATGTGGCTTAT+TGG | + | chr2_4:60275783-60275802 | Msa0339220:intron | 30.0% | |
| GGGATAAAATAATTGATGAG+GGG | - | chr2_4:60276034-60276053 | None:intergenic | 30.0% | |
| CCAAACAACATGAAAATCTA+GGG | - | chr2_4:60276054-60276073 | None:intergenic | 30.0% | |
| ACCAAACAACATGAAAATCT+AGG | - | chr2_4:60276055-60276074 | None:intergenic | 30.0% | |
| ATTCATCAGTGAACTTAATC+CGG | + | chr2_4:60276189-60276208 | Msa0339220:CDS | 30.0% | |
| AAGGGAGAAAGATATATTGA+AGG | + | chr2_4:60276258-60276277 | Msa0339220:CDS | 30.0% | |
| AGGGAGAAAGATATATTGAA+GGG | + | chr2_4:60276259-60276278 | Msa0339220:CDS | 30.0% | |
| AAGAAATAGCATTCTCATTG+TGG | + | chr2_4:60276577-60276596 | Msa0339220:intron | 30.0% | |
| TGTGGAATATGATATTATGC+AGG | + | chr2_4:60276595-60276614 | Msa0339220:intron | 30.0% | |
| ACAATTGAAGTTCAGAATTG+TGG | + | chr2_4:60276662-60276681 | Msa0339220:CDS | 30.0% | |
| AAGCAACATAGTTAGACTTA+TGG | + | chr2_4:60276784-60276803 | Msa0339220:CDS | 30.0% | |
| GTTCAAAGATAAACAAGTTG+AGG | + | chr2_4:60276864-60276883 | Msa0339220:CDS | 30.0% | |
| ! | TCACTTTCATTTTACCTTGA+TGG | - | chr2_4:60277118-60277137 | None:intergenic | 30.0% |
| AAATGAAAGTGAAAAAGGGA+AGG | + | chr2_4:60277126-60277145 | Msa0339220:three_prime_UTR | 30.0% | |
| AATTAAGGCAAAGAAGTTCA+AGG | + | chr2_4:60277182-60277201 | Msa0339220:three_prime_UTR | 30.0% | |
| AAAAGGGGAAGTTTATGTTA+TGG | + | chr2_4:60277380-60277399 | Msa0339220:three_prime_UTR | 30.0% | |
| AAAGGGGAAGTTTATGTTAT+GGG | + | chr2_4:60277381-60277400 | Msa0339220:three_prime_UTR | 30.0% | |
| CAATTTGAAGGTTACCTTGT+TGG | - | chr2_4:60274619-60274638 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGTGGAAAAGAGA+AGG | - | chr2_4:60274665-60274684 | None:intergenic | 35.0% |
| !!! | GATCAAAGAGAGTTTTTTGG+TGG | - | chr2_4:60274676-60274695 | None:intergenic | 35.0% |
| AAAAAGAATTCACCTCGATC+TGG | - | chr2_4:60274733-60274752 | None:intergenic | 35.0% | |
| ! | ATTCTGTCAAGGCTTTTACA+TGG | + | chr2_4:60274839-60274858 | Msa0339220:CDS | 35.0% |
| ! | CGAAAAAAACAGGTAATGGT+TGG | + | chr2_4:60274887-60274906 | Msa0339220:intron | 35.0% |
| !!! | CATTGTGTTTTTTGGCATGT+TGG | + | chr2_4:60274927-60274946 | Msa0339220:intron | 35.0% |
| ! | TTTTCAGACTCCTCTTATGT+TGG | + | chr2_4:60274996-60275015 | Msa0339220:intron | 35.0% |
| ! | AAGCTGGTGCTAATGTAATT+TGG | + | chr2_4:60275061-60275080 | Msa0339220:intron | 35.0% |
| ATCAAAGTCAAAGTCAATCC+AGG | - | chr2_4:60275325-60275344 | None:intergenic | 35.0% | |
| TGTGAATGTTAGAGATGGAA+AGG | + | chr2_4:60275404-60275423 | Msa0339220:CDS | 35.0% | |
| GTGAATGTTAGAGATGGAAA+GGG | + | chr2_4:60275405-60275424 | Msa0339220:CDS | 35.0% | |
| ! | TTGAAATTTTGCAGCTATCC+TGG | + | chr2_4:60275615-60275634 | Msa0339220:intron | 35.0% |
| !! | GTGGCTTATTGGTTTGTATA+TGG | + | chr2_4:60275794-60275813 | Msa0339220:intron | 35.0% |
| ! | CCCTAGATTTTCATGTTGTT+TGG | + | chr2_4:60276051-60276070 | Msa0339220:intron | 35.0% |
| TGTTTCATAGCAACCATGTA+TGG | - | chr2_4:60276097-60276116 | None:intergenic | 35.0% | |
| AGTTCACTGATGAATTTCAG+TGG | - | chr2_4:60276184-60276203 | None:intergenic | 35.0% | |
| ! | CATCAAAGCTTGTTCTAACA+AGG | - | chr2_4:60276224-60276243 | None:intergenic | 35.0% |
| ! | CTTGTTAGAACAAGCTTTGA+TGG | + | chr2_4:60276222-60276241 | Msa0339220:CDS | 35.0% |
| GGGAGAAAGATATATTGAAG+GGG | + | chr2_4:60276260-60276279 | Msa0339220:CDS | 35.0% | |
| TCTACACAATCTGATTGTGA+TGG | - | chr2_4:60276307-60276326 | None:intergenic | 35.0% | |
| CAAAAGGAGTCAAATTACCT+CGG | - | chr2_4:60276341-60276360 | None:intergenic | 35.0% | |
| GGCTGAGAGATTTGATTATT+TGG | + | chr2_4:60276517-60276536 | Msa0339220:intron | 35.0% | |
| GAGTTATAGAAGTAGTTGTC+GGG | - | chr2_4:60276742-60276761 | None:intergenic | 35.0% | |
| GGAGTTATAGAAGTAGTTGT+CGG | - | chr2_4:60276743-60276762 | None:intergenic | 35.0% | |
| ! | ACTATGTTGCTTCGACAAAA+TGG | - | chr2_4:60276776-60276795 | None:intergenic | 35.0% |
| TGATAAAGAATGATGCACAG+TGG | + | chr2_4:60276997-60277016 | Msa0339220:exon | 35.0% | |
| !! | ATTCCATATTGGTTTAGGCA+CGG | + | chr2_4:60277073-60277092 | Msa0339220:three_prime_UTR | 35.0% |
| GACATATCTCCAACAACATT+TGG | - | chr2_4:60277214-60277233 | None:intergenic | 35.0% | |
| ATGTTGTTGGAGATATGTCA+AGG | + | chr2_4:60277215-60277234 | Msa0339220:three_prime_UTR | 35.0% | |
| ATATCACTCACCAAACTAGG+TGG | + | chr2_4:60274478-60274497 | Msa0339220:five_prime_UTR | 40.0% | |
| ! | AACTTCACCTCTGGTTTGAA+TGG | - | chr2_4:60274509-60274528 | None:intergenic | 40.0% |
| TGCAGAGGTAACAATGATCA+TGG | + | chr2_4:60274578-60274597 | Msa0339220:CDS | 40.0% | |
| TTAGCAGCAGCAATATGAAG+AGG | - | chr2_4:60274707-60274726 | None:intergenic | 40.0% | |
| CTTCATATTGCTGCTGCTAA+TGG | + | chr2_4:60274707-60274726 | Msa0339220:CDS | 40.0% | |
| AGCAGAAATGCCAGAGAATA+AGG | - | chr2_4:60274756-60274775 | None:intergenic | 40.0% | |
| TTCTGCTCAATCTAGTCATG+TGG | + | chr2_4:60275253-60275272 | Msa0339220:CDS | 40.0% | |
| ! | TTGGTTGTAGGGGATTTGTT+CGG | + | chr2_4:60275379-60275398 | Msa0339220:intron | 40.0% |
| CGGTTTGTGAATGTTAGAGA+TGG | + | chr2_4:60275399-60275418 | Msa0339220:CDS | 40.0% | |
| ATTTGGCATCTCGACAAAGA+CGG | + | chr2_4:60275442-60275461 | Msa0339220:CDS | 40.0% | |
| AGATCAGTACCCATATCTAC+CGG | - | chr2_4:60275520-60275539 | None:intergenic | 40.0% | |
| TGATTGCATCCGTGAATTGT+TGG | + | chr2_4:60275677-60275696 | Msa0339220:CDS | 40.0% | |
| GTATTCAGCGTGATTCATCT+GGG | + | chr2_4:60275715-60275734 | Msa0339220:CDS | 40.0% | |
| GTTGCTATGAAACACAGACA+CGG | + | chr2_4:60276103-60276122 | Msa0339220:CDS | 40.0% | |
| AGCAGATGTAGGATTTAGCA+AGG | - | chr2_4:60276140-60276159 | None:intergenic | 40.0% | |
| CTGATGAATTTCAGTGGAGA+TGG | - | chr2_4:60276178-60276197 | None:intergenic | 40.0% | |
| ! | AGCTTGTTCTAACAAGGCTT+TGG | - | chr2_4:60276218-60276237 | None:intergenic | 40.0% |
| ! | TGATGGATGCAAACAGAGAA+AGG | + | chr2_4:60276239-60276258 | Msa0339220:CDS | 40.0% |
| GATGGATGCAAACAGAGAAA+GGG | + | chr2_4:60276240-60276259 | Msa0339220:CDS | 40.0% | |
| ! | CAATCTGATTGTGATGGAGA+CGG | - | chr2_4:60276301-60276320 | None:intergenic | 40.0% |
| TGTAGATGACAATATCTCCG+AGG | + | chr2_4:60276321-60276340 | Msa0339220:CDS | 40.0% | |
| ATGTGCATTGTGCACACATT+TGG | - | chr2_4:60276691-60276710 | None:intergenic | 40.0% | |
| !! | CGGTTTGTTGTAGCAACAAA+GGG | - | chr2_4:60276717-60276736 | None:intergenic | 40.0% |
| !! | TCGGTTTGTTGTAGCAACAA+AGG | - | chr2_4:60276718-60276737 | None:intergenic | 40.0% |
| ATAGAAGTAGTTGTCGGGTT+CGG | - | chr2_4:60276737-60276756 | None:intergenic | 40.0% | |
| CTTCGACAAAATGGACAAAC+TGG | - | chr2_4:60276767-60276786 | None:intergenic | 40.0% | |
| TACCGCTGTCGTTCAAATTT+CGG | - | chr2_4:60276895-60276914 | None:intergenic | 40.0% | |
| ! | GGATTATCTAGTGTGTCGTT+CGG | + | chr2_4:60276929-60276948 | Msa0339220:CDS | 40.0% |
| TTACCGTGCCTAAACCAATA+TGG | - | chr2_4:60277079-60277098 | None:intergenic | 40.0% | |
| AAGTGTGTGCTTAACCATCA+AGG | + | chr2_4:60277101-60277120 | Msa0339220:three_prime_UTR | 40.0% | |
| AAGGCAAAGAAGTTCAAGGT+AGG | + | chr2_4:60277186-60277205 | Msa0339220:three_prime_UTR | 40.0% | |
| AGGTAGGTACCAAATGTTGT+TGG | + | chr2_4:60277202-60277221 | Msa0339220:three_prime_UTR | 40.0% | |
| AATGGATGAGCCACCTAGTT+TGG | - | chr2_4:60274491-60274510 | None:intergenic | 45.0% | |
| AAGTGGTTGAACTTCACCTC+TGG | - | chr2_4:60274518-60274537 | None:intergenic | 45.0% | |
| AAGACCTTGACCCATGTTGT+CGG | - | chr2_4:60274555-60274574 | None:intergenic | 45.0% | |
| CTCTTCATTGCTGTCCAACA+AGG | + | chr2_4:60274602-60274621 | Msa0339220:CDS | 45.0% | |
| TGCATTGCAGCCAACATAAG+AGG | - | chr2_4:60275009-60275028 | None:intergenic | 45.0% | |
| ! | CTTATGTTGGCTGCAATGCA+TGG | + | chr2_4:60275009-60275028 | Msa0339220:CDS | 45.0% |
| TGTCGAGATGCCAAATGCAA+TGG | - | chr2_4:60275438-60275457 | None:intergenic | 45.0% | |
| CATCCGTGAATTGTTGGCAT+GGG | + | chr2_4:60275683-60275702 | Msa0339220:CDS | 45.0% | |
| ATCCGTGAATTGTTGGCATG+GGG | + | chr2_4:60275684-60275703 | Msa0339220:CDS | 45.0% | |
| CGTATTCAGCGTGATTCATC+TGG | + | chr2_4:60275714-60275733 | Msa0339220:CDS | 45.0% | |
| !! | GTTGTTTGGTGCGTTTATGC+AGG | + | chr2_4:60276065-60276084 | Msa0339220:intron | 45.0% |
| ATGCAGGCGTATACCATACA+TGG | + | chr2_4:60276081-60276100 | Msa0339220:intron | 45.0% | |
| ! | TCTAACAAGGCTTTGGCTTC+CGG | - | chr2_4:60276211-60276230 | None:intergenic | 45.0% |
| CGACAAAATGGACAAACTGG+TGG | - | chr2_4:60276764-60276783 | None:intergenic | 45.0% | |
| CTCCGAAATTTGAACGACAG+CGG | + | chr2_4:60276890-60276909 | Msa0339220:CDS | 45.0% | |
| ! | TAGTGTGTCGTTCGGAAAGT+TGG | + | chr2_4:60276937-60276956 | Msa0339220:CDS | 45.0% |
| ! | AGTGTGTCGTTCGGAAAGTT+GGG | + | chr2_4:60276938-60276957 | Msa0339220:CDS | 45.0% |
| GGCTCATCCATTCAAACCAG+AGG | + | chr2_4:60274499-60274518 | Msa0339220:five_prime_UTR | 50.0% | |
| AGACCTTGACCCATGTTGTC+GGG | - | chr2_4:60274554-60274573 | None:intergenic | 50.0% | |
| GGTCAAGGTCTTAGTTGCAG+AGG | + | chr2_4:60274563-60274582 | Msa0339220:CDS | 50.0% | |
| ! | TGTTGGCTGCAATGCATGGA+AGG | + | chr2_4:60275013-60275032 | Msa0339220:CDS | 50.0% |
| GCATGGAAGGATTGCATGTG+TGG | + | chr2_4:60275026-60275045 | Msa0339220:CDS | 50.0% | |
| GTGGAGAAGCTACTTGAAGC+TGG | + | chr2_4:60275045-60275064 | Msa0339220:CDS | 50.0% | |
| CTAGTCATGTGGCTGCTTCT+TGG | + | chr2_4:60275264-60275283 | Msa0339220:CDS | 50.0% | |
| ! | GCTCTTGTTTGTGCTTCGAC+CGG | + | chr2_4:60275498-60275517 | Msa0339220:CDS | 50.0% |
| TGTGCTTCGACCGGTAGATA+TGG | + | chr2_4:60275507-60275526 | Msa0339220:CDS | 50.0% | |
| GTGCTTCGACCGGTAGATAT+GGG | + | chr2_4:60275508-60275527 | Msa0339220:CDS | 50.0% | |
| CCTCTAGCAGCAAGATGAAG+GGG | - | chr2_4:60275648-60275667 | None:intergenic | 50.0% | |
| CCCTCTAGCAGCAAGATGAA+GGG | - | chr2_4:60275649-60275668 | None:intergenic | 50.0% | |
| CCCTTCATCTTGCTGCTAGA+GGG | + | chr2_4:60275646-60275665 | Msa0339220:CDS | 50.0% | |
| CCTTCATCTTGCTGCTAGAG+GGG | + | chr2_4:60275647-60275666 | Msa0339220:CDS | 50.0% | |
| CTTCATCTTGCTGCTAGAGG+GGG | + | chr2_4:60275648-60275667 | Msa0339220:CDS | 50.0% | |
| TTCATCTTGCTGCTAGAGGG+GGG | + | chr2_4:60275649-60275668 | Msa0339220:CDS | 50.0% | |
| GCATCCGTGAATTGTTGGCA+TGG | + | chr2_4:60275682-60275701 | Msa0339220:CDS | 50.0% | |
| CAGCGTGATTCATCTGGGTA+TGG | + | chr2_4:60275720-60275739 | Msa0339220:intron | 50.0% | |
| ACAAGAGGCTCAGCAGATGT+AGG | - | chr2_4:60276151-60276170 | None:intergenic | 50.0% | |
| CATCTGCTGAGCCTCTTGTT+TGG | + | chr2_4:60276152-60276171 | Msa0339220:CDS | 50.0% | |
| AGTGGAGATGGCCAAACAAG+AGG | - | chr2_4:60276166-60276185 | None:intergenic | 50.0% | |
| TATGTGTGCACGCGGACAAA+AGG | - | chr2_4:60276357-60276376 | None:intergenic | 50.0% | |
| TTGGTGTGTATGTGTGCACG+CGG | - | chr2_4:60276365-60276384 | None:intergenic | 50.0% | |
| ! | ATGCTGCATCTGCTTTGAGC+AGG | + | chr2_4:60276634-60276653 | Msa0339220:CDS | 50.0% |
| AGCGGTAGTAGCAGCTTCAA+AGG | + | chr2_4:60276908-60276927 | Msa0339220:CDS | 50.0% | |
| CAGCAACCCTTCCTGAACTT+CGG | - | chr2_4:60276967-60276986 | None:intergenic | 50.0% | |
| ATGATGCACAGTGGCTAGTG+TGG | + | chr2_4:60277006-60277025 | Msa0339220:exon | 50.0% | |
| GACCTTGACCCATGTTGTCG+GGG | - | chr2_4:60274553-60274572 | None:intergenic | 55.0% | |
| TGCTGCTAATGGCCAGATCG+AGG | + | chr2_4:60274718-60274737 | Msa0339220:CDS | 55.0% | |
| !! | AGATGAAGGGGAGTGCTTCC+AGG | - | chr2_4:60275636-60275655 | None:intergenic | 55.0% |
| CCCCTTCATCTTGCTGCTAG+AGG | + | chr2_4:60275645-60275664 | Msa0339220:CDS | 55.0% | |
| CCCCTCTAGCAGCAAGATGA+AGG | - | chr2_4:60275650-60275669 | None:intergenic | 55.0% | |
| CGCCCCATGCCAACAATTCA+CGG | - | chr2_4:60275689-60275708 | None:intergenic | 55.0% | |
| AAGTTGGGCGTCCGAAGTTC+AGG | + | chr2_4:60276953-60276972 | Msa0339220:CDS | 55.0% | |
| CAGGAAGGGTTGCTGCTGAA+TGG | + | chr2_4:60276972-60276991 | Msa0339220:CDS | 55.0% | |
| CGGGGAGAGGGGAAGTTAAG+TGG | - | chr2_4:60274535-60274554 | None:intergenic | 60.0% | |
| TTCCCCTCTCCCCGACAACA+TGG | + | chr2_4:60274541-60274560 | Msa0339220:exon | 60.0% | |
| TCCCCTCTCCCCGACAACAT+GGG | + | chr2_4:60274542-60274561 | Msa0339220:exon | 60.0% | |
| ACCCATGTTGTCGGGGAGAG+GGG | - | chr2_4:60274546-60274565 | None:intergenic | 60.0% | |
| GACCCATGTTGTCGGGGAGA+GGG | - | chr2_4:60274547-60274566 | None:intergenic | 60.0% | |
| TGACCCATGTTGTCGGGGAG+AGG | - | chr2_4:60274548-60274567 | None:intergenic | 60.0% | |
| CTCCCCGACAACATGGGTCA+AGG | + | chr2_4:60274548-60274567 | Msa0339220:exon | 60.0% | |
| GGGTGCGACGCCATTGCATT+TGG | + | chr2_4:60275425-60275444 | Msa0339220:CDS | 60.0% | |
| TGGGCGTCCGAAGTTCAGGA+AGG | + | chr2_4:60276957-60276976 | Msa0339220:CDS | 60.0% | |
| GGGCGTCCGAAGTTCAGGAA+GGG | + | chr2_4:60276958-60276977 | Msa0339220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60274390 | 60277496 | 60274390 | ID=Msa0339220;Name=Msa0339220 |
| chr2_4 | mRNA | 60274390 | 60277496 | 60274390 | ID=Msa0339220-mRNA-1;Parent=Msa0339220;Name=Msa0339220-mRNA-1;_AED=0.11;_eAED=0.11;_QI=170|1|1|1|1|1|8|487|443 |
| chr2_4 | exon | 60274390 | 60274739 | 60274390 | ID=Msa0339220-mRNA-1:exon:18706;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60274839 | 60274898 | 60274839 | ID=Msa0339220-mRNA-1:exon:18707;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60275003 | 60275074 | 60275003 | ID=Msa0339220-mRNA-1:exon:18708;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60275164 | 60275285 | 60275164 | ID=Msa0339220-mRNA-1:exon:18709;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60275389 | 60275529 | 60275389 | ID=Msa0339220-mRNA-1:exon:18710;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60275629 | 60275736 | 60275629 | ID=Msa0339220-mRNA-1:exon:18711;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60276087 | 60276342 | 60276087 | ID=Msa0339220-mRNA-1:exon:18712;Parent=Msa0339220-mRNA-1 |
| chr2_4 | exon | 60276617 | 60277496 | 60276617 | ID=Msa0339220-mRNA-1:exon:18713;Parent=Msa0339220-mRNA-1 |
| chr2_4 | five_prime_UTR | 60274390 | 60274559 | 60274390 | ID=Msa0339220-mRNA-1:five_prime_utr;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60274560 | 60274739 | 60274560 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60274839 | 60274898 | 60274839 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60275003 | 60275074 | 60275003 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60275164 | 60275285 | 60275164 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60275389 | 60275529 | 60275389 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60275629 | 60275736 | 60275629 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60276087 | 60276342 | 60276087 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | CDS | 60276617 | 60277009 | 60276617 | ID=Msa0339220-mRNA-1:cds;Parent=Msa0339220-mRNA-1 |
| chr2_4 | three_prime_UTR | 60277010 | 60277496 | 60277010 | ID=Msa0339220-mRNA-1:three_prime_utr;Parent=Msa0339220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
