Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223480 | AES67678.1 | 96.559 | 494 | 17 | 0 | 1 | 494 | 13 | 506 | 0.0 | 976 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223480 | sp|Q70E96|AL3F1_ARATH | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223480 | G7IUB3 | 96.559 | 494 | 17 | 0 | 1 | 494 | 13 | 506 | 0.0 | 976 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223480 | Msa0264600 | 0.859517 | 3.917402e-63 | -8.615850e-47 |
| Msa0223480 | Msa0295010 | 0.968384 | 1.335019e-128 | -8.615850e-47 |
| Msa0223480 | Msa0339990 | 0.855740 | 5.152126e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223480 | MtrunA17_Chr2g0328781 | 96.559 | 494 | 17 | 0 | 1 | 494 | 13 | 506 | 0.0 | 976 |
| Msa0223480 | MtrunA17_Chr4g0032441 | 71.642 | 469 | 132 | 1 | 5 | 472 | 1 | 469 | 0.0 | 668 |
| Msa0223480 | MtrunA17_Chr8g0372381 | 56.250 | 480 | 203 | 2 | 8 | 483 | 9 | 485 | 0.0 | 572 |
| Msa0223480 | MtrunA17_Chr8g0384741 | 47.447 | 470 | 244 | 1 | 12 | 481 | 73 | 539 | 3.15e-156 | 455 |
| Msa0223480 | MtrunA17_Chr3g0124811 | 45.929 | 479 | 256 | 1 | 3 | 481 | 13 | 488 | 8.31e-156 | 452 |
| Msa0223480 | MtrunA17_Chr1g0159811 | 47.470 | 415 | 215 | 1 | 3 | 417 | 11 | 422 | 2.45e-133 | 395 |
| Msa0223480 | MtrunA17_Chr3g0129271 | 56.545 | 191 | 83 | 0 | 175 | 365 | 31 | 221 | 1.89e-70 | 225 |
| Msa0223480 | MtrunA17_Chr2g0294411 | 26.770 | 452 | 298 | 11 | 23 | 453 | 96 | 535 | 1.01e-39 | 151 |
| Msa0223480 | MtrunA17_Chr2g0310091 | 29.379 | 354 | 232 | 10 | 104 | 448 | 193 | 537 | 8.58e-39 | 148 |
| Msa0223480 | MtrunA17_Chr4g0009161 | 64.356 | 101 | 35 | 1 | 175 | 274 | 116 | 216 | 2.35e-34 | 129 |
| Msa0223480 | MtrunA17_Chr3g0118081 | 27.010 | 485 | 292 | 13 | 1 | 454 | 77 | 530 | 2.34e-32 | 129 |
| Msa0223480 | MtrunA17_Chr3g0118121 | 27.311 | 476 | 302 | 15 | 1 | 454 | 47 | 500 | 6.84e-32 | 128 |
| Msa0223480 | MtrunA17_Chr4g0059521 | 28.477 | 453 | 291 | 14 | 23 | 454 | 60 | 500 | 9.49e-32 | 127 |
| Msa0223480 | MtrunA17_Chr6g0485301 | 29.425 | 435 | 263 | 17 | 39 | 456 | 94 | 501 | 2.32e-28 | 117 |
| Msa0223480 | MtrunA17_Chr4g0059221 | 27.212 | 452 | 302 | 13 | 2 | 440 | 97 | 534 | 5.71e-28 | 117 |
| Msa0223480 | MtrunA17_Chr8g0365221 | 27.455 | 448 | 298 | 13 | 6 | 440 | 98 | 531 | 9.00e-27 | 113 |
| Msa0223480 | MtrunA17_Chr8g0390651 | 27.273 | 484 | 286 | 18 | 2 | 456 | 56 | 502 | 1.88e-26 | 112 |
| Msa0223480 | MtrunA17_Chr8g0390631 | 27.815 | 453 | 265 | 20 | 30 | 456 | 77 | 493 | 4.48e-26 | 111 |
| Msa0223480 | MtrunA17_Chr4g0074171 | 26.757 | 441 | 287 | 14 | 2 | 423 | 44 | 467 | 5.32e-25 | 107 |
| Msa0223480 | MtrunA17_Chr6g0485311 | 27.356 | 435 | 257 | 16 | 39 | 445 | 92 | 495 | 8.70e-25 | 107 |
| Msa0223480 | MtrunA17_Chr3g0117861 | 26.116 | 448 | 304 | 13 | 6 | 440 | 99 | 532 | 9.27e-25 | 107 |
| Msa0223480 | MtrunA17_Chr1g0149961 | 28.660 | 321 | 213 | 9 | 108 | 423 | 158 | 467 | 1.25e-23 | 103 |
| Msa0223480 | MtrunA17_Chr2g0300801 | 26.346 | 353 | 239 | 10 | 105 | 447 | 152 | 493 | 2.34e-17 | 84.7 |
| Msa0223480 | MtrunA17_Chr2g0279751 | 26.452 | 310 | 206 | 10 | 105 | 401 | 147 | 447 | 2.22e-16 | 81.6 |
| Msa0223480 | MtrunA17_Chr4g0049641 | 26.129 | 310 | 207 | 10 | 105 | 401 | 174 | 474 | 5.42e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223480 | AT4G36250.1 | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 561 |
| Msa0223480 | AT1G44170.1 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 1.53e-160 | 464 |
| Msa0223480 | AT1G44170.2 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 1.53e-160 | 464 |
| Msa0223480 | AT4G34240.4 | 49.469 | 471 | 235 | 1 | 12 | 482 | 64 | 531 | 6.15e-156 | 454 |
| Msa0223480 | AT4G34240.1 | 49.469 | 471 | 235 | 1 | 12 | 482 | 79 | 546 | 1.07e-155 | 454 |
| Msa0223480 | AT1G44170.3 | 49.761 | 418 | 207 | 1 | 65 | 482 | 6 | 420 | 4.74e-147 | 427 |
| Msa0223480 | AT4G34240.3 | 51.478 | 406 | 194 | 1 | 77 | 482 | 2 | 404 | 7.24e-140 | 409 |
| Msa0223480 | AT4G34240.2 | 49.206 | 315 | 157 | 1 | 12 | 326 | 79 | 390 | 4.22e-95 | 293 |
| Msa0223480 | AT3G66658.2 | 27.557 | 479 | 310 | 12 | 23 | 471 | 96 | 567 | 4.25e-46 | 169 |
| Msa0223480 | AT3G66658.1 | 27.640 | 445 | 294 | 10 | 23 | 446 | 96 | 533 | 2.13e-45 | 167 |
| Msa0223480 | AT1G79440.1 | 30.460 | 348 | 222 | 9 | 104 | 441 | 184 | 521 | 5.40e-39 | 149 |
| Msa0223480 | AT1G74920.2 | 29.909 | 438 | 283 | 14 | 30 | 454 | 69 | 495 | 3.22e-35 | 137 |
| Msa0223480 | AT1G74920.1 | 29.909 | 438 | 283 | 14 | 30 | 454 | 74 | 500 | 3.32e-35 | 137 |
| Msa0223480 | AT3G48170.1 | 26.526 | 475 | 304 | 16 | 6 | 454 | 45 | 500 | 6.40e-30 | 122 |
| Msa0223480 | AT1G23800.1 | 27.212 | 452 | 302 | 14 | 2 | 440 | 87 | 524 | 6.78e-28 | 117 |
| Msa0223480 | AT3G48000.1 | 27.212 | 452 | 302 | 12 | 2 | 440 | 91 | 528 | 3.55e-26 | 112 |
| Msa0223480 | AT3G24503.1 | 27.506 | 429 | 273 | 18 | 30 | 440 | 83 | 491 | 2.73e-24 | 106 |
| Msa0223480 | AT2G24270.2 | 29.283 | 321 | 211 | 9 | 108 | 423 | 198 | 507 | 6.37e-24 | 105 |
| Msa0223480 | AT2G24270.3 | 29.283 | 321 | 211 | 9 | 108 | 423 | 158 | 467 | 1.31e-23 | 104 |
| Msa0223480 | AT2G24270.1 | 29.283 | 321 | 211 | 9 | 108 | 423 | 158 | 467 | 1.31e-23 | 104 |
| Msa0223480 | AT2G24270.4 | 29.283 | 321 | 211 | 9 | 108 | 423 | 158 | 467 | 1.55e-23 | 103 |
| Msa0223480 | AT1G54100.2 | 27.143 | 350 | 234 | 10 | 108 | 447 | 154 | 492 | 4.52e-17 | 84.3 |
| Msa0223480 | AT1G54100.1 | 27.143 | 350 | 234 | 10 | 108 | 447 | 154 | 492 | 4.52e-17 | 84.3 |
| Msa0223480 | AT1G23800.2 | 27.044 | 318 | 208 | 11 | 2 | 307 | 87 | 392 | 2.48e-13 | 72.0 |
Find 114 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTATGTAGATTTA+TGG | 0.118638 | 2_1:-73026195 | Msa0223480:intron |
| CACTGTTCTACCAAATTATT+TGG | 0.132543 | 2_1:-73028539 | Msa0223480:CDS |
| TACTTATCTTACAGTGATTA+TGG | 0.138309 | 2_1:+73026100 | None:intergenic |
| TATTGTTATTCTTTATTTCT+AGG | 0.144314 | 2_1:-73024972 | Msa0223480:three_prime_UTR |
| CACTTGAAAGTAGTGCTATT+TGG | 0.163353 | 2_1:+73028831 | None:intergenic |
| TTCTCCTAGCCACAGCTTTA+TGG | 0.164740 | 2_1:+73025203 | None:intergenic |
| AAGGCCCTCAAGAAGGATTT+AGG | 0.176467 | 2_1:-73029225 | Msa0223480:CDS |
| AGGAGTTGCTCTCCAATTTC+TGG | 0.180506 | 2_1:+73028484 | None:intergenic |
| CAATAATCAGCTATCCTTAT+TGG | 0.190072 | 2_1:+73024990 | None:intergenic |
| CCTTTATTGTCCAAATAATT+TGG | 0.194174 | 2_1:+73028529 | None:intergenic |
| GCAATGCTGTTGGATTCTTT+TGG | 0.215212 | 2_1:+73027471 | None:intergenic |
| TTGATTCACTTTCAACTTCT+TGG | 0.229573 | 2_1:-73028232 | Msa0223480:CDS |
| CCAAATTATTTGGACAATAA+AGG | 0.258186 | 2_1:-73028529 | Msa0223480:CDS |
| ACTTGAAAGTAGTGCTATTT+GGG | 0.262171 | 2_1:+73028832 | None:intergenic |
| TGGAGAGAATCACAACTAAA+AGG | 0.262228 | 2_1:-73029288 | Msa0223480:CDS |
| TATGGAACCAACAATATTAC+TGG | 0.285040 | 2_1:-73026177 | Msa0223480:CDS |
| GCATAAATTGCTAGAGGTTT+AGG | 0.288414 | 2_1:+73025915 | None:intergenic |
| TTTACAACTATCATCCAATA+AGG | 0.295369 | 2_1:-73025004 | Msa0223480:three_prime_UTR |
| GATGGCTGTGAAACGAATTT+TGG | 0.298929 | 2_1:-73027718 | Msa0223480:CDS |
| GTGTCCTTGGAGCCATTAAT+TGG | 0.298989 | 2_1:-73028634 | Msa0223480:CDS |
| ATTGAAGGTGGACCAGAAAT+TGG | 0.299642 | 2_1:-73028496 | Msa0223480:CDS |
| GTTAAAGAAATCCATTGATT+TGG | 0.305202 | 2_1:-73029055 | Msa0223480:CDS |
| AAGAACATGAGAAAGTATTA+TGG | 0.305368 | 2_1:-73029336 | Msa0223480:CDS |
| GCAGCTATGGCTCCAATTAA+TGG | 0.306017 | 2_1:+73028622 | None:intergenic |
| ACTCCTATAACTCTGGAGTT+AGG | 0.328012 | 2_1:-73028275 | Msa0223480:CDS |
| AAAAGCACACATTAGAATCT+TGG | 0.333702 | 2_1:+73024930 | None:intergenic |
| GAGGAGACTCTTGATTCTAT+TGG | 0.336102 | 2_1:+73027425 | None:intergenic |
| TGTAAGCTTCTTCAAGTAGT+TGG | 0.339552 | 2_1:+73025128 | None:intergenic |
| TGATTCACTTTCAACTTCTT+GGG | 0.343615 | 2_1:-73028231 | Msa0223480:CDS |
| GGAGTTCTCAGTGGAAGCTT+TGG | 0.372513 | 2_1:-73029370 | Msa0223480:CDS |
| CTCCTATAACTCTGGAGTTA+GGG | 0.372962 | 2_1:-73028274 | Msa0223480:CDS |
| GGTGCATCAGTCTCTAATAT+TGG | 0.374772 | 2_1:-73029399 | None:intergenic |
| TTCAAAACGTTCATTATATG+AGG | 0.382788 | 2_1:-73025059 | Msa0223480:CDS |
| ACCACCGATTCTTTGACATT+AGG | 0.390930 | 2_1:+73027396 | None:intergenic |
| ACTTATCTTACAGTGATTAT+GGG | 0.400023 | 2_1:+73026101 | None:intergenic |
| AGGCCCTCAAGAAGGATTTA+GGG | 0.400687 | 2_1:-73029224 | Msa0223480:CDS |
| GGACTTTATTGCCAAATCAA+TGG | 0.403173 | 2_1:+73029044 | None:intergenic |
| AGAACATGAGAAAGTATTAT+GGG | 0.405722 | 2_1:-73029335 | Msa0223480:CDS |
| GGAGTTGGTGAATGTGGATT+TGG | 0.413532 | 2_1:-73025265 | Msa0223480:CDS |
| ACCATCCCATTTGGAGGAGT+TGG | 0.443845 | 2_1:-73025280 | Msa0223480:CDS |
| ATAGCGGATACCATCCCATT+TGG | 0.449228 | 2_1:-73025289 | Msa0223480:CDS |
| AACAATCCTTGCAATGCTGT+TGG | 0.454731 | 2_1:+73027461 | None:intergenic |
| ATTTAATGATGCAATTCTAC+AGG | 0.457393 | 2_1:-73025829 | Msa0223480:intron |
| GAAATTGTTGCTGAGCCTCT+TGG | 0.457989 | 2_1:-73028806 | Msa0223480:CDS |
| TTTGGTTCAGGTTTCCTCCA+TGG | 0.459950 | 2_1:-73025165 | Msa0223480:CDS |
| CTTCCCTAAATCCTTCTTGA+GGG | 0.460635 | 2_1:+73029221 | None:intergenic |
| CATTCACCAACTCCTCCAAA+TGG | 0.461138 | 2_1:+73025274 | None:intergenic |
| ATCATGACAGAAGAAATCTT+TGG | 0.467373 | 2_1:-73026134 | Msa0223480:CDS |
| CAAAACACTGCAGAGAAGAT+TGG | 0.468898 | 2_1:-73025880 | Msa0223480:CDS |
| CTAGAAGAGAAGAAGAAGTA+AGG | 0.473115 | 2_1:+73028563 | None:intergenic |
| GCATCTCACTCCTATAACTC+TGG | 0.477082 | 2_1:-73028282 | Msa0223480:CDS |
| TTGGTATCTGAAACATCATC+CGG | 0.480961 | 2_1:-73025861 | Msa0223480:CDS |
| TGGAACTTGTTAAGATTCCA+TGG | 0.484735 | 2_1:+73025148 | None:intergenic |
| GCTTACAATTTAAACTACAT+TGG | 0.487149 | 2_1:-73025112 | Msa0223480:CDS |
| TAGGTGGAGTTAATGAAGGA+AGG | 0.488749 | 2_1:-73027519 | Msa0223480:CDS |
| GCAAAGTATGGGGCTTGTGC+AGG | 0.494839 | 2_1:-73027693 | Msa0223480:CDS |
| AAAGGCATTAAGATCATTGA+AGG | 0.497453 | 2_1:-73028511 | Msa0223480:CDS |
| TGCAACATTTCCAGCAGCTA+TGG | 0.497942 | 2_1:+73028609 | None:intergenic |
| AATTCCATGATGAGATTATG+AGG | 0.500503 | 2_1:+73028777 | None:intergenic |
| AAAATGGATGGCTGGTAAAG+AGG | 0.500707 | 2_1:-73029016 | Msa0223480:intron |
| TCTTTAGGTGGAGTTAATGA+AGG | 0.502645 | 2_1:-73027523 | Msa0223480:intron |
| GGAGAGAATCACAACTAAAA+GGG | 0.505316 | 2_1:-73029287 | Msa0223480:CDS |
| GCTTCCCTAAATCCTTCTTG+AGG | 0.505953 | 2_1:+73029220 | None:intergenic |
| AGGTGGAGTTAATGAAGGAA+GGG | 0.506548 | 2_1:-73027518 | Msa0223480:CDS |
| TGTGGATTTGGCAAGTATCA+TGG | 0.509305 | 2_1:-73025253 | Msa0223480:CDS |
| ATGAGAAAGTATTATGGGAG+TGG | 0.517718 | 2_1:-73029330 | Msa0223480:CDS |
| TGAACCTAATGTCAAAGAAT+CGG | 0.526059 | 2_1:-73027400 | Msa0223480:CDS |
| GAAAGTGAATCAACCAGTGC+TGG | 0.531970 | 2_1:+73028242 | None:intergenic |
| AAATGAGGAAGAGATCTTGA+AGG | 0.532562 | 2_1:-73029244 | Msa0223480:CDS |
| GATTGTTATGTCTGCAGCAG+TGG | 0.533250 | 2_1:-73028306 | Msa0223480:CDS |
| ATTCACCAACTCCTCCAAAT+GGG | 0.535804 | 2_1:+73025275 | None:intergenic |
| TTAATTGGAGCCATAGCTGC+TGG | 0.536986 | 2_1:-73028619 | Msa0223480:CDS |
| GTGGATTTGGCAAGTATCAT+GGG | 0.538798 | 2_1:-73025252 | Msa0223480:CDS |
| ATCATTAAATACAATGCTCC+CGG | 0.543496 | 2_1:+73025842 | None:intergenic |
| TTTGGAGGAGTTGGTGAATG+TGG | 0.544032 | 2_1:-73025271 | Msa0223480:CDS |
| TCCTATAACTCTGGAGTTAG+GGG | 0.551937 | 2_1:-73028273 | Msa0223480:CDS |
| TAACTTTGTCAAAGAAAATG+AGG | 0.553225 | 2_1:-73029259 | Msa0223480:CDS |
| GCGGATACCATCCCATTTGG+AGG | 0.558921 | 2_1:-73025286 | Msa0223480:CDS |
| TACAGTGATTATGGGAAGCA+CGG | 0.561570 | 2_1:+73026109 | None:intergenic |
| GTCATGATTGCTGATTCAAG+TGG | 0.562929 | 2_1:+73026149 | None:intergenic |
| GAAGTAAGGGCCAACTCTGA+AGG | 0.563236 | 2_1:+73028577 | None:intergenic |
| AGTCCTAAAACCTTCAGAGT+TGG | 0.563574 | 2_1:-73028587 | Msa0223480:CDS |
| TAGTCCTCATAATCTCATCA+TGG | 0.574613 | 2_1:-73028781 | Msa0223480:CDS |
| GGCTCCAATTAATGGCTCCA+AGG | 0.575676 | 2_1:+73028630 | None:intergenic |
| GTGAAAGCATAAATTGCTAG+AGG | 0.575786 | 2_1:+73025909 | None:intergenic |
| TAGAAGAGAAGAAGAAGTAA+GGG | 0.579415 | 2_1:+73028564 | None:intergenic |
| GATCTTGAAGGCCCTCAAGA+AGG | 0.580261 | 2_1:-73029232 | Msa0223480:CDS |
| ATATTAGGAAGTGCACGAGT+GGG | 0.582326 | 2_1:-73028332 | Msa0223480:intron |
| AGTCTCTAATATTGGTAACA+TGG | 0.591966 | 2_1:-73029391 | None:intergenic |
| TTTAGGGAAGCATCATGTTG+AGG | 0.599307 | 2_1:-73029208 | Msa0223480:CDS |
| TATATTAGGAAGTGCACGAG+TGG | 0.599974 | 2_1:-73028333 | Msa0223480:intron |
| AAAGAGCTTCAGTTCCACAT+TGG | 0.608853 | 2_1:-73027634 | Msa0223480:intron |
| GGCATTAAGATCATTGAAGG+TGG | 0.608940 | 2_1:-73028508 | Msa0223480:CDS |
| ACCAACTCCTCCAAATGGGA+TGG | 0.608963 | 2_1:+73025279 | None:intergenic |
| TCATGATTGCTGATTCAAGT+GGG | 0.615088 | 2_1:+73026150 | None:intergenic |
| ACAGTGATTATGGGAAGCAC+GGG | 0.618850 | 2_1:+73026110 | None:intergenic |
| ACCTAATGTCAAAGAATCGG+TGG | 0.620390 | 2_1:-73027397 | Msa0223480:CDS |
| AAGAATCCAACAGCATTGCA+AGG | 0.622783 | 2_1:-73027467 | Msa0223480:CDS |
| TAGGAAGTGCACGAGTGGGG+AGG | 0.625912 | 2_1:-73028328 | Msa0223480:CDS |
| GTCACCATAAAGCTGTGGCT+AGG | 0.633443 | 2_1:-73025207 | Msa0223480:CDS |
| TGGTATCTGAAACATCATCC+GGG | 0.645652 | 2_1:-73025860 | Msa0223480:CDS |
| TATTAGGAAGTGCACGAGTG+GGG | 0.646738 | 2_1:-73028331 | Msa0223480:intron |
| CAGGTGGAGAAGATTGAAGA+CGG | 0.650633 | 2_1:-73025960 | Msa0223480:CDS |
| TTCAACTTCTTGGGACAGAG+AGG | 0.650826 | 2_1:-73028222 | Msa0223480:intron |
| CAAATAATTTGGTAGAACAG+TGG | 0.655707 | 2_1:+73028540 | None:intergenic |
| ATGATTGCTGATTCAAGTGG+GGG | 0.665274 | 2_1:+73026152 | None:intergenic |
| CTTGAAAGTAGTGCTATTTG+GGG | 0.666143 | 2_1:+73028833 | None:intergenic |
| CCTATAACTCTGGAGTTAGG+GGG | 0.670137 | 2_1:-73028272 | Msa0223480:CDS |
| TGGTAACATGGAGTTCTCAG+TGG | 0.677211 | 2_1:-73029379 | Msa0223480:exon |
| CATGATTGCTGATTCAAGTG+GGG | 0.687119 | 2_1:+73026151 | None:intergenic |
| CTTTGACATTAGGTTCACTG+AGG | 0.691733 | 2_1:+73027406 | None:intergenic |
| ATTCAGTCACCATAAAGCTG+TGG | 0.694399 | 2_1:-73025212 | Msa0223480:CDS |
| ATTATGAGGACTAGACCAAG+AGG | 0.704548 | 2_1:+73028791 | None:intergenic |
| AACTTGTTAAGATTCCATGG+AGG | 0.758325 | 2_1:+73025151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAATAAACTAAATATAA+TGG | + | chr2_1:73025362-73025381 | None:intergenic | 10.0% |
| !!! | AGTTTTATTAATATAAACTA+AGG | - | chr2_1:73026368-73026387 | Msa0223480:intron | 10.0% |
| !!! | ATGTATATTTCTGTTTAATT+TGG | - | chr2_1:73025168-73025187 | Msa0223480:CDS | 15.0% |
| !! | GCAAATTATATATATACATA+TGG | + | chr2_1:73025208-73025227 | None:intergenic | 15.0% |
| !!! | TATGTATATATATAATTTGC+AGG | - | chr2_1:73025208-73025227 | Msa0223480:CDS | 15.0% |
| !!! | TTTAATTTCATGTAAAAGTA+TGG | + | chr2_1:73025400-73025419 | None:intergenic | 15.0% |
| !! | CCTATATTAATAAAACTTAA+TGG | + | chr2_1:73026228-73026247 | None:intergenic | 15.0% |
| !!! | CCATTAAGTTTTATTAATAT+AGG | - | chr2_1:73026225-73026244 | Msa0223480:intron | 15.0% |
| !! | ATTTAAATGATTGAATTAAC+CGG | - | chr2_1:73027120-73027139 | Msa0223480:intron | 15.0% |
| !! | ATTCCCAAATAAATATTATT+TGG | - | chr2_1:73027162-73027181 | Msa0223480:intron | 15.0% |
| !! | TGTCCAAATAATATTTATTT+GGG | + | chr2_1:73027168-73027187 | None:intergenic | 15.0% |
| !! | CAAAATCAAGAAAAAATTAA+AGG | + | chr2_1:73027264-73027283 | None:intergenic | 15.0% |
| !!! | ATAAGGTATTAAAAAAAACA+AGG | + | chr2_1:73027603-73027622 | None:intergenic | 15.0% |
| !!! | GTTAACTACTTTTTTTTAAA+GGG | + | chr2_1:73027714-73027733 | None:intergenic | 15.0% |
| !!! | AGTTAACTACTTTTTTTTAA+AGG | + | chr2_1:73027715-73027734 | None:intergenic | 15.0% |
| !! | AATTTATTCAAAGGTAATTT+AGG | - | chr2_1:73027842-73027861 | Msa0223480:intron | 15.0% |
| !!! | ATGATTTTTCTTTCTTTTAA+CGG | - | chr2_1:73028720-73028739 | Msa0223480:intron | 15.0% |
| !!! | AAATAGTCTTAAAAAAAACT+TGG | + | chr2_1:73028784-73028803 | None:intergenic | 15.0% |
| !!! | TATTGTTATTCTTTATTTCT+AGG | - | chr2_1:73029321-73029340 | Msa0223480:CDS | 15.0% |
| !!! | TATATATATAATTTGCAGGT+TGG | - | chr2_1:73025212-73025231 | Msa0223480:CDS | 20.0% |
| !!! | CTGTTAAGTTGAAAATAATA+AGG | + | chr2_1:73025431-73025450 | None:intergenic | 20.0% |
| !!! | CTTATTATTTTCAACTTAAC+AGG | - | chr2_1:73025429-73025448 | Msa0223480:intron | 20.0% |
| !! | TTGTAATGATCCAATATATT+AGG | - | chr2_1:73025946-73025965 | Msa0223480:CDS | 20.0% |
| !!! | AAAGAGTTTAAATCTTTTCT+AGG | - | chr2_1:73026439-73026458 | Msa0223480:intron | 20.0% |
| !! | GTGTCCAAATAATATTTATT+TGG | + | chr2_1:73027169-73027188 | None:intergenic | 20.0% |
| !!! | TGTGACCAAATATTTTTATT+TGG | - | chr2_1:73027288-73027307 | Msa0223480:intron | 20.0% |
| !!! | GTGACCAAATATTTTTATTT+GGG | - | chr2_1:73027289-73027308 | Msa0223480:intron | 20.0% |
| !! | CAAACCCAAATAAAAATATT+TGG | + | chr2_1:73027296-73027315 | None:intergenic | 20.0% |
| !!! | TTTTTCCTCTTAAGAATTTT+AGG | - | chr2_1:73027455-73027474 | Msa0223480:CDS | 20.0% |
| !!! | ATGTTTATTATTTGAAGTCA+AGG | + | chr2_1:73027511-73027530 | None:intergenic | 20.0% |
| !! | TTGATTGCTTATATATGAAA+CGG | + | chr2_1:73027679-73027698 | None:intergenic | 20.0% |
| !! | CAAAAACTCTATAATGTTTA+TGG | + | chr2_1:73027808-73027827 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTTCTTTTTCTT+TGG | + | chr2_1:73027908-73027927 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTACATAGATCT+CGG | + | chr2_1:73027967-73027986 | None:intergenic | 20.0% |
| !!! | GCTTTTGAAAACATTTTTTT+AGG | + | chr2_1:73028009-73028028 | None:intergenic | 20.0% |
| !! | ATAATCATGTAAGGAAAAAT+TGG | + | chr2_1:73028051-73028070 | None:intergenic | 20.0% |
| !! | ATCATAAAGATAATCATGTA+AGG | + | chr2_1:73028060-73028079 | None:intergenic | 20.0% |
| !! | TGAAATCTTATGTAGATTTA+TGG | - | chr2_1:73028098-73028117 | Msa0223480:intron | 20.0% |
| !! | GATTAAAAAGGACTAAAATA+AGG | + | chr2_1:73028237-73028256 | None:intergenic | 20.0% |
| !!! | TTGAAGAATACTGATTAAAA+AGG | + | chr2_1:73028249-73028268 | None:intergenic | 20.0% |
| !! | TAAACAATTGAAACTAAACT+TGG | + | chr2_1:73028309-73028328 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCAGTATATAG+CGG | - | chr2_1:73028988-73029007 | Msa0223480:intron | 20.0% |
| !!! | AAGAACATGAGAAAGTATTA+TGG | - | chr2_1:73024957-73024976 | Msa0223480:three_prime_UTR | 25.0% |
| !!! | AGAACATGAGAAAGTATTAT+GGG | - | chr2_1:73024958-73024977 | Msa0223480:three_prime_UTR | 25.0% |
| ! | TAACTTTGTCAAAGAAAATG+AGG | - | chr2_1:73025034-73025053 | Msa0223480:exon | 25.0% |
| !! | GTTAAAGAAATCCATTGATT+TGG | - | chr2_1:73025238-73025257 | Msa0223480:CDS | 25.0% |
| ! | CAATAAAGTCCTTCAAAAAA+TGG | - | chr2_1:73025261-73025280 | Msa0223480:CDS | 25.0% |
| ! | AAGTTGAAAATAATAAGGCA+CGG | + | chr2_1:73025426-73025445 | None:intergenic | 25.0% |
| ! | CCTTTATTGTCCAAATAATT+TGG | + | chr2_1:73025767-73025786 | None:intergenic | 25.0% |
| ! | CCAAATTATTTGGACAATAA+AGG | - | chr2_1:73025764-73025783 | Msa0223480:intron | 25.0% |
| ! | AGAAGGTAAAAGAAATAGTA+AGG | + | chr2_1:73025872-73025891 | None:intergenic | 25.0% |
| ! | AATTGAAATGAAAAGCAAGA+AGG | + | chr2_1:73025889-73025908 | None:intergenic | 25.0% |
| ! | GTTTAATTAATCTTGTCACA+TGG | - | chr2_1:73026099-73026118 | Msa0223480:intron | 25.0% |
| ! | CAAAAGTAGCAAATTAATGA+AGG | - | chr2_1:73026165-73026184 | Msa0223480:CDS | 25.0% |
| ! | CATAAAAATACCGAATTGTT+AGG | - | chr2_1:73026256-73026275 | Msa0223480:intron | 25.0% |
| ! | ATTTCTGTTGAACAATAAGA+TGG | - | chr2_1:73026557-73026576 | Msa0223480:intron | 25.0% |
| !!! | TCCTTTGTTTTATTCTCTTT+AGG | - | chr2_1:73026755-73026774 | Msa0223480:intron | 25.0% |
| ! | ACCTAAAGAGAATAAAACAA+AGG | + | chr2_1:73026759-73026778 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTCTCTTTAGG+TGG | - | chr2_1:73026758-73026777 | Msa0223480:intron | 25.0% |
| ! | GAAGGGATTATAAAAATGTT+TGG | - | chr2_1:73026792-73026811 | Msa0223480:intron | 25.0% |
| ! | TGTAATAGAAAGAAGAAAGA+AGG | + | chr2_1:73027638-73027657 | None:intergenic | 25.0% |
| ! | TGATTGCTTATATATGAAAC+GGG | + | chr2_1:73027678-73027697 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTACATAGATCTC+GGG | + | chr2_1:73027966-73027985 | None:intergenic | 25.0% |
| ! | ACTTATCTTACAGTGATTAT+GGG | + | chr2_1:73028195-73028214 | None:intergenic | 25.0% |
| ! | TACTTATCTTACAGTGATTA+TGG | + | chr2_1:73028196-73028215 | None:intergenic | 25.0% |
| ! | AACTAAACTTGGTTAACATT+TGG | + | chr2_1:73028298-73028317 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGTTTATTTGC+AGG | - | chr2_1:73028314-73028333 | Msa0223480:CDS | 25.0% |
| ! | ATTTAATGATGCAATTCTAC+AGG | - | chr2_1:73028464-73028483 | Msa0223480:CDS | 25.0% |
| ! | CATAGTAGTGAAAATATGTT+AGG | + | chr2_1:73028536-73028555 | None:intergenic | 25.0% |
| ! | TCTAACCGTATATAAATAGT+CGG | + | chr2_1:73028691-73028710 | None:intergenic | 25.0% |
| !! | TTTTCACAATAAGATAGTGA+GGG | + | chr2_1:73028858-73028877 | None:intergenic | 25.0% |
| ! | GGTGTTCTTGATAAAATTAA+CGG | + | chr2_1:73028938-73028957 | None:intergenic | 25.0% |
| !! | ATTTTATCAAGAACACCAAT+TGG | - | chr2_1:73028941-73028960 | Msa0223480:intron | 25.0% |
| ! | ATTATCTTTCATATGCCAAT+TGG | + | chr2_1:73028959-73028978 | None:intergenic | 25.0% |
| ! | GCTTACAATTTAAACTACAT+TGG | - | chr2_1:73029181-73029200 | Msa0223480:intron | 25.0% |
| ! | TTCAAAACGTTCATTATATG+AGG | - | chr2_1:73029234-73029253 | Msa0223480:CDS | 25.0% |
| ! | TGGATGATAGTTGTAAAAAT+AGG | + | chr2_1:73029286-73029305 | None:intergenic | 25.0% |
| ! | TTTACAACTATCATCCAATA+AGG | - | chr2_1:73029289-73029308 | Msa0223480:CDS | 25.0% |
| !! | GAAAAACAAAAGAAGCATCA+TGG | - | chr2_1:73024985-73025004 | Msa0223480:three_prime_UTR | 30.0% |
| AAAGTCCTTCAAAAAATGGA+TGG | - | chr2_1:73025265-73025284 | Msa0223480:CDS | 30.0% | |
| !! | ACTTGAAAGTAGTGCTATTT+GGG | + | chr2_1:73025464-73025483 | None:intergenic | 30.0% |
| AATTCCATGATGAGATTATG+AGG | + | chr2_1:73025519-73025538 | None:intergenic | 30.0% | |
| ! | TCATCATGGAATTTTCCATT+TGG | - | chr2_1:73025526-73025545 | Msa0223480:intron | 30.0% |
| ! | TCCATTTGGTGAGTAAAATA+TGG | - | chr2_1:73025540-73025559 | Msa0223480:intron | 30.0% |
| !! | TTTCTCTTGGTTTTTGTAAC+AGG | - | chr2_1:73025635-73025654 | Msa0223480:intron | 30.0% |
| TAGAAGAGAAGAAGAAGTAA+GGG | + | chr2_1:73025732-73025751 | None:intergenic | 30.0% | |
| CAAATAATTTGGTAGAACAG+TGG | + | chr2_1:73025756-73025775 | None:intergenic | 30.0% | |
| CACTGTTCTACCAAATTATT+TGG | - | chr2_1:73025754-73025773 | Msa0223480:intron | 30.0% | |
| !! | AAAGGCATTAAGATCATTGA+AGG | - | chr2_1:73025782-73025801 | Msa0223480:intron | 30.0% |
| AGCAACTCCTACATAAAAAA+TGG | - | chr2_1:73025822-73025841 | Msa0223480:intron | 30.0% | |
| GCAACTCCTACATAAAAAAT+GGG | - | chr2_1:73025823-73025842 | Msa0223480:intron | 30.0% | |
| !!! | TCTTGTCCCATTTTTTATGT+AGG | + | chr2_1:73025832-73025851 | None:intergenic | 30.0% |
| TTGATTCACTTTCAACTTCT+TGG | - | chr2_1:73026061-73026080 | Msa0223480:intron | 30.0% | |
| TGATTCACTTTCAACTTCTT+GGG | - | chr2_1:73026062-73026081 | Msa0223480:intron | 30.0% | |
| ATGTACCTTCTATTGTAGAA+AGG | - | chr2_1:73026123-73026142 | Msa0223480:CDS | 30.0% | |
| !! | ACCAAAATGATAATGGTCAT+CGG | + | chr2_1:73026336-73026355 | None:intergenic | 30.0% |
| TAGGTAGACCAAAATGATAA+TGG | + | chr2_1:73026343-73026362 | None:intergenic | 30.0% | |
| TGAACCTAATGTCAAAGAAT+CGG | - | chr2_1:73026893-73026912 | Msa0223480:intron | 30.0% | |
| !!! | TCGACGAAGTTTTAAATTCA+CGG | - | chr2_1:73026990-73027009 | Msa0223480:intron | 30.0% |
| ATTGCTCATTTAGTCATTCT+TGG | + | chr2_1:73027351-73027370 | None:intergenic | 30.0% | |
| !! | TCCTCTTAAGAATTTTAGGA+TGG | - | chr2_1:73027459-73027478 | Msa0223480:CDS | 30.0% |
| ACCATCCTAAAATTCTTAAG+AGG | + | chr2_1:73027463-73027482 | None:intergenic | 30.0% | |
| CAAGGTGAAAACATGAAATA+TGG | + | chr2_1:73027493-73027512 | None:intergenic | 30.0% | |
| AGGAATGATAGCATTAACTA+TGG | - | chr2_1:73027862-73027881 | Msa0223480:intron | 30.0% | |
| ! | GGAAAATTGTGCATTTTACA+AGG | + | chr2_1:73027944-73027963 | None:intergenic | 30.0% |
| !!! | TTTTTTGTACATAGATCTCG+GGG | + | chr2_1:73027965-73027984 | None:intergenic | 30.0% |
| !! | AGGAAAAATTGGTCTCTTTT+AGG | + | chr2_1:73028040-73028059 | None:intergenic | 30.0% |
| TATGGAACCAACAATATTAC+TGG | - | chr2_1:73028116-73028135 | Msa0223480:intron | 30.0% | |
| ATCATGACAGAAGAAATCTT+TGG | - | chr2_1:73028159-73028178 | Msa0223480:intron | 30.0% | |
| !! | AGTATTCTTCAAAAGTGTCA+AGG | - | chr2_1:73028257-73028276 | Msa0223480:CDS | 30.0% |
| TTCAATTGTTTATTTGCAGG+TGG | - | chr2_1:73028317-73028336 | Msa0223480:CDS | 30.0% | |
| ATCATTAAATACAATGCTCC+CGG | + | chr2_1:73028454-73028473 | None:intergenic | 30.0% | |
| TGTAGCCGACTATTTATATA+CGG | - | chr2_1:73028683-73028702 | Msa0223480:intron | 30.0% | |
| ! | CTTTTCACAATAAGATAGTG+AGG | + | chr2_1:73028859-73028878 | None:intergenic | 30.0% |
| !!! | GAAGTTACTACACTGATTTT+TGG | - | chr2_1:73029110-73029129 | Msa0223480:intron | 30.0% |
| !!! | GGAATACTTCTTGTTTTACT+CGG | - | chr2_1:73029202-73029221 | Msa0223480:CDS | 30.0% |
| CAATAATCAGCTATCCTTAT+TGG | + | chr2_1:73029306-73029325 | None:intergenic | 30.0% | |
| ! | AAAAGCACACATTAGAATCT+TGG | + | chr2_1:73029366-73029385 | None:intergenic | 30.0% |
| !! | ATGAGAAAGTATTATGGGAG+TGG | - | chr2_1:73024963-73024982 | Msa0223480:three_prime_UTR | 35.0% |
| TGGAGAGAATCACAACTAAA+AGG | - | chr2_1:73025005-73025024 | Msa0223480:three_prime_UTR | 35.0% | |
| GGAGAGAATCACAACTAAAA+GGG | - | chr2_1:73025006-73025025 | Msa0223480:three_prime_UTR | 35.0% | |
| AAATGAGGAAGAGATCTTGA+AGG | - | chr2_1:73025049-73025068 | Msa0223480:CDS | 35.0% | |
| GGACTTTATTGCCAAATCAA+TGG | + | chr2_1:73025252-73025271 | None:intergenic | 35.0% | |
| !! | CTTGAAAGTAGTGCTATTTG+GGG | + | chr2_1:73025463-73025482 | None:intergenic | 35.0% |
| ! | CACTTGAAAGTAGTGCTATT+TGG | + | chr2_1:73025465-73025484 | None:intergenic | 35.0% |
| TAGTCCTCATAATCTCATCA+TGG | - | chr2_1:73025512-73025531 | Msa0223480:intron | 35.0% | |
| ! | GCCATATTTTACTCACCAAA+TGG | + | chr2_1:73025544-73025563 | None:intergenic | 35.0% |
| GTTCAAAGTTGTGTTTCTCT+TGG | - | chr2_1:73025622-73025641 | Msa0223480:intron | 35.0% | |
| CTAGAAGAGAAGAAGAAGTA+AGG | + | chr2_1:73025733-73025752 | None:intergenic | 35.0% | |
| ! | TGGGACAAGATATTTTTCAC+TGG | - | chr2_1:73025842-73025861 | Msa0223480:CDS | 35.0% |
| TCGTGCACTTCCTAATATAT+TGG | + | chr2_1:73025959-73025978 | None:intergenic | 35.0% | |
| CATTGCCTTTCTACAATAGA+AGG | + | chr2_1:73026131-73026150 | None:intergenic | 35.0% | |
| TCTATTGTAGAAAGGCAATG+TGG | - | chr2_1:73026131-73026150 | Msa0223480:CDS | 35.0% | |
| ! | ATGAGTTGGGATTCAATCAA+CGG | + | chr2_1:73026295-73026314 | None:intergenic | 35.0% |
| ! | TCCGATGACCATTATCATTT+TGG | - | chr2_1:73026332-73026351 | Msa0223480:intron | 35.0% |
| GTCCACAATGACTATATGTT+AGG | - | chr2_1:73026392-73026411 | Msa0223480:intron | 35.0% | |
| CTCCTAACATATAGTCATTG+TGG | + | chr2_1:73026397-73026416 | None:intergenic | 35.0% | |
| TAGGACATTCGCAAAATGAT+CGG | - | chr2_1:73026458-73026477 | Msa0223480:intron | 35.0% | |
| !! | GAATTTTGGTGGCAAAGTAT+GGG | - | chr2_1:73026589-73026608 | Msa0223480:intron | 35.0% |
| !! | AATTTTGGTGGCAAAGTATG+GGG | - | chr2_1:73026590-73026609 | Msa0223480:intron | 35.0% |
| ! | AACTGAAGCTCTTTTCTACA+AGG | + | chr2_1:73026653-73026672 | None:intergenic | 35.0% |
| !!! | TTTCCTGCTTTTTACCAATG+TGG | + | chr2_1:73026676-73026695 | None:intergenic | 35.0% |
| TCTTTAGGTGGAGTTAATGA+AGG | - | chr2_1:73026770-73026789 | Msa0223480:intron | 35.0% | |
| ! | CAATGCTGTTGGATTCTTTT+GGG | + | chr2_1:73026824-73026843 | None:intergenic | 35.0% |
| TTAACCGGAAAAGTCTTTCA+TGG | - | chr2_1:73027135-73027154 | Msa0223480:intron | 35.0% | |
| TTCTTGGATAAGTCAATTCG+AGG | + | chr2_1:73027335-73027354 | None:intergenic | 35.0% | |
| TGCTTATATATGAAACGGGA+GGG | + | chr2_1:73027674-73027693 | None:intergenic | 35.0% | |
| TTGCTTATATATGAAACGGG+AGG | + | chr2_1:73027675-73027694 | None:intergenic | 35.0% | |
| TGTTTATGGAACAAGTTCTC+AGG | + | chr2_1:73027794-73027813 | None:intergenic | 35.0% | |
| !!! | TGGTCTCTTTTAGGTTCATT+TGG | + | chr2_1:73028031-73028050 | None:intergenic | 35.0% |
| !! | TCATGATTGCTGATTCAAGT+GGG | + | chr2_1:73028146-73028165 | None:intergenic | 35.0% |
| GCATAAATTGCTAGAGGTTT+AGG | + | chr2_1:73028381-73028400 | None:intergenic | 35.0% | |
| ! | GTGAAAGCATAAATTGCTAG+AGG | + | chr2_1:73028387-73028406 | None:intergenic | 35.0% |
| ! | TTGGTATCTGAAACATCATC+CGG | - | chr2_1:73028432-73028451 | Msa0223480:intron | 35.0% |
| TCACTACTATGAAACCAGTA+AGG | - | chr2_1:73028545-73028564 | Msa0223480:CDS | 35.0% | |
| CTTGCAAAACAAAACCTTAC+TGG | + | chr2_1:73028562-73028581 | None:intergenic | 35.0% | |
| AGAGAAGTTAAGTGGAAGTT+TGG | + | chr2_1:73028588-73028607 | None:intergenic | 35.0% | |
| !!! | ACTACACTGATTTTTGGTTC+AGG | - | chr2_1:73029116-73029135 | Msa0223480:intron | 35.0% |
| !! | AACTTGTTAAGATTCCATGG+AGG | + | chr2_1:73029145-73029164 | None:intergenic | 35.0% |
| !! | TGGAACTTGTTAAGATTCCA+TGG | + | chr2_1:73029148-73029167 | None:intergenic | 35.0% |
| TGTAAGCTTCTTCAAGTAGT+TGG | + | chr2_1:73029168-73029187 | None:intergenic | 35.0% | |
| CTTCCCTAAATCCTTCTTGA+GGG | + | chr2_1:73025075-73025094 | None:intergenic | 40.0% | |
| !! | TTTAGGGAAGCATCATGTTG+AGG | - | chr2_1:73025085-73025104 | Msa0223480:CDS | 40.0% |
| !! | TGTTGAGGCTTTTAGAGATG+AGG | - | chr2_1:73025100-73025119 | Msa0223480:CDS | 40.0% |
| TCCTTCAAAAAATGGATGGC+TGG | - | chr2_1:73025269-73025288 | Msa0223480:CDS | 40.0% | |
| !!! | ACCAGCCATCCATTTTTTGA+AGG | + | chr2_1:73025273-73025292 | None:intergenic | 40.0% |
| AAAATGGATGGCTGGTAAAG+AGG | - | chr2_1:73025277-73025296 | Msa0223480:CDS | 40.0% | |
| ATTATGAGGACTAGACCAAG+AGG | + | chr2_1:73025505-73025524 | None:intergenic | 40.0% | |
| !!! | TTTTGTAACAGGAGTGTCCT+TGG | - | chr2_1:73025646-73025665 | Msa0223480:intron | 40.0% |
| AGTCCTAAAACCTTCAGAGT+TGG | - | chr2_1:73025706-73025725 | Msa0223480:intron | 40.0% | |
| GGCATTAAGATCATTGAAGG+TGG | - | chr2_1:73025785-73025804 | Msa0223480:intron | 40.0% | |
| ATTGAAGGTGGACCAGAAAT+TGG | - | chr2_1:73025797-73025816 | Msa0223480:intron | 40.0% | |
| ! | TATATTAGGAAGTGCACGAG+TGG | - | chr2_1:73025960-73025979 | Msa0223480:CDS | 40.0% |
| ! | ATATTAGGAAGTGCACGAGT+GGG | - | chr2_1:73025961-73025980 | Msa0223480:intron | 40.0% |
| !! | ACTCCTATAACTCTGGAGTT+AGG | - | chr2_1:73026018-73026037 | Msa0223480:intron | 40.0% |
| !! | CTCCTATAACTCTGGAGTTA+GGG | - | chr2_1:73026019-73026038 | Msa0223480:intron | 40.0% |
| !! | TCCTATAACTCTGGAGTTAG+GGG | - | chr2_1:73026020-73026039 | Msa0223480:intron | 40.0% |
| TGTAGAAAGGCAATGTGGAA+TGG | - | chr2_1:73026136-73026155 | Msa0223480:CDS | 40.0% | |
| TGGGATTCAATCAACGGTTA+CGG | + | chr2_1:73026289-73026308 | None:intergenic | 40.0% | |
| CACAGACTAGTGAATGAGTT+GGG | + | chr2_1:73026308-73026327 | None:intergenic | 40.0% | |
| TCACAGACTAGTGAATGAGT+TGG | + | chr2_1:73026309-73026328 | None:intergenic | 40.0% | |
| ! | GATGGCTGTGAAACGAATTT+TGG | - | chr2_1:73026575-73026594 | Msa0223480:intron | 40.0% |
| !! | CGAATTTTGGTGGCAAAGTA+TGG | - | chr2_1:73026588-73026607 | Msa0223480:intron | 40.0% |
| AAAGAGCTTCAGTTCCACAT+TGG | - | chr2_1:73026659-73026678 | Msa0223480:intron | 40.0% | |
| GTTCCACATTGGTAAAAAGC+AGG | - | chr2_1:73026670-73026689 | Msa0223480:intron | 40.0% | |
| TAGGTGGAGTTAATGAAGGA+AGG | - | chr2_1:73026774-73026793 | Msa0223480:intron | 40.0% | |
| AGGTGGAGTTAATGAAGGAA+GGG | - | chr2_1:73026775-73026794 | Msa0223480:intron | 40.0% | |
| ! | GCAATGCTGTTGGATTCTTT+TGG | + | chr2_1:73026825-73026844 | None:intergenic | 40.0% |
| AAGAATCCAACAGCATTGCA+AGG | - | chr2_1:73026826-73026845 | Msa0223480:intron | 40.0% | |
| AACAATCCTTGCAATGCTGT+TGG | + | chr2_1:73026835-73026854 | None:intergenic | 40.0% | |
| GAGGAGACTCTTGATTCTAT+TGG | + | chr2_1:73026871-73026890 | None:intergenic | 40.0% | |
| CTTTGACATTAGGTTCACTG+AGG | + | chr2_1:73026890-73026909 | None:intergenic | 40.0% | |
| ACCTAATGTCAAAGAATCGG+TGG | - | chr2_1:73026896-73026915 | Msa0223480:intron | 40.0% | |
| !! | ACCACCGATTCTTTGACATT+AGG | + | chr2_1:73026900-73026919 | None:intergenic | 40.0% |
| ! | GTCAAAGAATCGGTGGTTTT+TGG | - | chr2_1:73026903-73026922 | Msa0223480:intron | 40.0% |
| !! | AAAGAATCGGTGGTTTTTGG+TGG | - | chr2_1:73026906-73026925 | Msa0223480:intron | 40.0% |
| ! | GTGTCCATGAAAGACTTTTC+CGG | + | chr2_1:73027142-73027161 | None:intergenic | 40.0% |
| AAGTCAATTCGAGGCACAAT+TGG | + | chr2_1:73027326-73027345 | None:intergenic | 40.0% | |
| GAAGGCGAGCTATAGAAATA+AGG | + | chr2_1:73027620-73027639 | None:intergenic | 40.0% | |
| TATGGAACAAGTTCTCAGGA+GGG | + | chr2_1:73027790-73027809 | None:intergenic | 40.0% | |
| TTATGGAACAAGTTCTCAGG+AGG | + | chr2_1:73027791-73027810 | None:intergenic | 40.0% | |
| !! | ATGATTGCTGATTCAAGTGG+GGG | + | chr2_1:73028144-73028163 | None:intergenic | 40.0% |
| !! | CATGATTGCTGATTCAAGTG+GGG | + | chr2_1:73028145-73028164 | None:intergenic | 40.0% |
| !! | GTCATGATTGCTGATTCAAG+TGG | + | chr2_1:73028147-73028166 | None:intergenic | 40.0% |
| TACAGTGATTATGGGAAGCA+CGG | + | chr2_1:73028187-73028206 | None:intergenic | 40.0% | |
| CAAAACACTGCAGAGAAGAT+TGG | - | chr2_1:73028413-73028432 | Msa0223480:intron | 40.0% | |
| ! | TGGTATCTGAAACATCATCC+GGG | - | chr2_1:73028433-73028452 | Msa0223480:intron | 40.0% |
| AGCTTGAGAGAGAAGTTAAG+TGG | + | chr2_1:73028596-73028615 | None:intergenic | 40.0% | |
| AGTCGGCTACATCATAAAAC+AGG | + | chr2_1:73028674-73028693 | None:intergenic | 40.0% | |
| GCATCGTAAGTCGATTGTAT+AGG | - | chr2_1:73028756-73028775 | Msa0223480:intron | 40.0% | |
| ATTCACCAACTCCTCCAAAT+GGG | + | chr2_1:73029021-73029040 | None:intergenic | 40.0% | |
| TGTGGATTTGGCAAGTATCA+TGG | - | chr2_1:73029040-73029059 | Msa0223480:CDS | 40.0% | |
| GTGGATTTGGCAAGTATCAT+GGG | - | chr2_1:73029041-73029060 | Msa0223480:CDS | 40.0% | |
| ATTCAGTCACCATAAAGCTG+TGG | - | chr2_1:73029081-73029100 | Msa0223480:intron | 40.0% | |
| TGGTAACATGGAGTTCTCAG+TGG | - | chr2_1:73024914-73024933 | Msa0223480:three_prime_UTR | 45.0% | |
| AAGGCCCTCAAGAAGGATTT+AGG | - | chr2_1:73025068-73025087 | Msa0223480:CDS | 45.0% | |
| AGGCCCTCAAGAAGGATTTA+GGG | - | chr2_1:73025069-73025088 | Msa0223480:CDS | 45.0% | |
| GCTTCCCTAAATCCTTCTTG+AGG | + | chr2_1:73025076-73025095 | None:intergenic | 45.0% | |
| GAAATTGTTGCTGAGCCTCT+TGG | - | chr2_1:73025487-73025506 | Msa0223480:intron | 45.0% | |
| GTGTCCTTGGAGCCATTAAT+TGG | - | chr2_1:73025659-73025678 | Msa0223480:intron | 45.0% | |
| GCAGCTATGGCTCCAATTAA+TGG | + | chr2_1:73025674-73025693 | None:intergenic | 45.0% | |
| TTAATTGGAGCCATAGCTGC+TGG | - | chr2_1:73025674-73025693 | Msa0223480:intron | 45.0% | |
| TGCAACATTTCCAGCAGCTA+TGG | + | chr2_1:73025687-73025706 | None:intergenic | 45.0% | |
| AGGAGTTGCTCTCCAATTTC+TGG | + | chr2_1:73025812-73025831 | None:intergenic | 45.0% | |
| ! | TATTAGGAAGTGCACGAGTG+GGG | - | chr2_1:73025962-73025981 | Msa0223480:intron | 45.0% |
| GATTGTTATGTCTGCAGCAG+TGG | - | chr2_1:73025987-73026006 | Msa0223480:intron | 45.0% | |
| GCATCTCACTCCTATAACTC+TGG | - | chr2_1:73026011-73026030 | Msa0223480:intron | 45.0% | |
| !! | CCTATAACTCTGGAGTTAGG+GGG | - | chr2_1:73026021-73026040 | Msa0223480:intron | 45.0% |
| GAAAGTGAATCAACCAGTGC+TGG | + | chr2_1:73026054-73026073 | None:intergenic | 45.0% | |
| TTCAACTTCTTGGGACAGAG+AGG | - | chr2_1:73026071-73026090 | Msa0223480:intron | 45.0% | |
| CGGTGTGCAACCTAACAATT+CGG | + | chr2_1:73026269-73026288 | None:intergenic | 45.0% | |
| ! | GGCTGTGAAACGAATTTTGG+TGG | - | chr2_1:73026578-73026597 | Msa0223480:intron | 45.0% |
| CAATTCGAGGCACAATTGGT+TGG | + | chr2_1:73027322-73027341 | None:intergenic | 45.0% | |
| ! | AGTTCTCAGGAGGGATGTTT+TGG | + | chr2_1:73027781-73027800 | None:intergenic | 45.0% |
| GGGGGATCCAGTAATATTGT+TGG | + | chr2_1:73028126-73028145 | None:intergenic | 45.0% | |
| ! | ACAGTGATTATGGGAAGCAC+GGG | + | chr2_1:73028186-73028205 | None:intergenic | 45.0% |
| CAGGTGGAGAAGATTGAAGA+CGG | - | chr2_1:73028333-73028352 | Msa0223480:intron | 45.0% | |
| !! | ATAGCGGATACCATCCCATT+TGG | - | chr2_1:73029004-73029023 | Msa0223480:intron | 45.0% |
| CATTCACCAACTCCTCCAAA+TGG | + | chr2_1:73029022-73029041 | None:intergenic | 45.0% | |
| !! | TTTGGAGGAGTTGGTGAATG+TGG | - | chr2_1:73029022-73029041 | Msa0223480:CDS | 45.0% |
| !! | GGAGTTGGTGAATGTGGATT+TGG | - | chr2_1:73029028-73029047 | Msa0223480:CDS | 45.0% |
| TTCTCCTAGCCACAGCTTTA+TGG | + | chr2_1:73029093-73029112 | None:intergenic | 45.0% | |
| ! | TTTGGTTCAGGTTTCCTCCA+TGG | - | chr2_1:73029128-73029147 | Msa0223480:intron | 45.0% |
| !!! | ATATTAATAAAACTTTTTTT+AGG | + | chr2_1:73026362-73026381 | None:intergenic | 5.0% |
| !! | TTAAAAAATAAATAAAATCA+GGG | + | chr2_1:73026518-73026537 | None:intergenic | 5.0% |
| !! | TTTAAAAAATAAATAAAATC+AGG | + | chr2_1:73026519-73026538 | None:intergenic | 5.0% |
| !! | TAAAATTTAAATTTATTCAA+AGG | - | chr2_1:73027833-73027852 | Msa0223480:intron | 5.0% |
| GGAGTTCTCAGTGGAAGCTT+TGG | - | chr2_1:73024923-73024942 | Msa0223480:three_prime_UTR | 50.0% | |
| GATCTTGAAGGCCCTCAAGA+AGG | - | chr2_1:73025061-73025080 | Msa0223480:CDS | 50.0% | |
| GGCTCCAATTAATGGCTCCA+AGG | + | chr2_1:73025666-73025685 | None:intergenic | 50.0% | |
| !! | GGGCCAACTCTGAAGGTTTT+AGG | + | chr2_1:73025712-73025731 | None:intergenic | 50.0% |
| GAAGTAAGGGCCAACTCTGA+AGG | + | chr2_1:73025719-73025738 | None:intergenic | 50.0% | |
| CCCCCTAACTCCAGAGTTAT+AGG | + | chr2_1:73026024-73026043 | None:intergenic | 50.0% | |
| ACCATCCCATTTGGAGGAGT+TGG | - | chr2_1:73029013-73029032 | Msa0223480:intron | 50.0% | |
| ACCAACTCCTCCAAATGGGA+TGG | + | chr2_1:73029017-73029036 | None:intergenic | 50.0% | |
| GTCACCATAAAGCTGTGGCT+AGG | - | chr2_1:73029086-73029105 | Msa0223480:intron | 50.0% | |
| AGGGGGAAAATGTCCAGCAC+TGG | - | chr2_1:73026038-73026057 | Msa0223480:intron | 55.0% | |
| GCAAAGTATGGGGCTTGTGC+AGG | - | chr2_1:73026600-73026619 | Msa0223480:intron | 55.0% | |
| GCGGATACCATCCCATTTGG+AGG | - | chr2_1:73029007-73029026 | Msa0223480:intron | 55.0% | |
| ! | TAGGAAGTGCACGAGTGGGG+AGG | - | chr2_1:73025965-73025984 | Msa0223480:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73024908 | 73029407 | 73024908 | ID=Msa0223480;Name=Msa0223480 |
| chr2_1 | mRNA | 73024908 | 73029407 | 73024908 | ID=Msa0223480-mRNA-1;Parent=Msa0223480;Name=Msa0223480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=13|1|1|1|1|1|10|140|494 |
| chr2_1 | exon | 73024908 | 73025314 | 73024908 | ID=Msa0223480-mRNA-1:exon:21293;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73025830 | 73025979 | 73025830 | ID=Msa0223480-mRNA-1:exon:21292;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73026112 | 73026202 | 73026112 | ID=Msa0223480-mRNA-1:exon:21291;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73027366 | 73027538 | 73027366 | ID=Msa0223480-mRNA-1:exon:21290;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73027635 | 73027739 | 73027635 | ID=Msa0223480-mRNA-1:exon:21289;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73028223 | 73028347 | 73028223 | ID=Msa0223480-mRNA-1:exon:21288;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73028452 | 73028658 | 73028452 | ID=Msa0223480-mRNA-1:exon:21287;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73028768 | 73028864 | 73028768 | ID=Msa0223480-mRNA-1:exon:21286;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73029017 | 73029085 | 73029017 | ID=Msa0223480-mRNA-1:exon:21285;Parent=Msa0223480-mRNA-1 |
| chr2_1 | exon | 73029194 | 73029407 | 73029194 | ID=Msa0223480-mRNA-1:exon:21284;Parent=Msa0223480-mRNA-1 |
| chr2_1 | five_prime_UTR | 73029395 | 73029407 | 73029395 | ID=Msa0223480-mRNA-1:five_prime_utr;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73029194 | 73029394 | 73029194 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73029017 | 73029085 | 73029017 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73028768 | 73028864 | 73028768 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73028452 | 73028658 | 73028452 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73028223 | 73028347 | 73028223 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73027635 | 73027739 | 73027635 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73027366 | 73027538 | 73027366 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73026112 | 73026202 | 73026112 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73025830 | 73025979 | 73025830 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | CDS | 73025048 | 73025314 | 73025048 | ID=Msa0223480-mRNA-1:cds;Parent=Msa0223480-mRNA-1 |
| chr2_1 | three_prime_UTR | 73024908 | 73025047 | 73024908 | ID=Msa0223480-mRNA-1:three_prime_utr;Parent=Msa0223480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
