Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264600 | XP_003597427.2 | 96.964 | 494 | 15 | 0 | 1 | 494 | 1 | 494 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264600 | sp|Q70E96|AL3F1_ARATH | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264600 | G7IUB3 | 96.964 | 494 | 15 | 0 | 1 | 494 | 13 | 506 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223480 | Msa0264600 | 0.859517 | 3.917402e-63 | -8.615850e-47 |
| Msa0264600 | Msa0295010 | 0.896765 | 2.694844e-76 | -8.615850e-47 |
| Msa0264600 | Msa0339990 | 0.998418 | 1.676208e-264 | -8.615850e-47 |
| Msa0264600 | Msa0601110 | 0.806731 | 7.133179e-50 | -8.615850e-47 |
| Msa0264600 | Msa0601120 | 0.803493 | 3.395243e-49 | -8.615850e-47 |
| Msa0264600 | Msa0641620 | 0.809360 | 1.966356e-50 | -8.615850e-47 |
| Msa0264600 | Msa0680150 | 0.821394 | 4.132845e-53 | -8.615850e-47 |
| Msa0264600 | Msa0722940 | 0.801311 | 9.558030e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264600 | MtrunA17_Chr2g0328781 | 96.964 | 494 | 15 | 0 | 1 | 494 | 13 | 506 | 0.0 | 984 |
| Msa0264600 | MtrunA17_Chr4g0032441 | 71.855 | 469 | 131 | 1 | 5 | 472 | 1 | 469 | 0.0 | 672 |
| Msa0264600 | MtrunA17_Chr8g0372381 | 56.458 | 480 | 202 | 2 | 8 | 483 | 9 | 485 | 0.0 | 578 |
| Msa0264600 | MtrunA17_Chr8g0384741 | 47.447 | 470 | 244 | 1 | 12 | 481 | 73 | 539 | 5.35e-158 | 459 |
| Msa0264600 | MtrunA17_Chr3g0124811 | 45.929 | 479 | 256 | 1 | 3 | 481 | 13 | 488 | 1.60e-157 | 456 |
| Msa0264600 | MtrunA17_Chr1g0159811 | 47.470 | 415 | 215 | 1 | 3 | 417 | 11 | 422 | 5.28e-135 | 399 |
| Msa0264600 | MtrunA17_Chr3g0129271 | 57.068 | 191 | 82 | 0 | 175 | 365 | 31 | 221 | 8.06e-72 | 229 |
| Msa0264600 | MtrunA17_Chr2g0294411 | 26.966 | 445 | 294 | 10 | 29 | 453 | 102 | 535 | 1.92e-40 | 153 |
| Msa0264600 | MtrunA17_Chr2g0310091 | 28.775 | 351 | 238 | 9 | 104 | 448 | 193 | 537 | 1.11e-39 | 150 |
| Msa0264600 | MtrunA17_Chr4g0009161 | 62.857 | 105 | 38 | 1 | 175 | 278 | 116 | 220 | 5.58e-35 | 130 |
| Msa0264600 | MtrunA17_Chr3g0118121 | 27.521 | 476 | 301 | 15 | 1 | 454 | 47 | 500 | 4.63e-33 | 131 |
| Msa0264600 | MtrunA17_Chr3g0118081 | 26.598 | 485 | 294 | 13 | 1 | 454 | 77 | 530 | 1.26e-32 | 130 |
| Msa0264600 | MtrunA17_Chr4g0059521 | 28.477 | 453 | 291 | 14 | 23 | 454 | 60 | 500 | 3.26e-32 | 129 |
| Msa0264600 | MtrunA17_Chr4g0059221 | 27.876 | 452 | 299 | 14 | 2 | 440 | 97 | 534 | 2.84e-30 | 124 |
| Msa0264600 | MtrunA17_Chr6g0485301 | 29.817 | 436 | 260 | 18 | 39 | 456 | 94 | 501 | 1.45e-29 | 121 |
| Msa0264600 | MtrunA17_Chr8g0365221 | 28.285 | 449 | 293 | 15 | 6 | 440 | 98 | 531 | 1.37e-28 | 119 |
| Msa0264600 | MtrunA17_Chr8g0390651 | 26.439 | 469 | 309 | 13 | 2 | 456 | 56 | 502 | 6.47e-28 | 116 |
| Msa0264600 | MtrunA17_Chr3g0117861 | 26.562 | 448 | 302 | 13 | 6 | 440 | 99 | 532 | 3.51e-27 | 114 |
| Msa0264600 | MtrunA17_Chr8g0390631 | 27.840 | 449 | 270 | 19 | 30 | 456 | 77 | 493 | 4.51e-27 | 114 |
| Msa0264600 | MtrunA17_Chr6g0485311 | 27.962 | 422 | 271 | 16 | 39 | 445 | 92 | 495 | 6.38e-26 | 110 |
| Msa0264600 | MtrunA17_Chr4g0074171 | 26.966 | 445 | 281 | 15 | 2 | 423 | 44 | 467 | 3.11e-25 | 108 |
| Msa0264600 | MtrunA17_Chr1g0149961 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 2.72e-24 | 105 |
| Msa0264600 | MtrunA17_Chr2g0300801 | 25.779 | 353 | 241 | 9 | 105 | 447 | 152 | 493 | 1.04e-18 | 89.0 |
| Msa0264600 | MtrunA17_Chr2g0279751 | 27.097 | 310 | 204 | 10 | 105 | 401 | 147 | 447 | 1.37e-17 | 85.5 |
| Msa0264600 | MtrunA17_Chr4g0049641 | 26.774 | 310 | 205 | 10 | 105 | 401 | 174 | 474 | 3.53e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264600 | AT4G36250.1 | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 564 |
| Msa0264600 | AT1G44170.1 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 4.13e-162 | 468 |
| Msa0264600 | AT1G44170.2 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 4.13e-162 | 468 |
| Msa0264600 | AT4G34240.4 | 49.469 | 471 | 235 | 1 | 12 | 482 | 64 | 531 | 1.14e-157 | 459 |
| Msa0264600 | AT4G34240.1 | 49.469 | 471 | 235 | 1 | 12 | 482 | 79 | 546 | 2.36e-157 | 458 |
| Msa0264600 | AT1G44170.3 | 49.761 | 418 | 207 | 1 | 65 | 482 | 6 | 420 | 8.65e-149 | 432 |
| Msa0264600 | AT4G34240.3 | 51.478 | 406 | 194 | 1 | 77 | 482 | 2 | 404 | 1.89e-141 | 413 |
| Msa0264600 | AT4G34240.2 | 49.206 | 315 | 157 | 1 | 12 | 326 | 79 | 390 | 1.02e-96 | 298 |
| Msa0264600 | AT3G66658.2 | 27.406 | 478 | 312 | 11 | 23 | 471 | 96 | 567 | 5.63e-47 | 172 |
| Msa0264600 | AT3G66658.1 | 27.477 | 444 | 296 | 9 | 23 | 446 | 96 | 533 | 4.13e-46 | 169 |
| Msa0264600 | AT1G79440.1 | 30.460 | 348 | 222 | 9 | 104 | 441 | 184 | 521 | 1.17e-40 | 153 |
| Msa0264600 | AT1G74920.2 | 29.452 | 438 | 285 | 14 | 30 | 454 | 69 | 495 | 2.05e-35 | 138 |
| Msa0264600 | AT1G74920.1 | 29.452 | 438 | 285 | 14 | 30 | 454 | 74 | 500 | 2.87e-35 | 138 |
| Msa0264600 | AT3G48170.1 | 26.526 | 475 | 304 | 16 | 6 | 454 | 45 | 500 | 1.70e-30 | 124 |
| Msa0264600 | AT1G23800.1 | 27.434 | 452 | 301 | 14 | 2 | 440 | 87 | 524 | 3.56e-30 | 124 |
| Msa0264600 | AT3G48000.1 | 27.212 | 452 | 302 | 13 | 2 | 440 | 91 | 528 | 4.57e-28 | 117 |
| Msa0264600 | AT3G24503.1 | 27.869 | 427 | 274 | 18 | 30 | 440 | 83 | 491 | 1.80e-25 | 109 |
| Msa0264600 | AT2G24270.2 | 28.615 | 325 | 208 | 10 | 108 | 423 | 198 | 507 | 2.29e-23 | 103 |
| Msa0264600 | AT2G24270.3 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.09e-23 | 102 |
| Msa0264600 | AT2G24270.1 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.09e-23 | 102 |
| Msa0264600 | AT2G24270.4 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.42e-23 | 102 |
| Msa0264600 | AT1G54100.2 | 26.286 | 350 | 237 | 9 | 108 | 447 | 154 | 492 | 3.96e-18 | 87.4 |
| Msa0264600 | AT1G54100.1 | 26.286 | 350 | 237 | 9 | 108 | 447 | 154 | 492 | 3.96e-18 | 87.4 |
| Msa0264600 | AT1G23800.2 | 28.213 | 319 | 203 | 13 | 2 | 307 | 87 | 392 | 2.64e-15 | 78.2 |
| Msa0264600 | AT2G14170.2 | 23.288 | 438 | 298 | 12 | 29 | 443 | 58 | 480 | 3.24e-12 | 68.9 |
| Msa0264600 | AT2G14170.1 | 23.288 | 438 | 298 | 12 | 29 | 443 | 167 | 589 | 4.09e-12 | 68.9 |
| Msa0264600 | AT2G14170.3 | 23.919 | 393 | 272 | 10 | 29 | 404 | 167 | 549 | 2.43e-11 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTATGTAGATTTA+TGG | 0.118638 | 2_2:+64555901 | Msa0264600:intron |
| CACTGTTCTACCAAATTATT+TGG | 0.132543 | 2_2:+64553560 | Msa0264600:CDS |
| TATTGTTATTCTTTATTTCT+AGG | 0.144314 | 2_2:+64557123 | Msa0264600:three_prime_UTR |
| CACTTGAAAGTAGTGCTATT+TGG | 0.163353 | 2_2:-64553269 | None:intergenic |
| TTCTCCTAGCCACAGCTTTA+TGG | 0.164740 | 2_2:-64556892 | None:intergenic |
| AAGGCCCTCAAGAAGGATTT+AGG | 0.176467 | 2_2:+64552868 | Msa0264600:CDS |
| AGGAGTTGCTCTCCAATTTC+TGG | 0.180506 | 2_2:-64553615 | None:intergenic |
| CAATAATCAGCTATCCTTAT+TGG | 0.190072 | 2_2:-64557105 | None:intergenic |
| CCATTATTGTCCAAATAATT+TGG | 0.194174 | 2_2:-64553570 | None:intergenic |
| TTGATTCACTTTCAACTTCT+TGG | 0.229573 | 2_2:+64553867 | Msa0264600:CDS |
| TACTTATCTTACAGTGATAA+TGG | 0.233953 | 2_2:-64555996 | None:intergenic |
| ACTTGAAAGTAGTGCTATTT+GGG | 0.262171 | 2_2:-64553268 | None:intergenic |
| CCAAATTATTTGGACAATAA+TGG | 0.270029 | 2_2:+64553570 | Msa0264600:CDS |
| TATGGAACCAACAATATTAC+TGG | 0.285040 | 2_2:+64555919 | Msa0264600:CDS |
| GCATAAATTGCTAGAGGTTT+AGG | 0.288414 | 2_2:-64556181 | None:intergenic |
| TTTACAACTATCATCCAATA+AGG | 0.295369 | 2_2:+64557091 | Msa0264600:three_prime_UTR |
| GATGGCTGTGAAACGAATTT+TGG | 0.298929 | 2_2:+64554379 | Msa0264600:intron |
| GTGTCCTTGGAGCCATTAAT+TGG | 0.298989 | 2_2:+64553465 | Msa0264600:CDS |
| ATTGAAGGTGGACCAGAAAT+TGG | 0.299642 | 2_2:+64553603 | Msa0264600:CDS |
| GTTAAAGAAATCCATTGATT+TGG | 0.305202 | 2_2:+64553045 | Msa0264600:CDS |
| AAGAACATGAGAAAGTATTA+TGG | 0.305368 | 2_2:+64552757 | Msa0264600:CDS |
| GCAGCTATGGCTCCAATTAA+TGG | 0.306017 | 2_2:-64553477 | None:intergenic |
| ACTCCTATAACTCTGGAGTT+AGG | 0.328012 | 2_2:+64553824 | Msa0264600:CDS |
| AAAAGCACACATTAGAATCT+TGG | 0.333702 | 2_2:-64557165 | None:intergenic |
| GAGGAGACTCTTGATTCTAT+TGG | 0.336102 | 2_2:-64554672 | None:intergenic |
| TGTAAGCTTCTTCAAGTAGT+TGG | 0.339552 | 2_2:-64556967 | None:intergenic |
| TGATTCACTTTCAACTTCTT+GGG | 0.343615 | 2_2:+64553868 | Msa0264600:CDS |
| TGGAGAGAATCACAACTAAA+AGG | 0.351972 | 2_2:+64552805 | Msa0264600:CDS |
| GGAGTTCTCAGTGGAAGCTT+TGG | 0.372513 | 2_2:+64552723 | Msa0264600:CDS |
| CTCCTATAACTCTGGAGTTA+GGG | 0.372962 | 2_2:+64553825 | Msa0264600:CDS |
| TTCAAAACGTTCATTATATG+AGG | 0.382788 | 2_2:+64557036 | Msa0264600:CDS |
| GGTGCATCAGTCTCTAATAT+TGG | 0.389938 | 2_2:+64552694 | None:intergenic |
| ACCACCGATTCTTTGACATT+AGG | 0.390930 | 2_2:-64554701 | None:intergenic |
| AGGCCCTCAAGAAGGATTTA+GGG | 0.400687 | 2_2:+64552869 | Msa0264600:CDS |
| GGACTTTATTGCCAAATCAA+TGG | 0.403173 | 2_2:-64553056 | None:intergenic |
| AGAACATGAGAAAGTATTAT+GGG | 0.405722 | 2_2:+64552758 | Msa0264600:CDS |
| ACTTATCTTACAGTGATAAT+GGG | 0.411701 | 2_2:-64555995 | None:intergenic |
| GGAGTTGGTGAATGTGGATT+TGG | 0.413532 | 2_2:+64556830 | Msa0264600:CDS |
| ACCATCCCATTTGGAGGAGT+TGG | 0.443845 | 2_2:+64556815 | Msa0264600:CDS |
| ATAGCGGATACCATCCCATT+TGG | 0.449228 | 2_2:+64556806 | Msa0264600:CDS |
| AACAATCCTTGCAATGCTGT+TGG | 0.454731 | 2_2:-64554636 | None:intergenic |
| ATTTAATGATGCAATTCTAC+AGG | 0.457393 | 2_2:+64556267 | Msa0264600:CDS |
| GAAATTGTTGCTGAGCCTCT+TGG | 0.457989 | 2_2:+64553294 | Msa0264600:CDS |
| TTTGGTTCAGGTTTCCTCCA+TGG | 0.459950 | 2_2:+64556930 | Msa0264600:CDS |
| CTTCCCTAAATCCTTCTTGA+GGG | 0.460635 | 2_2:-64552872 | None:intergenic |
| CATTCACCAACTCCTCCAAA+TGG | 0.461138 | 2_2:-64556821 | None:intergenic |
| ATCATGACAGAAGAAATCTT+TGG | 0.467373 | 2_2:+64555962 | Msa0264600:CDS |
| CAAAACACTGCAGAGAAGAT+TGG | 0.468898 | 2_2:+64556216 | Msa0264600:CDS |
| GCATCTCACTCCTATAACTC+TGG | 0.477082 | 2_2:+64553817 | Msa0264600:CDS |
| TTGGTATCTGAAACATCATC+CGG | 0.480961 | 2_2:+64556235 | Msa0264600:CDS |
| TGGAACTTGTTAAGATTCCA+TGG | 0.484735 | 2_2:-64556947 | None:intergenic |
| GCTTACAATTTAAACTACAT+TGG | 0.487149 | 2_2:+64556983 | Msa0264600:CDS |
| TAGGTGGAGTTAATGAAGGA+AGG | 0.488749 | 2_2:+64554578 | Msa0264600:intron |
| GCAAAGTATGGGGCTTGTGC+AGG | 0.494839 | 2_2:+64554404 | Msa0264600:CDS |
| TGCAACATTTCCAGCAGCTA+TGG | 0.497942 | 2_2:-64553490 | None:intergenic |
| AATTCCATGATGAGATTATG+AGG | 0.500503 | 2_2:-64553323 | None:intergenic |
| AAAATGGATGGCTGGTAAAG+AGG | 0.500707 | 2_2:+64553084 | Msa0264600:CDS |
| TCTTTAGGTGGAGTTAATGA+AGG | 0.502645 | 2_2:+64554574 | Msa0264600:intron |
| AATGGCATTAAGATCATTGA+AGG | 0.505160 | 2_2:+64553588 | Msa0264600:CDS |
| GCTTCCCTAAATCCTTCTTG+AGG | 0.505953 | 2_2:-64552873 | None:intergenic |
| AGGTGGAGTTAATGAAGGAA+GGG | 0.506548 | 2_2:+64554579 | Msa0264600:intron |
| TGTGGATTTGGCAAGTATCA+TGG | 0.509305 | 2_2:+64556842 | Msa0264600:CDS |
| CTAGAAGAGAAGAAGAAGTA+GGG | 0.517439 | 2_2:-64553536 | None:intergenic |
| ATGAGAAAGTATTATGGGAG+TGG | 0.517718 | 2_2:+64552763 | Msa0264600:CDS |
| GCTAGAAGAGAAGAAGAAGT+AGG | 0.519054 | 2_2:-64553537 | None:intergenic |
| TGAACCTAATGTCAAAGAAT+CGG | 0.526059 | 2_2:+64554697 | Msa0264600:CDS |
| GAAAGTGAATCAACCAGTGC+TGG | 0.531970 | 2_2:-64553857 | None:intergenic |
| GATTGTTATGTCTGCAGCAG+TGG | 0.533250 | 2_2:+64553793 | Msa0264600:CDS |
| ATTCACCAACTCCTCCAAAT+GGG | 0.535804 | 2_2:-64556820 | None:intergenic |
| TTAATTGGAGCCATAGCTGC+TGG | 0.536986 | 2_2:+64553480 | Msa0264600:CDS |
| GTGGATTTGGCAAGTATCAT+GGG | 0.538798 | 2_2:+64556843 | Msa0264600:CDS |
| ATCATTAAATACAATGCTCC+CGG | 0.543496 | 2_2:-64556254 | None:intergenic |
| TTTGGAGGAGTTGGTGAATG+TGG | 0.544032 | 2_2:+64556824 | Msa0264600:CDS |
| AAATGAGGAAGAAATCTTGA+AGG | 0.544513 | 2_2:+64552849 | Msa0264600:CDS |
| TCCTATAACTCTGGAGTTAG+GGG | 0.551937 | 2_2:+64553826 | Msa0264600:CDS |
| TAACTTTGTCAAAGAAAATG+AGG | 0.553225 | 2_2:+64552834 | Msa0264600:CDS |
| AATCTTGAAGGCCCTCAAGA+AGG | 0.558764 | 2_2:+64552861 | Msa0264600:CDS |
| GCGGATACCATCCCATTTGG+AGG | 0.558921 | 2_2:+64556809 | Msa0264600:CDS |
| TACAGTGATAATGGGAAGCA+CGG | 0.561570 | 2_2:-64555987 | None:intergenic |
| GTCATGATTGCTGATTCAAG+TGG | 0.562929 | 2_2:-64555947 | None:intergenic |
| AGTCCTAAAACCTTCAGAGT+TGG | 0.563574 | 2_2:+64553512 | Msa0264600:CDS |
| GAAGTAGGGGCCAACTCTGA+AGG | 0.570056 | 2_2:-64553522 | None:intergenic |
| TAGTCCTCATAATCTCATCA+TGG | 0.574613 | 2_2:+64553319 | Msa0264600:CDS |
| GGCTCCAATTAATGGCTCCA+AGG | 0.575676 | 2_2:-64553469 | None:intergenic |
| GTGAAAGCATAAATTGCTAG+AGG | 0.575786 | 2_2:-64556187 | None:intergenic |
| ATATTAGGAAGTGCACGAGT+GGG | 0.582326 | 2_2:+64553767 | Msa0264600:intron |
| AGTCTCTAATATTGGTGACA+TGG | 0.584206 | 2_2:+64552702 | None:intergenic |
| TTTAGGGAAGCATCATGTTG+AGG | 0.599307 | 2_2:+64552885 | Msa0264600:CDS |
| TATATTAGGAAGTGCACGAG+TGG | 0.599974 | 2_2:+64553766 | Msa0264600:intron |
| AAAGAGCTTCAGTTCCACAT+TGG | 0.608853 | 2_2:+64554463 | Msa0264600:CDS |
| ACCAACTCCTCCAAATGGGA+TGG | 0.608963 | 2_2:-64556816 | None:intergenic |
| TCATGATTGCTGATTCAAGT+GGG | 0.615088 | 2_2:-64555946 | None:intergenic |
| GGCATTAAGATCATTGAAGG+TGG | 0.617998 | 2_2:+64553591 | Msa0264600:CDS |
| ACCTAATGTCAAAGAATCGG+TGG | 0.620390 | 2_2:+64554700 | Msa0264600:CDS |
| TAGAAGAGAAGAAGAAGTAG+GGG | 0.625377 | 2_2:-64553535 | None:intergenic |
| TAGGAAGTGCACGAGTGGGG+AGG | 0.625912 | 2_2:+64553771 | Msa0264600:intron |
| GTCACCATAAAGCTGTGGCT+AGG | 0.633443 | 2_2:+64556888 | Msa0264600:CDS |
| ACAGTGATAATGGGAAGCAC+GGG | 0.640005 | 2_2:-64555986 | None:intergenic |
| TGGTATCTGAAACATCATCC+GGG | 0.645652 | 2_2:+64556236 | Msa0264600:CDS |
| TATTAGGAAGTGCACGAGTG+GGG | 0.646738 | 2_2:+64553768 | Msa0264600:intron |
| CAGGTGGAGAAGATTGAAGA+CGG | 0.650633 | 2_2:+64556136 | Msa0264600:intron |
| TTCAACTTCTTGGGACAGAG+AGG | 0.650826 | 2_2:+64553877 | Msa0264600:CDS |
| CAAATAATTTGGTAGAACAG+TGG | 0.655707 | 2_2:-64553559 | None:intergenic |
| ATGATTGCTGATTCAAGTGG+GGG | 0.665274 | 2_2:-64555944 | None:intergenic |
| CTTGAAAGTAGTGCTATTTG+GGG | 0.666143 | 2_2:-64553267 | None:intergenic |
| CCTATAACTCTGGAGTTAGG+GGG | 0.670137 | 2_2:+64553827 | Msa0264600:CDS |
| TGGTGACATGGAGTTCTCAG+TGG | 0.677211 | 2_2:+64552714 | Msa0264600:exon |
| CATGATTGCTGATTCAAGTG+GGG | 0.687119 | 2_2:-64555945 | None:intergenic |
| CTTTGACATTAGGTTCACTG+AGG | 0.691733 | 2_2:-64554691 | None:intergenic |
| ATTCAGTCACCATAAAGCTG+TGG | 0.694399 | 2_2:+64556883 | Msa0264600:CDS |
| ATTATGAGGACTAGACCAAG+AGG | 0.704548 | 2_2:-64553309 | None:intergenic |
| AACTTGTTAAGATTCCATGG+AGG | 0.758325 | 2_2:-64556944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAATAAATAAAAT+CGG | - | chr2_2:64554324-64554343 | None:intergenic | 0.0% |
| !! | TTTCAATAAACTAAATATAA+TGG | - | chr2_2:64553169-64553188 | None:intergenic | 10.0% |
| !!! | AGTTTTATTAATATAAACTA+AGG | + | chr2_2:64554172-64554191 | Msa0264600:intron | 10.0% |
| !! | TAAAAAAATAAATAAAATCG+GGG | - | chr2_2:64554322-64554341 | None:intergenic | 10.0% |
| !!! | AATAAGGTATTAAAAAAAAA+AGG | - | chr2_2:64555407-64555426 | None:intergenic | 10.0% |
| !!! | ATGTATATTTCTGTTTAATT+TGG | + | chr2_2:64552968-64552987 | Msa0264600:intron | 15.0% |
| !! | GCAAATTATATATATACATA+TGG | - | chr2_2:64553015-64553034 | None:intergenic | 15.0% |
| !!! | TATGTATATATATAATTTGC+AGG | + | chr2_2:64553015-64553034 | Msa0264600:intron | 15.0% |
| !!! | TTTAATTTCATGTAAAAGTA+TGG | - | chr2_2:64553207-64553226 | None:intergenic | 15.0% |
| !! | CCTATATTAATAAAACTTAA+TGG | - | chr2_2:64554032-64554051 | None:intergenic | 15.0% |
| !!! | CCATTAAGTTTTATTAATAT+AGG | + | chr2_2:64554029-64554048 | Msa0264600:intron | 15.0% |
| !! | ATTCCCAAATAAATATTATT+TGG | + | chr2_2:64554966-64554985 | Msa0264600:intron | 15.0% |
| !! | TGTCCAAATAATATTTATTT+GGG | - | chr2_2:64554972-64554991 | None:intergenic | 15.0% |
| !! | CAAAATCAAGAAAAAATTAA+AGG | - | chr2_2:64555068-64555087 | None:intergenic | 15.0% |
| !!! | GTTAACTACTTTTTTTTAAA+GGG | - | chr2_2:64555517-64555536 | None:intergenic | 15.0% |
| !!! | AGTTAACTACTTTTTTTTAA+AGG | - | chr2_2:64555518-64555537 | None:intergenic | 15.0% |
| !!! | AATTTATTCAAAGGTATTTT+AGG | + | chr2_2:64555645-64555664 | Msa0264600:intron | 15.0% |
| !!! | ATGATTTTTCTTTCTTTTAA+CGG | + | chr2_2:64556523-64556542 | Msa0264600:intron | 15.0% |
| !!! | AAATAGTCTTAAAAAAAACT+TGG | - | chr2_2:64556587-64556606 | None:intergenic | 15.0% |
| !!! | TATTGTTATTCTTTATTTCT+AGG | + | chr2_2:64557123-64557142 | Msa0264600:three_prime_UTR | 15.0% |
| !! | ATATATATACATATGGTCTA+TGG | - | chr2_2:64553008-64553027 | None:intergenic | 20.0% |
| !!! | TATATATATAATTTGCAGGT+TGG | + | chr2_2:64553019-64553038 | Msa0264600:intron | 20.0% |
| !!! | CTGTTAAGTTGAAAATAATA+AGG | - | chr2_2:64553238-64553257 | None:intergenic | 20.0% |
| !!! | CTTATTATTTTCAACTTAAC+AGG | + | chr2_2:64553236-64553255 | Msa0264600:intron | 20.0% |
| !! | TTGTAATGATCCAATATATT+AGG | + | chr2_2:64553752-64553771 | Msa0264600:intron | 20.0% |
| !!! | AAAGAGTTTAAATCTTTTCT+AGG | + | chr2_2:64554243-64554262 | Msa0264600:intron | 20.0% |
| !! | GTGTCCAAATAATATTTATT+TGG | - | chr2_2:64554973-64554992 | None:intergenic | 20.0% |
| !!! | TGTGACCAAATATTTTTATT+TGG | + | chr2_2:64555092-64555111 | Msa0264600:intron | 20.0% |
| !!! | GTGACCAAATATTTTTATTT+GGG | + | chr2_2:64555093-64555112 | Msa0264600:intron | 20.0% |
| !! | CAAACCCAAATAAAAATATT+TGG | - | chr2_2:64555100-64555119 | None:intergenic | 20.0% |
| !!! | TTTTTCCTCTTAAGAATTTT+AGG | + | chr2_2:64555259-64555278 | Msa0264600:intron | 20.0% |
| !!! | ATGTTTATTATTTGAAGTCA+AGG | - | chr2_2:64555315-64555334 | None:intergenic | 20.0% |
| !! | TTGATTGCTTATATATGAAA+CGG | - | chr2_2:64555482-64555501 | None:intergenic | 20.0% |
| !! | CAAAAACTCTATAATGTTTA+TGG | - | chr2_2:64555611-64555630 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTTCTTTTTCTT+TGG | - | chr2_2:64555711-64555730 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTACATAGATCT+CGG | - | chr2_2:64555770-64555789 | None:intergenic | 20.0% |
| !!! | GCTTTTGAAAACATTTTTTT+AGG | - | chr2_2:64555812-64555831 | None:intergenic | 20.0% |
| !! | ATAATCATGTAAGGAAAAAT+TGG | - | chr2_2:64555854-64555873 | None:intergenic | 20.0% |
| !! | ATCATAAAGATAATCATGTA+AGG | - | chr2_2:64555863-64555882 | None:intergenic | 20.0% |
| !! | TGAAATCTTATGTAGATTTA+TGG | + | chr2_2:64555901-64555920 | Msa0264600:intron | 20.0% |
| !! | GATTAAAAAGGACTAAAATA+AGG | - | chr2_2:64556040-64556059 | None:intergenic | 20.0% |
| !!! | TTGAAGAATACTGATTAAAA+AGG | - | chr2_2:64556052-64556071 | None:intergenic | 20.0% |
| !! | TAAACAATTGAAACTAAACT+TGG | - | chr2_2:64556112-64556131 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCAGTATATAG+CGG | + | chr2_2:64556790-64556809 | Msa0264600:intron | 20.0% |
| !!! | AAGAACATGAGAAAGTATTA+TGG | + | chr2_2:64552757-64552776 | Msa0264600:CDS | 25.0% |
| !!! | AGAACATGAGAAAGTATTAT+GGG | + | chr2_2:64552758-64552777 | Msa0264600:CDS | 25.0% |
| ! | TAACTTTGTCAAAGAAAATG+AGG | + | chr2_2:64552834-64552853 | Msa0264600:CDS | 25.0% |
| !! | GTTAAAGAAATCCATTGATT+TGG | + | chr2_2:64553045-64553064 | Msa0264600:CDS | 25.0% |
| ! | CAATAAAGTCCTTCAAAAAA+TGG | + | chr2_2:64553068-64553087 | Msa0264600:CDS | 25.0% |
| ! | AAGTTGAAAATAATAAGGCA+CGG | - | chr2_2:64553233-64553252 | None:intergenic | 25.0% |
| ! | CCATTATTGTCCAAATAATT+TGG | - | chr2_2:64553573-64553592 | None:intergenic | 25.0% |
| ! | CCAAATTATTTGGACAATAA+TGG | + | chr2_2:64553570-64553589 | Msa0264600:CDS | 25.0% |
| ! | AGAAGGTAAAAGAAATAGTA+AGG | - | chr2_2:64553678-64553697 | None:intergenic | 25.0% |
| ! | AATTGAAATGAAAAGCAAGA+AGG | - | chr2_2:64553695-64553714 | None:intergenic | 25.0% |
| ! | CAAAAGTAGCAAATTAATGA+AGG | + | chr2_2:64553971-64553990 | Msa0264600:intron | 25.0% |
| ! | CATAAAAATACCGAATTGTT+AGG | + | chr2_2:64554060-64554079 | Msa0264600:intron | 25.0% |
| ! | TAGGTAAACCAAAATGATAA+TGG | - | chr2_2:64554147-64554166 | None:intergenic | 25.0% |
| ! | ATTTCTGTTGAACAATAAGA+TGG | + | chr2_2:64554361-64554380 | Msa0264600:intron | 25.0% |
| !!! | TCCTTTGTTTTATTCTCTTT+AGG | + | chr2_2:64554559-64554578 | Msa0264600:intron | 25.0% |
| ! | ACCTAAAGAGAATAAAACAA+AGG | - | chr2_2:64554563-64554582 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTCTCTTTAGG+TGG | + | chr2_2:64554562-64554581 | Msa0264600:intron | 25.0% |
| ! | GAAGGGATTAAAAAAATGTT+TGG | + | chr2_2:64554596-64554615 | Msa0264600:CDS | 25.0% |
| ! | ATTTCTCATTTAGTCATTCT+TGG | - | chr2_2:64555155-64555174 | None:intergenic | 25.0% |
| ! | TGTAATAGAAAGAAGAAAGA+AGG | - | chr2_2:64555441-64555460 | None:intergenic | 25.0% |
| ! | TGATTGCTTATATATGAAAC+GGG | - | chr2_2:64555481-64555500 | None:intergenic | 25.0% |
| !! | GGAAAATTGTACATTTTACA+AGG | - | chr2_2:64555747-64555766 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTACATAGATCTC+GGG | - | chr2_2:64555769-64555788 | None:intergenic | 25.0% |
| ! | ACTTATCTTACAGTGATAAT+GGG | - | chr2_2:64555998-64556017 | None:intergenic | 25.0% |
| ! | TACTTATCTTACAGTGATAA+TGG | - | chr2_2:64555999-64556018 | None:intergenic | 25.0% |
| ! | AACTAAACTTGGTTAACATT+TGG | - | chr2_2:64556101-64556120 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGTTTATTTGC+AGG | + | chr2_2:64556117-64556136 | Msa0264600:intron | 25.0% |
| ! | ATTTAATGATGCAATTCTAC+AGG | + | chr2_2:64556267-64556286 | Msa0264600:CDS | 25.0% |
| ! | CATAGTAGTGAAAATATGTT+AGG | - | chr2_2:64556339-64556358 | None:intergenic | 25.0% |
| ! | TCTAACCGTATATAAATAGT+CGG | - | chr2_2:64556494-64556513 | None:intergenic | 25.0% |
| !! | TTTTCACAATAAGATAGTGA+GGG | - | chr2_2:64556661-64556680 | None:intergenic | 25.0% |
| ! | GGTGTTCTTGATAAAATTAA+CGG | - | chr2_2:64556741-64556760 | None:intergenic | 25.0% |
| !! | ATTTTATCAAGAACACCAAT+TGG | + | chr2_2:64556744-64556763 | Msa0264600:intron | 25.0% |
| ! | ATTATCTTTCATATGCCAAT+TGG | - | chr2_2:64556762-64556781 | None:intergenic | 25.0% |
| ! | GCTTACAATTTAAACTACAT+TGG | + | chr2_2:64556983-64557002 | Msa0264600:CDS | 25.0% |
| ! | TTCAAAACGTTCATTATATG+AGG | + | chr2_2:64557036-64557055 | Msa0264600:CDS | 25.0% |
| ! | TGGATGATAGTTGTAAAAAT+AGG | - | chr2_2:64557088-64557107 | None:intergenic | 25.0% |
| ! | TTTACAACTATCATCCAATA+AGG | + | chr2_2:64557091-64557110 | Msa0264600:three_prime_UTR | 25.0% |
| !! | GAAAAACAAAAGAAGCATCA+TGG | + | chr2_2:64552785-64552804 | Msa0264600:CDS | 30.0% |
| AAATGAGGAAGAAATCTTGA+AGG | + | chr2_2:64552849-64552868 | Msa0264600:CDS | 30.0% | |
| AAAGTCCTTCAAAAAATGGA+TGG | + | chr2_2:64553072-64553091 | Msa0264600:CDS | 30.0% | |
| !! | ACTTGAAAGTAGTGCTATTT+GGG | - | chr2_2:64553271-64553290 | None:intergenic | 30.0% |
| AATTCCATGATGAGATTATG+AGG | - | chr2_2:64553326-64553345 | None:intergenic | 30.0% | |
| ! | TCATCATGGAATTTTCCATT+TGG | + | chr2_2:64553333-64553352 | Msa0264600:CDS | 30.0% |
| ! | TCCATTTGGTGAGTAAAATA+TGG | + | chr2_2:64553347-64553366 | Msa0264600:intron | 30.0% |
| !! | TTTCTCTTGGTTTTTGTAAC+AGG | + | chr2_2:64553441-64553460 | Msa0264600:intron | 30.0% |
| CAAATAATTTGGTAGAACAG+TGG | - | chr2_2:64553562-64553581 | None:intergenic | 30.0% | |
| CACTGTTCTACCAAATTATT+TGG | + | chr2_2:64553560-64553579 | Msa0264600:CDS | 30.0% | |
| AATGGCATTAAGATCATTGA+AGG | + | chr2_2:64553588-64553607 | Msa0264600:CDS | 30.0% | |
| AGCAACTCCTACATAAAAAA+TGG | + | chr2_2:64553628-64553647 | Msa0264600:CDS | 30.0% | |
| GCAACTCCTACATAAAAAAT+GGG | + | chr2_2:64553629-64553648 | Msa0264600:CDS | 30.0% | |
| !!! | TCTTGTCCCATTTTTTATGT+AGG | - | chr2_2:64553638-64553657 | None:intergenic | 30.0% |
| TTGATTCACTTTCAACTTCT+TGG | + | chr2_2:64553867-64553886 | Msa0264600:CDS | 30.0% | |
| TGATTCACTTTCAACTTCTT+GGG | + | chr2_2:64553868-64553887 | Msa0264600:CDS | 30.0% | |
| GTTCATTTAATCTTCTCACA+TGG | + | chr2_2:64553905-64553924 | Msa0264600:intron | 30.0% | |
| ATGTACCTTCTATTGTAGAA+AGG | + | chr2_2:64553929-64553948 | Msa0264600:intron | 30.0% | |
| !! | ACCAAAATGATAATGGTCAT+CGG | - | chr2_2:64554140-64554159 | None:intergenic | 30.0% |
| !!! | CAATGCTGTTGGATTTTTTT+GGG | - | chr2_2:64554628-64554647 | None:intergenic | 30.0% |
| TGAACCTAATGTCAAAGAAT+CGG | + | chr2_2:64554697-64554716 | Msa0264600:CDS | 30.0% | |
| !!! | TCGACGAAGTTTTAAATTCA+CGG | + | chr2_2:64554794-64554813 | Msa0264600:intron | 30.0% |
| TTAACCTGAAAAGTCTTTCA+TGG | + | chr2_2:64554939-64554958 | Msa0264600:intron | 30.0% | |
| !! | TCCTCTTAAGAATTTTAGGA+TGG | + | chr2_2:64555263-64555282 | Msa0264600:intron | 30.0% |
| ACCATCCTAAAATTCTTAAG+AGG | - | chr2_2:64555267-64555286 | None:intergenic | 30.0% | |
| CAAGGTGAAAACATGAAATA+TGG | - | chr2_2:64555297-64555316 | None:intergenic | 30.0% | |
| AGGAATGATAGCATTAACTA+TGG | + | chr2_2:64555665-64555684 | Msa0264600:intron | 30.0% | |
| !!! | TTTTTTGTACATAGATCTCG+GGG | - | chr2_2:64555768-64555787 | None:intergenic | 30.0% |
| !! | AGGAAAAATTGGTCTCTTTT+AGG | - | chr2_2:64555843-64555862 | None:intergenic | 30.0% |
| TATGGAACCAACAATATTAC+TGG | + | chr2_2:64555919-64555938 | Msa0264600:CDS | 30.0% | |
| ATCATGACAGAAGAAATCTT+TGG | + | chr2_2:64555962-64555981 | Msa0264600:CDS | 30.0% | |
| !! | AGTATTCTTCAAAAGTGTCA+AGG | + | chr2_2:64556060-64556079 | Msa0264600:intron | 30.0% |
| TTCAATTGTTTATTTGCAGG+TGG | + | chr2_2:64556120-64556139 | Msa0264600:intron | 30.0% | |
| ATCATTAAATACAATGCTCC+CGG | - | chr2_2:64556257-64556276 | None:intergenic | 30.0% | |
| TGTAGCCGACTATTTATATA+CGG | + | chr2_2:64556486-64556505 | Msa0264600:intron | 30.0% | |
| ! | CTTTTCACAATAAGATAGTG+AGG | - | chr2_2:64556662-64556681 | None:intergenic | 30.0% |
| !!! | GAAGTTACTACACTGATTTT+TGG | + | chr2_2:64556912-64556931 | Msa0264600:CDS | 30.0% |
| !!! | GGAATACTTCTTGTTTTACT+CGG | + | chr2_2:64557004-64557023 | Msa0264600:CDS | 30.0% |
| CAATAATCAGCTATCCTTAT+TGG | - | chr2_2:64557108-64557127 | None:intergenic | 30.0% | |
| ! | AAAAGCACACATTAGAATCT+TGG | - | chr2_2:64557168-64557187 | None:intergenic | 30.0% |
| !! | ATGAGAAAGTATTATGGGAG+TGG | + | chr2_2:64552763-64552782 | Msa0264600:CDS | 35.0% |
| TGGAGAGAATCACAACTAAA+AGG | + | chr2_2:64552805-64552824 | Msa0264600:CDS | 35.0% | |
| GGACTTTATTGCCAAATCAA+TGG | - | chr2_2:64553059-64553078 | None:intergenic | 35.0% | |
| !! | CTTGAAAGTAGTGCTATTTG+GGG | - | chr2_2:64553270-64553289 | None:intergenic | 35.0% |
| ! | CACTTGAAAGTAGTGCTATT+TGG | - | chr2_2:64553272-64553291 | None:intergenic | 35.0% |
| TAGTCCTCATAATCTCATCA+TGG | + | chr2_2:64553319-64553338 | Msa0264600:CDS | 35.0% | |
| ! | GCCATATTTTACTCACCAAA+TGG | - | chr2_2:64553351-64553370 | None:intergenic | 35.0% |
| GTTCAAAGTTGTGTTTCTCT+TGG | + | chr2_2:64553428-64553447 | Msa0264600:intron | 35.0% | |
| TAGAAGAGAAGAAGAAGTAG+GGG | - | chr2_2:64553538-64553557 | None:intergenic | 35.0% | |
| CTAGAAGAGAAGAAGAAGTA+GGG | - | chr2_2:64553539-64553558 | None:intergenic | 35.0% | |
| ! | TGGGACAAGATATTTTTCAC+TGG | + | chr2_2:64553648-64553667 | Msa0264600:CDS | 35.0% |
| TCGTGCACTTCCTAATATAT+TGG | - | chr2_2:64553765-64553784 | None:intergenic | 35.0% | |
| CATTGCCTTTCTACAATAGA+AGG | - | chr2_2:64553937-64553956 | None:intergenic | 35.0% | |
| TCTATTGTAGAAAGGCAATG+TGG | + | chr2_2:64553937-64553956 | Msa0264600:intron | 35.0% | |
| ! | ATGAGTTGGGATTCAATCAA+CGG | - | chr2_2:64554099-64554118 | None:intergenic | 35.0% |
| ! | TCCGATGACCATTATCATTT+TGG | + | chr2_2:64554136-64554155 | Msa0264600:intron | 35.0% |
| GTCCACAATGACTATATGTT+AGG | + | chr2_2:64554196-64554215 | Msa0264600:intron | 35.0% | |
| CTCCTAACATATAGTCATTG+TGG | - | chr2_2:64554201-64554220 | None:intergenic | 35.0% | |
| TAGGACATTCGCAAAATGAT+CGG | + | chr2_2:64554262-64554281 | Msa0264600:intron | 35.0% | |
| !! | GAATTTTGGTGGCAAAGTAT+GGG | + | chr2_2:64554393-64554412 | Msa0264600:CDS | 35.0% |
| !! | AATTTTGGTGGCAAAGTATG+GGG | + | chr2_2:64554394-64554413 | Msa0264600:CDS | 35.0% |
| ! | AACTGAAGCTCTTTTCTACA+AGG | - | chr2_2:64554457-64554476 | None:intergenic | 35.0% |
| !!! | TTTCCTGCTTTTTACCAATG+TGG | - | chr2_2:64554480-64554499 | None:intergenic | 35.0% |
| TCTTTAGGTGGAGTTAATGA+AGG | + | chr2_2:64554574-64554593 | Msa0264600:intron | 35.0% | |
| !!! | GCAATGCTGTTGGATTTTTT+TGG | - | chr2_2:64554629-64554648 | None:intergenic | 35.0% |
| AAAAATCCAACAGCATTGCA+AGG | + | chr2_2:64554630-64554649 | Msa0264600:CDS | 35.0% | |
| TTCTTGGATAAGTCAATTCG+AGG | - | chr2_2:64555139-64555158 | None:intergenic | 35.0% | |
| TGCTTATATATGAAACGGGA+GGG | - | chr2_2:64555477-64555496 | None:intergenic | 35.0% | |
| TTGCTTATATATGAAACGGG+AGG | - | chr2_2:64555478-64555497 | None:intergenic | 35.0% | |
| TGTTTATGGAACAAGTTCTC+AGG | - | chr2_2:64555597-64555616 | None:intergenic | 35.0% | |
| !!! | TGGTCTCTTTTAGGTTCATT+TGG | - | chr2_2:64555834-64555853 | None:intergenic | 35.0% |
| !! | TCATGATTGCTGATTCAAGT+GGG | - | chr2_2:64555949-64555968 | None:intergenic | 35.0% |
| GCATAAATTGCTAGAGGTTT+AGG | - | chr2_2:64556184-64556203 | None:intergenic | 35.0% | |
| ! | GTGAAAGCATAAATTGCTAG+AGG | - | chr2_2:64556190-64556209 | None:intergenic | 35.0% |
| ! | TTGGTATCTGAAACATCATC+CGG | + | chr2_2:64556235-64556254 | Msa0264600:CDS | 35.0% |
| TCACTACTATGAAACCAGTA+AGG | + | chr2_2:64556348-64556367 | Msa0264600:intron | 35.0% | |
| CTTGCAAAACAAAACCTTAC+TGG | - | chr2_2:64556365-64556384 | None:intergenic | 35.0% | |
| AGAGAAGTTAAGTGGAAGTT+TGG | - | chr2_2:64556391-64556410 | None:intergenic | 35.0% | |
| !!! | ACTACACTGATTTTTGGTTC+AGG | + | chr2_2:64556918-64556937 | Msa0264600:CDS | 35.0% |
| !! | AACTTGTTAAGATTCCATGG+AGG | - | chr2_2:64556947-64556966 | None:intergenic | 35.0% |
| !! | TGGAACTTGTTAAGATTCCA+TGG | - | chr2_2:64556950-64556969 | None:intergenic | 35.0% |
| TGTAAGCTTCTTCAAGTAGT+TGG | - | chr2_2:64556970-64556989 | None:intergenic | 35.0% | |
| CTTCCCTAAATCCTTCTTGA+GGG | - | chr2_2:64552875-64552894 | None:intergenic | 40.0% | |
| !! | TTTAGGGAAGCATCATGTTG+AGG | + | chr2_2:64552885-64552904 | Msa0264600:CDS | 40.0% |
| !! | TGTTGAGGCTTTTAGAGATG+AGG | + | chr2_2:64552900-64552919 | Msa0264600:CDS | 40.0% |
| TCCTTCAAAAAATGGATGGC+TGG | + | chr2_2:64553076-64553095 | Msa0264600:CDS | 40.0% | |
| !!! | ACCAGCCATCCATTTTTTGA+AGG | - | chr2_2:64553080-64553099 | None:intergenic | 40.0% |
| AAAATGGATGGCTGGTAAAG+AGG | + | chr2_2:64553084-64553103 | Msa0264600:CDS | 40.0% | |
| ATTATGAGGACTAGACCAAG+AGG | - | chr2_2:64553312-64553331 | None:intergenic | 40.0% | |
| !!! | TTTTGTAACAGGAGTGTCCT+TGG | + | chr2_2:64553452-64553471 | Msa0264600:intron | 40.0% |
| AGTCCTAAAACCTTCAGAGT+TGG | + | chr2_2:64553512-64553531 | Msa0264600:CDS | 40.0% | |
| GCTAGAAGAGAAGAAGAAGT+AGG | - | chr2_2:64553540-64553559 | None:intergenic | 40.0% | |
| GGCATTAAGATCATTGAAGG+TGG | + | chr2_2:64553591-64553610 | Msa0264600:CDS | 40.0% | |
| ATTGAAGGTGGACCAGAAAT+TGG | + | chr2_2:64553603-64553622 | Msa0264600:CDS | 40.0% | |
| ! | TATATTAGGAAGTGCACGAG+TGG | + | chr2_2:64553766-64553785 | Msa0264600:intron | 40.0% |
| ! | ATATTAGGAAGTGCACGAGT+GGG | + | chr2_2:64553767-64553786 | Msa0264600:intron | 40.0% |
| !! | ACTCCTATAACTCTGGAGTT+AGG | + | chr2_2:64553824-64553843 | Msa0264600:CDS | 40.0% |
| !! | CTCCTATAACTCTGGAGTTA+GGG | + | chr2_2:64553825-64553844 | Msa0264600:CDS | 40.0% |
| !! | TCCTATAACTCTGGAGTTAG+GGG | + | chr2_2:64553826-64553845 | Msa0264600:CDS | 40.0% |
| TGTAGAAAGGCAATGTGGAA+TGG | + | chr2_2:64553942-64553961 | Msa0264600:intron | 40.0% | |
| TGGGATTCAATCAACGGTTA+CGG | - | chr2_2:64554093-64554112 | None:intergenic | 40.0% | |
| CACAGACTAGTGAATGAGTT+GGG | - | chr2_2:64554112-64554131 | None:intergenic | 40.0% | |
| TCACAGACTAGTGAATGAGT+TGG | - | chr2_2:64554113-64554132 | None:intergenic | 40.0% | |
| ! | GATGGCTGTGAAACGAATTT+TGG | + | chr2_2:64554379-64554398 | Msa0264600:intron | 40.0% |
| !! | CGAATTTTGGTGGCAAAGTA+TGG | + | chr2_2:64554392-64554411 | Msa0264600:CDS | 40.0% |
| AAAGAGCTTCAGTTCCACAT+TGG | + | chr2_2:64554463-64554482 | Msa0264600:CDS | 40.0% | |
| GTTCCACATTGGTAAAAAGC+AGG | + | chr2_2:64554474-64554493 | Msa0264600:intron | 40.0% | |
| TAGGTGGAGTTAATGAAGGA+AGG | + | chr2_2:64554578-64554597 | Msa0264600:intron | 40.0% | |
| AGGTGGAGTTAATGAAGGAA+GGG | + | chr2_2:64554579-64554598 | Msa0264600:intron | 40.0% | |
| AACAATCCTTGCAATGCTGT+TGG | - | chr2_2:64554639-64554658 | None:intergenic | 40.0% | |
| GAGGAGACTCTTGATTCTAT+TGG | - | chr2_2:64554675-64554694 | None:intergenic | 40.0% | |
| CTTTGACATTAGGTTCACTG+AGG | - | chr2_2:64554694-64554713 | None:intergenic | 40.0% | |
| ACCTAATGTCAAAGAATCGG+TGG | + | chr2_2:64554700-64554719 | Msa0264600:CDS | 40.0% | |
| !! | ACCACCGATTCTTTGACATT+AGG | - | chr2_2:64554704-64554723 | None:intergenic | 40.0% |
| ! | GTCAAAGAATCGGTGGTTTT+TGG | + | chr2_2:64554707-64554726 | Msa0264600:CDS | 40.0% |
| !! | AAAGAATCGGTGGTTTTTGG+TGG | + | chr2_2:64554710-64554729 | Msa0264600:CDS | 40.0% |
| ! | GTGTCCATGAAAGACTTTTC+AGG | - | chr2_2:64554946-64554965 | None:intergenic | 40.0% |
| AAGTCAATTCGAGGCACAAT+TGG | - | chr2_2:64555130-64555149 | None:intergenic | 40.0% | |
| GAAGGCGAGCTATAGAAATA+AGG | - | chr2_2:64555423-64555442 | None:intergenic | 40.0% | |
| TATGGAACAAGTTCTCAGGA+GGG | - | chr2_2:64555593-64555612 | None:intergenic | 40.0% | |
| TTATGGAACAAGTTCTCAGG+AGG | - | chr2_2:64555594-64555613 | None:intergenic | 40.0% | |
| !! | ATGATTGCTGATTCAAGTGG+GGG | - | chr2_2:64555947-64555966 | None:intergenic | 40.0% |
| !! | CATGATTGCTGATTCAAGTG+GGG | - | chr2_2:64555948-64555967 | None:intergenic | 40.0% |
| !! | GTCATGATTGCTGATTCAAG+TGG | - | chr2_2:64555950-64555969 | None:intergenic | 40.0% |
| !! | TACAGTGATAATGGGAAGCA+CGG | - | chr2_2:64555990-64556009 | None:intergenic | 40.0% |
| CAAAACACTGCAGAGAAGAT+TGG | + | chr2_2:64556216-64556235 | Msa0264600:CDS | 40.0% | |
| ! | TGGTATCTGAAACATCATCC+GGG | + | chr2_2:64556236-64556255 | Msa0264600:CDS | 40.0% |
| AGCTTGAGAGAGAAGTTAAG+TGG | - | chr2_2:64556399-64556418 | None:intergenic | 40.0% | |
| AGTCGGCTACATCATAAAAC+AGG | - | chr2_2:64556477-64556496 | None:intergenic | 40.0% | |
| GCATCGTAAGTCGATTGTAT+AGG | + | chr2_2:64556559-64556578 | Msa0264600:intron | 40.0% | |
| ATTCACCAACTCCTCCAAAT+GGG | - | chr2_2:64556823-64556842 | None:intergenic | 40.0% | |
| TGTGGATTTGGCAAGTATCA+TGG | + | chr2_2:64556842-64556861 | Msa0264600:CDS | 40.0% | |
| GTGGATTTGGCAAGTATCAT+GGG | + | chr2_2:64556843-64556862 | Msa0264600:CDS | 40.0% | |
| ATTCAGTCACCATAAAGCTG+TGG | + | chr2_2:64556883-64556902 | Msa0264600:CDS | 40.0% | |
| AATCTTGAAGGCCCTCAAGA+AGG | + | chr2_2:64552861-64552880 | Msa0264600:CDS | 45.0% | |
| AAGGCCCTCAAGAAGGATTT+AGG | + | chr2_2:64552868-64552887 | Msa0264600:CDS | 45.0% | |
| AGGCCCTCAAGAAGGATTTA+GGG | + | chr2_2:64552869-64552888 | Msa0264600:CDS | 45.0% | |
| GCTTCCCTAAATCCTTCTTG+AGG | - | chr2_2:64552876-64552895 | None:intergenic | 45.0% | |
| GAAATTGTTGCTGAGCCTCT+TGG | + | chr2_2:64553294-64553313 | Msa0264600:CDS | 45.0% | |
| GTGTCCTTGGAGCCATTAAT+TGG | + | chr2_2:64553465-64553484 | Msa0264600:CDS | 45.0% | |
| GCAGCTATGGCTCCAATTAA+TGG | - | chr2_2:64553480-64553499 | None:intergenic | 45.0% | |
| TTAATTGGAGCCATAGCTGC+TGG | + | chr2_2:64553480-64553499 | Msa0264600:CDS | 45.0% | |
| TGCAACATTTCCAGCAGCTA+TGG | - | chr2_2:64553493-64553512 | None:intergenic | 45.0% | |
| AGGAGTTGCTCTCCAATTTC+TGG | - | chr2_2:64553618-64553637 | None:intergenic | 45.0% | |
| ! | TATTAGGAAGTGCACGAGTG+GGG | + | chr2_2:64553768-64553787 | Msa0264600:intron | 45.0% |
| GATTGTTATGTCTGCAGCAG+TGG | + | chr2_2:64553793-64553812 | Msa0264600:CDS | 45.0% | |
| GCATCTCACTCCTATAACTC+TGG | + | chr2_2:64553817-64553836 | Msa0264600:CDS | 45.0% | |
| !! | CCTATAACTCTGGAGTTAGG+GGG | + | chr2_2:64553827-64553846 | Msa0264600:CDS | 45.0% |
| GAAAGTGAATCAACCAGTGC+TGG | - | chr2_2:64553860-64553879 | None:intergenic | 45.0% | |
| TTCAACTTCTTGGGACAGAG+AGG | + | chr2_2:64553877-64553896 | Msa0264600:CDS | 45.0% | |
| CGGTGTGCAACCTAACAATT+CGG | - | chr2_2:64554073-64554092 | None:intergenic | 45.0% | |
| ! | GGCTGTGAAACGAATTTTGG+TGG | + | chr2_2:64554382-64554401 | Msa0264600:CDS | 45.0% |
| CAATTCGAGGCACAATTGGT+TGG | - | chr2_2:64555126-64555145 | None:intergenic | 45.0% | |
| ! | AGTTCTCAGGAGGGATGTTT+TGG | - | chr2_2:64555584-64555603 | None:intergenic | 45.0% |
| GGGGGATCCAGTAATATTGT+TGG | - | chr2_2:64555929-64555948 | None:intergenic | 45.0% | |
| !! | ACAGTGATAATGGGAAGCAC+GGG | - | chr2_2:64555989-64556008 | None:intergenic | 45.0% |
| CAGGTGGAGAAGATTGAAGA+CGG | + | chr2_2:64556136-64556155 | Msa0264600:intron | 45.0% | |
| !! | ATAGCGGATACCATCCCATT+TGG | + | chr2_2:64556806-64556825 | Msa0264600:CDS | 45.0% |
| CATTCACCAACTCCTCCAAA+TGG | - | chr2_2:64556824-64556843 | None:intergenic | 45.0% | |
| !! | TTTGGAGGAGTTGGTGAATG+TGG | + | chr2_2:64556824-64556843 | Msa0264600:CDS | 45.0% |
| !! | GGAGTTGGTGAATGTGGATT+TGG | + | chr2_2:64556830-64556849 | Msa0264600:CDS | 45.0% |
| TTCTCCTAGCCACAGCTTTA+TGG | - | chr2_2:64556895-64556914 | None:intergenic | 45.0% | |
| ! | TTTGGTTCAGGTTTCCTCCA+TGG | + | chr2_2:64556930-64556949 | Msa0264600:CDS | 45.0% |
| !!! | ATATTAATAAAACTTTTTTT+AGG | - | chr2_2:64554166-64554185 | None:intergenic | 5.0% |
| !! | TTAAAAAAATAAATAAAATC+GGG | - | chr2_2:64554323-64554342 | None:intergenic | 5.0% |
| !! | TAAAATTTAAATTTATTCAA+AGG | + | chr2_2:64555636-64555655 | Msa0264600:intron | 5.0% |
| TGGTGACATGGAGTTCTCAG+TGG | + | chr2_2:64552714-64552733 | Msa0264600:exon | 50.0% | |
| GGAGTTCTCAGTGGAAGCTT+TGG | + | chr2_2:64552723-64552742 | Msa0264600:CDS | 50.0% | |
| GGCTCCAATTAATGGCTCCA+AGG | - | chr2_2:64553472-64553491 | None:intergenic | 50.0% | |
| !! | GGGCCAACTCTGAAGGTTTT+AGG | - | chr2_2:64553518-64553537 | None:intergenic | 50.0% |
| CCCCCTAACTCCAGAGTTAT+AGG | - | chr2_2:64553830-64553849 | None:intergenic | 50.0% | |
| ACCATCCCATTTGGAGGAGT+TGG | + | chr2_2:64556815-64556834 | Msa0264600:CDS | 50.0% | |
| ACCAACTCCTCCAAATGGGA+TGG | - | chr2_2:64556819-64556838 | None:intergenic | 50.0% | |
| GTCACCATAAAGCTGTGGCT+AGG | + | chr2_2:64556888-64556907 | Msa0264600:CDS | 50.0% | |
| GAAGTAGGGGCCAACTCTGA+AGG | - | chr2_2:64553525-64553544 | None:intergenic | 55.0% | |
| AGGGGGAAAATGTCCAGCAC+TGG | + | chr2_2:64553844-64553863 | Msa0264600:CDS | 55.0% | |
| GCAAAGTATGGGGCTTGTGC+AGG | + | chr2_2:64554404-64554423 | Msa0264600:CDS | 55.0% | |
| GCGGATACCATCCCATTTGG+AGG | + | chr2_2:64556809-64556828 | Msa0264600:CDS | 55.0% | |
| ! | TAGGAAGTGCACGAGTGGGG+AGG | + | chr2_2:64553771-64553790 | Msa0264600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64552708 | 64557209 | 64552708 | ID=Msa0264600;Name=Msa0264600 |
| chr2_2 | mRNA | 64552708 | 64557209 | 64552708 | ID=Msa0264600-mRNA-1;Parent=Msa0264600;Name=Msa0264600-mRNA-1;_AED=0.14;_eAED=0.14;_QI=13|1|1|1|1|1|10|140|494 |
| chr2_2 | exon | 64552708 | 64552921 | 64552708 | ID=Msa0264600-mRNA-1:exon:20151;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64553037 | 64553105 | 64553037 | ID=Msa0264600-mRNA-1:exon:20152;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64553258 | 64553354 | 64553258 | ID=Msa0264600-mRNA-1:exon:20153;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64553463 | 64553669 | 64553463 | ID=Msa0264600-mRNA-1:exon:20154;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64553774 | 64553898 | 64553774 | ID=Msa0264600-mRNA-1:exon:20155;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64554380 | 64554484 | 64554380 | ID=Msa0264600-mRNA-1:exon:20156;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64554581 | 64554753 | 64554581 | ID=Msa0264600-mRNA-1:exon:20157;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64555916 | 64556006 | 64555916 | ID=Msa0264600-mRNA-1:exon:20158;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64556139 | 64556288 | 64556139 | ID=Msa0264600-mRNA-1:exon:20159;Parent=Msa0264600-mRNA-1 |
| chr2_2 | exon | 64556803 | 64557209 | 64556803 | ID=Msa0264600-mRNA-1:exon:20160;Parent=Msa0264600-mRNA-1 |
| chr2_2 | five_prime_UTR | 64552708 | 64552720 | 64552708 | ID=Msa0264600-mRNA-1:five_prime_utr;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64552721 | 64552921 | 64552721 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64553037 | 64553105 | 64553037 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64553258 | 64553354 | 64553258 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64553463 | 64553669 | 64553463 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64553774 | 64553898 | 64553774 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64554380 | 64554484 | 64554380 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64554581 | 64554753 | 64554581 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64555916 | 64556006 | 64555916 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64556139 | 64556288 | 64556139 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | CDS | 64556803 | 64557069 | 64556803 | ID=Msa0264600-mRNA-1:cds;Parent=Msa0264600-mRNA-1 |
| chr2_2 | three_prime_UTR | 64557070 | 64557209 | 64557070 | ID=Msa0264600-mRNA-1:three_prime_utr;Parent=Msa0264600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
