Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295010 | XP_003597427.2 | 97.166 | 494 | 14 | 0 | 1 | 494 | 1 | 494 | 0.0 | 986 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295010 | sp|Q70E96|AL3F1_ARATH | 53.002 | 483 | 227 | 0 | 1 | 483 | 1 | 483 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295010 | G7IUB3 | 97.166 | 494 | 14 | 0 | 1 | 494 | 13 | 506 | 0.0 | 986 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223480 | Msa0295010 | 0.968384 | 1.335019e-128 | -8.615850e-47 |
| Msa0264600 | Msa0295010 | 0.896765 | 2.694844e-76 | -8.615850e-47 |
| Msa0295010 | Msa0339990 | 0.894503 | 2.319024e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295010 | MtrunA17_Chr2g0328781 | 97.166 | 494 | 14 | 0 | 1 | 494 | 13 | 506 | 0.0 | 986 |
| Msa0295010 | MtrunA17_Chr4g0032441 | 71.855 | 469 | 131 | 1 | 5 | 472 | 1 | 469 | 0.0 | 673 |
| Msa0295010 | MtrunA17_Chr8g0372381 | 56.667 | 480 | 201 | 2 | 8 | 483 | 9 | 485 | 0.0 | 580 |
| Msa0295010 | MtrunA17_Chr8g0384741 | 47.660 | 470 | 243 | 1 | 12 | 481 | 73 | 539 | 1.19e-158 | 461 |
| Msa0295010 | MtrunA17_Chr3g0124811 | 46.138 | 479 | 255 | 1 | 3 | 481 | 13 | 488 | 4.34e-158 | 458 |
| Msa0295010 | MtrunA17_Chr1g0159811 | 47.711 | 415 | 214 | 1 | 3 | 417 | 11 | 422 | 1.14e-135 | 401 |
| Msa0295010 | MtrunA17_Chr3g0129271 | 56.545 | 191 | 83 | 0 | 175 | 365 | 31 | 221 | 3.38e-71 | 227 |
| Msa0295010 | MtrunA17_Chr2g0294411 | 26.608 | 451 | 300 | 10 | 23 | 453 | 96 | 535 | 2.14e-40 | 153 |
| Msa0295010 | MtrunA17_Chr2g0310091 | 29.060 | 351 | 237 | 9 | 104 | 448 | 193 | 537 | 3.01e-40 | 152 |
| Msa0295010 | MtrunA17_Chr4g0009161 | 62.857 | 105 | 38 | 1 | 175 | 278 | 116 | 220 | 5.70e-35 | 130 |
| Msa0295010 | MtrunA17_Chr3g0118081 | 26.804 | 485 | 293 | 13 | 1 | 454 | 77 | 530 | 3.44e-33 | 132 |
| Msa0295010 | MtrunA17_Chr4g0059521 | 28.698 | 453 | 290 | 14 | 23 | 454 | 60 | 500 | 7.16e-33 | 130 |
| Msa0295010 | MtrunA17_Chr3g0118121 | 27.101 | 476 | 303 | 15 | 1 | 454 | 47 | 500 | 1.69e-32 | 129 |
| Msa0295010 | MtrunA17_Chr4g0059221 | 27.655 | 452 | 300 | 14 | 2 | 440 | 97 | 534 | 9.42e-30 | 122 |
| Msa0295010 | MtrunA17_Chr6g0485301 | 29.817 | 436 | 260 | 18 | 39 | 456 | 94 | 501 | 1.24e-29 | 121 |
| Msa0295010 | MtrunA17_Chr8g0365221 | 27.902 | 448 | 296 | 14 | 6 | 440 | 98 | 531 | 1.94e-28 | 118 |
| Msa0295010 | MtrunA17_Chr8g0390651 | 27.044 | 477 | 296 | 16 | 2 | 456 | 56 | 502 | 4.65e-28 | 117 |
| Msa0295010 | MtrunA17_Chr8g0390631 | 27.840 | 449 | 270 | 19 | 30 | 456 | 77 | 493 | 5.19e-27 | 114 |
| Msa0295010 | MtrunA17_Chr3g0117861 | 26.339 | 448 | 303 | 13 | 6 | 440 | 99 | 532 | 1.10e-26 | 113 |
| Msa0295010 | MtrunA17_Chr6g0485311 | 27.962 | 422 | 271 | 16 | 39 | 445 | 92 | 495 | 5.76e-26 | 110 |
| Msa0295010 | MtrunA17_Chr4g0074171 | 26.966 | 445 | 281 | 15 | 2 | 423 | 44 | 467 | 1.74e-25 | 109 |
| Msa0295010 | MtrunA17_Chr1g0149961 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 1.27e-24 | 106 |
| Msa0295010 | MtrunA17_Chr2g0300801 | 26.062 | 353 | 240 | 9 | 105 | 447 | 152 | 493 | 2.79e-19 | 90.5 |
| Msa0295010 | MtrunA17_Chr2g0279751 | 27.097 | 310 | 204 | 10 | 105 | 401 | 147 | 447 | 1.45e-17 | 85.5 |
| Msa0295010 | MtrunA17_Chr4g0049641 | 26.774 | 310 | 205 | 10 | 105 | 401 | 174 | 474 | 3.83e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295010 | AT4G36250.1 | 53.002 | 483 | 227 | 0 | 1 | 483 | 1 | 483 | 0.0 | 566 |
| Msa0295010 | AT1G44170.1 | 48.408 | 471 | 240 | 1 | 12 | 482 | 16 | 483 | 7.39e-163 | 470 |
| Msa0295010 | AT1G44170.2 | 48.408 | 471 | 240 | 1 | 12 | 482 | 16 | 483 | 7.39e-163 | 470 |
| Msa0295010 | AT4G34240.4 | 49.682 | 471 | 234 | 1 | 12 | 482 | 64 | 531 | 2.30e-158 | 461 |
| Msa0295010 | AT4G34240.1 | 49.682 | 471 | 234 | 1 | 12 | 482 | 79 | 546 | 6.13e-158 | 460 |
| Msa0295010 | AT1G44170.3 | 50.000 | 418 | 206 | 1 | 65 | 482 | 6 | 420 | 1.48e-149 | 434 |
| Msa0295010 | AT4G34240.3 | 51.724 | 406 | 193 | 1 | 77 | 482 | 2 | 404 | 4.00e-142 | 414 |
| Msa0295010 | AT4G34240.2 | 49.524 | 315 | 156 | 1 | 12 | 326 | 79 | 390 | 1.91e-97 | 300 |
| Msa0295010 | AT3G66658.2 | 27.406 | 478 | 312 | 11 | 23 | 471 | 96 | 567 | 7.16e-47 | 172 |
| Msa0295010 | AT3G66658.1 | 27.477 | 444 | 296 | 9 | 23 | 446 | 96 | 533 | 4.62e-46 | 169 |
| Msa0295010 | AT1G79440.1 | 30.460 | 348 | 222 | 9 | 104 | 441 | 184 | 521 | 5.59e-41 | 154 |
| Msa0295010 | AT1G74920.2 | 29.680 | 438 | 284 | 14 | 30 | 454 | 69 | 495 | 4.94e-36 | 140 |
| Msa0295010 | AT1G74920.1 | 29.680 | 438 | 284 | 14 | 30 | 454 | 74 | 500 | 7.07e-36 | 139 |
| Msa0295010 | AT3G48170.1 | 26.737 | 475 | 303 | 16 | 6 | 454 | 45 | 500 | 5.03e-31 | 125 |
| Msa0295010 | AT1G23800.1 | 27.434 | 452 | 301 | 14 | 2 | 440 | 87 | 524 | 3.30e-30 | 124 |
| Msa0295010 | AT3G48000.1 | 26.991 | 452 | 303 | 13 | 2 | 440 | 91 | 528 | 1.57e-27 | 116 |
| Msa0295010 | AT3G24503.1 | 27.529 | 425 | 278 | 17 | 30 | 440 | 83 | 491 | 1.10e-25 | 110 |
| Msa0295010 | AT2G24270.2 | 28.923 | 325 | 207 | 10 | 108 | 423 | 198 | 507 | 6.19e-24 | 105 |
| Msa0295010 | AT2G24270.3 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 1.18e-23 | 104 |
| Msa0295010 | AT2G24270.1 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 1.18e-23 | 104 |
| Msa0295010 | AT2G24270.4 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 1.20e-23 | 104 |
| Msa0295010 | AT1G54100.2 | 26.571 | 350 | 236 | 9 | 108 | 447 | 154 | 492 | 1.25e-18 | 89.0 |
| Msa0295010 | AT1G54100.1 | 26.571 | 350 | 236 | 9 | 108 | 447 | 154 | 492 | 1.25e-18 | 89.0 |
| Msa0295010 | AT1G23800.2 | 27.673 | 318 | 206 | 12 | 2 | 307 | 87 | 392 | 5.63e-15 | 77.4 |
| Msa0295010 | AT2G14170.2 | 23.288 | 438 | 298 | 12 | 29 | 443 | 58 | 480 | 3.57e-12 | 68.9 |
| Msa0295010 | AT2G14170.1 | 23.288 | 438 | 298 | 12 | 29 | 443 | 167 | 589 | 4.20e-12 | 68.9 |
| Msa0295010 | AT2G14170.3 | 23.919 | 393 | 272 | 10 | 29 | 404 | 167 | 549 | 2.51e-11 | 66.6 |
Find 115 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTATGTAGATTTA+TGG | 0.118638 | 2_3:-47209288 | Msa0295010:intron |
| CACTGTTCTACCAAATTATT+TGG | 0.132543 | 2_3:-47211632 | Msa0295010:CDS |
| TACTTATCTTACAGTGATTA+TGG | 0.138309 | 2_3:+47209193 | None:intergenic |
| TATTGTTATTCTTTATTTCT+AGG | 0.144314 | 2_3:-47208068 | Msa0295010:three_prime_UTR |
| CACTTGAAAGTAGTGCTATT+TGG | 0.163353 | 2_3:+47211925 | None:intergenic |
| TTCTCCTAGCCACAGCTTTA+TGG | 0.164740 | 2_3:+47208299 | None:intergenic |
| AAGGCCCTCAAGAAGGATTT+AGG | 0.176467 | 2_3:-47212319 | Msa0295010:CDS |
| AGGAGTTGCTCTCCAATTTC+TGG | 0.180506 | 2_3:+47211577 | None:intergenic |
| CAATAATCAGCTATCCTTAT+TGG | 0.190072 | 2_3:+47208086 | None:intergenic |
| CCATTATTGTCCAAATAATT+TGG | 0.194174 | 2_3:+47211622 | None:intergenic |
| GCAATGCTGTTGGATTCTTT+TGG | 0.215212 | 2_3:+47210563 | None:intergenic |
| TTGATTCACTTTCAACTTCT+TGG | 0.229573 | 2_3:-47211325 | Msa0295010:CDS |
| ACTTGAAAGTAGTGCTATTT+GGG | 0.262171 | 2_3:+47211926 | None:intergenic |
| TGGAGAGAATCACAACTAAA+AGG | 0.262228 | 2_3:-47212382 | Msa0295010:CDS |
| CCAAATTATTTGGACAATAA+TGG | 0.270029 | 2_3:-47211622 | Msa0295010:CDS |
| TATGGAACCAACAATATTAC+TGG | 0.285040 | 2_3:-47209270 | Msa0295010:CDS |
| GCATAAATTGCTAGAGGTTT+AGG | 0.288414 | 2_3:+47209009 | None:intergenic |
| TTTACAACTATCATCCAATA+AGG | 0.295369 | 2_3:-47208100 | Msa0295010:three_prime_UTR |
| GATGGCTGTGAAACGAATTT+TGG | 0.298929 | 2_3:-47210810 | Msa0295010:CDS |
| GTGTCCTTGGAGCCATTAAT+TGG | 0.298989 | 2_3:-47211727 | Msa0295010:CDS |
| ATTGAAGGTGGACCAGAAAT+TGG | 0.299642 | 2_3:-47211589 | Msa0295010:CDS |
| GTTAAAGAAATCCATTGATT+TGG | 0.305202 | 2_3:-47212149 | Msa0295010:CDS |
| AAGAACATGAGAAAGTATTA+TGG | 0.305368 | 2_3:-47212430 | Msa0295010:CDS |
| GCAGCTATGGCTCCAATTAA+TGG | 0.306017 | 2_3:+47211715 | None:intergenic |
| ACTCCTATAACTCTGGAGTT+AGG | 0.328012 | 2_3:-47211368 | Msa0295010:CDS |
| AAAAGCACACATTAGAATCT+TGG | 0.333702 | 2_3:+47208026 | None:intergenic |
| GAGGAGACTCTTGATTCTAT+TGG | 0.336102 | 2_3:+47210517 | None:intergenic |
| TGTAAGCTTCTTCAAGTAGT+TGG | 0.339552 | 2_3:+47208224 | None:intergenic |
| TGATTCACTTTCAACTTCTT+GGG | 0.343615 | 2_3:-47211324 | Msa0295010:CDS |
| GGAGTTCTCAGTGGAAGCTT+TGG | 0.372513 | 2_3:-47212464 | Msa0295010:CDS |
| CTCCTATAACTCTGGAGTTA+GGG | 0.372962 | 2_3:-47211367 | Msa0295010:CDS |
| GGTGCATCAGTCTCTAATAT+TGG | 0.374772 | 2_3:-47212493 | None:intergenic |
| TTCAAAACGTTCATTATATG+AGG | 0.382788 | 2_3:-47208155 | Msa0295010:CDS |
| ACCACCGATTCTTTGACATT+AGG | 0.390930 | 2_3:+47210488 | None:intergenic |
| ACTTATCTTACAGTGATTAT+GGG | 0.400023 | 2_3:+47209194 | None:intergenic |
| AGGCCCTCAAGAAGGATTTA+GGG | 0.400687 | 2_3:-47212318 | Msa0295010:CDS |
| GGACTTTATTGCCAAATCAA+TGG | 0.403173 | 2_3:+47212138 | None:intergenic |
| AGAACATGAGAAAGTATTAT+GGG | 0.405722 | 2_3:-47212429 | Msa0295010:CDS |
| GGAGTTGGTGAATGTGGATT+TGG | 0.413532 | 2_3:-47208361 | Msa0295010:CDS |
| ACCATCCCATTTGGAGGAGT+TGG | 0.443845 | 2_3:-47208376 | Msa0295010:CDS |
| ATAGCGGATACCATCCCATT+TGG | 0.449228 | 2_3:-47208385 | Msa0295010:CDS |
| AACAATCCTTGCAATGCTGT+TGG | 0.454731 | 2_3:+47210553 | None:intergenic |
| ATTTAATGATGCAATTCTAC+AGG | 0.457393 | 2_3:-47208923 | Msa0295010:intron |
| GAAATTGTTGCTGAGCCTCT+TGG | 0.457989 | 2_3:-47211900 | Msa0295010:CDS |
| TTTGGTTCAGGTTTCCTCCA+TGG | 0.459950 | 2_3:-47208261 | Msa0295010:CDS |
| CTTCCCTAAATCCTTCTTGA+GGG | 0.460635 | 2_3:+47212315 | None:intergenic |
| CATTCACCAACTCCTCCAAA+TGG | 0.461138 | 2_3:+47208370 | None:intergenic |
| ATCATGACAGAAGAAATCTT+TGG | 0.467373 | 2_3:-47209227 | Msa0295010:CDS |
| CAAAACACTGCAGAGAAGAT+TGG | 0.468898 | 2_3:-47208974 | Msa0295010:CDS |
| GCATCTCACTCCTATAACTC+TGG | 0.477082 | 2_3:-47211375 | Msa0295010:CDS |
| TTGGTATCTGAAACATCATC+CGG | 0.480961 | 2_3:-47208955 | Msa0295010:CDS |
| TGGAACTTGTTAAGATTCCA+TGG | 0.484735 | 2_3:+47208244 | None:intergenic |
| GCTTACAATTTAAACTACAT+TGG | 0.487149 | 2_3:-47208208 | Msa0295010:CDS |
| TAGGTGGAGTTAATGAAGGA+AGG | 0.488749 | 2_3:-47210611 | Msa0295010:CDS |
| GCAAAGTATGGGGCTTGTGC+AGG | 0.494839 | 2_3:-47210785 | Msa0295010:CDS |
| TGCAACATTTCCAGCAGCTA+TGG | 0.497942 | 2_3:+47211702 | None:intergenic |
| AATTCCATGATGAGATTATG+AGG | 0.500503 | 2_3:+47211871 | None:intergenic |
| AAAATGGATGGCTGGTAAAG+AGG | 0.500707 | 2_3:-47212110 | Msa0295010:intron |
| TCTTTAGGTGGAGTTAATGA+AGG | 0.502645 | 2_3:-47210615 | Msa0295010:intron |
| AATGGCATTAAGATCATTGA+AGG | 0.505160 | 2_3:-47211604 | Msa0295010:CDS |
| GGAGAGAATCACAACTAAAA+GGG | 0.505316 | 2_3:-47212381 | Msa0295010:CDS |
| GCTTCCCTAAATCCTTCTTG+AGG | 0.505953 | 2_3:+47212314 | None:intergenic |
| AGGTGGAGTTAATGAAGGAA+GGG | 0.506548 | 2_3:-47210610 | Msa0295010:CDS |
| TGTGGATTTGGCAAGTATCA+TGG | 0.509305 | 2_3:-47208349 | Msa0295010:CDS |
| CTAGAAGAGAAGAAGAAGTA+GGG | 0.517439 | 2_3:+47211656 | None:intergenic |
| ATGAGAAAGTATTATGGGAG+TGG | 0.517718 | 2_3:-47212424 | Msa0295010:CDS |
| GCTAGAAGAGAAGAAGAAGT+AGG | 0.519054 | 2_3:+47211655 | None:intergenic |
| TGAACCTAATGTCAAAGAAT+CGG | 0.526059 | 2_3:-47210492 | Msa0295010:CDS |
| GAAAGTGAATCAACCAGTGC+TGG | 0.531970 | 2_3:+47211335 | None:intergenic |
| AAATGAGGAAGAGATCTTGA+AGG | 0.532562 | 2_3:-47212338 | Msa0295010:CDS |
| GATTGTTATGTCTGCAGCAG+TGG | 0.533250 | 2_3:-47211399 | Msa0295010:CDS |
| ATTCACCAACTCCTCCAAAT+GGG | 0.535804 | 2_3:+47208371 | None:intergenic |
| TTAATTGGAGCCATAGCTGC+TGG | 0.536986 | 2_3:-47211712 | Msa0295010:CDS |
| GTGGATTTGGCAAGTATCAT+GGG | 0.538798 | 2_3:-47208348 | Msa0295010:CDS |
| ATCATTAAATACAATGCTCC+CGG | 0.543496 | 2_3:+47208936 | None:intergenic |
| TTTGGAGGAGTTGGTGAATG+TGG | 0.544032 | 2_3:-47208367 | Msa0295010:CDS |
| TCCTATAACTCTGGAGTTAG+GGG | 0.551937 | 2_3:-47211366 | Msa0295010:CDS |
| TAACTTTGTCAAAGAAAATG+AGG | 0.553225 | 2_3:-47212353 | Msa0295010:CDS |
| GCGGATACCATCCCATTTGG+AGG | 0.558921 | 2_3:-47208382 | Msa0295010:CDS |
| TACAGTGATTATGGGAAGCA+CGG | 0.561570 | 2_3:+47209202 | None:intergenic |
| GTCATGATTGCTGATTCAAG+TGG | 0.562929 | 2_3:+47209242 | None:intergenic |
| AGTCCTAAAACCTTCAGAGT+TGG | 0.563574 | 2_3:-47211680 | Msa0295010:CDS |
| GAAGTAGGGGCCAACTCTGA+AGG | 0.570056 | 2_3:+47211670 | None:intergenic |
| TAGTCCTCATAATCTCATCA+TGG | 0.574613 | 2_3:-47211875 | Msa0295010:CDS |
| GGCTCCAATTAATGGCTCCA+AGG | 0.575676 | 2_3:+47211723 | None:intergenic |
| GTGAAAGCATAAATTGCTAG+AGG | 0.575786 | 2_3:+47209003 | None:intergenic |
| GATCTTGAAGGCCCTCAAGA+AGG | 0.580261 | 2_3:-47212326 | Msa0295010:CDS |
| ATATTAGGAAGTGCACGAGT+GGG | 0.582326 | 2_3:-47211425 | Msa0295010:intron |
| AGTCTCTAATATTGGTAACA+TGG | 0.591966 | 2_3:-47212485 | None:intergenic |
| TTTAGGGAAGCATCATGTTG+AGG | 0.599307 | 2_3:-47212302 | Msa0295010:CDS |
| TATATTAGGAAGTGCACGAG+TGG | 0.599974 | 2_3:-47211426 | Msa0295010:intron |
| AAAGAGCTTCAGTTCCACAT+TGG | 0.608853 | 2_3:-47210726 | Msa0295010:intron |
| ACCAACTCCTCCAAATGGGA+TGG | 0.608963 | 2_3:+47208375 | None:intergenic |
| TCATGATTGCTGATTCAAGT+GGG | 0.615088 | 2_3:+47209243 | None:intergenic |
| GGCATTAAGATCATTGAAGG+TGG | 0.617998 | 2_3:-47211601 | Msa0295010:CDS |
| ACAGTGATTATGGGAAGCAC+GGG | 0.618850 | 2_3:+47209203 | None:intergenic |
| ACCTAATGTCAAAGAATCGG+TGG | 0.620390 | 2_3:-47210489 | Msa0295010:CDS |
| AAGAATCCAACAGCATTGCA+AGG | 0.622783 | 2_3:-47210559 | Msa0295010:CDS |
| TAGAAGAGAAGAAGAAGTAG+GGG | 0.625377 | 2_3:+47211657 | None:intergenic |
| TAGGAAGTGCACGAGTGGGG+AGG | 0.625912 | 2_3:-47211421 | Msa0295010:CDS |
| GTCACCATAAAGCTGTGGCT+AGG | 0.633443 | 2_3:-47208303 | Msa0295010:CDS |
| TGGTATCTGAAACATCATCC+GGG | 0.645652 | 2_3:-47208954 | Msa0295010:CDS |
| TATTAGGAAGTGCACGAGTG+GGG | 0.646738 | 2_3:-47211424 | Msa0295010:intron |
| CAGGTGGAGAAGATTGAAGA+CGG | 0.650633 | 2_3:-47209054 | Msa0295010:CDS |
| TTCAACTTCTTGGGACAGAG+AGG | 0.650826 | 2_3:-47211315 | Msa0295010:intron |
| CAAATAATTTGGTAGAACAG+TGG | 0.655707 | 2_3:+47211633 | None:intergenic |
| ATGATTGCTGATTCAAGTGG+GGG | 0.665274 | 2_3:+47209245 | None:intergenic |
| CTTGAAAGTAGTGCTATTTG+GGG | 0.666143 | 2_3:+47211927 | None:intergenic |
| CCTATAACTCTGGAGTTAGG+GGG | 0.670137 | 2_3:-47211365 | Msa0295010:CDS |
| TGGTAACATGGAGTTCTCAG+TGG | 0.677211 | 2_3:-47212473 | Msa0295010:exon |
| CATGATTGCTGATTCAAGTG+GGG | 0.687119 | 2_3:+47209244 | None:intergenic |
| CTTTGACATTAGGTTCACTG+AGG | 0.691733 | 2_3:+47210498 | None:intergenic |
| ATTCAGTCACCATAAAGCTG+TGG | 0.694399 | 2_3:-47208308 | Msa0295010:CDS |
| ATTATGAGGACTAGACCAAG+AGG | 0.704548 | 2_3:+47211885 | None:intergenic |
| AACTTGTTAAGATTCCATGG+AGG | 0.758325 | 2_3:+47208247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAATAAATAAAAT+CGG | + | chr2_3:47209618-47209637 | None:intergenic | 0.0% |
| !! | TTTCAATAAACTAAATATAA+TGG | + | chr2_3:47208458-47208477 | None:intergenic | 10.0% |
| !!! | AGTTTTATTAATATAAACTA+AGG | - | chr2_3:47209466-47209485 | Msa0295010:intron | 10.0% |
| !! | TAAAAAAATAAATAAAATCG+GGG | + | chr2_3:47209616-47209635 | None:intergenic | 10.0% |
| !!! | ATGTATATTTCTGTTTAATT+TGG | - | chr2_3:47208264-47208283 | Msa0295010:CDS | 15.0% |
| !! | GCAAATTATATATATACATA+TGG | + | chr2_3:47208304-47208323 | None:intergenic | 15.0% |
| !!! | TATGTATATATATAATTTGC+AGG | - | chr2_3:47208304-47208323 | Msa0295010:CDS | 15.0% |
| !!! | TTTAATTTCATGTAAAAGTA+TGG | + | chr2_3:47208496-47208515 | None:intergenic | 15.0% |
| !! | CCTATATTAATAAAACTTAA+TGG | + | chr2_3:47209326-47209345 | None:intergenic | 15.0% |
| !!! | CCATTAAGTTTTATTAATAT+AGG | - | chr2_3:47209323-47209342 | Msa0295010:intron | 15.0% |
| !! | ATTTAAATGATTGAATTAAC+CGG | - | chr2_3:47210218-47210237 | Msa0295010:intron | 15.0% |
| !! | ATTCCCAAATAAATATTATT+TGG | - | chr2_3:47210260-47210279 | Msa0295010:intron | 15.0% |
| !! | TGTCCAAATAATATTTATTT+GGG | + | chr2_3:47210266-47210285 | None:intergenic | 15.0% |
| !! | CAAAATCAAGAAAAAATTAA+AGG | + | chr2_3:47210362-47210381 | None:intergenic | 15.0% |
| !!! | ATAAGGTATTAAAAAAAACA+AGG | + | chr2_3:47210701-47210720 | None:intergenic | 15.0% |
| !!! | GTTAACTACTTTTTTTTAAA+GGG | + | chr2_3:47210812-47210831 | None:intergenic | 15.0% |
| !!! | AGTTAACTACTTTTTTTTAA+AGG | + | chr2_3:47210813-47210832 | None:intergenic | 15.0% |
| !!! | AATTTATTCAAAGGTATTTT+AGG | - | chr2_3:47210940-47210959 | Msa0295010:intron | 15.0% |
| !! | ATCATAAATATAATCATGTA+AGG | + | chr2_3:47211157-47211176 | None:intergenic | 15.0% |
| !!! | ATGATTTTTCTTTCTTTTAA+CGG | - | chr2_3:47211816-47211835 | Msa0295010:intron | 15.0% |
| !!! | AAATAGTCTTAAAAAAAACT+TGG | + | chr2_3:47211880-47211899 | None:intergenic | 15.0% |
| !!! | TATTGTTATTCTTTATTTCT+AGG | - | chr2_3:47212415-47212434 | Msa0295010:CDS | 15.0% |
| !!! | TATATATATAATTTGCAGGT+TGG | - | chr2_3:47208308-47208327 | Msa0295010:CDS | 20.0% |
| !!! | CTGTTAAGTTGAAAATAATA+AGG | + | chr2_3:47208527-47208546 | None:intergenic | 20.0% |
| !!! | CTTATTATTTTCAACTTAAC+AGG | - | chr2_3:47208525-47208544 | Msa0295010:intron | 20.0% |
| !! | TTGTAATGATCCAATATATT+AGG | - | chr2_3:47209043-47209062 | Msa0295010:CDS | 20.0% |
| !!! | AAAGAGTTTAAATCTTTTCT+AGG | - | chr2_3:47209537-47209556 | Msa0295010:intron | 20.0% |
| !! | GTGTCCAAATAATATTTATT+TGG | + | chr2_3:47210267-47210286 | None:intergenic | 20.0% |
| !!! | TGTGACCAAATATTTTTATT+TGG | - | chr2_3:47210386-47210405 | Msa0295010:intron | 20.0% |
| !!! | GTGACCAAATATTTTTATTT+GGG | - | chr2_3:47210387-47210406 | Msa0295010:intron | 20.0% |
| !! | CAAACCCAAATAAAAATATT+TGG | + | chr2_3:47210394-47210413 | None:intergenic | 20.0% |
| !!! | TTTTTCCTCTTAAGAATTTT+AGG | - | chr2_3:47210553-47210572 | Msa0295010:CDS | 20.0% |
| !!! | ATGTTTATTATTTGAAGTCA+AGG | + | chr2_3:47210609-47210628 | None:intergenic | 20.0% |
| !! | TTGATTGCTTATATATGAAA+CGG | + | chr2_3:47210777-47210796 | None:intergenic | 20.0% |
| !! | CAAAAACTCTATAATGTTTA+TGG | + | chr2_3:47210906-47210925 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTTCTTTTTCTT+TGG | + | chr2_3:47211006-47211025 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTACATAGATCT+CGG | + | chr2_3:47211065-47211084 | None:intergenic | 20.0% |
| !!! | GCTTTTGAAAACATTTTTTT+AGG | + | chr2_3:47211106-47211125 | None:intergenic | 20.0% |
| !! | ATAATCATGTAAGGAAAAAT+TGG | + | chr2_3:47211148-47211167 | None:intergenic | 20.0% |
| !! | TGAAATCTTATGTAGATTTA+TGG | - | chr2_3:47211195-47211214 | Msa0295010:intron | 20.0% |
| !! | GATTAAAAAGGACTAAAATA+AGG | + | chr2_3:47211333-47211352 | None:intergenic | 20.0% |
| !!! | TTGAAGAATACTGATTAAAA+AGG | + | chr2_3:47211345-47211364 | None:intergenic | 20.0% |
| !! | TAAACAATTGAAACTAAACT+TGG | + | chr2_3:47211405-47211424 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCAGTATATAG+CGG | - | chr2_3:47212082-47212101 | Msa0295010:intron | 20.0% |
| !!! | AAGAACATGAGAAAGTATTA+TGG | - | chr2_3:47208053-47208072 | Msa0295010:three_prime_UTR | 25.0% |
| !!! | AGAACATGAGAAAGTATTAT+GGG | - | chr2_3:47208054-47208073 | Msa0295010:three_prime_UTR | 25.0% |
| ! | TAACTTTGTCAAAGAAAATG+AGG | - | chr2_3:47208130-47208149 | Msa0295010:exon | 25.0% |
| !! | GTTAAAGAAATCCATTGATT+TGG | - | chr2_3:47208334-47208353 | Msa0295010:CDS | 25.0% |
| ! | CAATAAAGTCCTTCAAAAAA+TGG | - | chr2_3:47208357-47208376 | Msa0295010:CDS | 25.0% |
| ! | AAGTTGAAAATAATAAGGCA+CGG | + | chr2_3:47208522-47208541 | None:intergenic | 25.0% |
| ! | CCATTATTGTCCAAATAATT+TGG | + | chr2_3:47208864-47208883 | None:intergenic | 25.0% |
| ! | CCAAATTATTTGGACAATAA+TGG | - | chr2_3:47208861-47208880 | Msa0295010:intron | 25.0% |
| ! | AGAAGGTAAAAGAAATAGTA+AGG | + | chr2_3:47208969-47208988 | None:intergenic | 25.0% |
| ! | AATTGAAATGAAAAGCAAGA+AGG | + | chr2_3:47208986-47209005 | None:intergenic | 25.0% |
| ! | GTTTAATTAATCTTGTCACA+TGG | - | chr2_3:47209196-47209215 | Msa0295010:intron | 25.0% |
| ! | CAAAAGTAGCAAATTAATGA+AGG | - | chr2_3:47209262-47209281 | Msa0295010:CDS | 25.0% |
| ! | CATAAAAATACCGAATTGTT+AGG | - | chr2_3:47209354-47209373 | Msa0295010:intron | 25.0% |
| ! | ATTTCTGTTGAACAATAAGA+TGG | - | chr2_3:47209655-47209674 | Msa0295010:intron | 25.0% |
| !!! | TCCTTTGTTTTATTCTCTTT+AGG | - | chr2_3:47209853-47209872 | Msa0295010:intron | 25.0% |
| ! | ACCTAAAGAGAATAAAACAA+AGG | + | chr2_3:47209857-47209876 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTCTCTTTAGG+TGG | - | chr2_3:47209856-47209875 | Msa0295010:intron | 25.0% |
| ! | GAAGGGATTAAAAAAATGTT+TGG | - | chr2_3:47209890-47209909 | Msa0295010:intron | 25.0% |
| ! | ATTTCTCATTTAGTCATTCT+TGG | + | chr2_3:47210449-47210468 | None:intergenic | 25.0% |
| ! | TGTAATAGAAAGAAGAAAGA+AGG | + | chr2_3:47210736-47210755 | None:intergenic | 25.0% |
| ! | TGATTGCTTATATATGAAAC+GGG | + | chr2_3:47210776-47210795 | None:intergenic | 25.0% |
| !! | GGAAAATTGTACATTTTACA+AGG | + | chr2_3:47211042-47211061 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTACATAGATCTC+GGG | + | chr2_3:47211064-47211083 | None:intergenic | 25.0% |
| ! | ACTTATCTTACAGTGATTAT+GGG | + | chr2_3:47211292-47211311 | None:intergenic | 25.0% |
| ! | TACTTATCTTACAGTGATTA+TGG | + | chr2_3:47211293-47211312 | None:intergenic | 25.0% |
| ! | AACTAAACTTGGTTAACATT+TGG | + | chr2_3:47211394-47211413 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGTTTATTTGC+AGG | - | chr2_3:47211410-47211429 | Msa0295010:CDS | 25.0% |
| ! | ATTTAATGATGCAATTCTAC+AGG | - | chr2_3:47211560-47211579 | Msa0295010:CDS | 25.0% |
| ! | CATAGTAGTGAAAATATGTT+AGG | + | chr2_3:47211632-47211651 | None:intergenic | 25.0% |
| ! | TCTAACCGTATATAAATAGT+CGG | + | chr2_3:47211787-47211806 | None:intergenic | 25.0% |
| !! | TTTTCACAATAAGATAGTGA+GGG | + | chr2_3:47211954-47211973 | None:intergenic | 25.0% |
| ! | GGTGTTCTTGATAAAATTAA+CGG | + | chr2_3:47212034-47212053 | None:intergenic | 25.0% |
| !! | ATTTTATCAAGAACACCAAT+TGG | - | chr2_3:47212037-47212056 | Msa0295010:intron | 25.0% |
| ! | ATTATCTTTCATATGCCAAT+TGG | + | chr2_3:47212055-47212074 | None:intergenic | 25.0% |
| ! | GCTTACAATTTAAACTACAT+TGG | - | chr2_3:47212275-47212294 | Msa0295010:intron | 25.0% |
| ! | TTCAAAACGTTCATTATATG+AGG | - | chr2_3:47212328-47212347 | Msa0295010:CDS | 25.0% |
| ! | TGGATGATAGTTGTAAAAAT+AGG | + | chr2_3:47212380-47212399 | None:intergenic | 25.0% |
| ! | TTTACAACTATCATCCAATA+AGG | - | chr2_3:47212383-47212402 | Msa0295010:CDS | 25.0% |
| !! | GAAAAACAAAAGAAGCATCA+TGG | - | chr2_3:47208081-47208100 | Msa0295010:three_prime_UTR | 30.0% |
| AAAGTCCTTCAAAAAATGGA+TGG | - | chr2_3:47208361-47208380 | Msa0295010:CDS | 30.0% | |
| !! | ACTTGAAAGTAGTGCTATTT+GGG | + | chr2_3:47208560-47208579 | None:intergenic | 30.0% |
| AATTCCATGATGAGATTATG+AGG | + | chr2_3:47208615-47208634 | None:intergenic | 30.0% | |
| ! | TCATCATGGAATTTTCCATT+TGG | - | chr2_3:47208622-47208641 | Msa0295010:intron | 30.0% |
| ! | TCCATTTGGTGAGTAAAATA+TGG | - | chr2_3:47208636-47208655 | Msa0295010:intron | 30.0% |
| !! | TTTCTCTTGGTTTTTGTAAC+AGG | - | chr2_3:47208732-47208751 | Msa0295010:intron | 30.0% |
| CAAATAATTTGGTAGAACAG+TGG | + | chr2_3:47208853-47208872 | None:intergenic | 30.0% | |
| CACTGTTCTACCAAATTATT+TGG | - | chr2_3:47208851-47208870 | Msa0295010:intron | 30.0% | |
| AATGGCATTAAGATCATTGA+AGG | - | chr2_3:47208879-47208898 | Msa0295010:intron | 30.0% | |
| AGCAACTCCTACATAAAAAA+TGG | - | chr2_3:47208919-47208938 | Msa0295010:intron | 30.0% | |
| GCAACTCCTACATAAAAAAT+GGG | - | chr2_3:47208920-47208939 | Msa0295010:intron | 30.0% | |
| !!! | TCTTGTCCCATTTTTTATGT+AGG | + | chr2_3:47208929-47208948 | None:intergenic | 30.0% |
| TTGATTCACTTTCAACTTCT+TGG | - | chr2_3:47209158-47209177 | Msa0295010:intron | 30.0% | |
| TGATTCACTTTCAACTTCTT+GGG | - | chr2_3:47209159-47209178 | Msa0295010:intron | 30.0% | |
| ATGTACCTTCTATTGTAGAA+AGG | - | chr2_3:47209220-47209239 | Msa0295010:CDS | 30.0% | |
| !! | ACCAAAATGATAATGGTCAT+CGG | + | chr2_3:47209434-47209453 | None:intergenic | 30.0% |
| TAGGTAGACCAAAATGATAA+TGG | + | chr2_3:47209441-47209460 | None:intergenic | 30.0% | |
| TGAACCTAATGTCAAAGAAT+CGG | - | chr2_3:47209991-47210010 | Msa0295010:intron | 30.0% | |
| !!! | TCGACGAAGTTTTAAATTCA+CGG | - | chr2_3:47210088-47210107 | Msa0295010:intron | 30.0% |
| !! | TCCTCTTAAGAATTTTAGGA+TGG | - | chr2_3:47210557-47210576 | Msa0295010:CDS | 30.0% |
| ACCATCCTAAAATTCTTAAG+AGG | + | chr2_3:47210561-47210580 | None:intergenic | 30.0% | |
| CAAGGTGAAAACATGAAATA+TGG | + | chr2_3:47210591-47210610 | None:intergenic | 30.0% | |
| AGGAATGATAGCATTAACTA+TGG | - | chr2_3:47210960-47210979 | Msa0295010:intron | 30.0% | |
| !!! | TTTTTTGTACATAGATCTCG+GGG | + | chr2_3:47211063-47211082 | None:intergenic | 30.0% |
| !! | AGGAAAAATTGGTCTCTTTT+AGG | + | chr2_3:47211137-47211156 | None:intergenic | 30.0% |
| TATGGAACCAACAATATTAC+TGG | - | chr2_3:47211213-47211232 | Msa0295010:intron | 30.0% | |
| ATCATGACAGAAGAAATCTT+TGG | - | chr2_3:47211256-47211275 | Msa0295010:intron | 30.0% | |
| !! | AGTATTCTTCAAAAGTGTCA+AGG | - | chr2_3:47211353-47211372 | Msa0295010:CDS | 30.0% |
| TTCAATTGTTTATTTGCAGG+TGG | - | chr2_3:47211413-47211432 | Msa0295010:CDS | 30.0% | |
| ATCATTAAATACAATGCTCC+CGG | + | chr2_3:47211550-47211569 | None:intergenic | 30.0% | |
| TGTAGCCGACTATTTATATA+CGG | - | chr2_3:47211779-47211798 | Msa0295010:intron | 30.0% | |
| ! | CTTTTCACAATAAGATAGTG+AGG | + | chr2_3:47211955-47211974 | None:intergenic | 30.0% |
| !!! | GAAGTTACTACACTGATTTT+TGG | - | chr2_3:47212204-47212223 | Msa0295010:intron | 30.0% |
| !!! | GGAATACTTCTTGTTTTACT+CGG | - | chr2_3:47212296-47212315 | Msa0295010:CDS | 30.0% |
| CAATAATCAGCTATCCTTAT+TGG | + | chr2_3:47212400-47212419 | None:intergenic | 30.0% | |
| ! | AAAAGCACACATTAGAATCT+TGG | + | chr2_3:47212460-47212479 | None:intergenic | 30.0% |
| !! | ATGAGAAAGTATTATGGGAG+TGG | - | chr2_3:47208059-47208078 | Msa0295010:three_prime_UTR | 35.0% |
| TGGAGAGAATCACAACTAAA+AGG | - | chr2_3:47208101-47208120 | Msa0295010:three_prime_UTR | 35.0% | |
| GGAGAGAATCACAACTAAAA+GGG | - | chr2_3:47208102-47208121 | Msa0295010:three_prime_UTR | 35.0% | |
| AAATGAGGAAGAGATCTTGA+AGG | - | chr2_3:47208145-47208164 | Msa0295010:CDS | 35.0% | |
| GGACTTTATTGCCAAATCAA+TGG | + | chr2_3:47208348-47208367 | None:intergenic | 35.0% | |
| !! | CTTGAAAGTAGTGCTATTTG+GGG | + | chr2_3:47208559-47208578 | None:intergenic | 35.0% |
| ! | CACTTGAAAGTAGTGCTATT+TGG | + | chr2_3:47208561-47208580 | None:intergenic | 35.0% |
| TAGTCCTCATAATCTCATCA+TGG | - | chr2_3:47208608-47208627 | Msa0295010:intron | 35.0% | |
| ! | GCCATATTTTACTCACCAAA+TGG | + | chr2_3:47208640-47208659 | None:intergenic | 35.0% |
| GTTCAAAGTTGTGTTTCTCT+TGG | - | chr2_3:47208719-47208738 | Msa0295010:intron | 35.0% | |
| TAGAAGAGAAGAAGAAGTAG+GGG | + | chr2_3:47208829-47208848 | None:intergenic | 35.0% | |
| CTAGAAGAGAAGAAGAAGTA+GGG | + | chr2_3:47208830-47208849 | None:intergenic | 35.0% | |
| ! | TGGGACAAGATATTTTTCAC+TGG | - | chr2_3:47208939-47208958 | Msa0295010:CDS | 35.0% |
| TCGTGCACTTCCTAATATAT+TGG | + | chr2_3:47209056-47209075 | None:intergenic | 35.0% | |
| CATTGCCTTTCTACAATAGA+AGG | + | chr2_3:47209228-47209247 | None:intergenic | 35.0% | |
| TCTATTGTAGAAAGGCAATG+TGG | - | chr2_3:47209228-47209247 | Msa0295010:CDS | 35.0% | |
| ! | ATGAGTTGGGATTCAATCAA+CGG | + | chr2_3:47209393-47209412 | None:intergenic | 35.0% |
| ! | TCCGATGACCATTATCATTT+TGG | - | chr2_3:47209430-47209449 | Msa0295010:intron | 35.0% |
| GTCCACAATGACTATATGTT+AGG | - | chr2_3:47209490-47209509 | Msa0295010:intron | 35.0% | |
| CTCCTAACATATAGTCATTG+TGG | + | chr2_3:47209495-47209514 | None:intergenic | 35.0% | |
| TAGGACATTCGCAAAATGAT+CGG | - | chr2_3:47209556-47209575 | Msa0295010:intron | 35.0% | |
| !! | GAATTTTGGTGGCAAAGTAT+GGG | - | chr2_3:47209687-47209706 | Msa0295010:intron | 35.0% |
| !! | AATTTTGGTGGCAAAGTATG+GGG | - | chr2_3:47209688-47209707 | Msa0295010:intron | 35.0% |
| ! | AACTGAAGCTCTTTTCTACA+AGG | + | chr2_3:47209751-47209770 | None:intergenic | 35.0% |
| !!! | TTTCCTGCTTTTTACCAATG+TGG | + | chr2_3:47209774-47209793 | None:intergenic | 35.0% |
| TCTTTAGGTGGAGTTAATGA+AGG | - | chr2_3:47209868-47209887 | Msa0295010:intron | 35.0% | |
| ! | CAATGCTGTTGGATTCTTTT+GGG | + | chr2_3:47209922-47209941 | None:intergenic | 35.0% |
| TTAACCGGAAAAGTCTTTCA+TGG | - | chr2_3:47210233-47210252 | Msa0295010:intron | 35.0% | |
| TTCTTGGATAAGTCAATTCG+AGG | + | chr2_3:47210433-47210452 | None:intergenic | 35.0% | |
| TGCTTATATATGAAACGGGA+GGG | + | chr2_3:47210772-47210791 | None:intergenic | 35.0% | |
| TTGCTTATATATGAAACGGG+AGG | + | chr2_3:47210773-47210792 | None:intergenic | 35.0% | |
| TGTTTATGGAACAAGTTCTC+AGG | + | chr2_3:47210892-47210911 | None:intergenic | 35.0% | |
| !!! | TGGTCTCTTTTAGGTTCATT+TGG | + | chr2_3:47211128-47211147 | None:intergenic | 35.0% |
| !! | TCATGATTGCTGATTCAAGT+GGG | + | chr2_3:47211243-47211262 | None:intergenic | 35.0% |
| GCATAAATTGCTAGAGGTTT+AGG | + | chr2_3:47211477-47211496 | None:intergenic | 35.0% | |
| ! | GTGAAAGCATAAATTGCTAG+AGG | + | chr2_3:47211483-47211502 | None:intergenic | 35.0% |
| ! | TTGGTATCTGAAACATCATC+CGG | - | chr2_3:47211528-47211547 | Msa0295010:intron | 35.0% |
| TCACTACTATGAAACCAGTA+AGG | - | chr2_3:47211641-47211660 | Msa0295010:CDS | 35.0% | |
| CTTGCAAAACAAAACCTTAC+TGG | + | chr2_3:47211658-47211677 | None:intergenic | 35.0% | |
| AGAGAAGTTAAGTGGAAGTT+TGG | + | chr2_3:47211684-47211703 | None:intergenic | 35.0% | |
| !!! | ACTACACTGATTTTTGGTTC+AGG | - | chr2_3:47212210-47212229 | Msa0295010:intron | 35.0% |
| !! | AACTTGTTAAGATTCCATGG+AGG | + | chr2_3:47212239-47212258 | None:intergenic | 35.0% |
| !! | TGGAACTTGTTAAGATTCCA+TGG | + | chr2_3:47212242-47212261 | None:intergenic | 35.0% |
| TGTAAGCTTCTTCAAGTAGT+TGG | + | chr2_3:47212262-47212281 | None:intergenic | 35.0% | |
| CTTCCCTAAATCCTTCTTGA+GGG | + | chr2_3:47208171-47208190 | None:intergenic | 40.0% | |
| !! | TTTAGGGAAGCATCATGTTG+AGG | - | chr2_3:47208181-47208200 | Msa0295010:CDS | 40.0% |
| !! | TGTTGAGGCTTTTAGAGATG+AGG | - | chr2_3:47208196-47208215 | Msa0295010:CDS | 40.0% |
| TCCTTCAAAAAATGGATGGC+TGG | - | chr2_3:47208365-47208384 | Msa0295010:CDS | 40.0% | |
| !!! | ACCAGCCATCCATTTTTTGA+AGG | + | chr2_3:47208369-47208388 | None:intergenic | 40.0% |
| AAAATGGATGGCTGGTAAAG+AGG | - | chr2_3:47208373-47208392 | Msa0295010:CDS | 40.0% | |
| ATTATGAGGACTAGACCAAG+AGG | + | chr2_3:47208601-47208620 | None:intergenic | 40.0% | |
| !!! | TTTTGTAACAGGAGTGTCCT+TGG | - | chr2_3:47208743-47208762 | Msa0295010:intron | 40.0% |
| AGTCCTAAAACCTTCAGAGT+TGG | - | chr2_3:47208803-47208822 | Msa0295010:intron | 40.0% | |
| GCTAGAAGAGAAGAAGAAGT+AGG | + | chr2_3:47208831-47208850 | None:intergenic | 40.0% | |
| GGCATTAAGATCATTGAAGG+TGG | - | chr2_3:47208882-47208901 | Msa0295010:intron | 40.0% | |
| ATTGAAGGTGGACCAGAAAT+TGG | - | chr2_3:47208894-47208913 | Msa0295010:intron | 40.0% | |
| ! | TATATTAGGAAGTGCACGAG+TGG | - | chr2_3:47209057-47209076 | Msa0295010:intron | 40.0% |
| ! | ATATTAGGAAGTGCACGAGT+GGG | - | chr2_3:47209058-47209077 | Msa0295010:intron | 40.0% |
| !! | ACTCCTATAACTCTGGAGTT+AGG | - | chr2_3:47209115-47209134 | Msa0295010:intron | 40.0% |
| !! | CTCCTATAACTCTGGAGTTA+GGG | - | chr2_3:47209116-47209135 | Msa0295010:intron | 40.0% |
| !! | TCCTATAACTCTGGAGTTAG+GGG | - | chr2_3:47209117-47209136 | Msa0295010:intron | 40.0% |
| TGTAGAAAGGCAATGTGGAA+TGG | - | chr2_3:47209233-47209252 | Msa0295010:CDS | 40.0% | |
| TGGGATTCAATCAACGGTTA+CGG | + | chr2_3:47209387-47209406 | None:intergenic | 40.0% | |
| CACAGACTAGTGAATGAGTT+GGG | + | chr2_3:47209406-47209425 | None:intergenic | 40.0% | |
| TCACAGACTAGTGAATGAGT+TGG | + | chr2_3:47209407-47209426 | None:intergenic | 40.0% | |
| ! | GATGGCTGTGAAACGAATTT+TGG | - | chr2_3:47209673-47209692 | Msa0295010:intron | 40.0% |
| !! | CGAATTTTGGTGGCAAAGTA+TGG | - | chr2_3:47209686-47209705 | Msa0295010:intron | 40.0% |
| AAAGAGCTTCAGTTCCACAT+TGG | - | chr2_3:47209757-47209776 | Msa0295010:intron | 40.0% | |
| GTTCCACATTGGTAAAAAGC+AGG | - | chr2_3:47209768-47209787 | Msa0295010:intron | 40.0% | |
| TAGGTGGAGTTAATGAAGGA+AGG | - | chr2_3:47209872-47209891 | Msa0295010:intron | 40.0% | |
| AGGTGGAGTTAATGAAGGAA+GGG | - | chr2_3:47209873-47209892 | Msa0295010:intron | 40.0% | |
| ! | GCAATGCTGTTGGATTCTTT+TGG | + | chr2_3:47209923-47209942 | None:intergenic | 40.0% |
| AAGAATCCAACAGCATTGCA+AGG | - | chr2_3:47209924-47209943 | Msa0295010:intron | 40.0% | |
| AACAATCCTTGCAATGCTGT+TGG | + | chr2_3:47209933-47209952 | None:intergenic | 40.0% | |
| GAGGAGACTCTTGATTCTAT+TGG | + | chr2_3:47209969-47209988 | None:intergenic | 40.0% | |
| CTTTGACATTAGGTTCACTG+AGG | + | chr2_3:47209988-47210007 | None:intergenic | 40.0% | |
| ACCTAATGTCAAAGAATCGG+TGG | - | chr2_3:47209994-47210013 | Msa0295010:intron | 40.0% | |
| !! | ACCACCGATTCTTTGACATT+AGG | + | chr2_3:47209998-47210017 | None:intergenic | 40.0% |
| ! | GTCAAAGAATCGGTGGTTTT+TGG | - | chr2_3:47210001-47210020 | Msa0295010:intron | 40.0% |
| !! | AAAGAATCGGTGGTTTTTGG+TGG | - | chr2_3:47210004-47210023 | Msa0295010:intron | 40.0% |
| ! | GTGTCCATGAAAGACTTTTC+CGG | + | chr2_3:47210240-47210259 | None:intergenic | 40.0% |
| AAGTCAATTCGAGGCACAAT+TGG | + | chr2_3:47210424-47210443 | None:intergenic | 40.0% | |
| GAAGGCGAGCTATAGAAATA+AGG | + | chr2_3:47210718-47210737 | None:intergenic | 40.0% | |
| TATGGAACAAGTTCTCAGGA+GGG | + | chr2_3:47210888-47210907 | None:intergenic | 40.0% | |
| TTATGGAACAAGTTCTCAGG+AGG | + | chr2_3:47210889-47210908 | None:intergenic | 40.0% | |
| !! | ATGATTGCTGATTCAAGTGG+GGG | + | chr2_3:47211241-47211260 | None:intergenic | 40.0% |
| !! | CATGATTGCTGATTCAAGTG+GGG | + | chr2_3:47211242-47211261 | None:intergenic | 40.0% |
| !! | GTCATGATTGCTGATTCAAG+TGG | + | chr2_3:47211244-47211263 | None:intergenic | 40.0% |
| TACAGTGATTATGGGAAGCA+CGG | + | chr2_3:47211284-47211303 | None:intergenic | 40.0% | |
| CAAAACACTGCAGAGAAGAT+TGG | - | chr2_3:47211509-47211528 | Msa0295010:intron | 40.0% | |
| ! | TGGTATCTGAAACATCATCC+GGG | - | chr2_3:47211529-47211548 | Msa0295010:intron | 40.0% |
| AGCTTGAGAGAGAAGTTAAG+TGG | + | chr2_3:47211692-47211711 | None:intergenic | 40.0% | |
| AGTCGGCTACATCATAAAAC+AGG | + | chr2_3:47211770-47211789 | None:intergenic | 40.0% | |
| GCATCGTAAGTCGATTGTAT+AGG | - | chr2_3:47211852-47211871 | Msa0295010:intron | 40.0% | |
| ATTCACCAACTCCTCCAAAT+GGG | + | chr2_3:47212115-47212134 | None:intergenic | 40.0% | |
| TGTGGATTTGGCAAGTATCA+TGG | - | chr2_3:47212134-47212153 | Msa0295010:CDS | 40.0% | |
| GTGGATTTGGCAAGTATCAT+GGG | - | chr2_3:47212135-47212154 | Msa0295010:CDS | 40.0% | |
| ATTCAGTCACCATAAAGCTG+TGG | - | chr2_3:47212175-47212194 | Msa0295010:intron | 40.0% | |
| TGGTAACATGGAGTTCTCAG+TGG | - | chr2_3:47208010-47208029 | Msa0295010:three_prime_UTR | 45.0% | |
| AAGGCCCTCAAGAAGGATTT+AGG | - | chr2_3:47208164-47208183 | Msa0295010:CDS | 45.0% | |
| AGGCCCTCAAGAAGGATTTA+GGG | - | chr2_3:47208165-47208184 | Msa0295010:CDS | 45.0% | |
| GCTTCCCTAAATCCTTCTTG+AGG | + | chr2_3:47208172-47208191 | None:intergenic | 45.0% | |
| GAAATTGTTGCTGAGCCTCT+TGG | - | chr2_3:47208583-47208602 | Msa0295010:intron | 45.0% | |
| GTGTCCTTGGAGCCATTAAT+TGG | - | chr2_3:47208756-47208775 | Msa0295010:intron | 45.0% | |
| GCAGCTATGGCTCCAATTAA+TGG | + | chr2_3:47208771-47208790 | None:intergenic | 45.0% | |
| TTAATTGGAGCCATAGCTGC+TGG | - | chr2_3:47208771-47208790 | Msa0295010:intron | 45.0% | |
| TGCAACATTTCCAGCAGCTA+TGG | + | chr2_3:47208784-47208803 | None:intergenic | 45.0% | |
| AGGAGTTGCTCTCCAATTTC+TGG | + | chr2_3:47208909-47208928 | None:intergenic | 45.0% | |
| ! | TATTAGGAAGTGCACGAGTG+GGG | - | chr2_3:47209059-47209078 | Msa0295010:intron | 45.0% |
| GATTGTTATGTCTGCAGCAG+TGG | - | chr2_3:47209084-47209103 | Msa0295010:intron | 45.0% | |
| GCATCTCACTCCTATAACTC+TGG | - | chr2_3:47209108-47209127 | Msa0295010:intron | 45.0% | |
| !! | CCTATAACTCTGGAGTTAGG+GGG | - | chr2_3:47209118-47209137 | Msa0295010:intron | 45.0% |
| GAAAGTGAATCAACCAGTGC+TGG | + | chr2_3:47209151-47209170 | None:intergenic | 45.0% | |
| TTCAACTTCTTGGGACAGAG+AGG | - | chr2_3:47209168-47209187 | Msa0295010:intron | 45.0% | |
| CGGTGTGCAACCTAACAATT+CGG | + | chr2_3:47209367-47209386 | None:intergenic | 45.0% | |
| ! | GGCTGTGAAACGAATTTTGG+TGG | - | chr2_3:47209676-47209695 | Msa0295010:intron | 45.0% |
| CAATTCGAGGCACAATTGGT+TGG | + | chr2_3:47210420-47210439 | None:intergenic | 45.0% | |
| ! | AGTTCTCAGGAGGGATGTTT+TGG | + | chr2_3:47210879-47210898 | None:intergenic | 45.0% |
| GGGGGATCCAGTAATATTGT+TGG | + | chr2_3:47211223-47211242 | None:intergenic | 45.0% | |
| ! | ACAGTGATTATGGGAAGCAC+GGG | + | chr2_3:47211283-47211302 | None:intergenic | 45.0% |
| CAGGTGGAGAAGATTGAAGA+CGG | - | chr2_3:47211429-47211448 | Msa0295010:intron | 45.0% | |
| !! | ATAGCGGATACCATCCCATT+TGG | - | chr2_3:47212098-47212117 | Msa0295010:intron | 45.0% |
| CATTCACCAACTCCTCCAAA+TGG | + | chr2_3:47212116-47212135 | None:intergenic | 45.0% | |
| !! | TTTGGAGGAGTTGGTGAATG+TGG | - | chr2_3:47212116-47212135 | Msa0295010:CDS | 45.0% |
| !! | GGAGTTGGTGAATGTGGATT+TGG | - | chr2_3:47212122-47212141 | Msa0295010:CDS | 45.0% |
| TTCTCCTAGCCACAGCTTTA+TGG | + | chr2_3:47212187-47212206 | None:intergenic | 45.0% | |
| ! | TTTGGTTCAGGTTTCCTCCA+TGG | - | chr2_3:47212222-47212241 | Msa0295010:intron | 45.0% |
| !!! | ATATTAATAAAACTTTTTTT+AGG | + | chr2_3:47209460-47209479 | None:intergenic | 5.0% |
| !! | TTAAAAAAATAAATAAAATC+GGG | + | chr2_3:47209617-47209636 | None:intergenic | 5.0% |
| !! | TAAAATTTAAATTTATTCAA+AGG | - | chr2_3:47210931-47210950 | Msa0295010:intron | 5.0% |
| GGAGTTCTCAGTGGAAGCTT+TGG | - | chr2_3:47208019-47208038 | Msa0295010:three_prime_UTR | 50.0% | |
| GATCTTGAAGGCCCTCAAGA+AGG | - | chr2_3:47208157-47208176 | Msa0295010:CDS | 50.0% | |
| GGCTCCAATTAATGGCTCCA+AGG | + | chr2_3:47208763-47208782 | None:intergenic | 50.0% | |
| !! | GGGCCAACTCTGAAGGTTTT+AGG | + | chr2_3:47208809-47208828 | None:intergenic | 50.0% |
| CCCCCTAACTCCAGAGTTAT+AGG | + | chr2_3:47209121-47209140 | None:intergenic | 50.0% | |
| ACCATCCCATTTGGAGGAGT+TGG | - | chr2_3:47212107-47212126 | Msa0295010:intron | 50.0% | |
| ACCAACTCCTCCAAATGGGA+TGG | + | chr2_3:47212111-47212130 | None:intergenic | 50.0% | |
| GTCACCATAAAGCTGTGGCT+AGG | - | chr2_3:47212180-47212199 | Msa0295010:intron | 50.0% | |
| GAAGTAGGGGCCAACTCTGA+AGG | + | chr2_3:47208816-47208835 | None:intergenic | 55.0% | |
| AGGGGGAAAATGTCCAGCAC+TGG | - | chr2_3:47209135-47209154 | Msa0295010:intron | 55.0% | |
| GCAAAGTATGGGGCTTGTGC+AGG | - | chr2_3:47209698-47209717 | Msa0295010:intron | 55.0% | |
| GCGGATACCATCCCATTTGG+AGG | - | chr2_3:47212101-47212120 | Msa0295010:intron | 55.0% | |
| ! | TAGGAAGTGCACGAGTGGGG+AGG | - | chr2_3:47209062-47209081 | Msa0295010:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 47208004 | 47212501 | 47208004 | ID=Msa0295010;Name=Msa0295010 |
| chr2_3 | mRNA | 47208004 | 47212501 | 47208004 | ID=Msa0295010-mRNA-1;Parent=Msa0295010;Name=Msa0295010-mRNA-1;_AED=0.11;_eAED=0.11;_QI=13|1|1|1|1|1|10|140|494 |
| chr2_3 | exon | 47208004 | 47208410 | 47208004 | ID=Msa0295010-mRNA-1:exon:14773;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47208924 | 47209073 | 47208924 | ID=Msa0295010-mRNA-1:exon:14772;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47209205 | 47209295 | 47209205 | ID=Msa0295010-mRNA-1:exon:14771;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47210458 | 47210630 | 47210458 | ID=Msa0295010-mRNA-1:exon:14770;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47210727 | 47210831 | 47210727 | ID=Msa0295010-mRNA-1:exon:14769;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47211316 | 47211440 | 47211316 | ID=Msa0295010-mRNA-1:exon:14768;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47211545 | 47211751 | 47211545 | ID=Msa0295010-mRNA-1:exon:14767;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47211862 | 47211958 | 47211862 | ID=Msa0295010-mRNA-1:exon:14766;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47212111 | 47212179 | 47212111 | ID=Msa0295010-mRNA-1:exon:14765;Parent=Msa0295010-mRNA-1 |
| chr2_3 | exon | 47212288 | 47212501 | 47212288 | ID=Msa0295010-mRNA-1:exon:14764;Parent=Msa0295010-mRNA-1 |
| chr2_3 | five_prime_UTR | 47212489 | 47212501 | 47212489 | ID=Msa0295010-mRNA-1:five_prime_utr;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47212288 | 47212488 | 47212288 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47212111 | 47212179 | 47212111 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47211862 | 47211958 | 47211862 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47211545 | 47211751 | 47211545 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47211316 | 47211440 | 47211316 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47210727 | 47210831 | 47210727 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47210458 | 47210630 | 47210458 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47209205 | 47209295 | 47209205 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47208924 | 47209073 | 47208924 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | CDS | 47208144 | 47208410 | 47208144 | ID=Msa0295010-mRNA-1:cds;Parent=Msa0295010-mRNA-1 |
| chr2_3 | three_prime_UTR | 47208004 | 47208143 | 47208004 | ID=Msa0295010-mRNA-1:three_prime_utr;Parent=Msa0295010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
