Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339990 | XP_003597427.2 | 96.964 | 494 | 15 | 0 | 1 | 494 | 1 | 494 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339990 | sp|Q70E96|AL3F1_ARATH | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223480 | Msa0339990 | 0.855740 | 5.152126e-62 | -8.615850e-47 |
| Msa0264600 | Msa0339990 | 0.998418 | 1.676208e-264 | -8.615850e-47 |
| Msa0295010 | Msa0339990 | 0.894503 | 2.319024e-75 | -8.615850e-47 |
| Msa0339990 | Msa0601110 | 0.809619 | 1.729918e-50 | -8.615850e-47 |
| Msa0339990 | Msa0601120 | 0.806423 | 8.284696e-50 | -8.615850e-47 |
| Msa0339990 | Msa0641620 | 0.812433 | 4.251250e-51 | -8.615850e-47 |
| Msa0339990 | Msa0680150 | 0.824049 | 9.964796e-54 | -8.615850e-47 |
| Msa0339990 | Msa0722940 | 0.802650 | 5.073478e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339990 | MtrunA17_Chr2g0328781 | 96.964 | 494 | 15 | 0 | 1 | 494 | 13 | 506 | 0.0 | 984 |
| Msa0339990 | MtrunA17_Chr4g0032441 | 71.855 | 469 | 131 | 1 | 5 | 472 | 1 | 469 | 0.0 | 672 |
| Msa0339990 | MtrunA17_Chr8g0372381 | 56.458 | 480 | 202 | 2 | 8 | 483 | 9 | 485 | 0.0 | 578 |
| Msa0339990 | MtrunA17_Chr8g0384741 | 47.447 | 470 | 244 | 1 | 12 | 481 | 73 | 539 | 5.35e-158 | 459 |
| Msa0339990 | MtrunA17_Chr3g0124811 | 45.929 | 479 | 256 | 1 | 3 | 481 | 13 | 488 | 1.60e-157 | 456 |
| Msa0339990 | MtrunA17_Chr1g0159811 | 47.470 | 415 | 215 | 1 | 3 | 417 | 11 | 422 | 5.28e-135 | 399 |
| Msa0339990 | MtrunA17_Chr3g0129271 | 57.068 | 191 | 82 | 0 | 175 | 365 | 31 | 221 | 8.06e-72 | 229 |
| Msa0339990 | MtrunA17_Chr2g0294411 | 26.966 | 445 | 294 | 10 | 29 | 453 | 102 | 535 | 1.92e-40 | 153 |
| Msa0339990 | MtrunA17_Chr2g0310091 | 28.775 | 351 | 238 | 9 | 104 | 448 | 193 | 537 | 1.11e-39 | 150 |
| Msa0339990 | MtrunA17_Chr4g0009161 | 62.857 | 105 | 38 | 1 | 175 | 278 | 116 | 220 | 5.58e-35 | 130 |
| Msa0339990 | MtrunA17_Chr3g0118121 | 27.521 | 476 | 301 | 15 | 1 | 454 | 47 | 500 | 4.63e-33 | 131 |
| Msa0339990 | MtrunA17_Chr3g0118081 | 26.598 | 485 | 294 | 13 | 1 | 454 | 77 | 530 | 1.26e-32 | 130 |
| Msa0339990 | MtrunA17_Chr4g0059521 | 28.477 | 453 | 291 | 14 | 23 | 454 | 60 | 500 | 3.26e-32 | 129 |
| Msa0339990 | MtrunA17_Chr4g0059221 | 27.876 | 452 | 299 | 14 | 2 | 440 | 97 | 534 | 2.84e-30 | 124 |
| Msa0339990 | MtrunA17_Chr6g0485301 | 29.817 | 436 | 260 | 18 | 39 | 456 | 94 | 501 | 1.45e-29 | 121 |
| Msa0339990 | MtrunA17_Chr8g0365221 | 28.285 | 449 | 293 | 15 | 6 | 440 | 98 | 531 | 1.37e-28 | 119 |
| Msa0339990 | MtrunA17_Chr8g0390651 | 26.439 | 469 | 309 | 13 | 2 | 456 | 56 | 502 | 6.47e-28 | 116 |
| Msa0339990 | MtrunA17_Chr3g0117861 | 26.562 | 448 | 302 | 13 | 6 | 440 | 99 | 532 | 3.51e-27 | 114 |
| Msa0339990 | MtrunA17_Chr8g0390631 | 27.840 | 449 | 270 | 19 | 30 | 456 | 77 | 493 | 4.51e-27 | 114 |
| Msa0339990 | MtrunA17_Chr6g0485311 | 27.962 | 422 | 271 | 16 | 39 | 445 | 92 | 495 | 6.38e-26 | 110 |
| Msa0339990 | MtrunA17_Chr4g0074171 | 26.966 | 445 | 281 | 15 | 2 | 423 | 44 | 467 | 3.11e-25 | 108 |
| Msa0339990 | MtrunA17_Chr1g0149961 | 28.923 | 325 | 207 | 10 | 108 | 423 | 158 | 467 | 2.72e-24 | 105 |
| Msa0339990 | MtrunA17_Chr2g0300801 | 25.779 | 353 | 241 | 9 | 105 | 447 | 152 | 493 | 1.04e-18 | 89.0 |
| Msa0339990 | MtrunA17_Chr2g0279751 | 27.097 | 310 | 204 | 10 | 105 | 401 | 147 | 447 | 1.37e-17 | 85.5 |
| Msa0339990 | MtrunA17_Chr4g0049641 | 26.774 | 310 | 205 | 10 | 105 | 401 | 174 | 474 | 3.53e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339990 | AT4G36250.1 | 52.795 | 483 | 228 | 0 | 1 | 483 | 1 | 483 | 0.0 | 564 |
| Msa0339990 | AT1G44170.1 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 4.13e-162 | 468 |
| Msa0339990 | AT1G44170.2 | 48.195 | 471 | 241 | 1 | 12 | 482 | 16 | 483 | 4.13e-162 | 468 |
| Msa0339990 | AT4G34240.4 | 49.469 | 471 | 235 | 1 | 12 | 482 | 64 | 531 | 1.14e-157 | 459 |
| Msa0339990 | AT4G34240.1 | 49.469 | 471 | 235 | 1 | 12 | 482 | 79 | 546 | 2.36e-157 | 458 |
| Msa0339990 | AT1G44170.3 | 49.761 | 418 | 207 | 1 | 65 | 482 | 6 | 420 | 8.65e-149 | 432 |
| Msa0339990 | AT4G34240.3 | 51.478 | 406 | 194 | 1 | 77 | 482 | 2 | 404 | 1.89e-141 | 413 |
| Msa0339990 | AT4G34240.2 | 49.206 | 315 | 157 | 1 | 12 | 326 | 79 | 390 | 1.02e-96 | 298 |
| Msa0339990 | AT3G66658.2 | 27.406 | 478 | 312 | 11 | 23 | 471 | 96 | 567 | 5.63e-47 | 172 |
| Msa0339990 | AT3G66658.1 | 27.477 | 444 | 296 | 9 | 23 | 446 | 96 | 533 | 4.13e-46 | 169 |
| Msa0339990 | AT1G79440.1 | 30.460 | 348 | 222 | 9 | 104 | 441 | 184 | 521 | 1.17e-40 | 153 |
| Msa0339990 | AT1G74920.2 | 29.452 | 438 | 285 | 14 | 30 | 454 | 69 | 495 | 2.05e-35 | 138 |
| Msa0339990 | AT1G74920.1 | 29.452 | 438 | 285 | 14 | 30 | 454 | 74 | 500 | 2.87e-35 | 138 |
| Msa0339990 | AT3G48170.1 | 26.526 | 475 | 304 | 16 | 6 | 454 | 45 | 500 | 1.70e-30 | 124 |
| Msa0339990 | AT1G23800.1 | 27.434 | 452 | 301 | 14 | 2 | 440 | 87 | 524 | 3.56e-30 | 124 |
| Msa0339990 | AT3G48000.1 | 27.212 | 452 | 302 | 13 | 2 | 440 | 91 | 528 | 4.57e-28 | 117 |
| Msa0339990 | AT3G24503.1 | 27.869 | 427 | 274 | 18 | 30 | 440 | 83 | 491 | 1.80e-25 | 109 |
| Msa0339990 | AT2G24270.2 | 28.615 | 325 | 208 | 10 | 108 | 423 | 198 | 507 | 2.29e-23 | 103 |
| Msa0339990 | AT2G24270.3 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.09e-23 | 102 |
| Msa0339990 | AT2G24270.1 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.09e-23 | 102 |
| Msa0339990 | AT2G24270.4 | 28.615 | 325 | 208 | 10 | 108 | 423 | 158 | 467 | 4.42e-23 | 102 |
| Msa0339990 | AT1G54100.2 | 26.286 | 350 | 237 | 9 | 108 | 447 | 154 | 492 | 3.96e-18 | 87.4 |
| Msa0339990 | AT1G54100.1 | 26.286 | 350 | 237 | 9 | 108 | 447 | 154 | 492 | 3.96e-18 | 87.4 |
| Msa0339990 | AT1G23800.2 | 28.213 | 319 | 203 | 13 | 2 | 307 | 87 | 392 | 2.64e-15 | 78.2 |
| Msa0339990 | AT2G14170.2 | 23.288 | 438 | 298 | 12 | 29 | 443 | 58 | 480 | 3.24e-12 | 68.9 |
| Msa0339990 | AT2G14170.1 | 23.288 | 438 | 298 | 12 | 29 | 443 | 167 | 589 | 4.09e-12 | 68.9 |
| Msa0339990 | AT2G14170.3 | 23.919 | 393 | 272 | 10 | 29 | 404 | 167 | 549 | 2.43e-11 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTATGTAGATTTA+TGG | 0.118638 | 2_4:+61298340 | Msa0339990:intron |
| CACTGTTCTACCAAATTATT+TGG | 0.132543 | 2_4:+61295999 | Msa0339990:CDS |
| TATTGTTATTCTTTATTTCT+AGG | 0.144314 | 2_4:+61299559 | Msa0339990:three_prime_UTR |
| CACTTGAAAGTAGTGCTATT+TGG | 0.163353 | 2_4:-61295707 | None:intergenic |
| TTCTCCTAGCCACAGCTTTA+TGG | 0.164740 | 2_4:-61299328 | None:intergenic |
| AAGGCCCTCAAGAAGGATTT+AGG | 0.176467 | 2_4:+61295308 | Msa0339990:CDS |
| AGGAGTTGCTCTCCAATTTC+TGG | 0.180506 | 2_4:-61296054 | None:intergenic |
| CAATAATCAGCTATCCTTAT+TGG | 0.190072 | 2_4:-61299541 | None:intergenic |
| CCATTATTGTCCAAATAATT+TGG | 0.194174 | 2_4:-61296009 | None:intergenic |
| TTGATTCACTTTCAACTTCT+TGG | 0.229573 | 2_4:+61296306 | Msa0339990:CDS |
| TACTTATCTTACAGTGATAA+TGG | 0.233953 | 2_4:-61298435 | None:intergenic |
| ACTTGAAAGTAGTGCTATTT+GGG | 0.262171 | 2_4:-61295706 | None:intergenic |
| CCAAATTATTTGGACAATAA+TGG | 0.270029 | 2_4:+61296009 | Msa0339990:CDS |
| TATGGAACCAACAATATTAC+TGG | 0.285040 | 2_4:+61298358 | Msa0339990:CDS |
| GCATAAATTGCTAGAGGTTT+AGG | 0.288414 | 2_4:-61298620 | None:intergenic |
| TTTACAACTATCATCCAATA+AGG | 0.295369 | 2_4:+61299527 | Msa0339990:three_prime_UTR |
| GATGGCTGTGAAACGAATTT+TGG | 0.298929 | 2_4:+61296818 | Msa0339990:intron |
| GTGTCCTTGGAGCCATTAAT+TGG | 0.298989 | 2_4:+61295904 | Msa0339990:CDS |
| ATTGAAGGTGGACCAGAAAT+TGG | 0.299642 | 2_4:+61296042 | Msa0339990:CDS |
| GTTAAAGAAATCCATTGATT+TGG | 0.305202 | 2_4:+61295483 | Msa0339990:CDS |
| AAGAACATGAGAAAGTATTA+TGG | 0.305368 | 2_4:+61295197 | Msa0339990:CDS |
| GCAGCTATGGCTCCAATTAA+TGG | 0.306017 | 2_4:-61295916 | None:intergenic |
| ACTCCTATAACTCTGGAGTT+AGG | 0.328012 | 2_4:+61296263 | Msa0339990:CDS |
| AAAAGCACACATTAGAATCT+TGG | 0.333702 | 2_4:-61299601 | None:intergenic |
| GAGGAGACTCTTGATTCTAT+TGG | 0.336102 | 2_4:-61297111 | None:intergenic |
| TGTAAGCTTCTTCAAGTAGT+TGG | 0.339552 | 2_4:-61299403 | None:intergenic |
| TGATTCACTTTCAACTTCTT+GGG | 0.343615 | 2_4:+61296307 | Msa0339990:CDS |
| TGGAGAGAATCACAACTAAA+AGG | 0.351972 | 2_4:+61295245 | Msa0339990:CDS |
| GGAGTTCTCAGTGGAAGCTT+TGG | 0.372513 | 2_4:+61295163 | Msa0339990:CDS |
| CTCCTATAACTCTGGAGTTA+GGG | 0.372962 | 2_4:+61296264 | Msa0339990:CDS |
| TTCAAAACGTTCATTATATG+AGG | 0.382788 | 2_4:+61299472 | Msa0339990:CDS |
| GGTGCATCAGTCTCTAATAT+TGG | 0.389938 | 2_4:+61295134 | None:intergenic |
| ACCACCGATTCTTTGACATT+AGG | 0.390930 | 2_4:-61297140 | None:intergenic |
| AGGCCCTCAAGAAGGATTTA+GGG | 0.400687 | 2_4:+61295309 | Msa0339990:CDS |
| GGACTTTATTGCCAAATCAA+TGG | 0.403173 | 2_4:-61295494 | None:intergenic |
| AGAACATGAGAAAGTATTAT+GGG | 0.405722 | 2_4:+61295198 | Msa0339990:CDS |
| ACTTATCTTACAGTGATAAT+GGG | 0.411701 | 2_4:-61298434 | None:intergenic |
| GGAGTTGGTGAATGTGGATT+TGG | 0.413532 | 2_4:+61299266 | Msa0339990:CDS |
| ACCATCCCATTTGGAGGAGT+TGG | 0.443845 | 2_4:+61299251 | Msa0339990:CDS |
| ATAGCGGATACCATCCCATT+TGG | 0.449228 | 2_4:+61299242 | Msa0339990:CDS |
| AACAATCCTTGCAATGCTGT+TGG | 0.454731 | 2_4:-61297075 | None:intergenic |
| ATTTAATGATGCAATTCTAC+AGG | 0.457393 | 2_4:+61298706 | Msa0339990:CDS |
| GAAATTGTTGCTGAGCCTCT+TGG | 0.457989 | 2_4:+61295732 | Msa0339990:CDS |
| TTTGGTTCAGGTTTCCTCCA+TGG | 0.459950 | 2_4:+61299366 | Msa0339990:CDS |
| CTTCCCTAAATCCTTCTTGA+GGG | 0.460635 | 2_4:-61295312 | None:intergenic |
| CATTCACCAACTCCTCCAAA+TGG | 0.461138 | 2_4:-61299257 | None:intergenic |
| ATCATGACAGAAGAAATCTT+TGG | 0.467373 | 2_4:+61298401 | Msa0339990:CDS |
| CAAAACACTGCAGAGAAGAT+TGG | 0.468898 | 2_4:+61298655 | Msa0339990:CDS |
| GCATCTCACTCCTATAACTC+TGG | 0.477082 | 2_4:+61296256 | Msa0339990:CDS |
| TTGGTATCTGAAACATCATC+CGG | 0.480961 | 2_4:+61298674 | Msa0339990:CDS |
| TGGAACTTGTTAAGATTCCA+TGG | 0.484735 | 2_4:-61299383 | None:intergenic |
| GCTTACAATTTAAACTACAT+TGG | 0.487149 | 2_4:+61299419 | Msa0339990:CDS |
| TAGGTGGAGTTAATGAAGGA+AGG | 0.488749 | 2_4:+61297017 | Msa0339990:intron |
| GCAAAGTATGGGGCTTGTGC+AGG | 0.494839 | 2_4:+61296843 | Msa0339990:CDS |
| TGCAACATTTCCAGCAGCTA+TGG | 0.497942 | 2_4:-61295929 | None:intergenic |
| AATTCCATGATGAGATTATG+AGG | 0.500503 | 2_4:-61295761 | None:intergenic |
| AAAATGGATGGCTGGTAAAG+AGG | 0.500707 | 2_4:+61295522 | Msa0339990:CDS |
| TCTTTAGGTGGAGTTAATGA+AGG | 0.502645 | 2_4:+61297013 | Msa0339990:intron |
| AATGGCATTAAGATCATTGA+AGG | 0.505160 | 2_4:+61296027 | Msa0339990:CDS |
| GCTTCCCTAAATCCTTCTTG+AGG | 0.505953 | 2_4:-61295313 | None:intergenic |
| AGGTGGAGTTAATGAAGGAA+GGG | 0.506548 | 2_4:+61297018 | Msa0339990:intron |
| TGTGGATTTGGCAAGTATCA+TGG | 0.509305 | 2_4:+61299278 | Msa0339990:CDS |
| CTAGAAGAGAAGAAGAAGTA+GGG | 0.517439 | 2_4:-61295975 | None:intergenic |
| ATGAGAAAGTATTATGGGAG+TGG | 0.517718 | 2_4:+61295203 | Msa0339990:CDS |
| GCTAGAAGAGAAGAAGAAGT+AGG | 0.519054 | 2_4:-61295976 | None:intergenic |
| TGAACCTAATGTCAAAGAAT+CGG | 0.526059 | 2_4:+61297136 | Msa0339990:CDS |
| GAAAGTGAATCAACCAGTGC+TGG | 0.531970 | 2_4:-61296296 | None:intergenic |
| GATTGTTATGTCTGCAGCAG+TGG | 0.533250 | 2_4:+61296232 | Msa0339990:CDS |
| ATTCACCAACTCCTCCAAAT+GGG | 0.535804 | 2_4:-61299256 | None:intergenic |
| TTAATTGGAGCCATAGCTGC+TGG | 0.536986 | 2_4:+61295919 | Msa0339990:CDS |
| GTGGATTTGGCAAGTATCAT+GGG | 0.538798 | 2_4:+61299279 | Msa0339990:CDS |
| ATCATTAAATACAATGCTCC+CGG | 0.543496 | 2_4:-61298693 | None:intergenic |
| TTTGGAGGAGTTGGTGAATG+TGG | 0.544032 | 2_4:+61299260 | Msa0339990:CDS |
| AAATGAGGAAGAAATCTTGA+AGG | 0.544513 | 2_4:+61295289 | Msa0339990:CDS |
| TCCTATAACTCTGGAGTTAG+GGG | 0.551937 | 2_4:+61296265 | Msa0339990:CDS |
| TAACTTTGTCAAAGAAAATG+AGG | 0.553225 | 2_4:+61295274 | Msa0339990:CDS |
| AATCTTGAAGGCCCTCAAGA+AGG | 0.558764 | 2_4:+61295301 | Msa0339990:CDS |
| GCGGATACCATCCCATTTGG+AGG | 0.558921 | 2_4:+61299245 | Msa0339990:CDS |
| TACAGTGATAATGGGAAGCA+CGG | 0.561570 | 2_4:-61298426 | None:intergenic |
| GTCATGATTGCTGATTCAAG+TGG | 0.562929 | 2_4:-61298386 | None:intergenic |
| AGTCCTAAAACCTTCAGAGT+TGG | 0.563574 | 2_4:+61295951 | Msa0339990:CDS |
| GAAGTAGGGGCCAACTCTGA+AGG | 0.570056 | 2_4:-61295961 | None:intergenic |
| TAGTCCTCATAATCTCATCA+TGG | 0.574613 | 2_4:+61295757 | Msa0339990:CDS |
| GGCTCCAATTAATGGCTCCA+AGG | 0.575676 | 2_4:-61295908 | None:intergenic |
| GTGAAAGCATAAATTGCTAG+AGG | 0.575786 | 2_4:-61298626 | None:intergenic |
| ATATTAGGAAGTGCACGAGT+GGG | 0.582326 | 2_4:+61296206 | Msa0339990:intron |
| AGTCTCTAATATTGGTGACA+TGG | 0.584206 | 2_4:+61295142 | None:intergenic |
| TTTAGGGAAGCATCATGTTG+AGG | 0.599307 | 2_4:+61295325 | Msa0339990:CDS |
| TATATTAGGAAGTGCACGAG+TGG | 0.599974 | 2_4:+61296205 | Msa0339990:intron |
| AAAGAGCTTCAGTTCCACAT+TGG | 0.608853 | 2_4:+61296902 | Msa0339990:CDS |
| ACCAACTCCTCCAAATGGGA+TGG | 0.608963 | 2_4:-61299252 | None:intergenic |
| TCATGATTGCTGATTCAAGT+GGG | 0.615088 | 2_4:-61298385 | None:intergenic |
| GGCATTAAGATCATTGAAGG+TGG | 0.617998 | 2_4:+61296030 | Msa0339990:CDS |
| ACCTAATGTCAAAGAATCGG+TGG | 0.620390 | 2_4:+61297139 | Msa0339990:CDS |
| TAGAAGAGAAGAAGAAGTAG+GGG | 0.625377 | 2_4:-61295974 | None:intergenic |
| TAGGAAGTGCACGAGTGGGG+AGG | 0.625912 | 2_4:+61296210 | Msa0339990:intron |
| GTCACCATAAAGCTGTGGCT+AGG | 0.633443 | 2_4:+61299324 | Msa0339990:CDS |
| ACAGTGATAATGGGAAGCAC+GGG | 0.640005 | 2_4:-61298425 | None:intergenic |
| TGGTATCTGAAACATCATCC+GGG | 0.645652 | 2_4:+61298675 | Msa0339990:CDS |
| TATTAGGAAGTGCACGAGTG+GGG | 0.646738 | 2_4:+61296207 | Msa0339990:intron |
| CAGGTGGAGAAGATTGAAGA+CGG | 0.650633 | 2_4:+61298575 | Msa0339990:intron |
| TTCAACTTCTTGGGACAGAG+AGG | 0.650826 | 2_4:+61296316 | Msa0339990:CDS |
| CAAATAATTTGGTAGAACAG+TGG | 0.655707 | 2_4:-61295998 | None:intergenic |
| ATGATTGCTGATTCAAGTGG+GGG | 0.665274 | 2_4:-61298383 | None:intergenic |
| CTTGAAAGTAGTGCTATTTG+GGG | 0.666143 | 2_4:-61295705 | None:intergenic |
| CCTATAACTCTGGAGTTAGG+GGG | 0.670137 | 2_4:+61296266 | Msa0339990:CDS |
| TGGTGACATGGAGTTCTCAG+TGG | 0.677211 | 2_4:+61295154 | Msa0339990:exon |
| CATGATTGCTGATTCAAGTG+GGG | 0.687119 | 2_4:-61298384 | None:intergenic |
| CTTTGACATTAGGTTCACTG+AGG | 0.691733 | 2_4:-61297130 | None:intergenic |
| ATTCAGTCACCATAAAGCTG+TGG | 0.694399 | 2_4:+61299319 | Msa0339990:CDS |
| ATTATGAGGACTAGACCAAG+AGG | 0.704548 | 2_4:-61295747 | None:intergenic |
| AACTTGTTAAGATTCCATGG+AGG | 0.758325 | 2_4:-61299380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAAAAAATAAATAAAAT+CGG | - | chr2_4:61296763-61296782 | None:intergenic | 0.0% |
| !! | TTTCAATAAACTAAATATAA+TGG | - | chr2_4:61295607-61295626 | None:intergenic | 10.0% |
| !! | AAGTTTATTAATATAAACTA+AGG | + | chr2_4:61296611-61296630 | Msa0339990:intron | 10.0% |
| !! | TAAAAAAATAAATAAAATCG+GGG | - | chr2_4:61296761-61296780 | None:intergenic | 10.0% |
| !!! | AATAAGGTATTAAAAAAAAA+AGG | - | chr2_4:61297846-61297865 | None:intergenic | 10.0% |
| !!! | ATGTATATTTCTGTTTAATT+TGG | + | chr2_4:61295406-61295425 | Msa0339990:intron | 15.0% |
| !! | GCAAATTATATATATACATA+TGG | - | chr2_4:61295453-61295472 | None:intergenic | 15.0% |
| !!! | TATGTATATATATAATTTGC+AGG | + | chr2_4:61295453-61295472 | Msa0339990:intron | 15.0% |
| !!! | TTTAATTTCATGTAAAAGTA+TGG | - | chr2_4:61295645-61295664 | None:intergenic | 15.0% |
| !! | CCTATATTAATAAAACTTAA+TGG | - | chr2_4:61296472-61296491 | None:intergenic | 15.0% |
| !!! | CCATTAAGTTTTATTAATAT+AGG | + | chr2_4:61296469-61296488 | Msa0339990:intron | 15.0% |
| !! | ATTCCCAAATAAATATTATT+TGG | + | chr2_4:61297405-61297424 | Msa0339990:intron | 15.0% |
| !! | TGTCCAAATAATATTTATTT+GGG | - | chr2_4:61297411-61297430 | None:intergenic | 15.0% |
| !! | CAAAATCAAGAAAAAATTAA+AGG | - | chr2_4:61297507-61297526 | None:intergenic | 15.0% |
| !!! | GTTAACTACTTTTTTTTAAA+GGG | - | chr2_4:61297956-61297975 | None:intergenic | 15.0% |
| !!! | AGTTAACTACTTTTTTTTAA+AGG | - | chr2_4:61297957-61297976 | None:intergenic | 15.0% |
| !!! | AATTTATTCAAAGGTATTTT+AGG | + | chr2_4:61298084-61298103 | Msa0339990:intron | 15.0% |
| !!! | ATGATTTTTCTTTCTTTTAA+CGG | + | chr2_4:61298962-61298981 | Msa0339990:intron | 15.0% |
| !!! | AAATAGTCTTAAAAAAAACT+TGG | - | chr2_4:61299026-61299045 | None:intergenic | 15.0% |
| !!! | TATTGTTATTCTTTATTTCT+AGG | + | chr2_4:61299559-61299578 | Msa0339990:three_prime_UTR | 15.0% |
| !! | ATATATATACATATGGTCTA+TGG | - | chr2_4:61295446-61295465 | None:intergenic | 20.0% |
| !!! | TATATATATAATTTGCAGGT+TGG | + | chr2_4:61295457-61295476 | Msa0339990:intron | 20.0% |
| !!! | CTGTTAAGTTGAAAATAATA+AGG | - | chr2_4:61295676-61295695 | None:intergenic | 20.0% |
| !!! | CTTATTATTTTCAACTTAAC+AGG | + | chr2_4:61295674-61295693 | Msa0339990:intron | 20.0% |
| !! | TTGTAATGATCCAATATATT+AGG | + | chr2_4:61296191-61296210 | Msa0339990:intron | 20.0% |
| !!! | AAAGAGTTTAAATCTTTTCT+AGG | + | chr2_4:61296682-61296701 | Msa0339990:intron | 20.0% |
| !! | GTGTCCAAATAATATTTATT+TGG | - | chr2_4:61297412-61297431 | None:intergenic | 20.0% |
| !!! | TGTGACCAAATATTTTTATT+TGG | + | chr2_4:61297531-61297550 | Msa0339990:intron | 20.0% |
| !!! | GTGACCAAATATTTTTATTT+GGG | + | chr2_4:61297532-61297551 | Msa0339990:intron | 20.0% |
| !! | CAAACCCAAATAAAAATATT+TGG | - | chr2_4:61297539-61297558 | None:intergenic | 20.0% |
| !!! | TTTTTCCTCTTAAGAATTTT+AGG | + | chr2_4:61297698-61297717 | Msa0339990:intron | 20.0% |
| !!! | ATGTTTATTATTTGAAGTCA+AGG | - | chr2_4:61297754-61297773 | None:intergenic | 20.0% |
| !! | TTGATTGCTTATATATGAAA+CGG | - | chr2_4:61297921-61297940 | None:intergenic | 20.0% |
| !! | CAAAAACTCTATAATGTTTA+TGG | - | chr2_4:61298050-61298069 | None:intergenic | 20.0% |
| !!! | AGTTGTTTTTTCTTTTTCTT+TGG | - | chr2_4:61298150-61298169 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTACATAGATCT+CGG | - | chr2_4:61298209-61298228 | None:intergenic | 20.0% |
| !!! | GCTTTTGAAAACATTTTTTT+AGG | - | chr2_4:61298251-61298270 | None:intergenic | 20.0% |
| !! | ATAATCATGTAAGGAAAAAT+TGG | - | chr2_4:61298293-61298312 | None:intergenic | 20.0% |
| !! | ATCATAAAGATAATCATGTA+AGG | - | chr2_4:61298302-61298321 | None:intergenic | 20.0% |
| !! | TGAAATCTTATGTAGATTTA+TGG | + | chr2_4:61298340-61298359 | Msa0339990:intron | 20.0% |
| !! | GATTAAAAAGGACTAAAATA+AGG | - | chr2_4:61298479-61298498 | None:intergenic | 20.0% |
| !!! | TTGAAGAATACTGATTAAAA+AGG | - | chr2_4:61298491-61298510 | None:intergenic | 20.0% |
| !! | TAAACAATTGAAACTAAACT+TGG | - | chr2_4:61298551-61298570 | None:intergenic | 20.0% |
| !!! | ATTGGTGTTGATAAAATTAA+CGG | - | chr2_4:61299180-61299199 | None:intergenic | 20.0% |
| !!! | TTAATTTTATCAACACCAAT+TGG | + | chr2_4:61299180-61299199 | Msa0339990:intron | 20.0% |
| !!! | TTTTTTTTTGCAGTATATAG+CGG | + | chr2_4:61299226-61299245 | Msa0339990:intron | 20.0% |
| !!! | AAGAACATGAGAAAGTATTA+TGG | + | chr2_4:61295197-61295216 | Msa0339990:CDS | 25.0% |
| !!! | AGAACATGAGAAAGTATTAT+GGG | + | chr2_4:61295198-61295217 | Msa0339990:CDS | 25.0% |
| ! | TAACTTTGTCAAAGAAAATG+AGG | + | chr2_4:61295274-61295293 | Msa0339990:CDS | 25.0% |
| !! | GTTAAAGAAATCCATTGATT+TGG | + | chr2_4:61295483-61295502 | Msa0339990:CDS | 25.0% |
| ! | CAATAAAGTCCTTCAAAAAA+TGG | + | chr2_4:61295506-61295525 | Msa0339990:CDS | 25.0% |
| ! | AAGTTGAAAATAATAAGGCA+CGG | - | chr2_4:61295671-61295690 | None:intergenic | 25.0% |
| ! | CCATTATTGTCCAAATAATT+TGG | - | chr2_4:61296012-61296031 | None:intergenic | 25.0% |
| ! | CCAAATTATTTGGACAATAA+TGG | + | chr2_4:61296009-61296028 | Msa0339990:CDS | 25.0% |
| ! | AGAAGGTAAAAGAAATAGTA+AGG | - | chr2_4:61296117-61296136 | None:intergenic | 25.0% |
| ! | AATTGAAATGAAAAGCAAGA+AGG | - | chr2_4:61296134-61296153 | None:intergenic | 25.0% |
| ! | CAAAAGTAGCAAATTAATGA+AGG | + | chr2_4:61296410-61296429 | Msa0339990:intron | 25.0% |
| ! | CATAAAAATACCGAATTGTT+AGG | + | chr2_4:61296500-61296519 | Msa0339990:intron | 25.0% |
| ! | TAGGTAAACCAAAATGATAA+TGG | - | chr2_4:61296587-61296606 | None:intergenic | 25.0% |
| ! | ATTTCTGTTGAACAATAAGA+TGG | + | chr2_4:61296800-61296819 | Msa0339990:intron | 25.0% |
| !!! | TCCTTTGTTTTATTCTCTTT+AGG | + | chr2_4:61296998-61297017 | Msa0339990:intron | 25.0% |
| ! | ACCTAAAGAGAATAAAACAA+AGG | - | chr2_4:61297002-61297021 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTCTCTTTAGG+TGG | + | chr2_4:61297001-61297020 | Msa0339990:intron | 25.0% |
| ! | GAAGGGATTAAAAAAATGTT+TGG | + | chr2_4:61297035-61297054 | Msa0339990:CDS | 25.0% |
| ! | ATTTCTCATTTAGTCATTCT+TGG | - | chr2_4:61297594-61297613 | None:intergenic | 25.0% |
| ! | TGTAATAGAAAGAAGAAAGA+AGG | - | chr2_4:61297880-61297899 | None:intergenic | 25.0% |
| ! | TGATTGCTTATATATGAAAC+GGG | - | chr2_4:61297920-61297939 | None:intergenic | 25.0% |
| !! | GGAAAATTGTACATTTTACA+AGG | - | chr2_4:61298186-61298205 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTACATAGATCTC+GGG | - | chr2_4:61298208-61298227 | None:intergenic | 25.0% |
| ! | ACTTATCTTACAGTGATAAT+GGG | - | chr2_4:61298437-61298456 | None:intergenic | 25.0% |
| ! | TACTTATCTTACAGTGATAA+TGG | - | chr2_4:61298438-61298457 | None:intergenic | 25.0% |
| ! | AACTAAACTTGGTTAACATT+TGG | - | chr2_4:61298540-61298559 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGTTTATTTGC+AGG | + | chr2_4:61298556-61298575 | Msa0339990:intron | 25.0% |
| ! | ATTTAATGATGCAATTCTAC+AGG | + | chr2_4:61298706-61298725 | Msa0339990:CDS | 25.0% |
| ! | CATAGTAGTGAAAATATGTT+AGG | - | chr2_4:61298778-61298797 | None:intergenic | 25.0% |
| ! | TCTAACCGTATATAAATAGT+CGG | - | chr2_4:61298933-61298952 | None:intergenic | 25.0% |
| !! | TTTTCACAATAAGATAGTGA+GGG | - | chr2_4:61299100-61299119 | None:intergenic | 25.0% |
| ! | ATTATCTTTCATATGCCAAT+TGG | - | chr2_4:61299198-61299217 | None:intergenic | 25.0% |
| ! | GCTTACAATTTAAACTACAT+TGG | + | chr2_4:61299419-61299438 | Msa0339990:CDS | 25.0% |
| ! | TTCAAAACGTTCATTATATG+AGG | + | chr2_4:61299472-61299491 | Msa0339990:CDS | 25.0% |
| ! | TGGATGATAGTTGTAAAAAT+AGG | - | chr2_4:61299524-61299543 | None:intergenic | 25.0% |
| ! | TTTACAACTATCATCCAATA+AGG | + | chr2_4:61299527-61299546 | Msa0339990:three_prime_UTR | 25.0% |
| !! | GAAAAACAAAAGAAGCATCA+TGG | + | chr2_4:61295225-61295244 | Msa0339990:CDS | 30.0% |
| AAATGAGGAAGAAATCTTGA+AGG | + | chr2_4:61295289-61295308 | Msa0339990:CDS | 30.0% | |
| AAAGTCCTTCAAAAAATGGA+TGG | + | chr2_4:61295510-61295529 | Msa0339990:CDS | 30.0% | |
| !! | ACTTGAAAGTAGTGCTATTT+GGG | - | chr2_4:61295709-61295728 | None:intergenic | 30.0% |
| AATTCCATGATGAGATTATG+AGG | - | chr2_4:61295764-61295783 | None:intergenic | 30.0% | |
| ! | TCATCATGGAATTTTCCATT+TGG | + | chr2_4:61295771-61295790 | Msa0339990:CDS | 30.0% |
| ! | TCCATTTGGTGAGTAAAATA+TGG | + | chr2_4:61295785-61295804 | Msa0339990:intron | 30.0% |
| !! | TTTCTCTTGGTTTTTGTAAC+AGG | + | chr2_4:61295880-61295899 | Msa0339990:intron | 30.0% |
| CAAATAATTTGGTAGAACAG+TGG | - | chr2_4:61296001-61296020 | None:intergenic | 30.0% | |
| CACTGTTCTACCAAATTATT+TGG | + | chr2_4:61295999-61296018 | Msa0339990:CDS | 30.0% | |
| AATGGCATTAAGATCATTGA+AGG | + | chr2_4:61296027-61296046 | Msa0339990:CDS | 30.0% | |
| AGCAACTCCTACATAAAAAA+TGG | + | chr2_4:61296067-61296086 | Msa0339990:CDS | 30.0% | |
| GCAACTCCTACATAAAAAAT+GGG | + | chr2_4:61296068-61296087 | Msa0339990:CDS | 30.0% | |
| !!! | TCTTGTCCCATTTTTTATGT+AGG | - | chr2_4:61296077-61296096 | None:intergenic | 30.0% |
| TTGATTCACTTTCAACTTCT+TGG | + | chr2_4:61296306-61296325 | Msa0339990:CDS | 30.0% | |
| TGATTCACTTTCAACTTCTT+GGG | + | chr2_4:61296307-61296326 | Msa0339990:CDS | 30.0% | |
| GTTCATTTAATCTTCTCACA+TGG | + | chr2_4:61296344-61296363 | Msa0339990:intron | 30.0% | |
| ATGTACCTTCTATTGTAGAA+AGG | + | chr2_4:61296368-61296387 | Msa0339990:intron | 30.0% | |
| !! | ACCAAAATGATAATGGTCAT+CGG | - | chr2_4:61296580-61296599 | None:intergenic | 30.0% |
| !!! | CAATGCTGTTGGATTTTTTT+GGG | - | chr2_4:61297067-61297086 | None:intergenic | 30.0% |
| TGAACCTAATGTCAAAGAAT+CGG | + | chr2_4:61297136-61297155 | Msa0339990:CDS | 30.0% | |
| !!! | TCGACGAAGTTTTAAATTCA+CGG | + | chr2_4:61297233-61297252 | Msa0339990:intron | 30.0% |
| TTAACCTGAAAAGTCTTTCA+TGG | + | chr2_4:61297378-61297397 | Msa0339990:intron | 30.0% | |
| !! | TCCTCTTAAGAATTTTAGGA+TGG | + | chr2_4:61297702-61297721 | Msa0339990:intron | 30.0% |
| ACCATCCTAAAATTCTTAAG+AGG | - | chr2_4:61297706-61297725 | None:intergenic | 30.0% | |
| CAAGGTGAAAACATGAAATA+TGG | - | chr2_4:61297736-61297755 | None:intergenic | 30.0% | |
| AGGAATGATAGCATTAACTA+TGG | + | chr2_4:61298104-61298123 | Msa0339990:intron | 30.0% | |
| !!! | TTTTTTGTACATAGATCTCG+GGG | - | chr2_4:61298207-61298226 | None:intergenic | 30.0% |
| !! | AGGAAAAATTGGTCTCTTTT+AGG | - | chr2_4:61298282-61298301 | None:intergenic | 30.0% |
| TATGGAACCAACAATATTAC+TGG | + | chr2_4:61298358-61298377 | Msa0339990:CDS | 30.0% | |
| ATCATGACAGAAGAAATCTT+TGG | + | chr2_4:61298401-61298420 | Msa0339990:CDS | 30.0% | |
| !! | AGTATTCTTCAAAAGTGTCA+AGG | + | chr2_4:61298499-61298518 | Msa0339990:intron | 30.0% |
| TTCAATTGTTTATTTGCAGG+TGG | + | chr2_4:61298559-61298578 | Msa0339990:intron | 30.0% | |
| ATCATTAAATACAATGCTCC+CGG | - | chr2_4:61298696-61298715 | None:intergenic | 30.0% | |
| TGTAGCCGACTATTTATATA+CGG | + | chr2_4:61298925-61298944 | Msa0339990:intron | 30.0% | |
| ! | CTTTTCACAATAAGATAGTG+AGG | - | chr2_4:61299101-61299120 | None:intergenic | 30.0% |
| !!! | GAAGTTACTACACTGATTTT+TGG | + | chr2_4:61299348-61299367 | Msa0339990:CDS | 30.0% |
| !!! | GGAATACTTCTTGTTTTACT+CGG | + | chr2_4:61299440-61299459 | Msa0339990:CDS | 30.0% |
| CAATAATCAGCTATCCTTAT+TGG | - | chr2_4:61299544-61299563 | None:intergenic | 30.0% | |
| ! | AAAAGCACACATTAGAATCT+TGG | - | chr2_4:61299604-61299623 | None:intergenic | 30.0% |
| !! | ATGAGAAAGTATTATGGGAG+TGG | + | chr2_4:61295203-61295222 | Msa0339990:CDS | 35.0% |
| TGGAGAGAATCACAACTAAA+AGG | + | chr2_4:61295245-61295264 | Msa0339990:CDS | 35.0% | |
| GGACTTTATTGCCAAATCAA+TGG | - | chr2_4:61295497-61295516 | None:intergenic | 35.0% | |
| !! | CTTGAAAGTAGTGCTATTTG+GGG | - | chr2_4:61295708-61295727 | None:intergenic | 35.0% |
| ! | CACTTGAAAGTAGTGCTATT+TGG | - | chr2_4:61295710-61295729 | None:intergenic | 35.0% |
| TAGTCCTCATAATCTCATCA+TGG | + | chr2_4:61295757-61295776 | Msa0339990:CDS | 35.0% | |
| ! | GCCATATTTTACTCACCAAA+TGG | - | chr2_4:61295789-61295808 | None:intergenic | 35.0% |
| GTTCAAAGTTGTGTTTCTCT+TGG | + | chr2_4:61295867-61295886 | Msa0339990:intron | 35.0% | |
| TAGAAGAGAAGAAGAAGTAG+GGG | - | chr2_4:61295977-61295996 | None:intergenic | 35.0% | |
| CTAGAAGAGAAGAAGAAGTA+GGG | - | chr2_4:61295978-61295997 | None:intergenic | 35.0% | |
| ! | TGGGACAAGATATTTTTCAC+TGG | + | chr2_4:61296087-61296106 | Msa0339990:CDS | 35.0% |
| TCGTGCACTTCCTAATATAT+TGG | - | chr2_4:61296204-61296223 | None:intergenic | 35.0% | |
| CATTGCCTTTCTACAATAGA+AGG | - | chr2_4:61296376-61296395 | None:intergenic | 35.0% | |
| TCTATTGTAGAAAGGCAATG+TGG | + | chr2_4:61296376-61296395 | Msa0339990:intron | 35.0% | |
| ! | ATGAGTTGGGATTCAATCAA+CGG | - | chr2_4:61296539-61296558 | None:intergenic | 35.0% |
| ! | TCCGATGACCATTATCATTT+TGG | + | chr2_4:61296576-61296595 | Msa0339990:intron | 35.0% |
| GTCCACAATGACTATATGTT+AGG | + | chr2_4:61296635-61296654 | Msa0339990:intron | 35.0% | |
| CTCCTAACATATAGTCATTG+TGG | - | chr2_4:61296640-61296659 | None:intergenic | 35.0% | |
| TAGGACATTCGCAAAATGAT+CGG | + | chr2_4:61296701-61296720 | Msa0339990:intron | 35.0% | |
| !! | GAATTTTGGTGGCAAAGTAT+GGG | + | chr2_4:61296832-61296851 | Msa0339990:CDS | 35.0% |
| !! | AATTTTGGTGGCAAAGTATG+GGG | + | chr2_4:61296833-61296852 | Msa0339990:CDS | 35.0% |
| ! | AACTGAAGCTCTTTTCTACA+AGG | - | chr2_4:61296896-61296915 | None:intergenic | 35.0% |
| !!! | TTTCCTGCTTTTTACCAATG+TGG | - | chr2_4:61296919-61296938 | None:intergenic | 35.0% |
| TCTTTAGGTGGAGTTAATGA+AGG | + | chr2_4:61297013-61297032 | Msa0339990:intron | 35.0% | |
| !!! | GCAATGCTGTTGGATTTTTT+TGG | - | chr2_4:61297068-61297087 | None:intergenic | 35.0% |
| AAAAATCCAACAGCATTGCA+AGG | + | chr2_4:61297069-61297088 | Msa0339990:CDS | 35.0% | |
| TTCTTGGATAAGTCAATTCG+AGG | - | chr2_4:61297578-61297597 | None:intergenic | 35.0% | |
| TGCTTATATATGAAACGGGA+GGG | - | chr2_4:61297916-61297935 | None:intergenic | 35.0% | |
| TTGCTTATATATGAAACGGG+AGG | - | chr2_4:61297917-61297936 | None:intergenic | 35.0% | |
| TGTTTATGGAACAAGTTCTC+AGG | - | chr2_4:61298036-61298055 | None:intergenic | 35.0% | |
| !!! | TGGTCTCTTTTAGGTTCATT+TGG | - | chr2_4:61298273-61298292 | None:intergenic | 35.0% |
| !! | TCATGATTGCTGATTCAAGT+GGG | - | chr2_4:61298388-61298407 | None:intergenic | 35.0% |
| GCATAAATTGCTAGAGGTTT+AGG | - | chr2_4:61298623-61298642 | None:intergenic | 35.0% | |
| ! | GTGAAAGCATAAATTGCTAG+AGG | - | chr2_4:61298629-61298648 | None:intergenic | 35.0% |
| ! | TTGGTATCTGAAACATCATC+CGG | + | chr2_4:61298674-61298693 | Msa0339990:CDS | 35.0% |
| TCACTACTATGAAACCAGTA+AGG | + | chr2_4:61298787-61298806 | Msa0339990:intron | 35.0% | |
| CTTGCAAAACAAAACCTTAC+TGG | - | chr2_4:61298804-61298823 | None:intergenic | 35.0% | |
| AGAGAAGTTAAGTGGAAGTT+TGG | - | chr2_4:61298830-61298849 | None:intergenic | 35.0% | |
| !!! | ACTACACTGATTTTTGGTTC+AGG | + | chr2_4:61299354-61299373 | Msa0339990:CDS | 35.0% |
| !! | AACTTGTTAAGATTCCATGG+AGG | - | chr2_4:61299383-61299402 | None:intergenic | 35.0% |
| !! | TGGAACTTGTTAAGATTCCA+TGG | - | chr2_4:61299386-61299405 | None:intergenic | 35.0% |
| TGTAAGCTTCTTCAAGTAGT+TGG | - | chr2_4:61299406-61299425 | None:intergenic | 35.0% | |
| CTTCCCTAAATCCTTCTTGA+GGG | - | chr2_4:61295315-61295334 | None:intergenic | 40.0% | |
| !! | TTTAGGGAAGCATCATGTTG+AGG | + | chr2_4:61295325-61295344 | Msa0339990:CDS | 40.0% |
| !! | TGTTGAGGCTTTTAGAGATG+AGG | + | chr2_4:61295340-61295359 | Msa0339990:CDS | 40.0% |
| TCCTTCAAAAAATGGATGGC+TGG | + | chr2_4:61295514-61295533 | Msa0339990:CDS | 40.0% | |
| !!! | ACCAGCCATCCATTTTTTGA+AGG | - | chr2_4:61295518-61295537 | None:intergenic | 40.0% |
| AAAATGGATGGCTGGTAAAG+AGG | + | chr2_4:61295522-61295541 | Msa0339990:CDS | 40.0% | |
| ATTATGAGGACTAGACCAAG+AGG | - | chr2_4:61295750-61295769 | None:intergenic | 40.0% | |
| !!! | TTTTGTAACAGGAGTGTCCT+TGG | + | chr2_4:61295891-61295910 | Msa0339990:intron | 40.0% |
| AGTCCTAAAACCTTCAGAGT+TGG | + | chr2_4:61295951-61295970 | Msa0339990:CDS | 40.0% | |
| GCTAGAAGAGAAGAAGAAGT+AGG | - | chr2_4:61295979-61295998 | None:intergenic | 40.0% | |
| GGCATTAAGATCATTGAAGG+TGG | + | chr2_4:61296030-61296049 | Msa0339990:CDS | 40.0% | |
| ATTGAAGGTGGACCAGAAAT+TGG | + | chr2_4:61296042-61296061 | Msa0339990:CDS | 40.0% | |
| ! | TATATTAGGAAGTGCACGAG+TGG | + | chr2_4:61296205-61296224 | Msa0339990:intron | 40.0% |
| ! | ATATTAGGAAGTGCACGAGT+GGG | + | chr2_4:61296206-61296225 | Msa0339990:intron | 40.0% |
| !! | ACTCCTATAACTCTGGAGTT+AGG | + | chr2_4:61296263-61296282 | Msa0339990:CDS | 40.0% |
| !! | CTCCTATAACTCTGGAGTTA+GGG | + | chr2_4:61296264-61296283 | Msa0339990:CDS | 40.0% |
| !! | TCCTATAACTCTGGAGTTAG+GGG | + | chr2_4:61296265-61296284 | Msa0339990:CDS | 40.0% |
| TGTAGAAAGGCAATGTGGAA+TGG | + | chr2_4:61296381-61296400 | Msa0339990:intron | 40.0% | |
| TGGGATTCAATCAACGGTTA+CGG | - | chr2_4:61296533-61296552 | None:intergenic | 40.0% | |
| CACAGACTAGTGAATGAGTT+GGG | - | chr2_4:61296552-61296571 | None:intergenic | 40.0% | |
| TCACAGACTAGTGAATGAGT+TGG | - | chr2_4:61296553-61296572 | None:intergenic | 40.0% | |
| ! | GATGGCTGTGAAACGAATTT+TGG | + | chr2_4:61296818-61296837 | Msa0339990:intron | 40.0% |
| !! | CGAATTTTGGTGGCAAAGTA+TGG | + | chr2_4:61296831-61296850 | Msa0339990:CDS | 40.0% |
| AAAGAGCTTCAGTTCCACAT+TGG | + | chr2_4:61296902-61296921 | Msa0339990:CDS | 40.0% | |
| GTTCCACATTGGTAAAAAGC+AGG | + | chr2_4:61296913-61296932 | Msa0339990:intron | 40.0% | |
| TAGGTGGAGTTAATGAAGGA+AGG | + | chr2_4:61297017-61297036 | Msa0339990:intron | 40.0% | |
| AGGTGGAGTTAATGAAGGAA+GGG | + | chr2_4:61297018-61297037 | Msa0339990:intron | 40.0% | |
| AACAATCCTTGCAATGCTGT+TGG | - | chr2_4:61297078-61297097 | None:intergenic | 40.0% | |
| GAGGAGACTCTTGATTCTAT+TGG | - | chr2_4:61297114-61297133 | None:intergenic | 40.0% | |
| CTTTGACATTAGGTTCACTG+AGG | - | chr2_4:61297133-61297152 | None:intergenic | 40.0% | |
| ACCTAATGTCAAAGAATCGG+TGG | + | chr2_4:61297139-61297158 | Msa0339990:CDS | 40.0% | |
| !! | ACCACCGATTCTTTGACATT+AGG | - | chr2_4:61297143-61297162 | None:intergenic | 40.0% |
| ! | GTCAAAGAATCGGTGGTTTT+TGG | + | chr2_4:61297146-61297165 | Msa0339990:CDS | 40.0% |
| !! | AAAGAATCGGTGGTTTTTGG+TGG | + | chr2_4:61297149-61297168 | Msa0339990:CDS | 40.0% |
| ! | GTGTCCATGAAAGACTTTTC+AGG | - | chr2_4:61297385-61297404 | None:intergenic | 40.0% |
| AAGTCAATTCGAGGCACAAT+TGG | - | chr2_4:61297569-61297588 | None:intergenic | 40.0% | |
| GAAGGCGAGCTATAGAAATA+AGG | - | chr2_4:61297862-61297881 | None:intergenic | 40.0% | |
| TATGGAACAAGTTCTCAGGA+GGG | - | chr2_4:61298032-61298051 | None:intergenic | 40.0% | |
| TTATGGAACAAGTTCTCAGG+AGG | - | chr2_4:61298033-61298052 | None:intergenic | 40.0% | |
| !! | ATGATTGCTGATTCAAGTGG+GGG | - | chr2_4:61298386-61298405 | None:intergenic | 40.0% |
| !! | CATGATTGCTGATTCAAGTG+GGG | - | chr2_4:61298387-61298406 | None:intergenic | 40.0% |
| !! | GTCATGATTGCTGATTCAAG+TGG | - | chr2_4:61298389-61298408 | None:intergenic | 40.0% |
| !! | TACAGTGATAATGGGAAGCA+CGG | - | chr2_4:61298429-61298448 | None:intergenic | 40.0% |
| CAAAACACTGCAGAGAAGAT+TGG | + | chr2_4:61298655-61298674 | Msa0339990:CDS | 40.0% | |
| ! | TGGTATCTGAAACATCATCC+GGG | + | chr2_4:61298675-61298694 | Msa0339990:CDS | 40.0% |
| AGCTTGAGAGAGAAGTTAAG+TGG | - | chr2_4:61298838-61298857 | None:intergenic | 40.0% | |
| AGTCGGCTACATCATAAAAC+AGG | - | chr2_4:61298916-61298935 | None:intergenic | 40.0% | |
| GCATCGTAAGTCGATTGTAT+AGG | + | chr2_4:61298998-61299017 | Msa0339990:intron | 40.0% | |
| ATTCACCAACTCCTCCAAAT+GGG | - | chr2_4:61299259-61299278 | None:intergenic | 40.0% | |
| TGTGGATTTGGCAAGTATCA+TGG | + | chr2_4:61299278-61299297 | Msa0339990:CDS | 40.0% | |
| GTGGATTTGGCAAGTATCAT+GGG | + | chr2_4:61299279-61299298 | Msa0339990:CDS | 40.0% | |
| ATTCAGTCACCATAAAGCTG+TGG | + | chr2_4:61299319-61299338 | Msa0339990:CDS | 40.0% | |
| AATCTTGAAGGCCCTCAAGA+AGG | + | chr2_4:61295301-61295320 | Msa0339990:CDS | 45.0% | |
| AAGGCCCTCAAGAAGGATTT+AGG | + | chr2_4:61295308-61295327 | Msa0339990:CDS | 45.0% | |
| AGGCCCTCAAGAAGGATTTA+GGG | + | chr2_4:61295309-61295328 | Msa0339990:CDS | 45.0% | |
| GCTTCCCTAAATCCTTCTTG+AGG | - | chr2_4:61295316-61295335 | None:intergenic | 45.0% | |
| GAAATTGTTGCTGAGCCTCT+TGG | + | chr2_4:61295732-61295751 | Msa0339990:CDS | 45.0% | |
| GTGTCCTTGGAGCCATTAAT+TGG | + | chr2_4:61295904-61295923 | Msa0339990:CDS | 45.0% | |
| GCAGCTATGGCTCCAATTAA+TGG | - | chr2_4:61295919-61295938 | None:intergenic | 45.0% | |
| TTAATTGGAGCCATAGCTGC+TGG | + | chr2_4:61295919-61295938 | Msa0339990:CDS | 45.0% | |
| TGCAACATTTCCAGCAGCTA+TGG | - | chr2_4:61295932-61295951 | None:intergenic | 45.0% | |
| AGGAGTTGCTCTCCAATTTC+TGG | - | chr2_4:61296057-61296076 | None:intergenic | 45.0% | |
| ! | TATTAGGAAGTGCACGAGTG+GGG | + | chr2_4:61296207-61296226 | Msa0339990:intron | 45.0% |
| GATTGTTATGTCTGCAGCAG+TGG | + | chr2_4:61296232-61296251 | Msa0339990:CDS | 45.0% | |
| GCATCTCACTCCTATAACTC+TGG | + | chr2_4:61296256-61296275 | Msa0339990:CDS | 45.0% | |
| !! | CCTATAACTCTGGAGTTAGG+GGG | + | chr2_4:61296266-61296285 | Msa0339990:CDS | 45.0% |
| GAAAGTGAATCAACCAGTGC+TGG | - | chr2_4:61296299-61296318 | None:intergenic | 45.0% | |
| TTCAACTTCTTGGGACAGAG+AGG | + | chr2_4:61296316-61296335 | Msa0339990:CDS | 45.0% | |
| CGGTGTGCAACCTAACAATT+CGG | - | chr2_4:61296513-61296532 | None:intergenic | 45.0% | |
| ! | GGCTGTGAAACGAATTTTGG+TGG | + | chr2_4:61296821-61296840 | Msa0339990:CDS | 45.0% |
| CAATTCGAGGCACAATTGGT+TGG | - | chr2_4:61297565-61297584 | None:intergenic | 45.0% | |
| ! | AGTTCTCAGGAGGGATGTTT+TGG | - | chr2_4:61298023-61298042 | None:intergenic | 45.0% |
| GGGGGATCCAGTAATATTGT+TGG | - | chr2_4:61298368-61298387 | None:intergenic | 45.0% | |
| !! | ACAGTGATAATGGGAAGCAC+GGG | - | chr2_4:61298428-61298447 | None:intergenic | 45.0% |
| CAGGTGGAGAAGATTGAAGA+CGG | + | chr2_4:61298575-61298594 | Msa0339990:intron | 45.0% | |
| !! | ATAGCGGATACCATCCCATT+TGG | + | chr2_4:61299242-61299261 | Msa0339990:CDS | 45.0% |
| CATTCACCAACTCCTCCAAA+TGG | - | chr2_4:61299260-61299279 | None:intergenic | 45.0% | |
| !! | TTTGGAGGAGTTGGTGAATG+TGG | + | chr2_4:61299260-61299279 | Msa0339990:CDS | 45.0% |
| !! | GGAGTTGGTGAATGTGGATT+TGG | + | chr2_4:61299266-61299285 | Msa0339990:CDS | 45.0% |
| TTCTCCTAGCCACAGCTTTA+TGG | - | chr2_4:61299331-61299350 | None:intergenic | 45.0% | |
| ! | TTTGGTTCAGGTTTCCTCCA+TGG | + | chr2_4:61299366-61299385 | Msa0339990:CDS | 45.0% |
| !!! | TATATTAATAAACTTTTTTT+AGG | - | chr2_4:61296606-61296625 | None:intergenic | 5.0% |
| !! | TTAAAAAAATAAATAAAATC+GGG | - | chr2_4:61296762-61296781 | None:intergenic | 5.0% |
| !! | TAAAATTTAAATTTATTCAA+AGG | + | chr2_4:61298075-61298094 | Msa0339990:intron | 5.0% |
| TGGTGACATGGAGTTCTCAG+TGG | + | chr2_4:61295154-61295173 | Msa0339990:exon | 50.0% | |
| GGAGTTCTCAGTGGAAGCTT+TGG | + | chr2_4:61295163-61295182 | Msa0339990:CDS | 50.0% | |
| GGCTCCAATTAATGGCTCCA+AGG | - | chr2_4:61295911-61295930 | None:intergenic | 50.0% | |
| !! | GGGCCAACTCTGAAGGTTTT+AGG | - | chr2_4:61295957-61295976 | None:intergenic | 50.0% |
| CCCCCTAACTCCAGAGTTAT+AGG | - | chr2_4:61296269-61296288 | None:intergenic | 50.0% | |
| ACCATCCCATTTGGAGGAGT+TGG | + | chr2_4:61299251-61299270 | Msa0339990:CDS | 50.0% | |
| ACCAACTCCTCCAAATGGGA+TGG | - | chr2_4:61299255-61299274 | None:intergenic | 50.0% | |
| GTCACCATAAAGCTGTGGCT+AGG | + | chr2_4:61299324-61299343 | Msa0339990:CDS | 50.0% | |
| GAAGTAGGGGCCAACTCTGA+AGG | - | chr2_4:61295964-61295983 | None:intergenic | 55.0% | |
| AGGGGGAAAATGTCCAGCAC+TGG | + | chr2_4:61296283-61296302 | Msa0339990:CDS | 55.0% | |
| GCAAAGTATGGGGCTTGTGC+AGG | + | chr2_4:61296843-61296862 | Msa0339990:CDS | 55.0% | |
| GCGGATACCATCCCATTTGG+AGG | + | chr2_4:61299245-61299264 | Msa0339990:CDS | 55.0% | |
| ! | TAGGAAGTGCACGAGTGGGG+AGG | + | chr2_4:61296210-61296229 | Msa0339990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 61295148 | 61299645 | 61295148 | ID=Msa0339990;Name=Msa0339990 |
| chr2_4 | mRNA | 61295148 | 61299645 | 61295148 | ID=Msa0339990-mRNA-1;Parent=Msa0339990;Name=Msa0339990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=13|1|1|1|1|1|10|140|494 |
| chr2_4 | exon | 61295148 | 61295361 | 61295148 | ID=Msa0339990-mRNA-1:exon:19225;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61295475 | 61295543 | 61295475 | ID=Msa0339990-mRNA-1:exon:19226;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61295696 | 61295792 | 61295696 | ID=Msa0339990-mRNA-1:exon:19227;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61295902 | 61296108 | 61295902 | ID=Msa0339990-mRNA-1:exon:19228;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61296213 | 61296337 | 61296213 | ID=Msa0339990-mRNA-1:exon:19229;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61296819 | 61296923 | 61296819 | ID=Msa0339990-mRNA-1:exon:19230;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61297020 | 61297192 | 61297020 | ID=Msa0339990-mRNA-1:exon:19231;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61298355 | 61298445 | 61298355 | ID=Msa0339990-mRNA-1:exon:19232;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61298578 | 61298727 | 61298578 | ID=Msa0339990-mRNA-1:exon:19233;Parent=Msa0339990-mRNA-1 |
| chr2_4 | exon | 61299239 | 61299645 | 61299239 | ID=Msa0339990-mRNA-1:exon:19234;Parent=Msa0339990-mRNA-1 |
| chr2_4 | five_prime_UTR | 61295148 | 61295160 | 61295148 | ID=Msa0339990-mRNA-1:five_prime_utr;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61295161 | 61295361 | 61295161 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61295475 | 61295543 | 61295475 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61295696 | 61295792 | 61295696 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61295902 | 61296108 | 61295902 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61296213 | 61296337 | 61296213 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61296819 | 61296923 | 61296819 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61297020 | 61297192 | 61297020 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61298355 | 61298445 | 61298355 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61298578 | 61298727 | 61298578 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | CDS | 61299239 | 61299505 | 61299239 | ID=Msa0339990-mRNA-1:cds;Parent=Msa0339990-mRNA-1 |
| chr2_4 | three_prime_UTR | 61299506 | 61299645 | 61299506 | ID=Msa0339990-mRNA-1:three_prime_utr;Parent=Msa0339990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
