Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225870 | XP_003597825.1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225870 | sp|Q5KS50|NPH3_ORYSJ | 35.402 | 435 | 194 | 8 | 10 | 358 | 256 | 689 | 8.83e-73 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225870 | G7IMG1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225870 | Msa0260460 | 0.931048 | 6.711814e-94 | -8.615850e-47 |
| Msa0225870 | Msa0341180 | 0.925893 | 9.888402e-91 | -8.615850e-47 |
| Msa0225870 | Msa1397450 | 0.965232 | 2.444138e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225870 | MtrunA17_Chr2g0332281 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Msa0225870 | MtrunA17_Chr4g0003891 | 71.891 | 402 | 96 | 6 | 23 | 409 | 45 | 444 | 0.0 | 570 |
| Msa0225870 | MtrunA17_Chr2g0279481 | 34.519 | 478 | 238 | 8 | 10 | 423 | 219 | 685 | 9.70e-82 | 265 |
| Msa0225870 | MtrunA17_Chr4g0050021 | 37.701 | 435 | 211 | 10 | 7 | 384 | 215 | 646 | 3.60e-81 | 263 |
| Msa0225870 | MtrunA17_Chr4g0010091 | 38.843 | 363 | 195 | 6 | 25 | 364 | 212 | 570 | 5.56e-68 | 227 |
| Msa0225870 | MtrunA17_Chr5g0412591 | 39.677 | 310 | 142 | 5 | 26 | 293 | 183 | 489 | 1.09e-64 | 218 |
| Msa0225870 | MtrunA17_Chr2g0285511 | 33.763 | 388 | 229 | 6 | 25 | 392 | 215 | 594 | 2.35e-64 | 217 |
| Msa0225870 | MtrunA17_Chr8g0382231 | 37.919 | 298 | 156 | 5 | 25 | 294 | 216 | 512 | 2.03e-63 | 215 |
| Msa0225870 | MtrunA17_Chr7g0245201 | 37.995 | 379 | 209 | 9 | 25 | 384 | 237 | 608 | 2.30e-63 | 215 |
| Msa0225870 | MtrunA17_Chr2g0303541 | 35.533 | 394 | 204 | 9 | 25 | 378 | 216 | 599 | 1.87e-62 | 213 |
| Msa0225870 | MtrunA17_Chr7g0268781 | 34.499 | 429 | 220 | 12 | 30 | 420 | 219 | 624 | 1.89e-61 | 209 |
| Msa0225870 | MtrunA17_Chr1g0195911 | 33.738 | 412 | 219 | 12 | 30 | 399 | 216 | 615 | 2.04e-59 | 204 |
| Msa0225870 | MtrunA17_Chr1g0207461 | 35.294 | 425 | 208 | 14 | 26 | 407 | 215 | 615 | 3.55e-59 | 203 |
| Msa0225870 | MtrunA17_Chr1g0181181 | 33.151 | 365 | 195 | 9 | 25 | 356 | 191 | 539 | 6.50e-57 | 196 |
| Msa0225870 | MtrunA17_Chr1g0199631 | 32.105 | 380 | 218 | 7 | 25 | 380 | 177 | 540 | 1.74e-56 | 195 |
| Msa0225870 | MtrunA17_Chr1g0150191 | 40.559 | 286 | 138 | 7 | 26 | 292 | 215 | 487 | 1.49e-55 | 193 |
| Msa0225870 | MtrunA17_Chr5g0401341 | 40.989 | 283 | 139 | 5 | 26 | 293 | 214 | 483 | 3.43e-55 | 193 |
| Msa0225870 | MtrunA17_Chr8g0374011 | 39.527 | 296 | 153 | 4 | 25 | 298 | 228 | 519 | 5.42e-55 | 193 |
| Msa0225870 | MtrunA17_Chr5g0401451 | 36.036 | 333 | 186 | 6 | 26 | 340 | 221 | 544 | 3.36e-54 | 190 |
| Msa0225870 | MtrunA17_Chr4g0053841 | 36.193 | 373 | 197 | 9 | 26 | 368 | 197 | 558 | 3.20e-53 | 187 |
| Msa0225870 | MtrunA17_Chr4g0076521 | 36.364 | 297 | 176 | 4 | 6 | 293 | 183 | 475 | 8.88e-51 | 180 |
| Msa0225870 | MtrunA17_Chr3g0108331 | 31.566 | 396 | 231 | 9 | 26 | 404 | 185 | 557 | 2.67e-50 | 178 |
| Msa0225870 | MtrunA17_Chr2g0320691 | 34.965 | 286 | 169 | 3 | 25 | 294 | 213 | 497 | 2.38e-48 | 174 |
| Msa0225870 | MtrunA17_Chr1g0191711 | 28.198 | 344 | 215 | 7 | 13 | 349 | 210 | 528 | 3.02e-46 | 167 |
| Msa0225870 | MtrunA17_Chr8g0367891 | 34.983 | 303 | 143 | 6 | 26 | 293 | 201 | 484 | 1.75e-45 | 166 |
| Msa0225870 | MtrunA17_Chr2g0290741 | 35.971 | 278 | 153 | 5 | 26 | 293 | 203 | 465 | 6.76e-40 | 150 |
| Msa0225870 | MtrunA17_Chr5g0432861 | 30.070 | 286 | 183 | 2 | 26 | 294 | 186 | 471 | 1.20e-39 | 149 |
| Msa0225870 | MtrunA17_Chr4g0023801 | 33.333 | 291 | 161 | 6 | 106 | 372 | 257 | 538 | 4.59e-35 | 136 |
| Msa0225870 | MtrunA17_Chr4g0037661 | 36.082 | 194 | 122 | 1 | 101 | 294 | 276 | 467 | 1.92e-31 | 125 |
| Msa0225870 | MtrunA17_Chr1g0163311 | 33.508 | 191 | 122 | 2 | 101 | 291 | 272 | 457 | 6.66e-29 | 118 |
| Msa0225870 | MtrunA17_Chr2g0280541 | 27.799 | 259 | 170 | 6 | 37 | 294 | 131 | 373 | 4.82e-19 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225870 | AT3G15570.1 | 59.121 | 455 | 151 | 8 | 1 | 423 | 1 | 452 | 0.0 | 514 |
| Msa0225870 | AT1G52770.1 | 58.409 | 440 | 154 | 9 | 12 | 423 | 16 | 454 | 2.99e-172 | 490 |
| Msa0225870 | AT5G03250.2 | 36.605 | 377 | 196 | 9 | 25 | 377 | 108 | 465 | 2.97e-66 | 219 |
| Msa0225870 | AT5G03250.1 | 36.605 | 377 | 196 | 9 | 25 | 377 | 220 | 577 | 3.01e-65 | 219 |
| Msa0225870 | AT5G64330.1 | 38.235 | 340 | 149 | 6 | 92 | 374 | 373 | 708 | 3.14e-65 | 222 |
| Msa0225870 | AT5G64330.3 | 45.957 | 235 | 96 | 2 | 92 | 295 | 314 | 548 | 4.84e-61 | 208 |
| Msa0225870 | AT5G13600.1 | 34.903 | 361 | 208 | 7 | 25 | 368 | 211 | 561 | 1.09e-60 | 207 |
| Msa0225870 | AT1G30440.1 | 34.121 | 381 | 208 | 7 | 25 | 366 | 217 | 593 | 1.56e-60 | 208 |
| Msa0225870 | AT5G64330.2 | 45.957 | 235 | 96 | 2 | 92 | 295 | 373 | 607 | 1.62e-60 | 208 |
| Msa0225870 | AT3G08660.3 | 33.989 | 356 | 188 | 6 | 26 | 357 | 140 | 472 | 1.27e-58 | 200 |
| Msa0225870 | AT3G08660.1 | 34.270 | 356 | 187 | 6 | 26 | 357 | 200 | 532 | 4.01e-58 | 200 |
| Msa0225870 | AT5G48800.1 | 35.696 | 381 | 196 | 8 | 25 | 376 | 222 | 582 | 1.76e-57 | 199 |
| Msa0225870 | AT5G66560.3 | 41.275 | 298 | 156 | 5 | 25 | 311 | 228 | 517 | 5.23e-57 | 198 |
| Msa0225870 | AT5G66560.4 | 41.275 | 298 | 156 | 5 | 25 | 311 | 218 | 507 | 5.38e-57 | 198 |
| Msa0225870 | AT1G03010.2 | 37.222 | 360 | 170 | 11 | 29 | 340 | 185 | 536 | 1.00e-56 | 197 |
| Msa0225870 | AT5G66560.1 | 41.275 | 298 | 156 | 5 | 25 | 311 | 257 | 546 | 1.10e-56 | 198 |
| Msa0225870 | AT1G03010.1 | 37.222 | 360 | 170 | 11 | 29 | 340 | 212 | 563 | 2.26e-56 | 196 |
| Msa0225870 | AT5G67385.4 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa0225870 | AT5G67385.5 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa0225870 | AT5G67385.2 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa0225870 | AT5G67385.3 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa0225870 | AT2G47860.5 | 34.359 | 390 | 195 | 9 | 30 | 374 | 96 | 469 | 2.53e-56 | 194 |
| Msa0225870 | AT2G47860.2 | 34.359 | 390 | 195 | 9 | 30 | 374 | 96 | 469 | 2.53e-56 | 194 |
| Msa0225870 | AT1G03010.3 | 37.326 | 359 | 169 | 11 | 30 | 340 | 212 | 562 | 2.62e-56 | 196 |
| Msa0225870 | AT5G67385.1 | 39.068 | 279 | 152 | 5 | 26 | 294 | 205 | 475 | 5.12e-56 | 195 |
| Msa0225870 | AT2G47860.1 | 34.359 | 390 | 195 | 9 | 30 | 374 | 214 | 587 | 2.05e-55 | 194 |
| Msa0225870 | AT2G30520.2 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 2.21e-55 | 192 |
| Msa0225870 | AT2G30520.3 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 2.21e-55 | 192 |
| Msa0225870 | AT2G47860.3 | 34.359 | 390 | 195 | 9 | 30 | 374 | 237 | 610 | 2.78e-55 | 194 |
| Msa0225870 | AT2G30520.1 | 35.905 | 337 | 205 | 3 | 26 | 351 | 191 | 527 | 3.99e-55 | 192 |
| Msa0225870 | AT3G26490.1 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa0225870 | AT3G26490.3 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa0225870 | AT3G26490.4 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa0225870 | AT4G31820.2 | 38.869 | 283 | 134 | 6 | 26 | 295 | 161 | 417 | 4.48e-53 | 185 |
| Msa0225870 | AT5G10250.2 | 32.533 | 375 | 219 | 7 | 23 | 370 | 212 | 579 | 4.60e-53 | 187 |
| Msa0225870 | AT4G31820.1 | 38.869 | 283 | 134 | 6 | 26 | 295 | 214 | 470 | 1.49e-52 | 185 |
| Msa0225870 | AT5G10250.1 | 32.329 | 365 | 218 | 7 | 23 | 370 | 212 | 564 | 1.05e-51 | 183 |
| Msa0225870 | AT2G14820.2 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.62e-50 | 181 |
| Msa0225870 | AT2G14820.1 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.62e-50 | 181 |
| Msa0225870 | AT1G67900.5 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT1G67900.1 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT1G67900.3 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT1G67900.6 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT1G67900.2 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT1G67900.4 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa0225870 | AT3G08570.1 | 31.944 | 360 | 211 | 7 | 25 | 359 | 213 | 563 | 1.38e-49 | 177 |
| Msa0225870 | AT3G44820.1 | 31.099 | 373 | 216 | 7 | 25 | 359 | 214 | 583 | 6.77e-48 | 174 |
| Msa0225870 | AT4G37590.1 | 37.868 | 272 | 145 | 5 | 26 | 295 | 218 | 467 | 1.62e-47 | 171 |
| Msa0225870 | AT5G47800.3 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa0225870 | AT5G47800.1 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa0225870 | AT5G47800.4 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa0225870 | AT3G50840.2 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 3.56e-46 | 167 |
| Msa0225870 | AT3G50840.3 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 3.56e-46 | 167 |
| Msa0225870 | AT5G47800.2 | 34.228 | 298 | 182 | 4 | 4 | 291 | 294 | 587 | 3.69e-46 | 169 |
| Msa0225870 | AT3G50840.1 | 33.333 | 357 | 226 | 5 | 25 | 381 | 197 | 541 | 6.97e-46 | 167 |
| Msa0225870 | AT2G23050.2 | 36.531 | 271 | 142 | 6 | 26 | 295 | 95 | 336 | 8.76e-45 | 159 |
| Msa0225870 | AT5G67440.2 | 36.823 | 277 | 157 | 5 | 26 | 293 | 172 | 439 | 1.24e-44 | 163 |
| Msa0225870 | AT5G67440.3 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 2.98e-44 | 162 |
| Msa0225870 | AT5G67440.1 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 2.98e-44 | 162 |
| Msa0225870 | AT2G23050.1 | 36.531 | 271 | 142 | 6 | 26 | 295 | 211 | 452 | 4.49e-44 | 160 |
| Msa0225870 | AT3G49970.1 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 4.21e-38 | 144 |
| Msa0225870 | AT3G49970.2 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 4.21e-38 | 144 |
| Msa0225870 | AT2G47860.6 | 36.992 | 246 | 106 | 6 | 30 | 242 | 237 | 466 | 8.33e-34 | 132 |
| Msa0225870 | AT2G47860.4 | 36.992 | 246 | 106 | 6 | 30 | 242 | 214 | 443 | 1.08e-33 | 131 |
| Msa0225870 | AT5G66560.2 | 37.991 | 229 | 125 | 4 | 25 | 242 | 257 | 479 | 4.28e-33 | 130 |
| Msa0225870 | AT3G26490.2 | 33.858 | 254 | 114 | 5 | 26 | 243 | 222 | 457 | 4.42e-33 | 130 |
| Msa0225870 | AT3G08660.2 | 32.365 | 241 | 130 | 4 | 26 | 250 | 200 | 423 | 7.20e-31 | 123 |
| Msa0225870 | AT3G19850.1 | 34.896 | 192 | 124 | 1 | 101 | 291 | 272 | 463 | 3.40e-29 | 120 |
| Msa0225870 | AT3G03510.1 | 33.468 | 248 | 143 | 6 | 51 | 294 | 133 | 362 | 8.11e-29 | 117 |
| Msa0225870 | AT3G22104.4 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa0225870 | AT3G22104.2 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa0225870 | AT3G22104.3 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa0225870 | AT3G22104.1 | 35.567 | 194 | 119 | 3 | 86 | 278 | 232 | 420 | 3.99e-27 | 113 |
| Msa0225870 | AT1G50280.2 | 32.275 | 189 | 126 | 1 | 101 | 287 | 239 | 427 | 3.36e-25 | 107 |
| Msa0225870 | AT1G50280.1 | 32.275 | 189 | 126 | 1 | 101 | 287 | 272 | 460 | 3.49e-25 | 108 |
| Msa0225870 | AT5G17580.2 | 30.233 | 258 | 158 | 4 | 43 | 294 | 217 | 458 | 2.81e-23 | 102 |
| Msa0225870 | AT5G17580.1 | 30.233 | 258 | 158 | 4 | 43 | 294 | 202 | 443 | 3.39e-23 | 102 |
| Msa0225870 | AT5G48130.1 | 32.374 | 139 | 92 | 2 | 191 | 328 | 367 | 504 | 1.57e-18 | 88.6 |
Find 80 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGTTTGGACTTGTTTC+TGG | 0.094629 | 2_1:+76206430 | None:intergenic |
| CATGATGTTGTTACACTTTC+AGG | 0.101878 | 2_1:+76206211 | None:intergenic |
| GATGAAGCTGAAACTGAATT+TGG | 0.156976 | 2_1:-76204247 | Msa0225870:CDS |
| TCTCAGTTTGTTGCACTTGC+TGG | 0.262022 | 2_1:-76205818 | Msa0225870:CDS |
| TCATACTTGTGGGACCCTTT+TGG | 0.268326 | 2_1:-76205984 | Msa0225870:CDS |
| AACTCAACCGTTACGTTGAT+TGG | 0.275986 | 2_1:-76204531 | Msa0225870:CDS |
| AACTGAAGGAAGACGTTTAC+AGG | 0.316073 | 2_1:-76204396 | Msa0225870:CDS |
| TTACCTTGCTGAAGCTGGTT+TGG | 0.320602 | 2_1:-76205858 | Msa0225870:CDS |
| TCCAAAGTTACTTGTTGGTT+TGG | 0.335510 | 2_1:+76206418 | None:intergenic |
| CTTTCAAACATCAAACAAAA+AGG | 0.338570 | 2_1:-76206337 | Msa0225870:CDS |
| TGGATGTTGAGCTTGTTATT+AGG | 0.354204 | 2_1:-76205964 | Msa0225870:CDS |
| CTTTCTTGCTTCGACACGCT+TGG | 0.365749 | 2_1:+76204676 | None:intergenic |
| ATGAAGCTGAAACTGAATTT+GGG | 0.381070 | 2_1:-76204246 | Msa0225870:CDS |
| AGAAGAAAAGTTTCTTCAAA+TGG | 0.382710 | 2_1:-76204321 | Msa0225870:CDS |
| TAACTTTGGAATATTGTTGC+CGG | 0.401723 | 2_1:-76206405 | Msa0225870:CDS |
| AATTTGAATTTGAAGTTTCA+AGG | 0.404146 | 2_1:+76206254 | None:intergenic |
| AATATTCCAAAGTTACTTGT+TGG | 0.406337 | 2_1:+76206413 | None:intergenic |
| AGTTAAAACTGGTGCTGCTT+TGG | 0.406920 | 2_1:-76205906 | Msa0225870:CDS |
| CGAAATGAACACACAACAAA+TGG | 0.410203 | 2_1:-76204428 | Msa0225870:CDS |
| GGTGTTCGTTCCGATTTAAT+CGG | 0.410626 | 2_1:-76206316 | Msa0225870:CDS |
| GCTGAAACTGAATTTGGGTT+TGG | 0.417674 | 2_1:-76204241 | Msa0225870:CDS |
| TTTGGTTAAAGTTGCTAAGT+TGG | 0.421971 | 2_1:-76205888 | Msa0225870:CDS |
| TTGTTATTAGGTTGGTTAAG+AGG | 0.429280 | 2_1:-76205952 | Msa0225870:CDS |
| GAATTTGAAGTTTCAAGGTC+AGG | 0.429853 | 2_1:+76206259 | None:intergenic |
| CATGGAATGGAATCTTTGTC+TGG | 0.430911 | 2_1:+76206142 | None:intergenic |
| ACGGTTGAGTTTCGTTTGTT+CGG | 0.438226 | 2_1:+76204543 | None:intergenic |
| GATCATGATGGAGTTAAAAC+TGG | 0.446409 | 2_1:-76205917 | Msa0225870:CDS |
| TCCAAACCAACAAGTAACTT+TGG | 0.448402 | 2_1:-76206419 | Msa0225870:CDS |
| CAACATCATGGATGAAGAAA+AGG | 0.449234 | 2_1:-76206198 | Msa0225870:CDS |
| GCTGCATGAAGTGAGGCTTC+TGG | 0.449394 | 2_1:+76204613 | None:intergenic |
| ATCTTGAGAATCGAATTTCA+TGG | 0.451747 | 2_1:-76206054 | Msa0225870:CDS |
| GATTGTTACCTTGCTGAAGC+TGG | 0.451910 | 2_1:-76205863 | Msa0225870:CDS |
| CTTCTTTCAGTCATACTTGT+GGG | 0.454989 | 2_1:-76205994 | Msa0225870:CDS |
| TCAGTAGCTCTTGCATGGTT+AGG | 0.455773 | 2_1:+76205788 | None:intergenic |
| TTCAAGGTCAGGGAGCCATT+TGG | 0.459356 | 2_1:+76206270 | None:intergenic |
| GATGATGGAACCGATTAAAT+CGG | 0.462106 | 2_1:+76206306 | None:intergenic |
| TAACAAGCTCAACATCCAAA+AGG | 0.463547 | 2_1:+76205969 | None:intergenic |
| TGTTGAGCTTGTTATTAGGT+TGG | 0.469392 | 2_1:-76205960 | Msa0225870:CDS |
| GGATGCATGCATCTTCGAAC+CGG | 0.476249 | 2_1:+76206386 | None:intergenic |
| CCTTCTTAAAACAGCTAACA+TGG | 0.480139 | 2_1:-76206104 | Msa0225870:CDS |
| GTGCTTCTTTCAGTAGCTTG+AGG | 0.496152 | 2_1:-76204507 | Msa0225870:CDS |
| CAATGTCATGCAAGCACAGA+TGG | 0.500225 | 2_1:-76204359 | Msa0225870:CDS |
| GTTTGGAAGGCAAACACCTA+TGG | 0.502755 | 2_1:-76204224 | Msa0225870:CDS |
| CTAGTACTGTGGTCAAAAGT+AGG | 0.505830 | 2_1:-76204192 | Msa0225870:CDS |
| AACAAGCTCAACATCCAAAA+GGG | 0.506792 | 2_1:+76205970 | None:intergenic |
| AATTTGAAGTTTCAAGGTCA+GGG | 0.510124 | 2_1:+76206260 | None:intergenic |
| CATGCAAGAGCTACTGATGA+TGG | 0.510855 | 2_1:-76205782 | Msa0225870:CDS |
| AAACTGAATTTGGGTTTGGA+AGG | 0.516582 | 2_1:-76204237 | Msa0225870:CDS |
| TTGAGGAGTCCAAGTGGATA+CGG | 0.521600 | 2_1:-76204490 | Msa0225870:CDS |
| AACACACCACCGTATCCACT+TGG | 0.522164 | 2_1:+76204481 | None:intergenic |
| TGGTGGAAGAACACTGACTA+AGG | 0.524858 | 2_1:+76206162 | None:intergenic |
| AAAGTAGGACTCCTCATAAG+TGG | 0.528795 | 2_1:-76204177 | Msa0225870:CDS |
| TACTTTAAGATAAGTGTCAA+TGG | 0.534706 | 2_1:+76205748 | None:intergenic |
| GGAAGCATAGTGAGTGATGA+TGG | 0.534975 | 2_1:+76206291 | None:intergenic |
| AAGGAGGAAGTTGCATGGAA+TGG | 0.540539 | 2_1:+76206129 | None:intergenic |
| CTGAAAGTGTAACAACATCA+TGG | 0.545813 | 2_1:-76206210 | Msa0225870:CDS |
| CGGTGGTGTGTTGGACCCAC+AGG | 0.552148 | 2_1:-76204470 | Msa0225870:CDS |
| TATTAAAAGCATCGGAGAGA+CGG | 0.553022 | 2_1:-76204284 | Msa0225870:CDS |
| AGATGCATGCATCCTTGACA+TGG | 0.556346 | 2_1:-76206377 | Msa0225870:CDS |
| TGTGTAGGTTGATTGATAGC+AGG | 0.557107 | 2_1:-76204645 | Msa0225870:CDS |
| TCACTCACTATGCTTCCAAA+TGG | 0.563233 | 2_1:-76206285 | Msa0225870:CDS |
| GCAAGCACAGATGGACAAGA+TGG | 0.567785 | 2_1:-76204350 | Msa0225870:CDS |
| TGAAATTCGATTCTCAAGAT+CGG | 0.569341 | 2_1:+76206057 | None:intergenic |
| CCTTCTTTCAGTCATACTTG+TGG | 0.572660 | 2_1:-76205995 | Msa0225870:CDS |
| CATCATCAGTAGCTCTTGCA+TGG | 0.574138 | 2_1:+76205783 | None:intergenic |
| TTAGAAAGACACCGTGCCTG+TGG | 0.583694 | 2_1:+76204454 | None:intergenic |
| GGACATGAAAACTAGTACTG+TGG | 0.589920 | 2_1:-76204203 | Msa0225870:CDS |
| TAATGAAGCAATCCATGTCA+AGG | 0.592917 | 2_1:+76206365 | None:intergenic |
| ACTTGAATAACAGCTCTCAC+AGG | 0.608705 | 2_1:+76204574 | None:intergenic |
| CCACAAGTATGACTGAAAGA+AGG | 0.608970 | 2_1:+76205995 | None:intergenic |
| AAGTGGATACGGTGGTGTGT+TGG | 0.620100 | 2_1:-76204479 | Msa0225870:CDS |
| TAGAAAGACACCGTGCCTGT+GGG | 0.630868 | 2_1:+76204455 | None:intergenic |
| TTCATGCAGCTCAAAACGAA+CGG | 0.639540 | 2_1:-76204600 | Msa0225870:CDS |
| AGGCGAAGGAGGAAGTTGCA+TGG | 0.639865 | 2_1:+76206124 | None:intergenic |
| GGAATGGAATCTTTGTCTGG+TGG | 0.645080 | 2_1:+76206145 | None:intergenic |
| CATCCAAACCAGCTTCAGCA+AGG | 0.652544 | 2_1:+76205855 | None:intergenic |
| GTGTGTTGGACCCACAGGCA+CGG | 0.663649 | 2_1:-76204465 | Msa0225870:CDS |
| AAGCACTCCAATCAACGTAA+CGG | 0.670586 | 2_1:+76204524 | None:intergenic |
| AGTAGCTTGAGGAGTCCAAG+TGG | 0.684181 | 2_1:-76204496 | Msa0225870:CDS |
| AGGAGTCCAAGTGGATACGG+TGG | 0.701403 | 2_1:-76204487 | Msa0225870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATATACATATCTATA+AGG | + | chr2_1:76205688-76205707 | None:intergenic | 10.0% |
| !! | AATAAATATACATATCTATA+AGG | + | chr2_1:76205688-76205707 | None:intergenic | 10.0% |
| !!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_1:76204277-76204296 | None:intergenic | 20.0% |
| !!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_1:76204362-76204381 | None:intergenic | 20.0% |
| !! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_1:76205036-76205055 | Msa0225870:intron | 20.0% |
| !!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_1:76205404-76205423 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_1:76205437-76205456 | Msa0225870:intron | 20.0% |
| !! | AATATACATATCTATAAGGA+AGG | + | chr2_1:76205684-76205703 | None:intergenic | 20.0% |
| !!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_1:76205719-76205738 | None:intergenic | 20.0% |
| !!! | ATCTATAATGTTTTTGCAAT+AGG | - | chr2_1:76205909-76205928 | Msa0225870:CDS | 20.0% |
| !!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_1:76204277-76204296 | None:intergenic | 20.0% |
| !!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_1:76204362-76204381 | None:intergenic | 20.0% |
| !! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_1:76205036-76205055 | Msa0225870:intron | 20.0% |
| !!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_1:76205404-76205423 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_1:76205437-76205456 | Msa0225870:intron | 20.0% |
| !! | AATATACATATCTATAAGGA+AGG | + | chr2_1:76205684-76205703 | None:intergenic | 20.0% |
| !!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_1:76205719-76205738 | None:intergenic | 20.0% |
| !!! | ATCTATAATGTTTTTGCAAT+AGG | - | chr2_1:76205909-76205928 | Msa0225870:CDS | 20.0% |
| ! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_1:76204203-76204222 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_1:76204278-76204297 | None:intergenic | 25.0% |
| ! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_1:76204276-76204295 | Msa0225870:CDS | 25.0% |
| !!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_1:76204868-76204887 | None:intergenic | 25.0% |
| !! | TAATTCTTTCTAAAGATCTC+AGG | - | chr2_1:76204921-76204940 | Msa0225870:intron | 25.0% |
| ! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_1:76205039-76205058 | Msa0225870:intron | 25.0% |
| !!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_1:76205484-76205503 | None:intergenic | 25.0% |
| ! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_1:76205483-76205502 | Msa0225870:intron | 25.0% |
| ! | ATTCAAGTAACATACCATTA+AGG | - | chr2_1:76205743-76205762 | Msa0225870:intron | 25.0% |
| ! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_1:76206203-76206222 | Msa0225870:CDS | 25.0% |
| ! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_1:76206292-76206311 | Msa0225870:CDS | 25.0% |
| !!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_1:76206321-76206340 | Msa0225870:CDS | 25.0% |
| ! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_1:76204203-76204222 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_1:76204278-76204297 | None:intergenic | 25.0% |
| ! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_1:76204276-76204295 | Msa0225870:CDS | 25.0% |
| !!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_1:76204868-76204887 | None:intergenic | 25.0% |
| !! | TAATTCTTTCTAAAGATCTC+AGG | - | chr2_1:76204921-76204940 | Msa0225870:intron | 25.0% |
| ! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_1:76205039-76205058 | Msa0225870:intron | 25.0% |
| !!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_1:76205484-76205503 | None:intergenic | 25.0% |
| ! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_1:76205483-76205502 | Msa0225870:intron | 25.0% |
| ! | ATTCAAGTAACATACCATTA+AGG | - | chr2_1:76205743-76205762 | Msa0225870:intron | 25.0% |
| ! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_1:76206203-76206222 | Msa0225870:CDS | 25.0% |
| ! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_1:76206292-76206311 | Msa0225870:CDS | 25.0% |
| !!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_1:76206321-76206340 | Msa0225870:CDS | 25.0% |
| !! | TAACTTTGGAATATTGTTGC+CGG | - | chr2_1:76204208-76204227 | Msa0225870:CDS | 30.0% |
| ! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_1:76204356-76204375 | None:intergenic | 30.0% |
| TGAAATTCGATTCTCAAGAT+CGG | + | chr2_1:76204559-76204578 | None:intergenic | 30.0% | |
| ATCTTGAGAATCGAATTTCA+TGG | - | chr2_1:76204559-76204578 | Msa0225870:CDS | 30.0% | |
| !! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_1:76204661-76204680 | Msa0225870:CDS | 30.0% |
| !!! | TTTTTGAGTTTGGATCATGA+TGG | - | chr2_1:76204684-76204703 | Msa0225870:CDS | 30.0% |
| TTTGGTTAAAGTTGCTAAGT+TGG | - | chr2_1:76204725-76204744 | Msa0225870:intron | 30.0% | |
| ! | CCACACAAGAAACATTTTAT+AGG | + | chr2_1:76205080-76205099 | None:intergenic | 30.0% |
| CCTATAAAATGTTTCTTGTG+TGG | - | chr2_1:76205077-76205096 | Msa0225870:intron | 30.0% | |
| !! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_1:76205395-76205414 | None:intergenic | 30.0% |
| ATGATCCATTTCAGTAAAAC+AGG | + | chr2_1:76205599-76205618 | None:intergenic | 30.0% | |
| CTAATATAGATGTCAAAGCT+TGG | - | chr2_1:76205653-76205672 | Msa0225870:intron | 30.0% | |
| AAGTAACATACCATTAAGGT+TGG | - | chr2_1:76205747-76205766 | Msa0225870:intron | 30.0% | |
| ATTATTGGATCAAGATCAGA+TGG | + | chr2_1:76205820-76205839 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_1:76205953-76205972 | Msa0225870:CDS | 30.0% | |
| ATGAAGCTGAAACTGAATTT+GGG | - | chr2_1:76206367-76206386 | Msa0225870:CDS | 30.0% | |
| !! | TAACTTTGGAATATTGTTGC+CGG | - | chr2_1:76204208-76204227 | Msa0225870:CDS | 30.0% |
| ! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_1:76204356-76204375 | None:intergenic | 30.0% |
| TGAAATTCGATTCTCAAGAT+CGG | + | chr2_1:76204559-76204578 | None:intergenic | 30.0% | |
| ATCTTGAGAATCGAATTTCA+TGG | - | chr2_1:76204559-76204578 | Msa0225870:CDS | 30.0% | |
| !! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_1:76204661-76204680 | Msa0225870:CDS | 30.0% |
| !!! | TTTTTGAGTTTGGATCATGA+TGG | - | chr2_1:76204684-76204703 | Msa0225870:CDS | 30.0% |
| TTTGGTTAAAGTTGCTAAGT+TGG | - | chr2_1:76204725-76204744 | Msa0225870:intron | 30.0% | |
| ! | CCACACAAGAAACATTTTAT+AGG | + | chr2_1:76205080-76205099 | None:intergenic | 30.0% |
| CCTATAAAATGTTTCTTGTG+TGG | - | chr2_1:76205077-76205096 | Msa0225870:intron | 30.0% | |
| !! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_1:76205395-76205414 | None:intergenic | 30.0% |
| ATGATCCATTTCAGTAAAAC+AGG | + | chr2_1:76205599-76205618 | None:intergenic | 30.0% | |
| CTAATATAGATGTCAAAGCT+TGG | - | chr2_1:76205653-76205672 | Msa0225870:intron | 30.0% | |
| AAGTAACATACCATTAAGGT+TGG | - | chr2_1:76205747-76205766 | Msa0225870:intron | 30.0% | |
| ATTATTGGATCAAGATCAGA+TGG | + | chr2_1:76205820-76205839 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_1:76205953-76205972 | Msa0225870:CDS | 30.0% | |
| ATGAAGCTGAAACTGAATTT+GGG | - | chr2_1:76206367-76206386 | Msa0225870:CDS | 30.0% | |
| TCCAAACCAACAAGTAACTT+TGG | - | chr2_1:76204194-76204213 | Msa0225870:CDS | 35.0% | |
| ! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_1:76204198-76204217 | None:intergenic | 35.0% |
| TAATGAAGCAATCCATGTCA+AGG | + | chr2_1:76204251-76204270 | None:intergenic | 35.0% | |
| !! | GATGATGGAACCGATTAAAT+CGG | + | chr2_1:76204310-76204329 | None:intergenic | 35.0% |
| ! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_1:76204357-76204376 | None:intergenic | 35.0% |
| CATGATGTTGTTACACTTTC+AGG | + | chr2_1:76204405-76204424 | None:intergenic | 35.0% | |
| ! | CTGAAAGTGTAACAACATCA+TGG | - | chr2_1:76204403-76204422 | Msa0225870:CDS | 35.0% |
| CAACATCATGGATGAAGAAA+AGG | - | chr2_1:76204415-76204434 | Msa0225870:CDS | 35.0% | |
| !!! | CCATGTTAGCTGTTTTAAGA+AGG | + | chr2_1:76204512-76204531 | None:intergenic | 35.0% |
| CCTTCTTAAAACAGCTAACA+TGG | - | chr2_1:76204509-76204528 | Msa0225870:CDS | 35.0% | |
| CTTCTTTCAGTCATACTTGT+GGG | - | chr2_1:76204619-76204638 | Msa0225870:CDS | 35.0% | |
| AACAAGCTCAACATCCAAAA+GGG | + | chr2_1:76204646-76204665 | None:intergenic | 35.0% | |
| TAACAAGCTCAACATCCAAA+AGG | + | chr2_1:76204647-76204666 | None:intergenic | 35.0% | |
| !! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_1:76204649-76204668 | Msa0225870:CDS | 35.0% |
| !! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_1:76204653-76204672 | Msa0225870:CDS | 35.0% |
| !!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | chr2_1:76204674-76204693 | Msa0225870:CDS | 35.0% |
| ! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_1:76204696-76204715 | Msa0225870:intron | 35.0% |
| AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_1:76205084-76205103 | Msa0225870:intron | 35.0% | |
| ACTCTCTGATATACGTTTGT+TGG | - | chr2_1:76205120-76205139 | Msa0225870:intron | 35.0% | |
| ! | TGATATACGTTTGTTGGACT+TGG | - | chr2_1:76205126-76205145 | Msa0225870:intron | 35.0% |
| TGTGTGACTTTCTAACTAGA+AGG | + | chr2_1:76205155-76205174 | None:intergenic | 35.0% | |
| ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_1:76205267-76205286 | Msa0225870:intron | 35.0% | |
| ACTCACATATATGCGTTTGT+AGG | - | chr2_1:76205296-76205315 | Msa0225870:intron | 35.0% | |
| AATCAAGAGATATCGTTCGT+CGG | - | chr2_1:76205342-76205361 | Msa0225870:intron | 35.0% | |
| !! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_1:76205394-76205413 | None:intergenic | 35.0% |
| TTCCAAATCTAGATAGGACA+TGG | - | chr2_1:76205489-76205508 | Msa0225870:intron | 35.0% | |
| ! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_1:76205516-76205535 | None:intergenic | 35.0% |
| GCAATCAACATTTCTCTACA+TGG | - | chr2_1:76205526-76205545 | Msa0225870:intron | 35.0% | |
| TGCATGCATCAGTATATATG+TGG | + | chr2_1:76205564-76205583 | None:intergenic | 35.0% | |
| ! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_1:76205591-76205610 | Msa0225870:intron | 35.0% |
| TAACATACCATTAAGGTTGG+AGG | - | chr2_1:76205750-76205769 | Msa0225870:intron | 35.0% | |
| !! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_1:76205802-76205821 | None:intergenic | 35.0% |
| GTCAAGACATCGGTAATTAT+TGG | + | chr2_1:76205835-76205854 | None:intergenic | 35.0% | |
| ATTCCATTCAGTCAAGACAT+CGG | + | chr2_1:76205845-76205864 | None:intergenic | 35.0% | |
| AGATTTAGATTGCATGCTGT+TGG | + | chr2_1:76205869-76205888 | None:intergenic | 35.0% | |
| CGAAATGAACACACAACAAA+TGG | - | chr2_1:76206185-76206204 | Msa0225870:CDS | 35.0% | |
| !! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_1:76206329-76206348 | Msa0225870:CDS | 35.0% |
| GATGAAGCTGAAACTGAATT+TGG | - | chr2_1:76206366-76206385 | Msa0225870:CDS | 35.0% | |
| ! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_1:76206376-76206395 | Msa0225870:CDS | 35.0% |
| !!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_1:76206408-76206427 | None:intergenic | 35.0% |
| ! | AGAGATTTTCTCCACTTATG+AGG | + | chr2_1:76206450-76206469 | None:intergenic | 35.0% |
| TCCAAACCAACAAGTAACTT+TGG | - | chr2_1:76204194-76204213 | Msa0225870:CDS | 35.0% | |
| ! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_1:76204198-76204217 | None:intergenic | 35.0% |
| TAATGAAGCAATCCATGTCA+AGG | + | chr2_1:76204251-76204270 | None:intergenic | 35.0% | |
| !! | GATGATGGAACCGATTAAAT+CGG | + | chr2_1:76204310-76204329 | None:intergenic | 35.0% |
| ! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_1:76204357-76204376 | None:intergenic | 35.0% |
| CATGATGTTGTTACACTTTC+AGG | + | chr2_1:76204405-76204424 | None:intergenic | 35.0% | |
| ! | CTGAAAGTGTAACAACATCA+TGG | - | chr2_1:76204403-76204422 | Msa0225870:CDS | 35.0% |
| CAACATCATGGATGAAGAAA+AGG | - | chr2_1:76204415-76204434 | Msa0225870:CDS | 35.0% | |
| !!! | CCATGTTAGCTGTTTTAAGA+AGG | + | chr2_1:76204512-76204531 | None:intergenic | 35.0% |
| CCTTCTTAAAACAGCTAACA+TGG | - | chr2_1:76204509-76204528 | Msa0225870:CDS | 35.0% | |
| CTTCTTTCAGTCATACTTGT+GGG | - | chr2_1:76204619-76204638 | Msa0225870:CDS | 35.0% | |
| AACAAGCTCAACATCCAAAA+GGG | + | chr2_1:76204646-76204665 | None:intergenic | 35.0% | |
| TAACAAGCTCAACATCCAAA+AGG | + | chr2_1:76204647-76204666 | None:intergenic | 35.0% | |
| !! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_1:76204649-76204668 | Msa0225870:CDS | 35.0% |
| !! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_1:76204653-76204672 | Msa0225870:CDS | 35.0% |
| !!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | chr2_1:76204674-76204693 | Msa0225870:CDS | 35.0% |
| ! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_1:76204696-76204715 | Msa0225870:intron | 35.0% |
| AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_1:76205084-76205103 | Msa0225870:intron | 35.0% | |
| ACTCTCTGATATACGTTTGT+TGG | - | chr2_1:76205120-76205139 | Msa0225870:intron | 35.0% | |
| ! | TGATATACGTTTGTTGGACT+TGG | - | chr2_1:76205126-76205145 | Msa0225870:intron | 35.0% |
| TGTGTGACTTTCTAACTAGA+AGG | + | chr2_1:76205155-76205174 | None:intergenic | 35.0% | |
| ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_1:76205267-76205286 | Msa0225870:intron | 35.0% | |
| ACTCACATATATGCGTTTGT+AGG | - | chr2_1:76205296-76205315 | Msa0225870:intron | 35.0% | |
| AATCAAGAGATATCGTTCGT+CGG | - | chr2_1:76205342-76205361 | Msa0225870:intron | 35.0% | |
| !! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_1:76205394-76205413 | None:intergenic | 35.0% |
| TTCCAAATCTAGATAGGACA+TGG | - | chr2_1:76205489-76205508 | Msa0225870:intron | 35.0% | |
| ! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_1:76205516-76205535 | None:intergenic | 35.0% |
| GCAATCAACATTTCTCTACA+TGG | - | chr2_1:76205526-76205545 | Msa0225870:intron | 35.0% | |
| TGCATGCATCAGTATATATG+TGG | + | chr2_1:76205564-76205583 | None:intergenic | 35.0% | |
| ! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_1:76205591-76205610 | Msa0225870:intron | 35.0% |
| TAACATACCATTAAGGTTGG+AGG | - | chr2_1:76205750-76205769 | Msa0225870:intron | 35.0% | |
| !! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_1:76205802-76205821 | None:intergenic | 35.0% |
| GTCAAGACATCGGTAATTAT+TGG | + | chr2_1:76205835-76205854 | None:intergenic | 35.0% | |
| ATTCCATTCAGTCAAGACAT+CGG | + | chr2_1:76205845-76205864 | None:intergenic | 35.0% | |
| AGATTTAGATTGCATGCTGT+TGG | + | chr2_1:76205869-76205888 | None:intergenic | 35.0% | |
| CGAAATGAACACACAACAAA+TGG | - | chr2_1:76206185-76206204 | Msa0225870:CDS | 35.0% | |
| !! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_1:76206329-76206348 | Msa0225870:CDS | 35.0% |
| GATGAAGCTGAAACTGAATT+TGG | - | chr2_1:76206366-76206385 | Msa0225870:CDS | 35.0% | |
| ! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_1:76206376-76206395 | Msa0225870:CDS | 35.0% |
| !!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_1:76206408-76206427 | None:intergenic | 35.0% |
| ! | AGAGATTTTCTCCACTTATG+AGG | + | chr2_1:76206450-76206469 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_1:76204186-76204205 | None:intergenic | 40.0% |
| GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_1:76204297-76204316 | Msa0225870:CDS | 40.0% | |
| TCACTCACTATGCTTCCAAA+TGG | - | chr2_1:76204328-76204347 | Msa0225870:CDS | 40.0% | |
| CATGGAATGGAATCTTTGTC+TGG | + | chr2_1:76204474-76204493 | None:intergenic | 40.0% | |
| !!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | chr2_1:76204506-76204525 | None:intergenic | 40.0% |
| CCACAAGTATGACTGAAAGA+AGG | + | chr2_1:76204621-76204640 | None:intergenic | 40.0% | |
| CCTTCTTTCAGTCATACTTG+TGG | - | chr2_1:76204618-76204637 | Msa0225870:CDS | 40.0% | |
| !! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_1:76204707-76204726 | Msa0225870:intron | 40.0% |
| ATCTCAGGTTCAATTCTTCC+CGG | - | chr2_1:76204936-76204955 | Msa0225870:intron | 40.0% | |
| TAGTCCACTGAAATTGACAC+CGG | + | chr2_1:76204958-76204977 | None:intergenic | 40.0% | |
| !! | TGGACTAGTTTGACGACTTA+AGG | - | chr2_1:76204971-76204990 | Msa0225870:intron | 40.0% |
| !! | GGACTAGTTTGACGACTTAA+GGG | - | chr2_1:76204972-76204991 | Msa0225870:intron | 40.0% |
| TATATCAGAGAGTCTCATGC+TGG | + | chr2_1:76205113-76205132 | None:intergenic | 40.0% | |
| ACCGTTAGATTGACGAAGAT+CGG | - | chr2_1:76205189-76205208 | Msa0225870:intron | 40.0% | |
| TCCGATCTTCGTCAATCTAA+CGG | + | chr2_1:76205193-76205212 | None:intergenic | 40.0% | |
| CATATATGTGAGTCTCATGC+CGG | + | chr2_1:76205289-76205308 | None:intergenic | 40.0% | |
| ATCTCTTGATTGCGTGACTA+CGG | + | chr2_1:76205333-76205352 | None:intergenic | 40.0% | |
| GTCCATGTCCTATCTAGATT+TGG | + | chr2_1:76205494-76205513 | None:intergenic | 40.0% | |
| GCTCTACCGAGCTTAAAATA+TGG | - | chr2_1:76205793-76205812 | Msa0225870:CDS | 40.0% | |
| TTACCGATGTCTTGACTGAA+TGG | - | chr2_1:76205839-76205858 | Msa0225870:CDS | 40.0% | |
| !! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_1:76205968-76205987 | Msa0225870:CDS | 40.0% |
| TTCATGCAGCTCAAAACGAA+CGG | - | chr2_1:76206013-76206032 | Msa0225870:CDS | 40.0% | |
| ACTTGAATAACAGCTCTCAC+AGG | + | chr2_1:76206042-76206061 | None:intergenic | 40.0% | |
| ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_1:76206073-76206092 | None:intergenic | 40.0% | |
| AACTCAACCGTTACGTTGAT+TGG | - | chr2_1:76206082-76206101 | Msa0225870:CDS | 40.0% | |
| AAGCACTCCAATCAACGTAA+CGG | + | chr2_1:76206092-76206111 | None:intergenic | 40.0% | |
| AACTGAAGGAAGACGTTTAC+AGG | - | chr2_1:76206217-76206236 | Msa0225870:CDS | 40.0% | |
| ! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_1:76206372-76206391 | Msa0225870:CDS | 40.0% |
| GGACATGAAAACTAGTACTG+TGG | - | chr2_1:76206410-76206429 | Msa0225870:CDS | 40.0% | |
| CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_1:76206421-76206440 | Msa0225870:CDS | 40.0% | |
| AAAGTAGGACTCCTCATAAG+TGG | - | chr2_1:76206436-76206455 | Msa0225870:CDS | 40.0% | |
| !! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_1:76204186-76204205 | None:intergenic | 40.0% |
| GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_1:76204297-76204316 | Msa0225870:CDS | 40.0% | |
| TCACTCACTATGCTTCCAAA+TGG | - | chr2_1:76204328-76204347 | Msa0225870:CDS | 40.0% | |
| CATGGAATGGAATCTTTGTC+TGG | + | chr2_1:76204474-76204493 | None:intergenic | 40.0% | |
| !!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | chr2_1:76204506-76204525 | None:intergenic | 40.0% |
| CCACAAGTATGACTGAAAGA+AGG | + | chr2_1:76204621-76204640 | None:intergenic | 40.0% | |
| CCTTCTTTCAGTCATACTTG+TGG | - | chr2_1:76204618-76204637 | Msa0225870:CDS | 40.0% | |
| !! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_1:76204707-76204726 | Msa0225870:intron | 40.0% |
| ATCTCAGGTTCAATTCTTCC+CGG | - | chr2_1:76204936-76204955 | Msa0225870:intron | 40.0% | |
| TAGTCCACTGAAATTGACAC+CGG | + | chr2_1:76204958-76204977 | None:intergenic | 40.0% | |
| !! | TGGACTAGTTTGACGACTTA+AGG | - | chr2_1:76204971-76204990 | Msa0225870:intron | 40.0% |
| !! | GGACTAGTTTGACGACTTAA+GGG | - | chr2_1:76204972-76204991 | Msa0225870:intron | 40.0% |
| TATATCAGAGAGTCTCATGC+TGG | + | chr2_1:76205113-76205132 | None:intergenic | 40.0% | |
| ACCGTTAGATTGACGAAGAT+CGG | - | chr2_1:76205189-76205208 | Msa0225870:intron | 40.0% | |
| TCCGATCTTCGTCAATCTAA+CGG | + | chr2_1:76205193-76205212 | None:intergenic | 40.0% | |
| CATATATGTGAGTCTCATGC+CGG | + | chr2_1:76205289-76205308 | None:intergenic | 40.0% | |
| ATCTCTTGATTGCGTGACTA+CGG | + | chr2_1:76205333-76205352 | None:intergenic | 40.0% | |
| GTCCATGTCCTATCTAGATT+TGG | + | chr2_1:76205494-76205513 | None:intergenic | 40.0% | |
| GCTCTACCGAGCTTAAAATA+TGG | - | chr2_1:76205793-76205812 | Msa0225870:CDS | 40.0% | |
| TTACCGATGTCTTGACTGAA+TGG | - | chr2_1:76205839-76205858 | Msa0225870:CDS | 40.0% | |
| !! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_1:76205968-76205987 | Msa0225870:CDS | 40.0% |
| TTCATGCAGCTCAAAACGAA+CGG | - | chr2_1:76206013-76206032 | Msa0225870:CDS | 40.0% | |
| ACTTGAATAACAGCTCTCAC+AGG | + | chr2_1:76206042-76206061 | None:intergenic | 40.0% | |
| ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_1:76206073-76206092 | None:intergenic | 40.0% | |
| AACTCAACCGTTACGTTGAT+TGG | - | chr2_1:76206082-76206101 | Msa0225870:CDS | 40.0% | |
| AAGCACTCCAATCAACGTAA+CGG | + | chr2_1:76206092-76206111 | None:intergenic | 40.0% | |
| AACTGAAGGAAGACGTTTAC+AGG | - | chr2_1:76206217-76206236 | Msa0225870:CDS | 40.0% | |
| ! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_1:76206372-76206391 | Msa0225870:CDS | 40.0% |
| GGACATGAAAACTAGTACTG+TGG | - | chr2_1:76206410-76206429 | Msa0225870:CDS | 40.0% | |
| CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_1:76206421-76206440 | Msa0225870:CDS | 40.0% | |
| AAAGTAGGACTCCTCATAAG+TGG | - | chr2_1:76206436-76206455 | Msa0225870:CDS | 40.0% | |
| AGATGCATGCATCCTTGACA+TGG | - | chr2_1:76204236-76204255 | Msa0225870:CDS | 45.0% | |
| ! | GGAAGCATAGTGAGTGATGA+TGG | + | chr2_1:76204325-76204344 | None:intergenic | 45.0% |
| ! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_1:76204454-76204473 | None:intergenic | 45.0% |
| GGAATGGAATCTTTGTCTGG+TGG | + | chr2_1:76204471-76204490 | None:intergenic | 45.0% | |
| AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_1:76204487-76204506 | None:intergenic | 45.0% | |
| !!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_1:76204503-76204522 | None:intergenic | 45.0% |
| ! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_1:76204629-76204648 | Msa0225870:CDS | 45.0% |
| GATTGTTACCTTGCTGAAGC+TGG | - | chr2_1:76204750-76204769 | Msa0225870:intron | 45.0% | |
| TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_1:76204755-76204774 | Msa0225870:intron | 45.0% | |
| !! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_1:76204795-76204814 | Msa0225870:intron | 45.0% |
| TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_1:76204828-76204847 | None:intergenic | 45.0% | |
| CATCATCAGTAGCTCTTGCA+TGG | + | chr2_1:76204833-76204852 | None:intergenic | 45.0% | |
| CATGCAAGAGCTACTGATGA+TGG | - | chr2_1:76204831-76204850 | Msa0225870:intron | 45.0% | |
| AGTCCACTGAAATTGACACC+GGG | + | chr2_1:76204957-76204976 | None:intergenic | 45.0% | |
| TCTCTTGATTGCGTGACTAC+GGG | + | chr2_1:76205332-76205351 | None:intergenic | 45.0% | |
| ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_1:76205760-76205779 | None:intergenic | 45.0% | |
| !! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_1:76206010-76206029 | None:intergenic | 45.0% |
| GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_1:76206106-76206125 | Msa0225870:CDS | 45.0% | |
| TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_1:76206123-76206142 | Msa0225870:CDS | 45.0% | |
| CAATGTCATGCAAGCACAGA+TGG | - | chr2_1:76206254-76206273 | Msa0225870:CDS | 45.0% | |
| GTTTGGAAGGCAAACACCTA+TGG | - | chr2_1:76206389-76206408 | Msa0225870:CDS | 45.0% | |
| AGATGCATGCATCCTTGACA+TGG | - | chr2_1:76204236-76204255 | Msa0225870:CDS | 45.0% | |
| ! | GGAAGCATAGTGAGTGATGA+TGG | + | chr2_1:76204325-76204344 | None:intergenic | 45.0% |
| ! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_1:76204454-76204473 | None:intergenic | 45.0% |
| GGAATGGAATCTTTGTCTGG+TGG | + | chr2_1:76204471-76204490 | None:intergenic | 45.0% | |
| AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_1:76204487-76204506 | None:intergenic | 45.0% | |
| !!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_1:76204503-76204522 | None:intergenic | 45.0% |
| ! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_1:76204629-76204648 | Msa0225870:CDS | 45.0% |
| GATTGTTACCTTGCTGAAGC+TGG | - | chr2_1:76204750-76204769 | Msa0225870:intron | 45.0% | |
| TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_1:76204755-76204774 | Msa0225870:intron | 45.0% | |
| !! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_1:76204795-76204814 | Msa0225870:intron | 45.0% |
| TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_1:76204828-76204847 | None:intergenic | 45.0% | |
| CATCATCAGTAGCTCTTGCA+TGG | + | chr2_1:76204833-76204852 | None:intergenic | 45.0% | |
| CATGCAAGAGCTACTGATGA+TGG | - | chr2_1:76204831-76204850 | Msa0225870:intron | 45.0% | |
| AGTCCACTGAAATTGACACC+GGG | + | chr2_1:76204957-76204976 | None:intergenic | 45.0% | |
| TCTCTTGATTGCGTGACTAC+GGG | + | chr2_1:76205332-76205351 | None:intergenic | 45.0% | |
| ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_1:76205760-76205779 | None:intergenic | 45.0% | |
| !! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_1:76206010-76206029 | None:intergenic | 45.0% |
| GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_1:76206106-76206125 | Msa0225870:CDS | 45.0% | |
| TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_1:76206123-76206142 | Msa0225870:CDS | 45.0% | |
| CAATGTCATGCAAGCACAGA+TGG | - | chr2_1:76206254-76206273 | Msa0225870:CDS | 45.0% | |
| GTTTGGAAGGCAAACACCTA+TGG | - | chr2_1:76206389-76206408 | Msa0225870:CDS | 45.0% | |
| GGATGCATGCATCTTCGAAC+CGG | + | chr2_1:76204230-76204249 | None:intergenic | 50.0% | |
| TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_1:76204346-76204365 | None:intergenic | 50.0% | |
| CATCCAAACCAGCTTCAGCA+AGG | + | chr2_1:76204761-76204780 | None:intergenic | 50.0% | |
| ! | CTTCCCGGTGTCAATTTCAG+TGG | - | chr2_1:76204951-76204970 | Msa0225870:intron | 50.0% |
| CTTTCTTGCTTCGACACGCT+TGG | + | chr2_1:76205940-76205959 | None:intergenic | 50.0% | |
| AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_1:76206117-76206136 | Msa0225870:CDS | 50.0% | |
| AACACACCACCGTATCCACT+TGG | + | chr2_1:76206135-76206154 | None:intergenic | 50.0% | |
| AAGTGGATACGGTGGTGTGT+TGG | - | chr2_1:76206134-76206153 | Msa0225870:CDS | 50.0% | |
| TAGAAAGACACCGTGCCTGT+GGG | + | chr2_1:76206161-76206180 | None:intergenic | 50.0% | |
| TTAGAAAGACACCGTGCCTG+TGG | + | chr2_1:76206162-76206181 | None:intergenic | 50.0% | |
| GCAAGCACAGATGGACAAGA+TGG | - | chr2_1:76206263-76206282 | Msa0225870:CDS | 50.0% | |
| GGATGCATGCATCTTCGAAC+CGG | + | chr2_1:76204230-76204249 | None:intergenic | 50.0% | |
| TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_1:76204346-76204365 | None:intergenic | 50.0% | |
| CATCCAAACCAGCTTCAGCA+AGG | + | chr2_1:76204761-76204780 | None:intergenic | 50.0% | |
| ! | CTTCCCGGTGTCAATTTCAG+TGG | - | chr2_1:76204951-76204970 | Msa0225870:intron | 50.0% |
| CTTTCTTGCTTCGACACGCT+TGG | + | chr2_1:76205940-76205959 | None:intergenic | 50.0% | |
| AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_1:76206117-76206136 | Msa0225870:CDS | 50.0% | |
| AACACACCACCGTATCCACT+TGG | + | chr2_1:76206135-76206154 | None:intergenic | 50.0% | |
| AAGTGGATACGGTGGTGTGT+TGG | - | chr2_1:76206134-76206153 | Msa0225870:CDS | 50.0% | |
| TAGAAAGACACCGTGCCTGT+GGG | + | chr2_1:76206161-76206180 | None:intergenic | 50.0% | |
| TTAGAAAGACACCGTGCCTG+TGG | + | chr2_1:76206162-76206181 | None:intergenic | 50.0% | |
| GCAAGCACAGATGGACAAGA+TGG | - | chr2_1:76206263-76206282 | Msa0225870:CDS | 50.0% | |
| AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_1:76204492-76204511 | None:intergenic | 55.0% | |
| GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_1:76206003-76206022 | None:intergenic | 55.0% | |
| AGGAGTCCAAGTGGATACGG+TGG | - | chr2_1:76206126-76206145 | Msa0225870:CDS | 55.0% | |
| AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_1:76204492-76204511 | None:intergenic | 55.0% | |
| GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_1:76206003-76206022 | None:intergenic | 55.0% | |
| AGGAGTCCAAGTGGATACGG+TGG | - | chr2_1:76206126-76206145 | Msa0225870:CDS | 55.0% | |
| GTGTGTTGGACCCACAGGCA+CGG | - | chr2_1:76206148-76206167 | Msa0225870:CDS | 60.0% | |
| GTGTGTTGGACCCACAGGCA+CGG | - | chr2_1:76206148-76206167 | Msa0225870:CDS | 60.0% | |
| CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_1:76206143-76206162 | Msa0225870:CDS | 65.0% | |
| CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_1:76206143-76206162 | Msa0225870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 76204159 | 76206476 | 76204159 | ID=Msa0225870;Name=Msa0225870 |
| chr2_1 | mRNA | 76204159 | 76206476 | 76204159 | ID=Msa0225870-mRNA-1;Parent=Msa0225870;Name=Msa0225870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|423 |
| chr2_1 | exon | 76205751 | 76206476 | 76205751 | ID=Msa0225870-mRNA-1:exon:23013;Parent=Msa0225870-mRNA-1 |
| chr2_1 | exon | 76204159 | 76204704 | 76204159 | ID=Msa0225870-mRNA-1:exon:23012;Parent=Msa0225870-mRNA-1 |
| chr2_1 | CDS | 76205751 | 76206476 | 76205751 | ID=Msa0225870-mRNA-1:cds;Parent=Msa0225870-mRNA-1 |
| chr2_1 | CDS | 76204159 | 76204704 | 76204159 | ID=Msa0225870-mRNA-1:cds;Parent=Msa0225870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
