Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341180 | XP_003597825.1 | 95.012 | 421 | 18 | 2 | 1 | 420 | 1 | 419 | 0.0 | 775 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341180 | sp|Q5KS50|NPH3_ORYSJ | 33.867 | 437 | 199 | 10 | 10 | 359 | 256 | 689 | 8.76e-64 | 222 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0148340 | Msa0341180 | 0.800686 | 1.282958e-48 | -8.615850e-47 |
Msa0225870 | Msa0341180 | 0.925893 | 9.888402e-91 | -8.615850e-47 |
Msa0260460 | Msa0341180 | 0.898611 | 4.476489e-77 | -8.615850e-47 |
Msa0341180 | Msa0426330 | 0.817621 | 2.999529e-52 | -8.615850e-47 |
Msa0341180 | Msa0877410 | 0.817091 | 3.946564e-52 | -8.615850e-47 |
Msa0341180 | Msa1073350 | 0.812598 | 3.910743e-51 | -8.615850e-47 |
Msa0341180 | Msa1397450 | 0.892776 | 1.161708e-74 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341180 | MtrunA17_Chr2g0332281 | 95.012 | 421 | 18 | 2 | 1 | 420 | 1 | 419 | 0.0 | 775 |
Msa0341180 | MtrunA17_Chr4g0003891 | 69.059 | 404 | 105 | 8 | 23 | 410 | 45 | 444 | 0.0 | 541 |
Msa0341180 | MtrunA17_Chr2g0279481 | 33.933 | 445 | 224 | 8 | 10 | 390 | 219 | 657 | 2.99e-71 | 237 |
Msa0341180 | MtrunA17_Chr4g0050021 | 35.550 | 436 | 220 | 11 | 7 | 385 | 215 | 646 | 5.46e-71 | 236 |
Msa0341180 | MtrunA17_Chr4g0010091 | 36.339 | 366 | 203 | 8 | 24 | 365 | 211 | 570 | 1.34e-58 | 202 |
Msa0341180 | MtrunA17_Chr5g0412591 | 37.261 | 314 | 149 | 7 | 24 | 294 | 181 | 489 | 3.78e-57 | 198 |
Msa0341180 | MtrunA17_Chr2g0285511 | 31.714 | 391 | 236 | 8 | 24 | 393 | 214 | 594 | 3.96e-55 | 192 |
Msa0341180 | MtrunA17_Chr7g0245201 | 35.340 | 382 | 218 | 11 | 24 | 385 | 236 | 608 | 9.95e-54 | 189 |
Msa0341180 | MtrunA17_Chr2g0303541 | 33.249 | 397 | 212 | 11 | 24 | 379 | 215 | 599 | 3.68e-53 | 188 |
Msa0341180 | MtrunA17_Chr8g0382231 | 34.551 | 301 | 165 | 7 | 24 | 295 | 215 | 512 | 6.62e-53 | 187 |
Msa0341180 | MtrunA17_Chr7g0268781 | 32.775 | 418 | 224 | 13 | 24 | 402 | 213 | 612 | 3.99e-51 | 182 |
Msa0341180 | MtrunA17_Chr1g0195911 | 31.190 | 420 | 224 | 12 | 24 | 397 | 210 | 610 | 5.20e-50 | 179 |
Msa0341180 | MtrunA17_Chr1g0207461 | 32.867 | 429 | 218 | 16 | 24 | 408 | 213 | 615 | 3.63e-49 | 177 |
Msa0341180 | MtrunA17_Chr1g0199631 | 30.026 | 383 | 225 | 9 | 24 | 381 | 176 | 540 | 6.72e-48 | 172 |
Msa0341180 | MtrunA17_Chr1g0181181 | 30.978 | 368 | 202 | 11 | 24 | 357 | 190 | 539 | 9.76e-48 | 172 |
Msa0341180 | MtrunA17_Chr1g0150191 | 37.931 | 290 | 145 | 9 | 24 | 293 | 213 | 487 | 3.45e-47 | 171 |
Msa0341180 | MtrunA17_Chr8g0374011 | 37.124 | 299 | 159 | 6 | 24 | 299 | 227 | 519 | 3.79e-46 | 169 |
Msa0341180 | MtrunA17_Chr5g0401341 | 36.934 | 287 | 150 | 6 | 24 | 294 | 212 | 483 | 6.88e-46 | 167 |
Msa0341180 | MtrunA17_Chr5g0401451 | 33.828 | 337 | 193 | 8 | 24 | 341 | 219 | 544 | 1.17e-45 | 167 |
Msa0341180 | MtrunA17_Chr4g0076521 | 34.448 | 299 | 180 | 6 | 6 | 294 | 183 | 475 | 2.35e-44 | 163 |
Msa0341180 | MtrunA17_Chr4g0053841 | 33.952 | 377 | 205 | 11 | 24 | 369 | 195 | 558 | 7.23e-44 | 162 |
Msa0341180 | MtrunA17_Chr3g0108331 | 30.000 | 400 | 237 | 11 | 24 | 405 | 183 | 557 | 2.47e-43 | 160 |
Msa0341180 | MtrunA17_Chr2g0320691 | 32.180 | 289 | 176 | 5 | 24 | 295 | 212 | 497 | 8.84e-40 | 150 |
Msa0341180 | MtrunA17_Chr1g0191711 | 26.012 | 346 | 221 | 9 | 13 | 350 | 210 | 528 | 1.43e-38 | 146 |
Msa0341180 | MtrunA17_Chr8g0367891 | 32.353 | 306 | 152 | 7 | 24 | 294 | 199 | 484 | 3.14e-38 | 146 |
Msa0341180 | MtrunA17_Chr2g0290741 | 34.397 | 282 | 157 | 7 | 24 | 294 | 201 | 465 | 9.11e-35 | 136 |
Msa0341180 | MtrunA17_Chr5g0432861 | 27.931 | 290 | 189 | 4 | 24 | 295 | 184 | 471 | 5.39e-33 | 131 |
Msa0341180 | MtrunA17_Chr4g0023801 | 31.741 | 293 | 164 | 8 | 106 | 373 | 257 | 538 | 1.40e-28 | 118 |
Msa0341180 | MtrunA17_Chr4g0037661 | 34.184 | 196 | 124 | 3 | 101 | 295 | 276 | 467 | 3.08e-24 | 105 |
Msa0341180 | MtrunA17_Chr1g0163311 | 28.148 | 270 | 171 | 7 | 24 | 292 | 210 | 457 | 3.10e-21 | 96.3 |
Msa0341180 | MtrunA17_Chr2g0280541 | 25.641 | 273 | 181 | 8 | 24 | 295 | 122 | 373 | 7.84e-14 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0341180 | AT3G15570.1 | 56.512 | 453 | 159 | 10 | 1 | 420 | 1 | 448 | 1.22e-167 | 479 |
Msa0341180 | AT1G52770.1 | 55.936 | 438 | 161 | 11 | 12 | 420 | 16 | 450 | 1.81e-159 | 458 |
Msa0341180 | AT5G64330.3 | 35.475 | 358 | 144 | 7 | 24 | 296 | 193 | 548 | 3.50e-60 | 206 |
Msa0341180 | AT5G64330.2 | 35.475 | 358 | 144 | 7 | 24 | 296 | 252 | 607 | 1.02e-59 | 206 |
Msa0341180 | AT5G03250.2 | 34.828 | 379 | 203 | 10 | 24 | 378 | 107 | 465 | 7.47e-58 | 197 |
Msa0341180 | AT5G03250.1 | 35.000 | 380 | 201 | 11 | 24 | 378 | 219 | 577 | 8.04e-57 | 197 |
Msa0341180 | AT5G64330.1 | 34.473 | 351 | 168 | 7 | 92 | 385 | 373 | 718 | 1.18e-53 | 191 |
Msa0341180 | AT5G13600.1 | 32.967 | 364 | 214 | 9 | 24 | 369 | 210 | 561 | 3.24e-52 | 185 |
Msa0341180 | AT1G30440.1 | 31.771 | 384 | 216 | 9 | 24 | 367 | 216 | 593 | 2.03e-51 | 184 |
Msa0341180 | AT3G08660.3 | 31.944 | 360 | 195 | 8 | 24 | 358 | 138 | 472 | 1.03e-49 | 177 |
Msa0341180 | AT3G08660.1 | 31.944 | 360 | 195 | 8 | 24 | 358 | 198 | 532 | 2.55e-49 | 177 |
Msa0341180 | AT5G48800.1 | 33.854 | 384 | 202 | 11 | 24 | 377 | 221 | 582 | 1.35e-48 | 175 |
Msa0341180 | AT5G66560.3 | 38.141 | 312 | 169 | 8 | 13 | 312 | 218 | 517 | 1.64e-48 | 176 |
Msa0341180 | AT5G66560.4 | 38.141 | 312 | 169 | 8 | 13 | 312 | 208 | 507 | 1.86e-48 | 175 |
Msa0341180 | AT5G66560.1 | 38.141 | 312 | 169 | 8 | 13 | 312 | 247 | 546 | 2.63e-48 | 175 |
Msa0341180 | AT3G26490.1 | 35.714 | 308 | 141 | 7 | 24 | 294 | 220 | 507 | 2.87e-48 | 174 |
Msa0341180 | AT3G26490.3 | 35.714 | 308 | 141 | 7 | 24 | 294 | 220 | 507 | 2.87e-48 | 174 |
Msa0341180 | AT3G26490.4 | 35.714 | 308 | 141 | 7 | 24 | 294 | 220 | 507 | 2.87e-48 | 174 |
Msa0341180 | AT2G30520.2 | 33.724 | 341 | 212 | 5 | 24 | 352 | 141 | 479 | 3.84e-48 | 173 |
Msa0341180 | AT2G30520.3 | 33.724 | 341 | 212 | 5 | 24 | 352 | 141 | 479 | 3.84e-48 | 173 |
Msa0341180 | AT2G30520.1 | 33.724 | 341 | 212 | 5 | 24 | 352 | 189 | 527 | 7.67e-48 | 173 |
Msa0341180 | AT5G67385.4 | 36.396 | 283 | 159 | 7 | 24 | 295 | 158 | 430 | 1.94e-47 | 171 |
Msa0341180 | AT5G67385.5 | 36.396 | 283 | 159 | 7 | 24 | 295 | 158 | 430 | 1.94e-47 | 171 |
Msa0341180 | AT5G67385.2 | 36.396 | 283 | 159 | 7 | 24 | 295 | 158 | 430 | 1.94e-47 | 171 |
Msa0341180 | AT5G67385.3 | 36.396 | 283 | 159 | 7 | 24 | 295 | 158 | 430 | 1.94e-47 | 171 |
Msa0341180 | AT5G67385.1 | 36.396 | 283 | 159 | 7 | 24 | 295 | 203 | 475 | 3.65e-47 | 171 |
Msa0341180 | AT1G03010.2 | 34.605 | 367 | 181 | 13 | 24 | 341 | 180 | 536 | 4.20e-47 | 171 |
Msa0341180 | AT1G03010.1 | 33.083 | 399 | 208 | 13 | 24 | 373 | 207 | 595 | 6.66e-47 | 171 |
Msa0341180 | AT1G03010.3 | 31.944 | 432 | 229 | 15 | 24 | 400 | 206 | 627 | 7.28e-47 | 171 |
Msa0341180 | AT2G47860.5 | 31.910 | 398 | 207 | 11 | 24 | 375 | 90 | 469 | 3.02e-46 | 167 |
Msa0341180 | AT2G47860.2 | 31.910 | 398 | 207 | 11 | 24 | 375 | 90 | 469 | 3.02e-46 | 167 |
Msa0341180 | AT2G47860.1 | 31.910 | 398 | 207 | 11 | 24 | 375 | 208 | 587 | 1.41e-45 | 167 |
Msa0341180 | AT2G47860.3 | 31.910 | 398 | 207 | 11 | 24 | 375 | 231 | 610 | 1.87e-45 | 167 |
Msa0341180 | AT4G31820.2 | 36.585 | 287 | 140 | 8 | 24 | 296 | 159 | 417 | 1.18e-44 | 163 |
Msa0341180 | AT4G31820.1 | 36.585 | 287 | 140 | 8 | 24 | 296 | 212 | 470 | 2.53e-44 | 163 |
Msa0341180 | AT5G10250.2 | 29.973 | 377 | 227 | 9 | 23 | 371 | 212 | 579 | 1.01e-42 | 159 |
Msa0341180 | AT2G14820.2 | 31.351 | 370 | 203 | 9 | 24 | 360 | 209 | 560 | 1.30e-42 | 159 |
Msa0341180 | AT2G14820.1 | 31.351 | 370 | 203 | 9 | 24 | 360 | 209 | 560 | 1.30e-42 | 159 |
Msa0341180 | AT5G47800.3 | 33.667 | 300 | 182 | 6 | 4 | 292 | 181 | 474 | 1.44e-42 | 158 |
Msa0341180 | AT5G47800.1 | 33.667 | 300 | 182 | 6 | 4 | 292 | 181 | 474 | 1.44e-42 | 158 |
Msa0341180 | AT5G47800.4 | 33.667 | 300 | 182 | 6 | 4 | 292 | 181 | 474 | 1.44e-42 | 158 |
Msa0341180 | AT1G67900.5 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT1G67900.1 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT1G67900.3 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT1G67900.6 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT1G67900.2 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT1G67900.4 | 33.028 | 327 | 178 | 5 | 7 | 294 | 185 | 509 | 1.54e-42 | 159 |
Msa0341180 | AT5G47800.2 | 33.667 | 300 | 182 | 6 | 4 | 292 | 294 | 587 | 4.92e-42 | 158 |
Msa0341180 | AT5G10250.1 | 29.700 | 367 | 226 | 9 | 23 | 371 | 212 | 564 | 2.39e-41 | 155 |
Msa0341180 | AT3G08570.1 | 29.477 | 363 | 219 | 9 | 24 | 360 | 212 | 563 | 9.25e-41 | 154 |
Msa0341180 | AT3G44820.1 | 29.255 | 376 | 222 | 9 | 24 | 360 | 213 | 583 | 1.92e-40 | 153 |
Msa0341180 | AT4G37590.1 | 34.783 | 276 | 153 | 7 | 24 | 296 | 216 | 467 | 1.39e-38 | 147 |
Msa0341180 | AT3G50840.2 | 31.667 | 360 | 231 | 7 | 24 | 382 | 160 | 505 | 3.22e-38 | 145 |
Msa0341180 | AT3G50840.3 | 31.667 | 360 | 231 | 7 | 24 | 382 | 160 | 505 | 3.22e-38 | 145 |
Msa0341180 | AT3G50840.1 | 31.667 | 360 | 231 | 7 | 24 | 382 | 196 | 541 | 4.57e-38 | 145 |
Msa0341180 | AT5G67440.2 | 34.164 | 281 | 164 | 7 | 24 | 294 | 170 | 439 | 1.26e-36 | 141 |
Msa0341180 | AT5G67440.3 | 34.164 | 281 | 164 | 7 | 24 | 294 | 207 | 476 | 1.82e-36 | 141 |
Msa0341180 | AT5G67440.1 | 34.164 | 281 | 164 | 7 | 24 | 294 | 207 | 476 | 1.82e-36 | 141 |
Msa0341180 | AT2G23050.2 | 33.455 | 275 | 150 | 8 | 24 | 296 | 93 | 336 | 1.92e-36 | 137 |
Msa0341180 | AT2G23050.1 | 33.455 | 275 | 150 | 8 | 24 | 296 | 209 | 452 | 8.42e-36 | 138 |
Msa0341180 | AT3G49970.1 | 30.502 | 259 | 162 | 7 | 24 | 279 | 151 | 394 | 9.14e-32 | 127 |
Msa0341180 | AT3G49970.2 | 30.502 | 259 | 162 | 7 | 24 | 279 | 151 | 394 | 9.14e-32 | 127 |
Msa0341180 | AT3G26490.2 | 32.927 | 246 | 111 | 5 | 24 | 233 | 220 | 447 | 6.04e-30 | 122 |
Msa0341180 | AT5G66560.2 | 34.914 | 232 | 132 | 5 | 13 | 233 | 247 | 470 | 3.18e-27 | 114 |
Msa0341180 | AT2G47860.6 | 34.156 | 243 | 111 | 6 | 24 | 233 | 231 | 457 | 7.47e-27 | 112 |
Msa0341180 | AT2G47860.4 | 34.156 | 243 | 111 | 6 | 24 | 233 | 208 | 434 | 1.07e-26 | 112 |
Msa0341180 | AT3G08660.2 | 30.088 | 226 | 125 | 4 | 24 | 233 | 198 | 406 | 4.30e-24 | 104 |
Msa0341180 | AT3G19850.1 | 27.106 | 273 | 177 | 5 | 24 | 292 | 209 | 463 | 1.30e-22 | 100 |
Msa0341180 | AT3G22104.4 | 33.673 | 196 | 121 | 5 | 86 | 279 | 157 | 345 | 8.87e-22 | 97.4 |
Msa0341180 | AT3G22104.2 | 33.673 | 196 | 121 | 5 | 86 | 279 | 157 | 345 | 8.87e-22 | 97.4 |
Msa0341180 | AT3G22104.3 | 33.673 | 196 | 121 | 5 | 86 | 279 | 157 | 345 | 8.87e-22 | 97.4 |
Msa0341180 | AT3G22104.1 | 33.673 | 196 | 121 | 5 | 86 | 279 | 232 | 420 | 8.99e-22 | 98.2 |
Msa0341180 | AT3G03510.1 | 30.952 | 252 | 145 | 7 | 51 | 295 | 133 | 362 | 4.25e-21 | 95.5 |
Msa0341180 | AT1G50280.2 | 25.818 | 275 | 178 | 7 | 24 | 288 | 169 | 427 | 1.89e-17 | 84.7 |
Msa0341180 | AT1G50280.1 | 25.818 | 275 | 178 | 7 | 24 | 288 | 202 | 460 | 2.04e-17 | 84.7 |
Msa0341180 | AT5G17580.1 | 27.099 | 262 | 162 | 5 | 43 | 295 | 202 | 443 | 1.07e-14 | 76.6 |
Msa0341180 | AT5G17580.2 | 27.099 | 262 | 162 | 5 | 43 | 295 | 217 | 458 | 1.11e-14 | 76.6 |
Msa0341180 | AT5G48130.1 | 24.606 | 317 | 197 | 12 | 24 | 329 | 219 | 504 | 1.76e-14 | 75.9 |
Find 84 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGGTTTGGACTTGTTTC+TGG | 0.094629 | 2_4:+62595245 | None:intergenic |
CATGATGCTGTTACACTTTC+AGG | 0.126707 | 2_4:+62595026 | None:intergenic |
GATGAAGCTGAAACTGAATT+TGG | 0.156976 | 2_4:-62593043 | Msa0341180:CDS |
TCTCAGTTTGTTGCACTTGC+TGG | 0.262022 | 2_4:-62594633 | Msa0341180:CDS |
TCATACTTGTGGGACCCTTT+TGG | 0.268326 | 2_4:-62594799 | Msa0341180:CDS |
AACTCAACCGTTACGTTGAT+TGG | 0.275986 | 2_4:-62593327 | Msa0341180:CDS |
AACTGAAGGAAGACGTTTAC+AGG | 0.316073 | 2_4:-62593192 | Msa0341180:CDS |
TTACCTTGCTGAAGCTGGTT+TGG | 0.320602 | 2_4:-62594673 | Msa0341180:CDS |
TCCAAAGTTACTTGTTGGTT+TGG | 0.335510 | 2_4:+62595233 | None:intergenic |
CTTTCAAACATCAAACAAAA+AGG | 0.338570 | 2_4:-62595152 | Msa0341180:CDS |
AATAAATATACATATCTATA+AGG | 0.350061 | 2_4:+62593744 | None:intergenic |
TGGATGTTGAGCTTGTTATT+AGG | 0.354204 | 2_4:-62594779 | Msa0341180:CDS |
CTTTCTTGCTTCGACACGCT+TGG | 0.365749 | 2_4:+62593472 | None:intergenic |
ATCTTGAGAATCAAATTTCA+TGG | 0.372033 | 2_4:-62594869 | Msa0341180:CDS |
TAACTTTGGAATATTGTTGC+TGG | 0.379039 | 2_4:-62595220 | Msa0341180:CDS |
ATGAAGCTGAAACTGAATTT+GGG | 0.381070 | 2_4:-62593042 | Msa0341180:CDS |
AACTGGTGCTGCTTTGGTTA+AGG | 0.381744 | 2_4:-62594715 | Msa0341180:CDS |
AGAAGAAAAGTTTCTTCAAA+TGG | 0.382710 | 2_4:-62593117 | Msa0341180:CDS |
AATTTGAATTTGAAGTTTCA+AGG | 0.404146 | 2_4:+62595069 | None:intergenic |
AATATTCCAAAGTTACTTGT+TGG | 0.406337 | 2_4:+62595228 | None:intergenic |
AGTTAAAACTGGTGCTGCTT+TGG | 0.406920 | 2_4:-62594721 | Msa0341180:CDS |
CGAAATGAACACACAACAAA+TGG | 0.410203 | 2_4:-62593224 | Msa0341180:CDS |
GGTGTTCGTTCCGATTTAAT+CGG | 0.410626 | 2_4:-62595131 | Msa0341180:CDS |
GCTGAAACTGAATTTGGGTT+TGG | 0.417674 | 2_4:-62593037 | Msa0341180:CDS |
ACAGTGAAAGCCTCTCTATC+AGG | 0.425747 | 2_4:+62592938 | None:intergenic |
TTGTTATTAGGTTGGTTAAG+AGG | 0.429280 | 2_4:-62594767 | Msa0341180:CDS |
GAATTTGAAGTTTCAAGGTC+AGG | 0.429853 | 2_4:+62595074 | None:intergenic |
CATGGAATGGAATCTTTGTC+TGG | 0.430911 | 2_4:+62594957 | None:intergenic |
ACGGTTGAGTTTCGTTTGTT+CGG | 0.438226 | 2_4:+62593339 | None:intergenic |
CAGCATCATGGATGAAGAAA+AGG | 0.445106 | 2_4:-62595013 | Msa0341180:CDS |
GATCATGATGGAGTTAAAAC+TGG | 0.446409 | 2_4:-62594732 | Msa0341180:CDS |
TTTGGTTAAGGTTGCTAAGT+TGG | 0.446507 | 2_4:-62594703 | Msa0341180:CDS |
TCCAAACCAACAAGTAACTT+TGG | 0.448402 | 2_4:-62595234 | Msa0341180:CDS |
GCTGCATGAAGTGAGGCTTC+TGG | 0.449394 | 2_4:+62593409 | None:intergenic |
GATTGTTACCTTGCTGAAGC+TGG | 0.451910 | 2_4:-62594678 | Msa0341180:CDS |
CTTCTTTCAGTCATACTTGT+GGG | 0.454989 | 2_4:-62594809 | Msa0341180:CDS |
TCAGTAGCTCTTGCATGGTT+AGG | 0.455773 | 2_4:+62594603 | None:intergenic |
TTCAAGGTCAGGGAGCCATT+TGG | 0.459356 | 2_4:+62595085 | None:intergenic |
GATGATGGAACCGATTAAAT+CGG | 0.462106 | 2_4:+62595121 | None:intergenic |
TAACAAGCTCAACATCCAAA+AGG | 0.463547 | 2_4:+62594784 | None:intergenic |
TGTTGAGCTTGTTATTAGGT+TGG | 0.469392 | 2_4:-62594775 | Msa0341180:CDS |
TGAAATTTGATTCTCAAGAT+CGG | 0.493137 | 2_4:+62594872 | None:intergenic |
GTGCTTCTTTCAGTAGCTTG+AGG | 0.496152 | 2_4:-62593303 | Msa0341180:CDS |
CAATGTCATGCAAGCACAGA+TGG | 0.500225 | 2_4:-62593155 | Msa0341180:CDS |
CTAATATAGATGTCAAAGCT+TGG | 0.502673 | 2_4:-62593776 | Msa0341180:intron |
GTTTGGAAGGCAAACACCTA+TGG | 0.502755 | 2_4:-62593020 | Msa0341180:CDS |
CCTTCTTAAAACAGCAAACA+TGG | 0.504569 | 2_4:-62594919 | Msa0341180:CDS |
CTAGTACTGTGGTCAAAAGT+AGG | 0.505830 | 2_4:-62592988 | Msa0341180:CDS |
AACAAGCTCAACATCCAAAA+GGG | 0.506792 | 2_4:+62594785 | None:intergenic |
AAAGTAGGACTCCTCATAAG+TGG | 0.509603 | 2_4:-62592973 | Msa0341180:CDS |
AATTTGAAGTTTCAAGGTCA+GGG | 0.510124 | 2_4:+62595075 | None:intergenic |
CATGCAAGAGCTACTGATGA+TGG | 0.510855 | 2_4:-62594597 | Msa0341180:intron |
AAACTGAATTTGGGTTTGGA+AGG | 0.516582 | 2_4:-62593033 | Msa0341180:CDS |
TTGAGGAGTCCAAGTGGATA+CGG | 0.521600 | 2_4:-62593286 | Msa0341180:CDS |
AACACACCACCGTATCCACT+TGG | 0.522164 | 2_4:+62593277 | None:intergenic |
TGGTGGAAGAACACTGACTA+AGG | 0.524858 | 2_4:+62594977 | None:intergenic |
GGAAGCATAGTGAGTGATGA+TGG | 0.534975 | 2_4:+62595106 | None:intergenic |
CTGAAAGTGTAACAGCATCA+TGG | 0.536672 | 2_4:-62595025 | Msa0341180:CDS |
AAGGAGGAAGTTGCATGGAA+TGG | 0.540539 | 2_4:+62594944 | None:intergenic |
CGGTGGTGTGTTGGACCCAC+AGG | 0.552148 | 2_4:-62593266 | Msa0341180:CDS |
TATTAAAAGCATCGGAGAGA+CGG | 0.553022 | 2_4:-62593080 | Msa0341180:CDS |
TGTGTAGGTTGATTGATAGC+AGG | 0.557107 | 2_4:-62593441 | Msa0341180:CDS |
TCACTCACTATGCTTCCAAA+TGG | 0.563233 | 2_4:-62595100 | Msa0341180:CDS |
GCAAGCACAGATGGACAAGA+TGG | 0.567785 | 2_4:-62593146 | Msa0341180:CDS |
AATATACATATCTATAAGGA+AGG | 0.570884 | 2_4:+62593748 | None:intergenic |
CCTTCTTTCAGTCATACTTG+TGG | 0.572660 | 2_4:-62594810 | Msa0341180:CDS |
CATCATCAGTAGCTCTTGCA+TGG | 0.574138 | 2_4:+62594598 | None:intergenic |
AGATGCATGCATCCTTGACA+TGG | 0.577074 | 2_4:-62595192 | Msa0341180:CDS |
TTAGAAAGACACCGTGCCTG+TGG | 0.583694 | 2_4:+62593250 | None:intergenic |
GGACATGAAAACTAGTACTG+TGG | 0.589920 | 2_4:-62592999 | Msa0341180:CDS |
TAATGAAGCAATCCATGTCA+AGG | 0.592917 | 2_4:+62595180 | None:intergenic |
AAATCTCTGTCCTGATAGAG+AGG | 0.598818 | 2_4:-62592948 | Msa0341180:CDS |
ACTTGAATAACAGCTCTCAC+AGG | 0.608705 | 2_4:+62593370 | None:intergenic |
CCACAAGTATGACTGAAAGA+AGG | 0.608970 | 2_4:+62594810 | None:intergenic |
AAGTGGATACGGTGGTGTGT+TGG | 0.620100 | 2_4:-62593275 | Msa0341180:CDS |
TAGAAAGACACCGTGCCTGT+GGG | 0.630868 | 2_4:+62593251 | None:intergenic |
TTCATGCAGCTCAAAACGAA+CGG | 0.639540 | 2_4:-62593396 | Msa0341180:CDS |
AGGCGAAGGAGGAAGTTGCA+TGG | 0.639865 | 2_4:+62594939 | None:intergenic |
GGAATGGAATCTTTGTCTGG+TGG | 0.645080 | 2_4:+62594960 | None:intergenic |
CATCCAAACCAGCTTCAGCA+AGG | 0.652544 | 2_4:+62594670 | None:intergenic |
GTGTGTTGGACCCACAGGCA+CGG | 0.663649 | 2_4:-62593261 | Msa0341180:CDS |
AAGCACTCCAATCAACGTAA+CGG | 0.670586 | 2_4:+62593320 | None:intergenic |
AGTAGCTTGAGGAGTCCAAG+TGG | 0.684181 | 2_4:-62593292 | Msa0341180:CDS |
AGGAGTCCAAGTGGATACGG+TGG | 0.701403 | 2_4:-62593283 | Msa0341180:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAATATACATATCTATA+AGG | + | chr2_4:62594447-62594466 | None:intergenic | 10.0% |
!!! | TATTTATTTATTTTTGCAAT+AGG | - | chr2_4:62594688-62594707 | Msa0341180:CDS | 10.0% |
!! | AATAAATATACATATCTATA+AGG | + | chr2_4:62594447-62594466 | None:intergenic | 10.0% |
!!! | TATTTATTTATTTTTGCAAT+AGG | - | chr2_4:62594688-62594707 | Msa0341180:CDS | 10.0% |
!!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_4:62593037-62593056 | None:intergenic | 20.0% |
!!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_4:62593122-62593141 | None:intergenic | 20.0% |
!! | TAATTCTTTATAAAGATCTC+AGG | - | chr2_4:62593680-62593699 | Msa0341180:intron | 20.0% |
!! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_4:62593795-62593814 | Msa0341180:intron | 20.0% |
!!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_4:62594163-62594182 | None:intergenic | 20.0% |
!!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_4:62594196-62594215 | Msa0341180:intron | 20.0% |
!! | AATATACATATCTATAAGGA+AGG | + | chr2_4:62594443-62594462 | None:intergenic | 20.0% |
!!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_4:62594478-62594497 | None:intergenic | 20.0% |
!!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_4:62593037-62593056 | None:intergenic | 20.0% |
!!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_4:62593122-62593141 | None:intergenic | 20.0% |
!! | TAATTCTTTATAAAGATCTC+AGG | - | chr2_4:62593680-62593699 | Msa0341180:intron | 20.0% |
!! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_4:62593795-62593814 | Msa0341180:intron | 20.0% |
!!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_4:62594163-62594182 | None:intergenic | 20.0% |
!!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_4:62594196-62594215 | Msa0341180:intron | 20.0% |
!! | AATATACATATCTATAAGGA+AGG | + | chr2_4:62594443-62594462 | None:intergenic | 20.0% |
!!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_4:62594478-62594497 | None:intergenic | 20.0% |
! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_4:62592963-62592982 | None:intergenic | 25.0% |
!!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_4:62593038-62593057 | None:intergenic | 25.0% |
! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_4:62593036-62593055 | Msa0341180:CDS | 25.0% |
! | TGAAATTTGATTCTCAAGAT+CGG | + | chr2_4:62593319-62593338 | None:intergenic | 25.0% |
! | ATCTTGAGAATCAAATTTCA+TGG | - | chr2_4:62593319-62593338 | Msa0341180:CDS | 25.0% |
!!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_4:62593628-62593647 | None:intergenic | 25.0% |
! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_4:62593798-62593817 | Msa0341180:intron | 25.0% |
!!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_4:62594243-62594262 | None:intergenic | 25.0% |
! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_4:62594242-62594261 | Msa0341180:intron | 25.0% |
! | ATTCAAGTAACATACCATTA+AGG | - | chr2_4:62594502-62594521 | Msa0341180:intron | 25.0% |
! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_4:62594982-62595001 | Msa0341180:CDS | 25.0% |
! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_4:62595071-62595090 | Msa0341180:CDS | 25.0% |
!!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_4:62595100-62595119 | Msa0341180:CDS | 25.0% |
! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_4:62592963-62592982 | None:intergenic | 25.0% |
!!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_4:62593038-62593057 | None:intergenic | 25.0% |
! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_4:62593036-62593055 | Msa0341180:CDS | 25.0% |
! | TGAAATTTGATTCTCAAGAT+CGG | + | chr2_4:62593319-62593338 | None:intergenic | 25.0% |
! | ATCTTGAGAATCAAATTTCA+TGG | - | chr2_4:62593319-62593338 | Msa0341180:CDS | 25.0% |
!!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_4:62593628-62593647 | None:intergenic | 25.0% |
! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_4:62593798-62593817 | Msa0341180:intron | 25.0% |
!!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_4:62594243-62594262 | None:intergenic | 25.0% |
! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_4:62594242-62594261 | Msa0341180:intron | 25.0% |
! | ATTCAAGTAACATACCATTA+AGG | - | chr2_4:62594502-62594521 | Msa0341180:intron | 25.0% |
! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_4:62594982-62595001 | Msa0341180:CDS | 25.0% |
! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_4:62595071-62595090 | Msa0341180:CDS | 25.0% |
!!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_4:62595100-62595119 | Msa0341180:CDS | 25.0% |
!! | TAACTTTGGAATATTGTTGC+TGG | - | chr2_4:62592968-62592987 | Msa0341180:CDS | 30.0% |
! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_4:62593116-62593135 | None:intergenic | 30.0% |
!! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_4:62593421-62593440 | Msa0341180:CDS | 30.0% |
!!! | TTTTTGAGTTTGGATCATGA+TGG | - | chr2_4:62593444-62593463 | Msa0341180:CDS | 30.0% |
! | CCACACAAGAAACATTTTAT+AGG | + | chr2_4:62593839-62593858 | None:intergenic | 30.0% |
CCTATAAAATGTTTCTTGTG+TGG | - | chr2_4:62593836-62593855 | Msa0341180:intron | 30.0% | |
!! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_4:62594154-62594173 | None:intergenic | 30.0% |
ATGATCCATTTCAGTAAAAC+AGG | + | chr2_4:62594358-62594377 | None:intergenic | 30.0% | |
CTAATATAGATGTCAAAGCT+TGG | - | chr2_4:62594412-62594431 | Msa0341180:intron | 30.0% | |
AAGTAACATACCATTAAGGT+TGG | - | chr2_4:62594506-62594525 | Msa0341180:intron | 30.0% | |
ATTATTGGATCAAGATCAGA+TGG | + | chr2_4:62594579-62594598 | None:intergenic | 30.0% | |
AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_4:62594732-62594751 | Msa0341180:CDS | 30.0% | |
ATGAAGCTGAAACTGAATTT+GGG | - | chr2_4:62595146-62595165 | Msa0341180:CDS | 30.0% | |
!! | TAACTTTGGAATATTGTTGC+TGG | - | chr2_4:62592968-62592987 | Msa0341180:CDS | 30.0% |
! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_4:62593116-62593135 | None:intergenic | 30.0% |
!! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_4:62593421-62593440 | Msa0341180:CDS | 30.0% |
!!! | TTTTTGAGTTTGGATCATGA+TGG | - | chr2_4:62593444-62593463 | Msa0341180:CDS | 30.0% |
! | CCACACAAGAAACATTTTAT+AGG | + | chr2_4:62593839-62593858 | None:intergenic | 30.0% |
CCTATAAAATGTTTCTTGTG+TGG | - | chr2_4:62593836-62593855 | Msa0341180:intron | 30.0% | |
!! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_4:62594154-62594173 | None:intergenic | 30.0% |
ATGATCCATTTCAGTAAAAC+AGG | + | chr2_4:62594358-62594377 | None:intergenic | 30.0% | |
CTAATATAGATGTCAAAGCT+TGG | - | chr2_4:62594412-62594431 | Msa0341180:intron | 30.0% | |
AAGTAACATACCATTAAGGT+TGG | - | chr2_4:62594506-62594525 | Msa0341180:intron | 30.0% | |
ATTATTGGATCAAGATCAGA+TGG | + | chr2_4:62594579-62594598 | None:intergenic | 30.0% | |
AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_4:62594732-62594751 | Msa0341180:CDS | 30.0% | |
ATGAAGCTGAAACTGAATTT+GGG | - | chr2_4:62595146-62595165 | Msa0341180:CDS | 30.0% | |
TCCAAACCAACAAGTAACTT+TGG | - | chr2_4:62592954-62592973 | Msa0341180:CDS | 35.0% | |
! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_4:62592958-62592977 | None:intergenic | 35.0% |
TAATGAAGCAATCCATGTCA+AGG | + | chr2_4:62593011-62593030 | None:intergenic | 35.0% | |
!! | GATGATGGAACCGATTAAAT+CGG | + | chr2_4:62593070-62593089 | None:intergenic | 35.0% |
! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_4:62593117-62593136 | None:intergenic | 35.0% |
!!! | CCATGTTTGCTGTTTTAAGA+AGG | + | chr2_4:62593272-62593291 | None:intergenic | 35.0% |
CCTTCTTAAAACAGCAAACA+TGG | - | chr2_4:62593269-62593288 | Msa0341180:CDS | 35.0% | |
CTTCTTTCAGTCATACTTGT+GGG | - | chr2_4:62593379-62593398 | Msa0341180:CDS | 35.0% | |
AACAAGCTCAACATCCAAAA+GGG | + | chr2_4:62593406-62593425 | None:intergenic | 35.0% | |
TAACAAGCTCAACATCCAAA+AGG | + | chr2_4:62593407-62593426 | None:intergenic | 35.0% | |
!! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_4:62593409-62593428 | Msa0341180:CDS | 35.0% |
!! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_4:62593413-62593432 | Msa0341180:CDS | 35.0% |
!!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | chr2_4:62593434-62593453 | Msa0341180:CDS | 35.0% |
! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_4:62593456-62593475 | Msa0341180:CDS | 35.0% |
TTTGGTTAAGGTTGCTAAGT+TGG | - | chr2_4:62593485-62593504 | Msa0341180:intron | 35.0% | |
AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_4:62593843-62593862 | Msa0341180:intron | 35.0% | |
! | ACTCTCTGATGTACTTTTGT+TGG | - | chr2_4:62593879-62593898 | Msa0341180:intron | 35.0% |
! | TGATGTACTTTTGTTGGACT+TGG | - | chr2_4:62593885-62593904 | Msa0341180:intron | 35.0% |
TGTGTGACTTTCTAACTAGA+AGG | + | chr2_4:62593914-62593933 | None:intergenic | 35.0% | |
ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_4:62594026-62594045 | Msa0341180:intron | 35.0% | |
ACTCACATATATGCGTTTGT+AGG | - | chr2_4:62594055-62594074 | Msa0341180:intron | 35.0% | |
AATCAAGAGATATCGTTCGT+CGG | - | chr2_4:62594101-62594120 | Msa0341180:intron | 35.0% | |
!! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_4:62594153-62594172 | None:intergenic | 35.0% |
TTCCAAATCTAGATAGGACA+TGG | - | chr2_4:62594248-62594267 | Msa0341180:intron | 35.0% | |
! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_4:62594275-62594294 | None:intergenic | 35.0% |
GCAATCAACATTTCTCTACA+TGG | - | chr2_4:62594285-62594304 | Msa0341180:intron | 35.0% | |
TGCATGCATCAGTATATATG+TGG | + | chr2_4:62594323-62594342 | None:intergenic | 35.0% | |
! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_4:62594350-62594369 | Msa0341180:intron | 35.0% |
TAACATACCATTAAGGTTGG+AGG | - | chr2_4:62594509-62594528 | Msa0341180:intron | 35.0% | |
!! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_4:62594561-62594580 | None:intergenic | 35.0% |
GTCAAGACATCGGTAATTAT+TGG | + | chr2_4:62594594-62594613 | None:intergenic | 35.0% | |
ATTCCATTCAGTCAAGACAT+CGG | + | chr2_4:62594604-62594623 | None:intergenic | 35.0% | |
AGATTTAGATTGCATGCTGT+TGG | + | chr2_4:62594628-62594647 | None:intergenic | 35.0% | |
CGAAATGAACACACAACAAA+TGG | - | chr2_4:62594964-62594983 | Msa0341180:CDS | 35.0% | |
!! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_4:62595108-62595127 | Msa0341180:CDS | 35.0% |
GATGAAGCTGAAACTGAATT+TGG | - | chr2_4:62595145-62595164 | Msa0341180:CDS | 35.0% | |
! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_4:62595155-62595174 | Msa0341180:CDS | 35.0% |
!!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_4:62595187-62595206 | None:intergenic | 35.0% |
! | CAGAGATTTTTCCACTTATG+AGG | + | chr2_4:62595229-62595248 | None:intergenic | 35.0% |
TCCAAACCAACAAGTAACTT+TGG | - | chr2_4:62592954-62592973 | Msa0341180:CDS | 35.0% | |
! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_4:62592958-62592977 | None:intergenic | 35.0% |
TAATGAAGCAATCCATGTCA+AGG | + | chr2_4:62593011-62593030 | None:intergenic | 35.0% | |
!! | GATGATGGAACCGATTAAAT+CGG | + | chr2_4:62593070-62593089 | None:intergenic | 35.0% |
! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_4:62593117-62593136 | None:intergenic | 35.0% |
!!! | CCATGTTTGCTGTTTTAAGA+AGG | + | chr2_4:62593272-62593291 | None:intergenic | 35.0% |
CCTTCTTAAAACAGCAAACA+TGG | - | chr2_4:62593269-62593288 | Msa0341180:CDS | 35.0% | |
CTTCTTTCAGTCATACTTGT+GGG | - | chr2_4:62593379-62593398 | Msa0341180:CDS | 35.0% | |
AACAAGCTCAACATCCAAAA+GGG | + | chr2_4:62593406-62593425 | None:intergenic | 35.0% | |
TAACAAGCTCAACATCCAAA+AGG | + | chr2_4:62593407-62593426 | None:intergenic | 35.0% | |
!! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_4:62593409-62593428 | Msa0341180:CDS | 35.0% |
!! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_4:62593413-62593432 | Msa0341180:CDS | 35.0% |
!!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | chr2_4:62593434-62593453 | Msa0341180:CDS | 35.0% |
! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_4:62593456-62593475 | Msa0341180:CDS | 35.0% |
TTTGGTTAAGGTTGCTAAGT+TGG | - | chr2_4:62593485-62593504 | Msa0341180:intron | 35.0% | |
AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_4:62593843-62593862 | Msa0341180:intron | 35.0% | |
! | ACTCTCTGATGTACTTTTGT+TGG | - | chr2_4:62593879-62593898 | Msa0341180:intron | 35.0% |
! | TGATGTACTTTTGTTGGACT+TGG | - | chr2_4:62593885-62593904 | Msa0341180:intron | 35.0% |
TGTGTGACTTTCTAACTAGA+AGG | + | chr2_4:62593914-62593933 | None:intergenic | 35.0% | |
ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_4:62594026-62594045 | Msa0341180:intron | 35.0% | |
ACTCACATATATGCGTTTGT+AGG | - | chr2_4:62594055-62594074 | Msa0341180:intron | 35.0% | |
AATCAAGAGATATCGTTCGT+CGG | - | chr2_4:62594101-62594120 | Msa0341180:intron | 35.0% | |
!! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_4:62594153-62594172 | None:intergenic | 35.0% |
TTCCAAATCTAGATAGGACA+TGG | - | chr2_4:62594248-62594267 | Msa0341180:intron | 35.0% | |
! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_4:62594275-62594294 | None:intergenic | 35.0% |
GCAATCAACATTTCTCTACA+TGG | - | chr2_4:62594285-62594304 | Msa0341180:intron | 35.0% | |
TGCATGCATCAGTATATATG+TGG | + | chr2_4:62594323-62594342 | None:intergenic | 35.0% | |
! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_4:62594350-62594369 | Msa0341180:intron | 35.0% |
TAACATACCATTAAGGTTGG+AGG | - | chr2_4:62594509-62594528 | Msa0341180:intron | 35.0% | |
!! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_4:62594561-62594580 | None:intergenic | 35.0% |
GTCAAGACATCGGTAATTAT+TGG | + | chr2_4:62594594-62594613 | None:intergenic | 35.0% | |
ATTCCATTCAGTCAAGACAT+CGG | + | chr2_4:62594604-62594623 | None:intergenic | 35.0% | |
AGATTTAGATTGCATGCTGT+TGG | + | chr2_4:62594628-62594647 | None:intergenic | 35.0% | |
CGAAATGAACACACAACAAA+TGG | - | chr2_4:62594964-62594983 | Msa0341180:CDS | 35.0% | |
!! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_4:62595108-62595127 | Msa0341180:CDS | 35.0% |
GATGAAGCTGAAACTGAATT+TGG | - | chr2_4:62595145-62595164 | Msa0341180:CDS | 35.0% | |
! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_4:62595155-62595174 | Msa0341180:CDS | 35.0% |
!!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_4:62595187-62595206 | None:intergenic | 35.0% |
! | CAGAGATTTTTCCACTTATG+AGG | + | chr2_4:62595229-62595248 | None:intergenic | 35.0% |
!! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_4:62592946-62592965 | None:intergenic | 40.0% |
GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_4:62593057-62593076 | Msa0341180:CDS | 40.0% | |
TCACTCACTATGCTTCCAAA+TGG | - | chr2_4:62593088-62593107 | Msa0341180:CDS | 40.0% | |
CATGATGCTGTTACACTTTC+AGG | + | chr2_4:62593165-62593184 | None:intergenic | 40.0% | |
! | CTGAAAGTGTAACAGCATCA+TGG | - | chr2_4:62593163-62593182 | Msa0341180:CDS | 40.0% |
CAGCATCATGGATGAAGAAA+AGG | - | chr2_4:62593175-62593194 | Msa0341180:CDS | 40.0% | |
CATGGAATGGAATCTTTGTC+TGG | + | chr2_4:62593234-62593253 | None:intergenic | 40.0% | |
!!! | TTGCTGTTTTAAGAAGGCGA+AGG | + | chr2_4:62593266-62593285 | None:intergenic | 40.0% |
CCACAAGTATGACTGAAAGA+AGG | + | chr2_4:62593381-62593400 | None:intergenic | 40.0% | |
CCTTCTTTCAGTCATACTTG+TGG | - | chr2_4:62593378-62593397 | Msa0341180:CDS | 40.0% | |
!! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_4:62593467-62593486 | Msa0341180:CDS | 40.0% |
AGTCCACTGAAATTGACACT+GGG | + | chr2_4:62593716-62593735 | None:intergenic | 40.0% | |
TAGTCCACTGAAATTGACAC+TGG | + | chr2_4:62593717-62593736 | None:intergenic | 40.0% | |
TACATCAGAGAGTCTAATGC+TGG | + | chr2_4:62593872-62593891 | None:intergenic | 40.0% | |
ACCGTTAGATTGACGAAGAT+CGG | - | chr2_4:62593948-62593967 | Msa0341180:intron | 40.0% | |
TCCGATCTTCGTCAATCTAA+CGG | + | chr2_4:62593952-62593971 | None:intergenic | 40.0% | |
CATATATGTGAGTCTCATGC+CGG | + | chr2_4:62594048-62594067 | None:intergenic | 40.0% | |
ATCTCTTGATTGCGTGACTA+CGG | + | chr2_4:62594092-62594111 | None:intergenic | 40.0% | |
TTCGTCGGATTGACAAAGAT+CGG | - | chr2_4:62594116-62594135 | Msa0341180:intron | 40.0% | |
GTCCATGTCCTATCTAGATT+TGG | + | chr2_4:62594253-62594272 | None:intergenic | 40.0% | |
GCTCTACCGAGCTTAAAATA+TGG | - | chr2_4:62594552-62594571 | Msa0341180:intron | 40.0% | |
TTACCGATGTCTTGACTGAA+TGG | - | chr2_4:62594598-62594617 | Msa0341180:CDS | 40.0% | |
!! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_4:62594747-62594766 | Msa0341180:CDS | 40.0% |
TTCATGCAGCTCAAAACGAA+CGG | - | chr2_4:62594792-62594811 | Msa0341180:CDS | 40.0% | |
ACTTGAATAACAGCTCTCAC+AGG | + | chr2_4:62594821-62594840 | None:intergenic | 40.0% | |
ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_4:62594852-62594871 | None:intergenic | 40.0% | |
AACTCAACCGTTACGTTGAT+TGG | - | chr2_4:62594861-62594880 | Msa0341180:CDS | 40.0% | |
AAGCACTCCAATCAACGTAA+CGG | + | chr2_4:62594871-62594890 | None:intergenic | 40.0% | |
AACTGAAGGAAGACGTTTAC+AGG | - | chr2_4:62594996-62595015 | Msa0341180:CDS | 40.0% | |
! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_4:62595151-62595170 | Msa0341180:CDS | 40.0% |
GGACATGAAAACTAGTACTG+TGG | - | chr2_4:62595189-62595208 | Msa0341180:CDS | 40.0% | |
CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_4:62595200-62595219 | Msa0341180:CDS | 40.0% | |
AAAGTAGGACTCCTCATAAG+TGG | - | chr2_4:62595215-62595234 | Msa0341180:CDS | 40.0% | |
AAATCTCTGTCCTGATAGAG+AGG | - | chr2_4:62595240-62595259 | Msa0341180:CDS | 40.0% | |
!! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_4:62592946-62592965 | None:intergenic | 40.0% |
GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_4:62593057-62593076 | Msa0341180:CDS | 40.0% | |
TCACTCACTATGCTTCCAAA+TGG | - | chr2_4:62593088-62593107 | Msa0341180:CDS | 40.0% | |
CATGATGCTGTTACACTTTC+AGG | + | chr2_4:62593165-62593184 | None:intergenic | 40.0% | |
! | CTGAAAGTGTAACAGCATCA+TGG | - | chr2_4:62593163-62593182 | Msa0341180:CDS | 40.0% |
CAGCATCATGGATGAAGAAA+AGG | - | chr2_4:62593175-62593194 | Msa0341180:CDS | 40.0% | |
CATGGAATGGAATCTTTGTC+TGG | + | chr2_4:62593234-62593253 | None:intergenic | 40.0% | |
!!! | TTGCTGTTTTAAGAAGGCGA+AGG | + | chr2_4:62593266-62593285 | None:intergenic | 40.0% |
CCACAAGTATGACTGAAAGA+AGG | + | chr2_4:62593381-62593400 | None:intergenic | 40.0% | |
CCTTCTTTCAGTCATACTTG+TGG | - | chr2_4:62593378-62593397 | Msa0341180:CDS | 40.0% | |
!! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_4:62593467-62593486 | Msa0341180:CDS | 40.0% |
AGTCCACTGAAATTGACACT+GGG | + | chr2_4:62593716-62593735 | None:intergenic | 40.0% | |
TAGTCCACTGAAATTGACAC+TGG | + | chr2_4:62593717-62593736 | None:intergenic | 40.0% | |
TACATCAGAGAGTCTAATGC+TGG | + | chr2_4:62593872-62593891 | None:intergenic | 40.0% | |
ACCGTTAGATTGACGAAGAT+CGG | - | chr2_4:62593948-62593967 | Msa0341180:intron | 40.0% | |
TCCGATCTTCGTCAATCTAA+CGG | + | chr2_4:62593952-62593971 | None:intergenic | 40.0% | |
CATATATGTGAGTCTCATGC+CGG | + | chr2_4:62594048-62594067 | None:intergenic | 40.0% | |
ATCTCTTGATTGCGTGACTA+CGG | + | chr2_4:62594092-62594111 | None:intergenic | 40.0% | |
TTCGTCGGATTGACAAAGAT+CGG | - | chr2_4:62594116-62594135 | Msa0341180:intron | 40.0% | |
GTCCATGTCCTATCTAGATT+TGG | + | chr2_4:62594253-62594272 | None:intergenic | 40.0% | |
GCTCTACCGAGCTTAAAATA+TGG | - | chr2_4:62594552-62594571 | Msa0341180:intron | 40.0% | |
TTACCGATGTCTTGACTGAA+TGG | - | chr2_4:62594598-62594617 | Msa0341180:CDS | 40.0% | |
!! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_4:62594747-62594766 | Msa0341180:CDS | 40.0% |
TTCATGCAGCTCAAAACGAA+CGG | - | chr2_4:62594792-62594811 | Msa0341180:CDS | 40.0% | |
ACTTGAATAACAGCTCTCAC+AGG | + | chr2_4:62594821-62594840 | None:intergenic | 40.0% | |
ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_4:62594852-62594871 | None:intergenic | 40.0% | |
AACTCAACCGTTACGTTGAT+TGG | - | chr2_4:62594861-62594880 | Msa0341180:CDS | 40.0% | |
AAGCACTCCAATCAACGTAA+CGG | + | chr2_4:62594871-62594890 | None:intergenic | 40.0% | |
AACTGAAGGAAGACGTTTAC+AGG | - | chr2_4:62594996-62595015 | Msa0341180:CDS | 40.0% | |
! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_4:62595151-62595170 | Msa0341180:CDS | 40.0% |
GGACATGAAAACTAGTACTG+TGG | - | chr2_4:62595189-62595208 | Msa0341180:CDS | 40.0% | |
CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_4:62595200-62595219 | Msa0341180:CDS | 40.0% | |
AAAGTAGGACTCCTCATAAG+TGG | - | chr2_4:62595215-62595234 | Msa0341180:CDS | 40.0% | |
AAATCTCTGTCCTGATAGAG+AGG | - | chr2_4:62595240-62595259 | Msa0341180:CDS | 40.0% | |
AGATGCATGCATCCTTGACA+TGG | - | chr2_4:62592996-62593015 | Msa0341180:CDS | 45.0% | |
! | GGAAGCATAGTGAGTGATGA+TGG | + | chr2_4:62593085-62593104 | None:intergenic | 45.0% |
! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_4:62593214-62593233 | None:intergenic | 45.0% |
GGAATGGAATCTTTGTCTGG+TGG | + | chr2_4:62593231-62593250 | None:intergenic | 45.0% | |
AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_4:62593247-62593266 | None:intergenic | 45.0% | |
!!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_4:62593263-62593282 | None:intergenic | 45.0% |
! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_4:62593389-62593408 | Msa0341180:CDS | 45.0% |
!! | AACTGGTGCTGCTTTGGTTA+AGG | - | chr2_4:62593473-62593492 | Msa0341180:CDS | 45.0% |
GATTGTTACCTTGCTGAAGC+TGG | - | chr2_4:62593510-62593529 | Msa0341180:intron | 45.0% | |
TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_4:62593515-62593534 | Msa0341180:intron | 45.0% | |
!! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_4:62593555-62593574 | Msa0341180:intron | 45.0% |
TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_4:62593588-62593607 | None:intergenic | 45.0% | |
CATCATCAGTAGCTCTTGCA+TGG | + | chr2_4:62593593-62593612 | None:intergenic | 45.0% | |
CATGCAAGAGCTACTGATGA+TGG | - | chr2_4:62593591-62593610 | Msa0341180:intron | 45.0% | |
CTTCCCAGTGTCAATTTCAG+TGG | - | chr2_4:62593710-62593729 | Msa0341180:intron | 45.0% | |
TCTCTTGATTGCGTGACTAC+GGG | + | chr2_4:62594091-62594110 | None:intergenic | 45.0% | |
ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_4:62594519-62594538 | None:intergenic | 45.0% | |
!! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_4:62594789-62594808 | None:intergenic | 45.0% |
GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_4:62594885-62594904 | Msa0341180:CDS | 45.0% | |
TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_4:62594902-62594921 | Msa0341180:CDS | 45.0% | |
CAATGTCATGCAAGCACAGA+TGG | - | chr2_4:62595033-62595052 | Msa0341180:CDS | 45.0% | |
GTTTGGAAGGCAAACACCTA+TGG | - | chr2_4:62595168-62595187 | Msa0341180:CDS | 45.0% | |
ACAGTGAAAGCCTCTCTATC+AGG | + | chr2_4:62595253-62595272 | None:intergenic | 45.0% | |
AGATGCATGCATCCTTGACA+TGG | - | chr2_4:62592996-62593015 | Msa0341180:CDS | 45.0% | |
! | GGAAGCATAGTGAGTGATGA+TGG | + | chr2_4:62593085-62593104 | None:intergenic | 45.0% |
! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_4:62593214-62593233 | None:intergenic | 45.0% |
GGAATGGAATCTTTGTCTGG+TGG | + | chr2_4:62593231-62593250 | None:intergenic | 45.0% | |
AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_4:62593247-62593266 | None:intergenic | 45.0% | |
!!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_4:62593263-62593282 | None:intergenic | 45.0% |
! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_4:62593389-62593408 | Msa0341180:CDS | 45.0% |
!! | AACTGGTGCTGCTTTGGTTA+AGG | - | chr2_4:62593473-62593492 | Msa0341180:CDS | 45.0% |
GATTGTTACCTTGCTGAAGC+TGG | - | chr2_4:62593510-62593529 | Msa0341180:intron | 45.0% | |
TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_4:62593515-62593534 | Msa0341180:intron | 45.0% | |
!! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_4:62593555-62593574 | Msa0341180:intron | 45.0% |
TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_4:62593588-62593607 | None:intergenic | 45.0% | |
CATCATCAGTAGCTCTTGCA+TGG | + | chr2_4:62593593-62593612 | None:intergenic | 45.0% | |
CATGCAAGAGCTACTGATGA+TGG | - | chr2_4:62593591-62593610 | Msa0341180:intron | 45.0% | |
CTTCCCAGTGTCAATTTCAG+TGG | - | chr2_4:62593710-62593729 | Msa0341180:intron | 45.0% | |
TCTCTTGATTGCGTGACTAC+GGG | + | chr2_4:62594091-62594110 | None:intergenic | 45.0% | |
ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_4:62594519-62594538 | None:intergenic | 45.0% | |
!! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_4:62594789-62594808 | None:intergenic | 45.0% |
GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_4:62594885-62594904 | Msa0341180:CDS | 45.0% | |
TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_4:62594902-62594921 | Msa0341180:CDS | 45.0% | |
CAATGTCATGCAAGCACAGA+TGG | - | chr2_4:62595033-62595052 | Msa0341180:CDS | 45.0% | |
GTTTGGAAGGCAAACACCTA+TGG | - | chr2_4:62595168-62595187 | Msa0341180:CDS | 45.0% | |
ACAGTGAAAGCCTCTCTATC+AGG | + | chr2_4:62595253-62595272 | None:intergenic | 45.0% | |
TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_4:62593106-62593125 | None:intergenic | 50.0% | |
CATCCAAACCAGCTTCAGCA+AGG | + | chr2_4:62593521-62593540 | None:intergenic | 50.0% | |
CTTTCTTGCTTCGACACGCT+TGG | + | chr2_4:62594719-62594738 | None:intergenic | 50.0% | |
AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_4:62594896-62594915 | Msa0341180:CDS | 50.0% | |
AACACACCACCGTATCCACT+TGG | + | chr2_4:62594914-62594933 | None:intergenic | 50.0% | |
AAGTGGATACGGTGGTGTGT+TGG | - | chr2_4:62594913-62594932 | Msa0341180:CDS | 50.0% | |
TAGAAAGACACCGTGCCTGT+GGG | + | chr2_4:62594940-62594959 | None:intergenic | 50.0% | |
TTAGAAAGACACCGTGCCTG+TGG | + | chr2_4:62594941-62594960 | None:intergenic | 50.0% | |
GCAAGCACAGATGGACAAGA+TGG | - | chr2_4:62595042-62595061 | Msa0341180:CDS | 50.0% | |
TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_4:62593106-62593125 | None:intergenic | 50.0% | |
CATCCAAACCAGCTTCAGCA+AGG | + | chr2_4:62593521-62593540 | None:intergenic | 50.0% | |
CTTTCTTGCTTCGACACGCT+TGG | + | chr2_4:62594719-62594738 | None:intergenic | 50.0% | |
AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_4:62594896-62594915 | Msa0341180:CDS | 50.0% | |
AACACACCACCGTATCCACT+TGG | + | chr2_4:62594914-62594933 | None:intergenic | 50.0% | |
AAGTGGATACGGTGGTGTGT+TGG | - | chr2_4:62594913-62594932 | Msa0341180:CDS | 50.0% | |
TAGAAAGACACCGTGCCTGT+GGG | + | chr2_4:62594940-62594959 | None:intergenic | 50.0% | |
TTAGAAAGACACCGTGCCTG+TGG | + | chr2_4:62594941-62594960 | None:intergenic | 50.0% | |
GCAAGCACAGATGGACAAGA+TGG | - | chr2_4:62595042-62595061 | Msa0341180:CDS | 50.0% | |
AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_4:62593252-62593271 | None:intergenic | 55.0% | |
GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_4:62594782-62594801 | None:intergenic | 55.0% | |
AGGAGTCCAAGTGGATACGG+TGG | - | chr2_4:62594905-62594924 | Msa0341180:CDS | 55.0% | |
AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_4:62593252-62593271 | None:intergenic | 55.0% | |
GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_4:62594782-62594801 | None:intergenic | 55.0% | |
AGGAGTCCAAGTGGATACGG+TGG | - | chr2_4:62594905-62594924 | Msa0341180:CDS | 55.0% | |
GTGTGTTGGACCCACAGGCA+CGG | - | chr2_4:62594927-62594946 | Msa0341180:CDS | 60.0% | |
GTGTGTTGGACCCACAGGCA+CGG | - | chr2_4:62594927-62594946 | Msa0341180:CDS | 60.0% | |
CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_4:62594922-62594941 | Msa0341180:CDS | 65.0% | |
CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_4:62594922-62594941 | Msa0341180:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 62592919 | 62595291 | 62592919 | ID=Msa0341180;Name=Msa0341180 |
chr2_4 | mRNA | 62592919 | 62595291 | 62592919 | ID=Msa0341180-mRNA-1;Parent=Msa0341180;Name=Msa0341180-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.66|1|1|3|0|436 |
chr2_4 | exon | 62594598 | 62595291 | 62594598 | ID=Msa0341180-mRNA-1:exon:19964;Parent=Msa0341180-mRNA-1 |
chr2_4 | exon | 62593755 | 62593789 | 62593755 | ID=Msa0341180-mRNA-1:exon:19963;Parent=Msa0341180-mRNA-1 |
chr2_4 | exon | 62592919 | 62593500 | 62592919 | ID=Msa0341180-mRNA-1:exon:19962;Parent=Msa0341180-mRNA-1 |
chr2_4 | CDS | 62594598 | 62595291 | 62594598 | ID=Msa0341180-mRNA-1:cds;Parent=Msa0341180-mRNA-1 |
chr2_4 | CDS | 62593755 | 62593789 | 62593755 | ID=Msa0341180-mRNA-1:cds;Parent=Msa0341180-mRNA-1 |
chr2_4 | CDS | 62592919 | 62593500 | 62592919 | ID=Msa0341180-mRNA-1:cds;Parent=Msa0341180-mRNA-1 |
Gene Sequence |
Protein sequence |