Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397450 | XP_003597825.1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397450 | sp|Q5KS50|NPH3_ORYSJ | 35.402 | 435 | 194 | 8 | 10 | 358 | 256 | 689 | 8.83e-73 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397450 | G7IMG1 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0225870 | Msa1397450 | 0.965232 | 2.444138e-124 | -8.615850e-47 |
| Msa0260460 | Msa1397450 | 0.918488 | 1.465213e-86 | -8.615850e-47 |
| Msa0341180 | Msa1397450 | 0.892776 | 1.161708e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397450 | MtrunA17_Chr2g0332281 | 97.872 | 423 | 9 | 0 | 1 | 423 | 1 | 423 | 0.0 | 863 |
| Msa1397450 | MtrunA17_Chr4g0003891 | 71.891 | 402 | 96 | 6 | 23 | 409 | 45 | 444 | 0.0 | 570 |
| Msa1397450 | MtrunA17_Chr2g0279481 | 34.519 | 478 | 238 | 8 | 10 | 423 | 219 | 685 | 9.70e-82 | 265 |
| Msa1397450 | MtrunA17_Chr4g0050021 | 37.701 | 435 | 211 | 10 | 7 | 384 | 215 | 646 | 3.60e-81 | 263 |
| Msa1397450 | MtrunA17_Chr4g0010091 | 38.843 | 363 | 195 | 6 | 25 | 364 | 212 | 570 | 5.56e-68 | 227 |
| Msa1397450 | MtrunA17_Chr5g0412591 | 39.677 | 310 | 142 | 5 | 26 | 293 | 183 | 489 | 1.09e-64 | 218 |
| Msa1397450 | MtrunA17_Chr2g0285511 | 33.763 | 388 | 229 | 6 | 25 | 392 | 215 | 594 | 2.35e-64 | 217 |
| Msa1397450 | MtrunA17_Chr8g0382231 | 37.919 | 298 | 156 | 5 | 25 | 294 | 216 | 512 | 2.03e-63 | 215 |
| Msa1397450 | MtrunA17_Chr7g0245201 | 37.995 | 379 | 209 | 9 | 25 | 384 | 237 | 608 | 2.30e-63 | 215 |
| Msa1397450 | MtrunA17_Chr2g0303541 | 35.533 | 394 | 204 | 9 | 25 | 378 | 216 | 599 | 1.87e-62 | 213 |
| Msa1397450 | MtrunA17_Chr7g0268781 | 34.499 | 429 | 220 | 12 | 30 | 420 | 219 | 624 | 1.89e-61 | 209 |
| Msa1397450 | MtrunA17_Chr1g0195911 | 33.738 | 412 | 219 | 12 | 30 | 399 | 216 | 615 | 2.04e-59 | 204 |
| Msa1397450 | MtrunA17_Chr1g0207461 | 35.294 | 425 | 208 | 14 | 26 | 407 | 215 | 615 | 3.55e-59 | 203 |
| Msa1397450 | MtrunA17_Chr1g0181181 | 33.151 | 365 | 195 | 9 | 25 | 356 | 191 | 539 | 6.50e-57 | 196 |
| Msa1397450 | MtrunA17_Chr1g0199631 | 32.105 | 380 | 218 | 7 | 25 | 380 | 177 | 540 | 1.74e-56 | 195 |
| Msa1397450 | MtrunA17_Chr1g0150191 | 40.559 | 286 | 138 | 7 | 26 | 292 | 215 | 487 | 1.49e-55 | 193 |
| Msa1397450 | MtrunA17_Chr5g0401341 | 40.989 | 283 | 139 | 5 | 26 | 293 | 214 | 483 | 3.43e-55 | 193 |
| Msa1397450 | MtrunA17_Chr8g0374011 | 39.527 | 296 | 153 | 4 | 25 | 298 | 228 | 519 | 5.42e-55 | 193 |
| Msa1397450 | MtrunA17_Chr5g0401451 | 36.036 | 333 | 186 | 6 | 26 | 340 | 221 | 544 | 3.36e-54 | 190 |
| Msa1397450 | MtrunA17_Chr4g0053841 | 36.193 | 373 | 197 | 9 | 26 | 368 | 197 | 558 | 3.20e-53 | 187 |
| Msa1397450 | MtrunA17_Chr4g0076521 | 36.364 | 297 | 176 | 4 | 6 | 293 | 183 | 475 | 8.88e-51 | 180 |
| Msa1397450 | MtrunA17_Chr3g0108331 | 31.566 | 396 | 231 | 9 | 26 | 404 | 185 | 557 | 2.67e-50 | 178 |
| Msa1397450 | MtrunA17_Chr2g0320691 | 34.965 | 286 | 169 | 3 | 25 | 294 | 213 | 497 | 2.38e-48 | 174 |
| Msa1397450 | MtrunA17_Chr1g0191711 | 28.198 | 344 | 215 | 7 | 13 | 349 | 210 | 528 | 3.02e-46 | 167 |
| Msa1397450 | MtrunA17_Chr8g0367891 | 34.983 | 303 | 143 | 6 | 26 | 293 | 201 | 484 | 1.75e-45 | 166 |
| Msa1397450 | MtrunA17_Chr2g0290741 | 35.971 | 278 | 153 | 5 | 26 | 293 | 203 | 465 | 6.76e-40 | 150 |
| Msa1397450 | MtrunA17_Chr5g0432861 | 30.070 | 286 | 183 | 2 | 26 | 294 | 186 | 471 | 1.20e-39 | 149 |
| Msa1397450 | MtrunA17_Chr4g0023801 | 33.333 | 291 | 161 | 6 | 106 | 372 | 257 | 538 | 4.59e-35 | 136 |
| Msa1397450 | MtrunA17_Chr4g0037661 | 36.082 | 194 | 122 | 1 | 101 | 294 | 276 | 467 | 1.92e-31 | 125 |
| Msa1397450 | MtrunA17_Chr1g0163311 | 33.508 | 191 | 122 | 2 | 101 | 291 | 272 | 457 | 6.66e-29 | 118 |
| Msa1397450 | MtrunA17_Chr2g0280541 | 27.799 | 259 | 170 | 6 | 37 | 294 | 131 | 373 | 4.82e-19 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397450 | AT3G15570.1 | 59.121 | 455 | 151 | 8 | 1 | 423 | 1 | 452 | 0.0 | 514 |
| Msa1397450 | AT1G52770.1 | 58.409 | 440 | 154 | 9 | 12 | 423 | 16 | 454 | 2.99e-172 | 490 |
| Msa1397450 | AT5G03250.2 | 36.605 | 377 | 196 | 9 | 25 | 377 | 108 | 465 | 2.97e-66 | 219 |
| Msa1397450 | AT5G03250.1 | 36.605 | 377 | 196 | 9 | 25 | 377 | 220 | 577 | 3.01e-65 | 219 |
| Msa1397450 | AT5G64330.1 | 38.235 | 340 | 149 | 6 | 92 | 374 | 373 | 708 | 3.14e-65 | 222 |
| Msa1397450 | AT5G64330.3 | 45.957 | 235 | 96 | 2 | 92 | 295 | 314 | 548 | 4.84e-61 | 208 |
| Msa1397450 | AT5G13600.1 | 34.903 | 361 | 208 | 7 | 25 | 368 | 211 | 561 | 1.09e-60 | 207 |
| Msa1397450 | AT1G30440.1 | 34.121 | 381 | 208 | 7 | 25 | 366 | 217 | 593 | 1.56e-60 | 208 |
| Msa1397450 | AT5G64330.2 | 45.957 | 235 | 96 | 2 | 92 | 295 | 373 | 607 | 1.62e-60 | 208 |
| Msa1397450 | AT3G08660.3 | 33.989 | 356 | 188 | 6 | 26 | 357 | 140 | 472 | 1.27e-58 | 200 |
| Msa1397450 | AT3G08660.1 | 34.270 | 356 | 187 | 6 | 26 | 357 | 200 | 532 | 4.01e-58 | 200 |
| Msa1397450 | AT5G48800.1 | 35.696 | 381 | 196 | 8 | 25 | 376 | 222 | 582 | 1.76e-57 | 199 |
| Msa1397450 | AT5G66560.3 | 41.275 | 298 | 156 | 5 | 25 | 311 | 228 | 517 | 5.23e-57 | 198 |
| Msa1397450 | AT5G66560.4 | 41.275 | 298 | 156 | 5 | 25 | 311 | 218 | 507 | 5.38e-57 | 198 |
| Msa1397450 | AT1G03010.2 | 37.222 | 360 | 170 | 11 | 29 | 340 | 185 | 536 | 1.00e-56 | 197 |
| Msa1397450 | AT5G66560.1 | 41.275 | 298 | 156 | 5 | 25 | 311 | 257 | 546 | 1.10e-56 | 198 |
| Msa1397450 | AT1G03010.1 | 37.222 | 360 | 170 | 11 | 29 | 340 | 212 | 563 | 2.26e-56 | 196 |
| Msa1397450 | AT5G67385.4 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa1397450 | AT5G67385.5 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa1397450 | AT5G67385.2 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa1397450 | AT5G67385.3 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 2.33e-56 | 195 |
| Msa1397450 | AT2G47860.5 | 34.359 | 390 | 195 | 9 | 30 | 374 | 96 | 469 | 2.53e-56 | 194 |
| Msa1397450 | AT2G47860.2 | 34.359 | 390 | 195 | 9 | 30 | 374 | 96 | 469 | 2.53e-56 | 194 |
| Msa1397450 | AT1G03010.3 | 37.326 | 359 | 169 | 11 | 30 | 340 | 212 | 562 | 2.62e-56 | 196 |
| Msa1397450 | AT5G67385.1 | 39.068 | 279 | 152 | 5 | 26 | 294 | 205 | 475 | 5.12e-56 | 195 |
| Msa1397450 | AT2G47860.1 | 34.359 | 390 | 195 | 9 | 30 | 374 | 214 | 587 | 2.05e-55 | 194 |
| Msa1397450 | AT2G30520.2 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 2.21e-55 | 192 |
| Msa1397450 | AT2G30520.3 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 2.21e-55 | 192 |
| Msa1397450 | AT2G47860.3 | 34.359 | 390 | 195 | 9 | 30 | 374 | 237 | 610 | 2.78e-55 | 194 |
| Msa1397450 | AT2G30520.1 | 35.905 | 337 | 205 | 3 | 26 | 351 | 191 | 527 | 3.99e-55 | 192 |
| Msa1397450 | AT3G26490.1 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa1397450 | AT3G26490.3 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa1397450 | AT3G26490.4 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.36e-53 | 188 |
| Msa1397450 | AT4G31820.2 | 38.869 | 283 | 134 | 6 | 26 | 295 | 161 | 417 | 4.48e-53 | 185 |
| Msa1397450 | AT5G10250.2 | 32.533 | 375 | 219 | 7 | 23 | 370 | 212 | 579 | 4.60e-53 | 187 |
| Msa1397450 | AT4G31820.1 | 38.869 | 283 | 134 | 6 | 26 | 295 | 214 | 470 | 1.49e-52 | 185 |
| Msa1397450 | AT5G10250.1 | 32.329 | 365 | 218 | 7 | 23 | 370 | 212 | 564 | 1.05e-51 | 183 |
| Msa1397450 | AT2G14820.2 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.62e-50 | 181 |
| Msa1397450 | AT2G14820.1 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.62e-50 | 181 |
| Msa1397450 | AT1G67900.5 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT1G67900.1 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT1G67900.3 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT1G67900.6 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT1G67900.2 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT1G67900.4 | 36.601 | 306 | 156 | 3 | 26 | 293 | 204 | 509 | 8.10e-50 | 179 |
| Msa1397450 | AT3G08570.1 | 31.944 | 360 | 211 | 7 | 25 | 359 | 213 | 563 | 1.38e-49 | 177 |
| Msa1397450 | AT3G44820.1 | 31.099 | 373 | 216 | 7 | 25 | 359 | 214 | 583 | 6.77e-48 | 174 |
| Msa1397450 | AT4G37590.1 | 37.868 | 272 | 145 | 5 | 26 | 295 | 218 | 467 | 1.62e-47 | 171 |
| Msa1397450 | AT5G47800.3 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa1397450 | AT5G47800.1 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa1397450 | AT5G47800.4 | 34.459 | 296 | 180 | 4 | 6 | 291 | 183 | 474 | 8.61e-47 | 169 |
| Msa1397450 | AT3G50840.2 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 3.56e-46 | 167 |
| Msa1397450 | AT3G50840.3 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 3.56e-46 | 167 |
| Msa1397450 | AT5G47800.2 | 34.228 | 298 | 182 | 4 | 4 | 291 | 294 | 587 | 3.69e-46 | 169 |
| Msa1397450 | AT3G50840.1 | 33.333 | 357 | 226 | 5 | 25 | 381 | 197 | 541 | 6.97e-46 | 167 |
| Msa1397450 | AT2G23050.2 | 36.531 | 271 | 142 | 6 | 26 | 295 | 95 | 336 | 8.76e-45 | 159 |
| Msa1397450 | AT5G67440.2 | 36.823 | 277 | 157 | 5 | 26 | 293 | 172 | 439 | 1.24e-44 | 163 |
| Msa1397450 | AT5G67440.3 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 2.98e-44 | 162 |
| Msa1397450 | AT5G67440.1 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 2.98e-44 | 162 |
| Msa1397450 | AT2G23050.1 | 36.531 | 271 | 142 | 6 | 26 | 295 | 211 | 452 | 4.49e-44 | 160 |
| Msa1397450 | AT3G49970.1 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 4.21e-38 | 144 |
| Msa1397450 | AT3G49970.2 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 4.21e-38 | 144 |
| Msa1397450 | AT2G47860.6 | 36.992 | 246 | 106 | 6 | 30 | 242 | 237 | 466 | 8.33e-34 | 132 |
| Msa1397450 | AT2G47860.4 | 36.992 | 246 | 106 | 6 | 30 | 242 | 214 | 443 | 1.08e-33 | 131 |
| Msa1397450 | AT5G66560.2 | 37.991 | 229 | 125 | 4 | 25 | 242 | 257 | 479 | 4.28e-33 | 130 |
| Msa1397450 | AT3G26490.2 | 33.858 | 254 | 114 | 5 | 26 | 243 | 222 | 457 | 4.42e-33 | 130 |
| Msa1397450 | AT3G08660.2 | 32.365 | 241 | 130 | 4 | 26 | 250 | 200 | 423 | 7.20e-31 | 123 |
| Msa1397450 | AT3G19850.1 | 34.896 | 192 | 124 | 1 | 101 | 291 | 272 | 463 | 3.40e-29 | 120 |
| Msa1397450 | AT3G03510.1 | 33.468 | 248 | 143 | 6 | 51 | 294 | 133 | 362 | 8.11e-29 | 117 |
| Msa1397450 | AT3G22104.4 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa1397450 | AT3G22104.2 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa1397450 | AT3G22104.3 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.59e-27 | 113 |
| Msa1397450 | AT3G22104.1 | 35.567 | 194 | 119 | 3 | 86 | 278 | 232 | 420 | 3.99e-27 | 113 |
| Msa1397450 | AT1G50280.2 | 32.275 | 189 | 126 | 1 | 101 | 287 | 239 | 427 | 3.36e-25 | 107 |
| Msa1397450 | AT1G50280.1 | 32.275 | 189 | 126 | 1 | 101 | 287 | 272 | 460 | 3.49e-25 | 108 |
| Msa1397450 | AT5G17580.2 | 30.233 | 258 | 158 | 4 | 43 | 294 | 217 | 458 | 2.81e-23 | 102 |
| Msa1397450 | AT5G17580.1 | 30.233 | 258 | 158 | 4 | 43 | 294 | 202 | 443 | 3.39e-23 | 102 |
| Msa1397450 | AT5G48130.1 | 32.374 | 139 | 92 | 2 | 191 | 328 | 367 | 504 | 1.57e-18 | 88.6 |
Find 80 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGTTTGGACTTGTTTC+TGG | 0.094629 | tig0022151:+102811 | None:intergenic |
| CATGATGTTGTTACACTTTC+AGG | 0.101878 | tig0022151:+102592 | None:intergenic |
| GATGAAGCTGAAACTGAATT+TGG | 0.156976 | tig0022151:-100608 | Msa1397450:CDS |
| TCTCAGTTTGTTGCACTTGC+TGG | 0.262022 | tig0022151:-102199 | Msa1397450:CDS |
| TCATACTTGTGGGACCCTTT+TGG | 0.268326 | tig0022151:-102365 | Msa1397450:CDS |
| AACTCAACCGTTACGTTGAT+TGG | 0.275986 | tig0022151:-100892 | Msa1397450:CDS |
| AACTGAAGGAAGACGTTTAC+AGG | 0.316073 | tig0022151:-100757 | Msa1397450:CDS |
| TTACCTTGCTGAAGCTGGTT+TGG | 0.320602 | tig0022151:-102239 | Msa1397450:CDS |
| TCCAAAGTTACTTGTTGGTT+TGG | 0.335510 | tig0022151:+102799 | None:intergenic |
| CTTTCAAACATCAAACAAAA+AGG | 0.338570 | tig0022151:-102718 | Msa1397450:CDS |
| TGGATGTTGAGCTTGTTATT+AGG | 0.354204 | tig0022151:-102345 | Msa1397450:CDS |
| CTTTCTTGCTTCGACACGCT+TGG | 0.365749 | tig0022151:+101037 | None:intergenic |
| ATGAAGCTGAAACTGAATTT+GGG | 0.381070 | tig0022151:-100607 | Msa1397450:CDS |
| AGAAGAAAAGTTTCTTCAAA+TGG | 0.382710 | tig0022151:-100682 | Msa1397450:CDS |
| TAACTTTGGAATATTGTTGC+CGG | 0.401723 | tig0022151:-102786 | Msa1397450:CDS |
| AATTTGAATTTGAAGTTTCA+AGG | 0.404146 | tig0022151:+102635 | None:intergenic |
| AATATTCCAAAGTTACTTGT+TGG | 0.406337 | tig0022151:+102794 | None:intergenic |
| AGTTAAAACTGGTGCTGCTT+TGG | 0.406920 | tig0022151:-102287 | Msa1397450:CDS |
| CGAAATGAACACACAACAAA+TGG | 0.410203 | tig0022151:-100789 | Msa1397450:CDS |
| GGTGTTCGTTCCGATTTAAT+CGG | 0.410626 | tig0022151:-102697 | Msa1397450:CDS |
| GCTGAAACTGAATTTGGGTT+TGG | 0.417674 | tig0022151:-100602 | Msa1397450:CDS |
| TTTGGTTAAAGTTGCTAAGT+TGG | 0.421971 | tig0022151:-102269 | Msa1397450:CDS |
| TTGTTATTAGGTTGGTTAAG+AGG | 0.429280 | tig0022151:-102333 | Msa1397450:CDS |
| GAATTTGAAGTTTCAAGGTC+AGG | 0.429853 | tig0022151:+102640 | None:intergenic |
| CATGGAATGGAATCTTTGTC+TGG | 0.430911 | tig0022151:+102523 | None:intergenic |
| ACGGTTGAGTTTCGTTTGTT+CGG | 0.438226 | tig0022151:+100904 | None:intergenic |
| GATCATGATGGAGTTAAAAC+TGG | 0.446409 | tig0022151:-102298 | Msa1397450:CDS |
| TCCAAACCAACAAGTAACTT+TGG | 0.448402 | tig0022151:-102800 | Msa1397450:CDS |
| CAACATCATGGATGAAGAAA+AGG | 0.449234 | tig0022151:-102579 | Msa1397450:CDS |
| GCTGCATGAAGTGAGGCTTC+TGG | 0.449394 | tig0022151:+100974 | None:intergenic |
| ATCTTGAGAATCGAATTTCA+TGG | 0.451747 | tig0022151:-102435 | Msa1397450:CDS |
| GATTGTTACCTTGCTGAAGC+TGG | 0.451910 | tig0022151:-102244 | Msa1397450:CDS |
| CTTCTTTCAGTCATACTTGT+GGG | 0.454989 | tig0022151:-102375 | Msa1397450:CDS |
| TCAGTAGCTCTTGCATGGTT+AGG | 0.455773 | tig0022151:+102169 | None:intergenic |
| TTCAAGGTCAGGGAGCCATT+TGG | 0.459356 | tig0022151:+102651 | None:intergenic |
| GATGATGGAACCGATTAAAT+CGG | 0.462106 | tig0022151:+102687 | None:intergenic |
| TAACAAGCTCAACATCCAAA+AGG | 0.463547 | tig0022151:+102350 | None:intergenic |
| TGTTGAGCTTGTTATTAGGT+TGG | 0.469392 | tig0022151:-102341 | Msa1397450:CDS |
| GGATGCATGCATCTTCGAAC+CGG | 0.476249 | tig0022151:+102767 | None:intergenic |
| CCTTCTTAAAACAGCTAACA+TGG | 0.480139 | tig0022151:-102485 | Msa1397450:CDS |
| GTGCTTCTTTCAGTAGCTTG+AGG | 0.496152 | tig0022151:-100868 | Msa1397450:CDS |
| CAATGTCATGCAAGCACAGA+TGG | 0.500225 | tig0022151:-100720 | Msa1397450:CDS |
| GTTTGGAAGGCAAACACCTA+TGG | 0.502755 | tig0022151:-100585 | Msa1397450:CDS |
| CTAGTACTGTGGTCAAAAGT+AGG | 0.505830 | tig0022151:-100553 | Msa1397450:CDS |
| AACAAGCTCAACATCCAAAA+GGG | 0.506792 | tig0022151:+102351 | None:intergenic |
| AATTTGAAGTTTCAAGGTCA+GGG | 0.510124 | tig0022151:+102641 | None:intergenic |
| CATGCAAGAGCTACTGATGA+TGG | 0.510855 | tig0022151:-102163 | Msa1397450:CDS |
| AAACTGAATTTGGGTTTGGA+AGG | 0.516582 | tig0022151:-100598 | Msa1397450:CDS |
| TTGAGGAGTCCAAGTGGATA+CGG | 0.521600 | tig0022151:-100851 | Msa1397450:CDS |
| AACACACCACCGTATCCACT+TGG | 0.522164 | tig0022151:+100842 | None:intergenic |
| TGGTGGAAGAACACTGACTA+AGG | 0.524858 | tig0022151:+102543 | None:intergenic |
| AAAGTAGGACTCCTCATAAG+TGG | 0.528795 | tig0022151:-100538 | Msa1397450:CDS |
| TACTTTAAGATAAGTGTCAA+TGG | 0.534706 | tig0022151:+102129 | None:intergenic |
| GGAAGCATAGTGAGTGATGA+TGG | 0.534975 | tig0022151:+102672 | None:intergenic |
| AAGGAGGAAGTTGCATGGAA+TGG | 0.540539 | tig0022151:+102510 | None:intergenic |
| CTGAAAGTGTAACAACATCA+TGG | 0.545813 | tig0022151:-102591 | Msa1397450:CDS |
| CGGTGGTGTGTTGGACCCAC+AGG | 0.552148 | tig0022151:-100831 | Msa1397450:CDS |
| TATTAAAAGCATCGGAGAGA+CGG | 0.553022 | tig0022151:-100645 | Msa1397450:CDS |
| AGATGCATGCATCCTTGACA+TGG | 0.556346 | tig0022151:-102758 | Msa1397450:CDS |
| TGTGTAGGTTGATTGATAGC+AGG | 0.557107 | tig0022151:-101006 | Msa1397450:CDS |
| TCACTCACTATGCTTCCAAA+TGG | 0.563233 | tig0022151:-102666 | Msa1397450:CDS |
| GCAAGCACAGATGGACAAGA+TGG | 0.567785 | tig0022151:-100711 | Msa1397450:CDS |
| TGAAATTCGATTCTCAAGAT+CGG | 0.569341 | tig0022151:+102438 | None:intergenic |
| CCTTCTTTCAGTCATACTTG+TGG | 0.572660 | tig0022151:-102376 | Msa1397450:CDS |
| CATCATCAGTAGCTCTTGCA+TGG | 0.574138 | tig0022151:+102164 | None:intergenic |
| TTAGAAAGACACCGTGCCTG+TGG | 0.583694 | tig0022151:+100815 | None:intergenic |
| GGACATGAAAACTAGTACTG+TGG | 0.589920 | tig0022151:-100564 | Msa1397450:CDS |
| TAATGAAGCAATCCATGTCA+AGG | 0.592917 | tig0022151:+102746 | None:intergenic |
| ACTTGAATAACAGCTCTCAC+AGG | 0.608705 | tig0022151:+100935 | None:intergenic |
| CCACAAGTATGACTGAAAGA+AGG | 0.608970 | tig0022151:+102376 | None:intergenic |
| AAGTGGATACGGTGGTGTGT+TGG | 0.620100 | tig0022151:-100840 | Msa1397450:CDS |
| TAGAAAGACACCGTGCCTGT+GGG | 0.630868 | tig0022151:+100816 | None:intergenic |
| TTCATGCAGCTCAAAACGAA+CGG | 0.639540 | tig0022151:-100961 | Msa1397450:CDS |
| AGGCGAAGGAGGAAGTTGCA+TGG | 0.639865 | tig0022151:+102505 | None:intergenic |
| GGAATGGAATCTTTGTCTGG+TGG | 0.645080 | tig0022151:+102526 | None:intergenic |
| CATCCAAACCAGCTTCAGCA+AGG | 0.652544 | tig0022151:+102236 | None:intergenic |
| GTGTGTTGGACCCACAGGCA+CGG | 0.663649 | tig0022151:-100826 | Msa1397450:CDS |
| AAGCACTCCAATCAACGTAA+CGG | 0.670586 | tig0022151:+100885 | None:intergenic |
| AGTAGCTTGAGGAGTCCAAG+TGG | 0.684181 | tig0022151:-100857 | Msa1397450:CDS |
| AGGAGTCCAAGTGGATACGG+TGG | 0.701403 | tig0022151:-100848 | Msa1397450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATATACATATCTATA+AGG | + | tig0022151:102049-102068 | None:intergenic | 10.0% |
| !! | AATAAATATACATATCTATA+AGG | + | tig0022151:102049-102068 | None:intergenic | 10.0% |
| !!! | TACTTATTTATTTTTGCAAT+AGG | - | tig0022151:102290-102309 | Msa1397450:CDS | 15.0% |
| !!! | TACTTATTTATTTTTGCAAT+AGG | - | tig0022151:102290-102309 | Msa1397450:CDS | 15.0% |
| !!! | TTTTTGTTTGATGTTTGAAA+GGG | + | tig0022151:100638-100657 | None:intergenic | 20.0% |
| !!! | AATTTGAATTTGAAGTTTCA+AGG | + | tig0022151:100723-100742 | None:intergenic | 20.0% |
| !! | AGAAAGAAATAAGTATTAAG+AGG | - | tig0022151:101397-101416 | Msa1397450:intron | 20.0% |
| !!! | TATACTTGTAAAGTCAATTT+TGG | + | tig0022151:101765-101784 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTTTTTCATCTAA+AGG | - | tig0022151:101798-101817 | Msa1397450:intron | 20.0% |
| !! | AATATACATATCTATAAGGA+AGG | + | tig0022151:102045-102064 | None:intergenic | 20.0% |
| !!! | AAGAAAATTAATGTGCTTTT+TGG | + | tig0022151:102080-102099 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGATGTTTGAAA+GGG | + | tig0022151:100638-100657 | None:intergenic | 20.0% |
| !!! | AATTTGAATTTGAAGTTTCA+AGG | + | tig0022151:100723-100742 | None:intergenic | 20.0% |
| !! | AGAAAGAAATAAGTATTAAG+AGG | - | tig0022151:101397-101416 | Msa1397450:intron | 20.0% |
| !!! | TATACTTGTAAAGTCAATTT+TGG | + | tig0022151:101765-101784 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTTTTTCATCTAA+AGG | - | tig0022151:101798-101817 | Msa1397450:intron | 20.0% |
| !! | AATATACATATCTATAAGGA+AGG | + | tig0022151:102045-102064 | None:intergenic | 20.0% |
| !!! | AAGAAAATTAATGTGCTTTT+TGG | + | tig0022151:102080-102099 | None:intergenic | 20.0% |
| ! | AATATTCCAAAGTTACTTGT+TGG | + | tig0022151:100564-100583 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTGATGTTTGAA+AGG | + | tig0022151:100639-100658 | None:intergenic | 25.0% |
| ! | CTTTCAAACATCAAACAAAA+AGG | - | tig0022151:100637-100656 | Msa1397450:CDS | 25.0% |
| !!! | TACTTTAAGATAAGTGTCAA+TGG | + | tig0022151:101229-101248 | None:intergenic | 25.0% |
| !! | TAATTCTTTCTAAAGATCTC+AGG | - | tig0022151:101282-101301 | Msa1397450:intron | 25.0% |
| ! | AAGAAATAAGTATTAAGAGG+AGG | - | tig0022151:101400-101419 | Msa1397450:intron | 25.0% |
| !!! | TATCTAGATTTGGAATTTTG+TGG | + | tig0022151:101845-101864 | None:intergenic | 25.0% |
| ! | ACAAAATTCCAAATCTAGAT+AGG | - | tig0022151:101844-101863 | Msa1397450:intron | 25.0% |
| ! | ATTCAAGTAACATACCATTA+AGG | - | tig0022151:102104-102123 | Msa1397450:intron | 25.0% |
| ! | AATGGAGATAAAAAAACTGA+AGG | - | tig0022151:102584-102603 | Msa1397450:CDS | 25.0% |
| ! | AGAAGAAAAGTTTCTTCAAA+TGG | - | tig0022151:102673-102692 | Msa1397450:CDS | 25.0% |
| !!! | CTTGCTTTTATTAAAAGCAT+CGG | - | tig0022151:102702-102721 | Msa1397450:CDS | 25.0% |
| ! | AATATTCCAAAGTTACTTGT+TGG | + | tig0022151:100564-100583 | None:intergenic | 25.0% |
| !!! | CTTTTTGTTTGATGTTTGAA+AGG | + | tig0022151:100639-100658 | None:intergenic | 25.0% |
| ! | CTTTCAAACATCAAACAAAA+AGG | - | tig0022151:100637-100656 | Msa1397450:CDS | 25.0% |
| !!! | TACTTTAAGATAAGTGTCAA+TGG | + | tig0022151:101229-101248 | None:intergenic | 25.0% |
| !! | TAATTCTTTCTAAAGATCTC+AGG | - | tig0022151:101282-101301 | Msa1397450:intron | 25.0% |
| ! | AAGAAATAAGTATTAAGAGG+AGG | - | tig0022151:101400-101419 | Msa1397450:intron | 25.0% |
| !!! | TATCTAGATTTGGAATTTTG+TGG | + | tig0022151:101845-101864 | None:intergenic | 25.0% |
| ! | ACAAAATTCCAAATCTAGAT+AGG | - | tig0022151:101844-101863 | Msa1397450:intron | 25.0% |
| ! | ATTCAAGTAACATACCATTA+AGG | - | tig0022151:102104-102123 | Msa1397450:intron | 25.0% |
| ! | AATGGAGATAAAAAAACTGA+AGG | - | tig0022151:102584-102603 | Msa1397450:CDS | 25.0% |
| ! | AGAAGAAAAGTTTCTTCAAA+TGG | - | tig0022151:102673-102692 | Msa1397450:CDS | 25.0% |
| !!! | CTTGCTTTTATTAAAAGCAT+CGG | - | tig0022151:102702-102721 | Msa1397450:CDS | 25.0% |
| !! | TAACTTTGGAATATTGTTGC+CGG | - | tig0022151:100569-100588 | Msa1397450:CDS | 30.0% |
| ! | AATTTGAAGTTTCAAGGTCA+GGG | + | tig0022151:100717-100736 | None:intergenic | 30.0% |
| TGAAATTCGATTCTCAAGAT+CGG | + | tig0022151:100920-100939 | None:intergenic | 30.0% | |
| ATCTTGAGAATCGAATTTCA+TGG | - | tig0022151:100920-100939 | Msa1397450:CDS | 30.0% | |
| !! | TTGTTATTAGGTTGGTTAAG+AGG | - | tig0022151:101022-101041 | Msa1397450:CDS | 30.0% |
| !!! | TTTTTGAGTTTGGATCATGA+TGG | - | tig0022151:101045-101064 | Msa1397450:CDS | 30.0% |
| TTTGGTTAAAGTTGCTAAGT+TGG | - | tig0022151:101086-101105 | Msa1397450:intron | 30.0% | |
| ! | CCACACAAGAAACATTTTAT+AGG | + | tig0022151:101441-101460 | None:intergenic | 30.0% |
| CCTATAAAATGTTTCTTGTG+TGG | - | tig0022151:101438-101457 | Msa1397450:intron | 30.0% | |
| !! | AAAGTCAATTTTGGTGAAGT+CGG | + | tig0022151:101756-101775 | None:intergenic | 30.0% |
| ATGATCCATTTCAGTAAAAC+AGG | + | tig0022151:101960-101979 | None:intergenic | 30.0% | |
| CTAATATAGATGTCAAAGCT+TGG | - | tig0022151:102014-102033 | Msa1397450:intron | 30.0% | |
| AAGTAACATACCATTAAGGT+TGG | - | tig0022151:102108-102127 | Msa1397450:intron | 30.0% | |
| ATTATTGGATCAAGATCAGA+TGG | + | tig0022151:102181-102200 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAGTCTGTGT+AGG | - | tig0022151:102334-102353 | Msa1397450:CDS | 30.0% | |
| ATGAAGCTGAAACTGAATTT+GGG | - | tig0022151:102748-102767 | Msa1397450:CDS | 30.0% | |
| !! | TAACTTTGGAATATTGTTGC+CGG | - | tig0022151:100569-100588 | Msa1397450:CDS | 30.0% |
| ! | AATTTGAAGTTTCAAGGTCA+GGG | + | tig0022151:100717-100736 | None:intergenic | 30.0% |
| TGAAATTCGATTCTCAAGAT+CGG | + | tig0022151:100920-100939 | None:intergenic | 30.0% | |
| ATCTTGAGAATCGAATTTCA+TGG | - | tig0022151:100920-100939 | Msa1397450:CDS | 30.0% | |
| !! | TTGTTATTAGGTTGGTTAAG+AGG | - | tig0022151:101022-101041 | Msa1397450:CDS | 30.0% |
| !!! | TTTTTGAGTTTGGATCATGA+TGG | - | tig0022151:101045-101064 | Msa1397450:CDS | 30.0% |
| TTTGGTTAAAGTTGCTAAGT+TGG | - | tig0022151:101086-101105 | Msa1397450:intron | 30.0% | |
| ! | CCACACAAGAAACATTTTAT+AGG | + | tig0022151:101441-101460 | None:intergenic | 30.0% |
| CCTATAAAATGTTTCTTGTG+TGG | - | tig0022151:101438-101457 | Msa1397450:intron | 30.0% | |
| !! | AAAGTCAATTTTGGTGAAGT+CGG | + | tig0022151:101756-101775 | None:intergenic | 30.0% |
| ATGATCCATTTCAGTAAAAC+AGG | + | tig0022151:101960-101979 | None:intergenic | 30.0% | |
| CTAATATAGATGTCAAAGCT+TGG | - | tig0022151:102014-102033 | Msa1397450:intron | 30.0% | |
| AAGTAACATACCATTAAGGT+TGG | - | tig0022151:102108-102127 | Msa1397450:intron | 30.0% | |
| ATTATTGGATCAAGATCAGA+TGG | + | tig0022151:102181-102200 | None:intergenic | 30.0% | |
| AAGAAAGAAAAAGTCTGTGT+AGG | - | tig0022151:102334-102353 | Msa1397450:CDS | 30.0% | |
| ATGAAGCTGAAACTGAATTT+GGG | - | tig0022151:102748-102767 | Msa1397450:CDS | 30.0% | |
| TCCAAACCAACAAGTAACTT+TGG | - | tig0022151:100555-100574 | Msa1397450:CDS | 35.0% | |
| ! | TCCAAAGTTACTTGTTGGTT+TGG | + | tig0022151:100559-100578 | None:intergenic | 35.0% |
| TAATGAAGCAATCCATGTCA+AGG | + | tig0022151:100612-100631 | None:intergenic | 35.0% | |
| !! | GATGATGGAACCGATTAAAT+CGG | + | tig0022151:100671-100690 | None:intergenic | 35.0% |
| ! | GAATTTGAAGTTTCAAGGTC+AGG | + | tig0022151:100718-100737 | None:intergenic | 35.0% |
| CATGATGTTGTTACACTTTC+AGG | + | tig0022151:100766-100785 | None:intergenic | 35.0% | |
| ! | CTGAAAGTGTAACAACATCA+TGG | - | tig0022151:100764-100783 | Msa1397450:CDS | 35.0% |
| CAACATCATGGATGAAGAAA+AGG | - | tig0022151:100776-100795 | Msa1397450:CDS | 35.0% | |
| !!! | CCATGTTAGCTGTTTTAAGA+AGG | + | tig0022151:100873-100892 | None:intergenic | 35.0% |
| CCTTCTTAAAACAGCTAACA+TGG | - | tig0022151:100870-100889 | Msa1397450:CDS | 35.0% | |
| CTTCTTTCAGTCATACTTGT+GGG | - | tig0022151:100980-100999 | Msa1397450:CDS | 35.0% | |
| AACAAGCTCAACATCCAAAA+GGG | + | tig0022151:101007-101026 | None:intergenic | 35.0% | |
| TAACAAGCTCAACATCCAAA+AGG | + | tig0022151:101008-101027 | None:intergenic | 35.0% | |
| !! | TGGATGTTGAGCTTGTTATT+AGG | - | tig0022151:101010-101029 | Msa1397450:CDS | 35.0% |
| !! | TGTTGAGCTTGTTATTAGGT+TGG | - | tig0022151:101014-101033 | Msa1397450:CDS | 35.0% |
| !!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | tig0022151:101035-101054 | Msa1397450:CDS | 35.0% |
| ! | GATCATGATGGAGTTAAAAC+TGG | - | tig0022151:101057-101076 | Msa1397450:intron | 35.0% |
| AATGTTTCTTGTGTGGTGAT+TGG | - | tig0022151:101445-101464 | Msa1397450:intron | 35.0% | |
| ACTCTCTGATATACGTTTGT+TGG | - | tig0022151:101481-101500 | Msa1397450:intron | 35.0% | |
| ! | TGATATACGTTTGTTGGACT+TGG | - | tig0022151:101487-101506 | Msa1397450:intron | 35.0% |
| TGTGTGACTTTCTAACTAGA+AGG | + | tig0022151:101516-101535 | None:intergenic | 35.0% | |
| ATTGTTTCATGTGTGTTCAC+CGG | - | tig0022151:101628-101647 | Msa1397450:intron | 35.0% | |
| ACTCACATATATGCGTTTGT+AGG | - | tig0022151:101657-101676 | Msa1397450:intron | 35.0% | |
| AATCAAGAGATATCGTTCGT+CGG | - | tig0022151:101703-101722 | Msa1397450:intron | 35.0% | |
| !! | AAGTCAATTTTGGTGAAGTC+GGG | + | tig0022151:101755-101774 | None:intergenic | 35.0% |
| TTCCAAATCTAGATAGGACA+TGG | - | tig0022151:101850-101869 | Msa1397450:intron | 35.0% | |
| ! | TGTTGATTGCAACTAGCTAT+TGG | + | tig0022151:101877-101896 | None:intergenic | 35.0% |
| GCAATCAACATTTCTCTACA+TGG | - | tig0022151:101887-101906 | Msa1397450:intron | 35.0% | |
| TGCATGCATCAGTATATATG+TGG | + | tig0022151:101925-101944 | None:intergenic | 35.0% | |
| ! | ATGTGCCTGTTTTACTGAAA+TGG | - | tig0022151:101952-101971 | Msa1397450:intron | 35.0% |
| TAACATACCATTAAGGTTGG+AGG | - | tig0022151:102111-102130 | Msa1397450:intron | 35.0% | |
| !! | GATGGTCCATATTTTAAGCT+CGG | + | tig0022151:102163-102182 | None:intergenic | 35.0% |
| GTCAAGACATCGGTAATTAT+TGG | + | tig0022151:102196-102215 | None:intergenic | 35.0% | |
| ATTCCATTCAGTCAAGACAT+CGG | + | tig0022151:102206-102225 | None:intergenic | 35.0% | |
| AGATTTAGATTGCATGCTGT+TGG | + | tig0022151:102230-102249 | None:intergenic | 35.0% | |
| CGAAATGAACACACAACAAA+TGG | - | tig0022151:102566-102585 | Msa1397450:CDS | 35.0% | |
| !! | TATTAAAAGCATCGGAGAGA+CGG | - | tig0022151:102710-102729 | Msa1397450:CDS | 35.0% |
| GATGAAGCTGAAACTGAATT+TGG | - | tig0022151:102747-102766 | Msa1397450:CDS | 35.0% | |
| ! | AAACTGAATTTGGGTTTGGA+AGG | - | tig0022151:102757-102776 | Msa1397450:CDS | 35.0% |
| !!! | GTACTAGTTTTCATGTCCAT+AGG | + | tig0022151:102789-102808 | None:intergenic | 35.0% |
| ! | AGAGATTTTCTCCACTTATG+AGG | + | tig0022151:102831-102850 | None:intergenic | 35.0% |
| TCCAAACCAACAAGTAACTT+TGG | - | tig0022151:100555-100574 | Msa1397450:CDS | 35.0% | |
| ! | TCCAAAGTTACTTGTTGGTT+TGG | + | tig0022151:100559-100578 | None:intergenic | 35.0% |
| TAATGAAGCAATCCATGTCA+AGG | + | tig0022151:100612-100631 | None:intergenic | 35.0% | |
| !! | GATGATGGAACCGATTAAAT+CGG | + | tig0022151:100671-100690 | None:intergenic | 35.0% |
| ! | GAATTTGAAGTTTCAAGGTC+AGG | + | tig0022151:100718-100737 | None:intergenic | 35.0% |
| CATGATGTTGTTACACTTTC+AGG | + | tig0022151:100766-100785 | None:intergenic | 35.0% | |
| ! | CTGAAAGTGTAACAACATCA+TGG | - | tig0022151:100764-100783 | Msa1397450:CDS | 35.0% |
| CAACATCATGGATGAAGAAA+AGG | - | tig0022151:100776-100795 | Msa1397450:CDS | 35.0% | |
| !!! | CCATGTTAGCTGTTTTAAGA+AGG | + | tig0022151:100873-100892 | None:intergenic | 35.0% |
| CCTTCTTAAAACAGCTAACA+TGG | - | tig0022151:100870-100889 | Msa1397450:CDS | 35.0% | |
| CTTCTTTCAGTCATACTTGT+GGG | - | tig0022151:100980-100999 | Msa1397450:CDS | 35.0% | |
| AACAAGCTCAACATCCAAAA+GGG | + | tig0022151:101007-101026 | None:intergenic | 35.0% | |
| TAACAAGCTCAACATCCAAA+AGG | + | tig0022151:101008-101027 | None:intergenic | 35.0% | |
| !! | TGGATGTTGAGCTTGTTATT+AGG | - | tig0022151:101010-101029 | Msa1397450:CDS | 35.0% |
| !! | TGTTGAGCTTGTTATTAGGT+TGG | - | tig0022151:101014-101033 | Msa1397450:CDS | 35.0% |
| !!! | GGTTAAGAGGTTTTTGAGTT+TGG | - | tig0022151:101035-101054 | Msa1397450:CDS | 35.0% |
| ! | GATCATGATGGAGTTAAAAC+TGG | - | tig0022151:101057-101076 | Msa1397450:intron | 35.0% |
| AATGTTTCTTGTGTGGTGAT+TGG | - | tig0022151:101445-101464 | Msa1397450:intron | 35.0% | |
| ACTCTCTGATATACGTTTGT+TGG | - | tig0022151:101481-101500 | Msa1397450:intron | 35.0% | |
| ! | TGATATACGTTTGTTGGACT+TGG | - | tig0022151:101487-101506 | Msa1397450:intron | 35.0% |
| TGTGTGACTTTCTAACTAGA+AGG | + | tig0022151:101516-101535 | None:intergenic | 35.0% | |
| ATTGTTTCATGTGTGTTCAC+CGG | - | tig0022151:101628-101647 | Msa1397450:intron | 35.0% | |
| ACTCACATATATGCGTTTGT+AGG | - | tig0022151:101657-101676 | Msa1397450:intron | 35.0% | |
| AATCAAGAGATATCGTTCGT+CGG | - | tig0022151:101703-101722 | Msa1397450:intron | 35.0% | |
| !! | AAGTCAATTTTGGTGAAGTC+GGG | + | tig0022151:101755-101774 | None:intergenic | 35.0% |
| TTCCAAATCTAGATAGGACA+TGG | - | tig0022151:101850-101869 | Msa1397450:intron | 35.0% | |
| ! | TGTTGATTGCAACTAGCTAT+TGG | + | tig0022151:101877-101896 | None:intergenic | 35.0% |
| GCAATCAACATTTCTCTACA+TGG | - | tig0022151:101887-101906 | Msa1397450:intron | 35.0% | |
| TGCATGCATCAGTATATATG+TGG | + | tig0022151:101925-101944 | None:intergenic | 35.0% | |
| ! | ATGTGCCTGTTTTACTGAAA+TGG | - | tig0022151:101952-101971 | Msa1397450:intron | 35.0% |
| TAACATACCATTAAGGTTGG+AGG | - | tig0022151:102111-102130 | Msa1397450:intron | 35.0% | |
| !! | GATGGTCCATATTTTAAGCT+CGG | + | tig0022151:102163-102182 | None:intergenic | 35.0% |
| GTCAAGACATCGGTAATTAT+TGG | + | tig0022151:102196-102215 | None:intergenic | 35.0% | |
| ATTCCATTCAGTCAAGACAT+CGG | + | tig0022151:102206-102225 | None:intergenic | 35.0% | |
| AGATTTAGATTGCATGCTGT+TGG | + | tig0022151:102230-102249 | None:intergenic | 35.0% | |
| CGAAATGAACACACAACAAA+TGG | - | tig0022151:102566-102585 | Msa1397450:CDS | 35.0% | |
| !! | TATTAAAAGCATCGGAGAGA+CGG | - | tig0022151:102710-102729 | Msa1397450:CDS | 35.0% |
| GATGAAGCTGAAACTGAATT+TGG | - | tig0022151:102747-102766 | Msa1397450:CDS | 35.0% | |
| ! | AAACTGAATTTGGGTTTGGA+AGG | - | tig0022151:102757-102776 | Msa1397450:CDS | 35.0% |
| !!! | GTACTAGTTTTCATGTCCAT+AGG | + | tig0022151:102789-102808 | None:intergenic | 35.0% |
| ! | AGAGATTTTCTCCACTTATG+AGG | + | tig0022151:102831-102850 | None:intergenic | 35.0% |
| !! | TGTTGGTTTGGACTTGTTTC+TGG | + | tig0022151:100547-100566 | None:intergenic | 40.0% |
| GGTGTTCGTTCCGATTTAAT+CGG | - | tig0022151:100658-100677 | Msa1397450:CDS | 40.0% | |
| TCACTCACTATGCTTCCAAA+TGG | - | tig0022151:100689-100708 | Msa1397450:CDS | 40.0% | |
| CATGGAATGGAATCTTTGTC+TGG | + | tig0022151:100835-100854 | None:intergenic | 40.0% | |
| !!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | tig0022151:100867-100886 | None:intergenic | 40.0% |
| CCACAAGTATGACTGAAAGA+AGG | + | tig0022151:100982-101001 | None:intergenic | 40.0% | |
| CCTTCTTTCAGTCATACTTG+TGG | - | tig0022151:100979-100998 | Msa1397450:CDS | 40.0% | |
| !! | AGTTAAAACTGGTGCTGCTT+TGG | - | tig0022151:101068-101087 | Msa1397450:intron | 40.0% |
| ATCTCAGGTTCAATTCTTCC+CGG | - | tig0022151:101297-101316 | Msa1397450:intron | 40.0% | |
| TAGTCCACTGAAATTGACAC+CGG | + | tig0022151:101319-101338 | None:intergenic | 40.0% | |
| !! | TGGACTAGTTTGACGACTTA+AGG | - | tig0022151:101332-101351 | Msa1397450:intron | 40.0% |
| !! | GGACTAGTTTGACGACTTAA+GGG | - | tig0022151:101333-101352 | Msa1397450:intron | 40.0% |
| TATATCAGAGAGTCTCATGC+TGG | + | tig0022151:101474-101493 | None:intergenic | 40.0% | |
| ACCGTTAGATTGACGAAGAT+CGG | - | tig0022151:101550-101569 | Msa1397450:intron | 40.0% | |
| TCCGATCTTCGTCAATCTAA+CGG | + | tig0022151:101554-101573 | None:intergenic | 40.0% | |
| CATATATGTGAGTCTCATGC+CGG | + | tig0022151:101650-101669 | None:intergenic | 40.0% | |
| ATCTCTTGATTGCGTGACTA+CGG | + | tig0022151:101694-101713 | None:intergenic | 40.0% | |
| TTCGTCGGATTGACAAAGAT+CGG | - | tig0022151:101718-101737 | Msa1397450:intron | 40.0% | |
| GTCCATGTCCTATCTAGATT+TGG | + | tig0022151:101855-101874 | None:intergenic | 40.0% | |
| GCTCTACCGAGCTTAAAATA+TGG | - | tig0022151:102154-102173 | Msa1397450:CDS | 40.0% | |
| TTACCGATGTCTTGACTGAA+TGG | - | tig0022151:102200-102219 | Msa1397450:CDS | 40.0% | |
| !! | TGTGTAGGTTGATTGATAGC+AGG | - | tig0022151:102349-102368 | Msa1397450:CDS | 40.0% |
| TTCATGCAGCTCAAAACGAA+CGG | - | tig0022151:102394-102413 | Msa1397450:CDS | 40.0% | |
| ACTTGAATAACAGCTCTCAC+AGG | + | tig0022151:102423-102442 | None:intergenic | 40.0% | |
| ACGGTTGAGTTTCGTTTGTT+CGG | + | tig0022151:102454-102473 | None:intergenic | 40.0% | |
| AACTCAACCGTTACGTTGAT+TGG | - | tig0022151:102463-102482 | Msa1397450:CDS | 40.0% | |
| AAGCACTCCAATCAACGTAA+CGG | + | tig0022151:102473-102492 | None:intergenic | 40.0% | |
| AACTGAAGGAAGACGTTTAC+AGG | - | tig0022151:102598-102617 | Msa1397450:CDS | 40.0% | |
| ! | GCTGAAACTGAATTTGGGTT+TGG | - | tig0022151:102753-102772 | Msa1397450:CDS | 40.0% |
| GGACATGAAAACTAGTACTG+TGG | - | tig0022151:102791-102810 | Msa1397450:CDS | 40.0% | |
| CTAGTACTGTGGTCAAAAGT+AGG | - | tig0022151:102802-102821 | Msa1397450:CDS | 40.0% | |
| AAAGTAGGACTCCTCATAAG+TGG | - | tig0022151:102817-102836 | Msa1397450:CDS | 40.0% | |
| !! | TGTTGGTTTGGACTTGTTTC+TGG | + | tig0022151:100547-100566 | None:intergenic | 40.0% |
| GGTGTTCGTTCCGATTTAAT+CGG | - | tig0022151:100658-100677 | Msa1397450:CDS | 40.0% | |
| TCACTCACTATGCTTCCAAA+TGG | - | tig0022151:100689-100708 | Msa1397450:CDS | 40.0% | |
| CATGGAATGGAATCTTTGTC+TGG | + | tig0022151:100835-100854 | None:intergenic | 40.0% | |
| !!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | tig0022151:100867-100886 | None:intergenic | 40.0% |
| CCACAAGTATGACTGAAAGA+AGG | + | tig0022151:100982-101001 | None:intergenic | 40.0% | |
| CCTTCTTTCAGTCATACTTG+TGG | - | tig0022151:100979-100998 | Msa1397450:CDS | 40.0% | |
| !! | AGTTAAAACTGGTGCTGCTT+TGG | - | tig0022151:101068-101087 | Msa1397450:intron | 40.0% |
| ATCTCAGGTTCAATTCTTCC+CGG | - | tig0022151:101297-101316 | Msa1397450:intron | 40.0% | |
| TAGTCCACTGAAATTGACAC+CGG | + | tig0022151:101319-101338 | None:intergenic | 40.0% | |
| !! | TGGACTAGTTTGACGACTTA+AGG | - | tig0022151:101332-101351 | Msa1397450:intron | 40.0% |
| !! | GGACTAGTTTGACGACTTAA+GGG | - | tig0022151:101333-101352 | Msa1397450:intron | 40.0% |
| TATATCAGAGAGTCTCATGC+TGG | + | tig0022151:101474-101493 | None:intergenic | 40.0% | |
| ACCGTTAGATTGACGAAGAT+CGG | - | tig0022151:101550-101569 | Msa1397450:intron | 40.0% | |
| TCCGATCTTCGTCAATCTAA+CGG | + | tig0022151:101554-101573 | None:intergenic | 40.0% | |
| CATATATGTGAGTCTCATGC+CGG | + | tig0022151:101650-101669 | None:intergenic | 40.0% | |
| ATCTCTTGATTGCGTGACTA+CGG | + | tig0022151:101694-101713 | None:intergenic | 40.0% | |
| TTCGTCGGATTGACAAAGAT+CGG | - | tig0022151:101718-101737 | Msa1397450:intron | 40.0% | |
| GTCCATGTCCTATCTAGATT+TGG | + | tig0022151:101855-101874 | None:intergenic | 40.0% | |
| GCTCTACCGAGCTTAAAATA+TGG | - | tig0022151:102154-102173 | Msa1397450:CDS | 40.0% | |
| TTACCGATGTCTTGACTGAA+TGG | - | tig0022151:102200-102219 | Msa1397450:CDS | 40.0% | |
| !! | TGTGTAGGTTGATTGATAGC+AGG | - | tig0022151:102349-102368 | Msa1397450:CDS | 40.0% |
| TTCATGCAGCTCAAAACGAA+CGG | - | tig0022151:102394-102413 | Msa1397450:CDS | 40.0% | |
| ACTTGAATAACAGCTCTCAC+AGG | + | tig0022151:102423-102442 | None:intergenic | 40.0% | |
| ACGGTTGAGTTTCGTTTGTT+CGG | + | tig0022151:102454-102473 | None:intergenic | 40.0% | |
| AACTCAACCGTTACGTTGAT+TGG | - | tig0022151:102463-102482 | Msa1397450:CDS | 40.0% | |
| AAGCACTCCAATCAACGTAA+CGG | + | tig0022151:102473-102492 | None:intergenic | 40.0% | |
| AACTGAAGGAAGACGTTTAC+AGG | - | tig0022151:102598-102617 | Msa1397450:CDS | 40.0% | |
| ! | GCTGAAACTGAATTTGGGTT+TGG | - | tig0022151:102753-102772 | Msa1397450:CDS | 40.0% |
| GGACATGAAAACTAGTACTG+TGG | - | tig0022151:102791-102810 | Msa1397450:CDS | 40.0% | |
| CTAGTACTGTGGTCAAAAGT+AGG | - | tig0022151:102802-102821 | Msa1397450:CDS | 40.0% | |
| AAAGTAGGACTCCTCATAAG+TGG | - | tig0022151:102817-102836 | Msa1397450:CDS | 40.0% | |
| AGATGCATGCATCCTTGACA+TGG | - | tig0022151:100597-100616 | Msa1397450:CDS | 45.0% | |
| ! | GGAAGCATAGTGAGTGATGA+TGG | + | tig0022151:100686-100705 | None:intergenic | 45.0% |
| ! | TGGTGGAAGAACACTGACTA+AGG | + | tig0022151:100815-100834 | None:intergenic | 45.0% |
| GGAATGGAATCTTTGTCTGG+TGG | + | tig0022151:100832-100851 | None:intergenic | 45.0% | |
| AAGGAGGAAGTTGCATGGAA+TGG | + | tig0022151:100848-100867 | None:intergenic | 45.0% | |
| !!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | tig0022151:100864-100883 | None:intergenic | 45.0% |
| ! | TCATACTTGTGGGACCCTTT+TGG | - | tig0022151:100990-101009 | Msa1397450:CDS | 45.0% |
| GATTGTTACCTTGCTGAAGC+TGG | - | tig0022151:101111-101130 | Msa1397450:intron | 45.0% | |
| TTACCTTGCTGAAGCTGGTT+TGG | - | tig0022151:101116-101135 | Msa1397450:intron | 45.0% | |
| !! | TCTCAGTTTGTTGCACTTGC+TGG | - | tig0022151:101156-101175 | Msa1397450:intron | 45.0% |
| TCAGTAGCTCTTGCATGGTT+AGG | + | tig0022151:101189-101208 | None:intergenic | 45.0% | |
| CATCATCAGTAGCTCTTGCA+TGG | + | tig0022151:101194-101213 | None:intergenic | 45.0% | |
| CATGCAAGAGCTACTGATGA+TGG | - | tig0022151:101192-101211 | Msa1397450:intron | 45.0% | |
| AGTCCACTGAAATTGACACC+GGG | + | tig0022151:101318-101337 | None:intergenic | 45.0% | |
| TCTCTTGATTGCGTGACTAC+GGG | + | tig0022151:101693-101712 | None:intergenic | 45.0% | |
| ACTAGCTCCTCCAACCTTAA+TGG | + | tig0022151:102121-102140 | None:intergenic | 45.0% | |
| !! | GTTTTGAGCTGCATGAAGTG+AGG | + | tig0022151:102391-102410 | None:intergenic | 45.0% |
| GTGCTTCTTTCAGTAGCTTG+AGG | - | tig0022151:102487-102506 | Msa1397450:CDS | 45.0% | |
| TTGAGGAGTCCAAGTGGATA+CGG | - | tig0022151:102504-102523 | Msa1397450:CDS | 45.0% | |
| CAATGTCATGCAAGCACAGA+TGG | - | tig0022151:102635-102654 | Msa1397450:CDS | 45.0% | |
| GTTTGGAAGGCAAACACCTA+TGG | - | tig0022151:102770-102789 | Msa1397450:CDS | 45.0% | |
| AGATGCATGCATCCTTGACA+TGG | - | tig0022151:100597-100616 | Msa1397450:CDS | 45.0% | |
| ! | GGAAGCATAGTGAGTGATGA+TGG | + | tig0022151:100686-100705 | None:intergenic | 45.0% |
| ! | TGGTGGAAGAACACTGACTA+AGG | + | tig0022151:100815-100834 | None:intergenic | 45.0% |
| GGAATGGAATCTTTGTCTGG+TGG | + | tig0022151:100832-100851 | None:intergenic | 45.0% | |
| AAGGAGGAAGTTGCATGGAA+TGG | + | tig0022151:100848-100867 | None:intergenic | 45.0% | |
| !!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | tig0022151:100864-100883 | None:intergenic | 45.0% |
| ! | TCATACTTGTGGGACCCTTT+TGG | - | tig0022151:100990-101009 | Msa1397450:CDS | 45.0% |
| GATTGTTACCTTGCTGAAGC+TGG | - | tig0022151:101111-101130 | Msa1397450:intron | 45.0% | |
| TTACCTTGCTGAAGCTGGTT+TGG | - | tig0022151:101116-101135 | Msa1397450:intron | 45.0% | |
| !! | TCTCAGTTTGTTGCACTTGC+TGG | - | tig0022151:101156-101175 | Msa1397450:intron | 45.0% |
| TCAGTAGCTCTTGCATGGTT+AGG | + | tig0022151:101189-101208 | None:intergenic | 45.0% | |
| CATCATCAGTAGCTCTTGCA+TGG | + | tig0022151:101194-101213 | None:intergenic | 45.0% | |
| CATGCAAGAGCTACTGATGA+TGG | - | tig0022151:101192-101211 | Msa1397450:intron | 45.0% | |
| AGTCCACTGAAATTGACACC+GGG | + | tig0022151:101318-101337 | None:intergenic | 45.0% | |
| TCTCTTGATTGCGTGACTAC+GGG | + | tig0022151:101693-101712 | None:intergenic | 45.0% | |
| ACTAGCTCCTCCAACCTTAA+TGG | + | tig0022151:102121-102140 | None:intergenic | 45.0% | |
| !! | GTTTTGAGCTGCATGAAGTG+AGG | + | tig0022151:102391-102410 | None:intergenic | 45.0% |
| GTGCTTCTTTCAGTAGCTTG+AGG | - | tig0022151:102487-102506 | Msa1397450:CDS | 45.0% | |
| TTGAGGAGTCCAAGTGGATA+CGG | - | tig0022151:102504-102523 | Msa1397450:CDS | 45.0% | |
| CAATGTCATGCAAGCACAGA+TGG | - | tig0022151:102635-102654 | Msa1397450:CDS | 45.0% | |
| GTTTGGAAGGCAAACACCTA+TGG | - | tig0022151:102770-102789 | Msa1397450:CDS | 45.0% | |
| GGATGCATGCATCTTCGAAC+CGG | + | tig0022151:100591-100610 | None:intergenic | 50.0% | |
| TTCAAGGTCAGGGAGCCATT+TGG | + | tig0022151:100707-100726 | None:intergenic | 50.0% | |
| CATCCAAACCAGCTTCAGCA+AGG | + | tig0022151:101122-101141 | None:intergenic | 50.0% | |
| ! | CTTCCCGGTGTCAATTTCAG+TGG | - | tig0022151:101312-101331 | Msa1397450:intron | 50.0% |
| CTTTCTTGCTTCGACACGCT+TGG | + | tig0022151:102321-102340 | None:intergenic | 50.0% | |
| AGTAGCTTGAGGAGTCCAAG+TGG | - | tig0022151:102498-102517 | Msa1397450:CDS | 50.0% | |
| AACACACCACCGTATCCACT+TGG | + | tig0022151:102516-102535 | None:intergenic | 50.0% | |
| AAGTGGATACGGTGGTGTGT+TGG | - | tig0022151:102515-102534 | Msa1397450:CDS | 50.0% | |
| TAGAAAGACACCGTGCCTGT+GGG | + | tig0022151:102542-102561 | None:intergenic | 50.0% | |
| TTAGAAAGACACCGTGCCTG+TGG | + | tig0022151:102543-102562 | None:intergenic | 50.0% | |
| GCAAGCACAGATGGACAAGA+TGG | - | tig0022151:102644-102663 | Msa1397450:CDS | 50.0% | |
| GGATGCATGCATCTTCGAAC+CGG | + | tig0022151:100591-100610 | None:intergenic | 50.0% | |
| TTCAAGGTCAGGGAGCCATT+TGG | + | tig0022151:100707-100726 | None:intergenic | 50.0% | |
| CATCCAAACCAGCTTCAGCA+AGG | + | tig0022151:101122-101141 | None:intergenic | 50.0% | |
| ! | CTTCCCGGTGTCAATTTCAG+TGG | - | tig0022151:101312-101331 | Msa1397450:intron | 50.0% |
| CTTTCTTGCTTCGACACGCT+TGG | + | tig0022151:102321-102340 | None:intergenic | 50.0% | |
| AGTAGCTTGAGGAGTCCAAG+TGG | - | tig0022151:102498-102517 | Msa1397450:CDS | 50.0% | |
| AACACACCACCGTATCCACT+TGG | + | tig0022151:102516-102535 | None:intergenic | 50.0% | |
| AAGTGGATACGGTGGTGTGT+TGG | - | tig0022151:102515-102534 | Msa1397450:CDS | 50.0% | |
| TAGAAAGACACCGTGCCTGT+GGG | + | tig0022151:102542-102561 | None:intergenic | 50.0% | |
| TTAGAAAGACACCGTGCCTG+TGG | + | tig0022151:102543-102562 | None:intergenic | 50.0% | |
| GCAAGCACAGATGGACAAGA+TGG | - | tig0022151:102644-102663 | Msa1397450:CDS | 50.0% | |
| AGGCGAAGGAGGAAGTTGCA+TGG | + | tig0022151:100853-100872 | None:intergenic | 55.0% | |
| GCTGCATGAAGTGAGGCTTC+TGG | + | tig0022151:102384-102403 | None:intergenic | 55.0% | |
| AGGAGTCCAAGTGGATACGG+TGG | - | tig0022151:102507-102526 | Msa1397450:CDS | 55.0% | |
| AGGCGAAGGAGGAAGTTGCA+TGG | + | tig0022151:100853-100872 | None:intergenic | 55.0% | |
| GCTGCATGAAGTGAGGCTTC+TGG | + | tig0022151:102384-102403 | None:intergenic | 55.0% | |
| AGGAGTCCAAGTGGATACGG+TGG | - | tig0022151:102507-102526 | Msa1397450:CDS | 55.0% | |
| GTGTGTTGGACCCACAGGCA+CGG | - | tig0022151:102529-102548 | Msa1397450:CDS | 60.0% | |
| GTGTGTTGGACCCACAGGCA+CGG | - | tig0022151:102529-102548 | Msa1397450:CDS | 60.0% | |
| CGGTGGTGTGTTGGACCCAC+AGG | - | tig0022151:102524-102543 | Msa1397450:CDS | 65.0% | |
| CGGTGGTGTGTTGGACCCAC+AGG | - | tig0022151:102524-102543 | Msa1397450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022151 | gene | 100520 | 102857 | 100520 | ID=Msa1397450;Name=Msa1397450 |
| tig0022151 | mRNA | 100520 | 102857 | 100520 | ID=Msa1397450-mRNA-1;Parent=Msa1397450;Name=Msa1397450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|423 |
| tig0022151 | exon | 102132 | 102857 | 102132 | ID=Msa1397450-mRNA-1:exon:16069;Parent=Msa1397450-mRNA-1 |
| tig0022151 | exon | 100520 | 101065 | 100520 | ID=Msa1397450-mRNA-1:exon:16068;Parent=Msa1397450-mRNA-1 |
| tig0022151 | CDS | 102132 | 102857 | 102132 | ID=Msa1397450-mRNA-1:cds;Parent=Msa1397450-mRNA-1 |
| tig0022151 | CDS | 100520 | 101065 | 100520 | ID=Msa1397450-mRNA-1:cds;Parent=Msa1397450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
