AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260460 MtrunA17_Chr2g0332281 97.400 423 11 0 1 423 1 423 0.0 858
Msa0260460 MtrunA17_Chr4g0003891 71.393 402 98 6 23 409 45 444 0.0 566
Msa0260460 MtrunA17_Chr2g0279481 34.100 478 240 8 10 423 219 685 4.11e-80 260
Msa0260460 MtrunA17_Chr4g0050021 37.011 435 214 9 7 384 215 646 9.73e-80 259
Msa0260460 MtrunA17_Chr4g0010091 39.118 363 194 6 25 364 212 570 7.70e-69 229
Msa0260460 MtrunA17_Chr5g0412591 40.000 310 141 5 26 293 183 489 7.71e-65 218
Msa0260460 MtrunA17_Chr8g0382231 37.919 298 156 5 25 294 216 512 2.98e-63 214
Msa0260460 MtrunA17_Chr2g0285511 33.505 388 230 6 25 392 215 594 3.67e-63 214
Msa0260460 MtrunA17_Chr7g0268781 34.965 429 218 12 30 420 219 624 5.03e-63 214
Msa0260460 MtrunA17_Chr7g0245201 37.731 379 210 9 25 384 237 608 2.76e-62 212
Msa0260460 MtrunA17_Chr2g0303541 35.279 394 205 9 25 378 216 599 1.23e-61 210
Msa0260460 MtrunA17_Chr1g0195911 34.223 412 217 12 30 399 216 615 4.89e-61 208
Msa0260460 MtrunA17_Chr1g0207461 35.294 425 208 14 26 407 215 615 4.45e-59 203
Msa0260460 MtrunA17_Chr1g0150191 40.909 286 137 7 26 292 215 487 1.60e-56 196
Msa0260460 MtrunA17_Chr1g0181181 32.877 365 196 9 25 356 191 539 2.12e-56 195
Msa0260460 MtrunA17_Chr1g0199631 32.105 380 218 7 25 380 177 540 7.87e-56 193
Msa0260460 MtrunA17_Chr8g0374011 39.865 296 152 4 25 298 228 519 3.12e-55 193
Msa0260460 MtrunA17_Chr5g0401341 40.989 283 139 5 26 293 214 483 6.41e-55 192
Msa0260460 MtrunA17_Chr5g0401451 36.036 333 186 6 26 340 221 544 3.96e-54 190
Msa0260460 MtrunA17_Chr4g0053841 36.729 373 195 10 26 368 197 558 1.44e-53 188
Msa0260460 MtrunA17_Chr4g0076521 36.364 297 176 4 6 293 183 475 5.18e-51 181
Msa0260460 MtrunA17_Chr3g0108331 31.566 396 231 9 26 404 185 557 1.53e-50 179
Msa0260460 MtrunA17_Chr2g0320691 34.615 286 170 3 25 294 213 497 1.97e-47 172
Msa0260460 MtrunA17_Chr1g0191711 28.488 344 214 7 13 349 210 528 6.89e-47 169
Msa0260460 MtrunA17_Chr8g0367891 35.314 303 142 6 26 293 201 484 2.97e-46 168
Msa0260460 MtrunA17_Chr2g0290741 35.612 278 154 5 26 293 203 465 5.32e-40 150
Msa0260460 MtrunA17_Chr5g0432861 30.070 286 183 2 26 294 186 471 1.01e-39 149
Msa0260460 MtrunA17_Chr4g0023801 33.333 291 161 6 106 372 257 538 3.89e-35 136
Msa0260460 MtrunA17_Chr4g0037661 36.082 194 122 1 101 294 276 467 1.25e-31 126
Msa0260460 MtrunA17_Chr1g0163311 35.000 180 112 2 112 291 283 457 7.84e-29 118
Msa0260460 MtrunA17_Chr2g0280541 27.799 259 170 6 37 294 131 373 3.65e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260460 AT3G15570.1 58.901 455 152 8 1 423 1 452 1.14e-180 511
Msa0260460 AT1G52770.1 58.182 440 155 9 12 423 16 454 3.09e-171 487
Msa0260460 AT5G03250.2 36.340 377 197 9 25 377 108 465 4.54e-65 216
Msa0260460 AT5G64330.1 38.235 340 149 6 92 374 373 708 5.47e-65 221
Msa0260460 AT5G03250.1 36.340 377 197 9 25 377 220 577 4.41e-64 216
Msa0260460 AT5G64330.3 45.957 235 96 2 92 295 314 548 6.41e-61 208
Msa0260460 AT5G64330.2 45.957 235 96 2 92 295 373 607 1.95e-60 208
Msa0260460 AT1G30440.1 34.121 381 208 7 25 366 217 593 5.64e-60 207
Msa0260460 AT5G13600.1 34.626 361 209 7 25 368 211 561 2.31e-59 204
Msa0260460 AT5G48800.1 35.696 381 196 8 25 376 222 582 7.34e-58 200
Msa0260460 AT1G03010.2 37.500 360 169 11 29 340 185 536 1.14e-57 199
Msa0260460 AT3G08660.3 33.989 356 188 6 26 357 140 472 1.14e-57 197
Msa0260460 AT2G47860.5 34.615 390 194 9 30 374 96 469 1.87e-57 197
Msa0260460 AT2G47860.2 34.615 390 194 9 30 374 96 469 1.87e-57 197
Msa0260460 AT5G66560.4 41.275 298 156 5 25 311 218 507 2.11e-57 199
Msa0260460 AT1G03010.1 37.500 360 169 11 29 340 212 563 2.43e-57 199
Msa0260460 AT5G66560.3 41.275 298 156 5 25 311 228 517 2.63e-57 199
Msa0260460 AT1G03010.3 37.604 359 168 11 30 340 212 562 2.85e-57 199
Msa0260460 AT3G08660.1 33.989 356 188 6 26 357 200 532 3.39e-57 197
Msa0260460 AT5G66560.1 41.275 298 156 5 25 311 257 546 4.13e-57 199
Msa0260460 AT2G47860.1 34.615 390 194 9 30 374 214 587 1.63e-56 197
Msa0260460 AT2G47860.3 34.615 390 194 9 30 374 237 610 2.16e-56 197
Msa0260460 AT5G67385.4 39.068 279 152 5 26 294 160 430 3.75e-56 194
Msa0260460 AT5G67385.5 39.068 279 152 5 26 294 160 430 3.75e-56 194
Msa0260460 AT5G67385.2 39.068 279 152 5 26 294 160 430 3.75e-56 194
Msa0260460 AT5G67385.3 39.068 279 152 5 26 294 160 430 3.75e-56 194
Msa0260460 AT5G67385.1 39.068 279 152 5 26 294 205 475 6.90e-56 194
Msa0260460 AT2G30520.2 35.905 337 205 3 26 351 143 479 1.36e-55 192
Msa0260460 AT2G30520.3 35.905 337 205 3 26 351 143 479 1.36e-55 192
Msa0260460 AT2G30520.1 35.905 337 205 3 26 351 191 527 2.73e-55 192
Msa0260460 AT3G26490.1 37.171 304 137 5 26 293 222 507 1.62e-53 188
Msa0260460 AT3G26490.3 37.171 304 137 5 26 293 222 507 1.62e-53 188
Msa0260460 AT3G26490.4 37.171 304 137 5 26 293 222 507 1.62e-53 188
Msa0260460 AT5G10250.2 32.533 375 219 7 23 370 212 579 4.69e-53 187
Msa0260460 AT4G31820.2 39.223 283 133 7 26 295 161 417 3.98e-52 182
Msa0260460 AT4G31820.1 39.085 284 134 7 26 296 214 471 1.10e-51 182
Msa0260460 AT5G10250.1 32.329 365 218 7 23 370 212 564 1.27e-51 183
Msa0260460 AT2G14820.2 33.607 366 195 7 26 359 211 560 1.31e-50 181
Msa0260460 AT2G14820.1 33.607 366 195 7 26 359 211 560 1.31e-50 181
Msa0260460 AT1G67900.5 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT1G67900.1 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT1G67900.3 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT1G67900.6 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT1G67900.2 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT1G67900.4 36.928 306 155 4 26 293 204 509 3.60e-50 179
Msa0260460 AT3G08570.1 32.044 362 208 8 25 359 213 563 2.13e-48 174
Msa0260460 AT4G37590.1 37.868 272 145 5 26 295 218 467 1.47e-47 171
Msa0260460 AT5G47800.3 34.228 298 182 4 4 291 181 474 2.51e-47 171
Msa0260460 AT5G47800.1 34.228 298 182 4 4 291 181 474 2.51e-47 171
Msa0260460 AT5G47800.4 34.228 298 182 4 4 291 181 474 2.51e-47 171
Msa0260460 AT3G44820.1 30.831 373 217 7 25 359 214 583 8.04e-47 171
Msa0260460 AT5G47800.2 34.228 298 182 4 4 291 294 587 1.23e-46 170
Msa0260460 AT3G50840.2 33.333 357 226 5 25 381 161 505 2.49e-46 167
Msa0260460 AT3G50840.3 33.333 357 226 5 25 381 161 505 2.49e-46 167
Msa0260460 AT3G50840.1 33.333 357 226 5 25 381 197 541 5.30e-46 167
Msa0260460 AT2G23050.2 36.900 271 141 6 26 295 95 336 1.10e-45 162
Msa0260460 AT2G23050.1 36.900 271 141 6 26 295 211 452 6.36e-45 162
Msa0260460 AT5G67440.2 36.823 277 157 5 26 293 172 439 1.75e-44 162
Msa0260460 AT5G67440.3 36.823 277 157 5 26 293 209 476 3.65e-44 162
Msa0260460 AT5G67440.1 36.823 277 157 5 26 293 209 476 3.65e-44 162
Msa0260460 AT3G49970.1 33.203 256 154 6 26 278 153 394 6.53e-38 144
Msa0260460 AT3G49970.2 33.203 256 154 6 26 278 153 394 6.53e-38 144
Msa0260460 AT2G47860.6 37.398 246 105 6 30 242 237 466 7.27e-35 135
Msa0260460 AT2G47860.4 37.398 246 105 6 30 242 214 443 8.17e-35 134
Msa0260460 AT5G66560.2 37.991 229 125 4 25 242 257 479 1.96e-33 131
Msa0260460 AT3G26490.2 33.858 254 114 5 26 243 222 457 4.93e-33 130
Msa0260460 AT3G08660.2 31.950 241 131 4 26 250 200 423 6.44e-30 120
Msa0260460 AT3G19850.1 34.896 192 124 1 101 291 272 463 3.18e-29 120
Msa0260460 AT3G03510.1 33.468 248 143 6 51 294 133 362 3.98e-29 119
Msa0260460 AT3G22104.4 35.979 189 115 3 91 278 162 345 2.80e-27 113
Msa0260460 AT3G22104.2 35.979 189 115 3 91 278 162 345 2.80e-27 113
Msa0260460 AT3G22104.3 35.979 189 115 3 91 278 162 345 2.80e-27 113
Msa0260460 AT3G22104.1 35.567 194 119 3 86 278 232 420 3.73e-27 113
Msa0260460 AT1G50280.2 32.275 189 126 1 101 287 239 427 3.53e-25 107
Msa0260460 AT1G50280.1 32.275 189 126 1 101 287 272 460 3.73e-25 108
Msa0260460 AT5G17580.2 30.233 258 158 4 43 294 217 458 3.41e-23 102
Msa0260460 AT5G17580.1 30.233 258 158 4 43 294 202 443 3.46e-23 102
Msa0260460 AT5G48130.1 32.374 139 92 2 191 328 367 504 1.66e-18 88.2

Find 82 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGTTTGGACTTGTTTC+TGG 0.094629 2_2:+58013787 None:intergenic
CATGATGTTGTTACACTTTC+AGG 0.101878 2_2:+58013568 None:intergenic
GATGAAGCTGAAACTGAATT+TGG 0.156976 2_2:-58011590 Msa0260460:CDS
TCTCAGTTTGTTGCACTTGC+TGG 0.262022 2_2:-58013175 Msa0260460:CDS
TCATACTTGTGGGACCCTTT+TGG 0.268326 2_2:-58013341 Msa0260460:CDS
AACTCAACCGTTACGTTGAT+TGG 0.275986 2_2:-58011874 Msa0260460:CDS
AACTGAAGGAAGACGTTTAC+AGG 0.316073 2_2:-58011739 Msa0260460:CDS
TTACCTTGCTGAAGCTGGTT+TGG 0.320602 2_2:-58013215 Msa0260460:CDS
TCCAAAGTTACTTGTTGGTT+TGG 0.335510 2_2:+58013775 None:intergenic
CTTTCAAACATCAAACAAAA+AGG 0.338570 2_2:-58013694 Msa0260460:CDS
TGGATGTTGAGCTTGTTATT+AGG 0.354204 2_2:-58013321 Msa0260460:CDS
CTTTCTTGCTTCGACACGCT+TGG 0.365749 2_2:+58012019 None:intergenic
ATGAAGCTGAAACTGAATTT+GGG 0.381070 2_2:-58011589 Msa0260460:CDS
AGAAGAAAAGTTTCTTCAAA+TGG 0.382710 2_2:-58011664 Msa0260460:CDS
TAACTTTGGAATATTGTTGC+CGG 0.401723 2_2:-58013762 Msa0260460:CDS
AATTTGAATTTGAAGTTTCA+AGG 0.404146 2_2:+58013611 None:intergenic
AATATTCCAAAGTTACTTGT+TGG 0.406337 2_2:+58013770 None:intergenic
AGTTAAAACTGGTGCTGCTT+TGG 0.406920 2_2:-58013263 Msa0260460:CDS
GGTGTTCGTTCCGATTTAAT+CGG 0.410626 2_2:-58013673 Msa0260460:CDS
GCTGAAACTGAATTTGGGTT+TGG 0.417674 2_2:-58011584 Msa0260460:CDS
TTTGGTTAAAGTTGCTAAGT+TGG 0.421971 2_2:-58013245 Msa0260460:CDS
GGAAATGAACACACAACAAA+TGG 0.426272 2_2:-58011771 Msa0260460:CDS
TTGTTATTAGGTTGGTTAAG+AGG 0.429280 2_2:-58013309 Msa0260460:CDS
GAATTTGAAGTTTCAAGGTC+AGG 0.429853 2_2:+58013616 None:intergenic
CATGGAATGGAATCTTTGTC+TGG 0.430911 2_2:+58013499 None:intergenic
GGAAGCATAGTTAGTGATGA+TGG 0.435073 2_2:+58013648 None:intergenic
ACGGTTGAGTTTCGTTTGTT+CGG 0.438226 2_2:+58011886 None:intergenic
GATCATGATGGAGTTAAAAC+TGG 0.446409 2_2:-58013274 Msa0260460:CDS
TCCAAACCAACAAGTAACTT+TGG 0.448402 2_2:-58013776 Msa0260460:CDS
CAACATCATGGATGAAGAAA+AGG 0.449234 2_2:-58013555 Msa0260460:CDS
GCTGCATGAAGTGAGGCTTC+TGG 0.449394 2_2:+58011956 None:intergenic
ATCTTGAGAATCGAATTTCA+TGG 0.451747 2_2:-58013411 Msa0260460:CDS
GATTGTTACCTTGCTGAAGC+TGG 0.451910 2_2:-58013220 Msa0260460:CDS
CTTCTTTCAGTCATACTTGT+GGG 0.454989 2_2:-58013351 Msa0260460:CDS
TCAGTAGCTCTTGCATGGTT+AGG 0.455773 2_2:+58013145 None:intergenic
TTCAAGGTCAGGGAGCCATT+TGG 0.459356 2_2:+58013627 None:intergenic
TAACAAGCTCAACATCCAAA+AGG 0.463547 2_2:+58013326 None:intergenic
TGTTGAGCTTGTTATTAGGT+TGG 0.469392 2_2:-58013317 Msa0260460:CDS
GATGATGGAACCGATTAAAT+CGG 0.471736 2_2:+58013663 None:intergenic
GGATGCATGCATCTTCGAAC+CGG 0.476249 2_2:+58013743 None:intergenic
CCTTCTTAAAACAGCTAACA+TGG 0.480139 2_2:-58013461 Msa0260460:CDS
GTGCTTCTTTCAGTAGCTTG+AGG 0.496152 2_2:-58011850 Msa0260460:CDS
CAATGTCATGCAAGCACAGA+TGG 0.500225 2_2:-58011702 Msa0260460:CDS
GTTTGGAAGGCAAACACCTA+TGG 0.502755 2_2:-58011567 Msa0260460:CDS
CTAGTACTGTGGTCAAAAGT+AGG 0.505830 2_2:-58011535 Msa0260460:CDS
AACAAGCTCAACATCCAAAA+GGG 0.506792 2_2:+58013327 None:intergenic
AATTTGAAGTTTCAAGGTCA+GGG 0.510124 2_2:+58013617 None:intergenic
CATGCAAGAGCTACTGATGA+TGG 0.510855 2_2:-58013139 Msa0260460:CDS
AAACTGAATTTGGGTTTGGA+AGG 0.516582 2_2:-58011580 Msa0260460:CDS
TTGAGGAGTCCAAGTGGATA+CGG 0.521600 2_2:-58011833 Msa0260460:CDS
AACACACCACCGTATCCACT+TGG 0.522164 2_2:+58011824 None:intergenic
TGGTGGAAGAACACTGACTA+AGG 0.524858 2_2:+58013519 None:intergenic
AAAGTAGGACTCCTCATAAG+TGG 0.528795 2_2:-58011520 Msa0260460:CDS
TACTTTAAGATAAGTGTCAA+TGG 0.534706 2_2:+58013105 None:intergenic
AAGGAGGAAGTTGCATGGAA+TGG 0.540539 2_2:+58013486 None:intergenic
GGCACGGTGTCTTTCTAAGC+GGG 0.543720 2_2:-58011792 Msa0260460:CDS
CTGAAAGTGTAACAACATCA+TGG 0.545813 2_2:-58013567 Msa0260460:CDS
CGGTGGTGTGTTGGACCCAC+AGG 0.552148 2_2:-58011813 Msa0260460:CDS
TATTAAAAGCATCGGAGAGA+CGG 0.553022 2_2:-58011627 Msa0260460:CDS
TCACTAACTATGCTTCCAAA+TGG 0.554897 2_2:-58013642 Msa0260460:CDS
AGATGCATGCATCCTTGACA+TGG 0.556346 2_2:-58013734 Msa0260460:CDS
TGTGTAGGTTGATTGATAGC+AGG 0.557107 2_2:-58011988 Msa0260460:CDS
GCAAGCACAGATGGACAAGA+TGG 0.567785 2_2:-58011693 Msa0260460:CDS
TGAAATTCGATTCTCAAGAT+CGG 0.569341 2_2:+58013414 None:intergenic
CCTTCTTTCAGTCATACTTG+TGG 0.572660 2_2:-58013352 Msa0260460:CDS
CATCATCAGTAGCTCTTGCA+TGG 0.574138 2_2:+58013140 None:intergenic
TTAGAAAGACACCGTGCCTG+TGG 0.583694 2_2:+58011797 None:intergenic
GGACATGAAAACTAGTACTG+TGG 0.589920 2_2:-58011546 Msa0260460:CDS
TAATGAAGCAATCCATGTCA+AGG 0.592917 2_2:+58013722 None:intergenic
ACTTGAATAACAGCTCTCAC+AGG 0.608705 2_2:+58011917 None:intergenic
CCACAAGTATGACTGAAAGA+AGG 0.608970 2_2:+58013352 None:intergenic
AAGTGGATACGGTGGTGTGT+TGG 0.620100 2_2:-58011822 Msa0260460:CDS
TAGAAAGACACCGTGCCTGT+GGG 0.630868 2_2:+58011798 None:intergenic
TTCATGCAGCTCAAAACGAA+CGG 0.639540 2_2:-58011943 Msa0260460:CDS
AGGCGAAGGAGGAAGTTGCA+TGG 0.639865 2_2:+58013481 None:intergenic
GGAATGGAATCTTTGTCTGG+TGG 0.645080 2_2:+58013502 None:intergenic
CATCCAAACCAGCTTCAGCA+AGG 0.652544 2_2:+58013212 None:intergenic
GTGTGTTGGACCCACAGGCA+CGG 0.663649 2_2:-58011808 Msa0260460:CDS
AAGCACTCCAATCAACGTAA+CGG 0.670586 2_2:+58011867 None:intergenic
AGTAGCTTGAGGAGTCCAAG+TGG 0.684181 2_2:-58011839 Msa0260460:CDS
AGGCACGGTGTCTTTCTAAG+CGG 0.699780 2_2:-58011793 Msa0260460:CDS
AGGAGTCCAAGTGGATACGG+TGG 0.701403 2_2:-58011830 Msa0260460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATACATATCTATA+AGG + chr2_2:58013025-58013044 None:intergenic 10.0%
!! AATAAATATACATATCTATA+AGG + chr2_2:58013025-58013044 None:intergenic 10.0%
!!! TACTTATTTATTTTTGCAAT+AGG - chr2_2:58013266-58013285 Msa0260460:CDS 15.0%
!!! TACTTATTTATTTTTGCAAT+AGG - chr2_2:58013266-58013285 Msa0260460:CDS 15.0%
!!! TTTTTGTTTGATGTTTGAAA+GGG + chr2_2:58011620-58011639 None:intergenic 20.0%
!!! AATTTGAATTTGAAGTTTCA+AGG + chr2_2:58011705-58011724 None:intergenic 20.0%
!! AGAAAGAAATAAGTATTAAG+AGG - chr2_2:58012379-58012398 Msa0260460:intron 20.0%
!!! TATACTTGTAAAGTCAATTT+TGG + chr2_2:58012741-58012760 None:intergenic 20.0%
!!! ATTGTTTGTTTTTCATCTAA+AGG - chr2_2:58012774-58012793 Msa0260460:intron 20.0%
!! AATATACATATCTATAAGGA+AGG + chr2_2:58013021-58013040 None:intergenic 20.0%
!!! AAGAAAATTAATGTGCTTTT+TGG + chr2_2:58013056-58013075 None:intergenic 20.0%
!!! TTTTTGTTTGATGTTTGAAA+GGG + chr2_2:58011620-58011639 None:intergenic 20.0%
!!! AATTTGAATTTGAAGTTTCA+AGG + chr2_2:58011705-58011724 None:intergenic 20.0%
!! AGAAAGAAATAAGTATTAAG+AGG - chr2_2:58012379-58012398 Msa0260460:intron 20.0%
!!! TATACTTGTAAAGTCAATTT+TGG + chr2_2:58012741-58012760 None:intergenic 20.0%
!!! ATTGTTTGTTTTTCATCTAA+AGG - chr2_2:58012774-58012793 Msa0260460:intron 20.0%
!! AATATACATATCTATAAGGA+AGG + chr2_2:58013021-58013040 None:intergenic 20.0%
!!! AAGAAAATTAATGTGCTTTT+TGG + chr2_2:58013056-58013075 None:intergenic 20.0%
! AATATTCCAAAGTTACTTGT+TGG + chr2_2:58011546-58011565 None:intergenic 25.0%
!!! CTTTTTGTTTGATGTTTGAA+AGG + chr2_2:58011621-58011640 None:intergenic 25.0%
! CTTTCAAACATCAAACAAAA+AGG - chr2_2:58011619-58011638 Msa0260460:CDS 25.0%
!! TTTTTGAATTTGGATCATGA+TGG - chr2_2:58012027-58012046 Msa0260460:CDS 25.0%
!!! TACTTTAAGATAAGTGTCAA+TGG + chr2_2:58012211-58012230 None:intergenic 25.0%
!! TAATTCTTTCTAAAGATCTC+AGG - chr2_2:58012264-58012283 Msa0260460:intron 25.0%
! AAGAAATAAGTATTAAGAGG+AGG - chr2_2:58012382-58012401 Msa0260460:intron 25.0%
!!! TATCTAGATTTGGAATTTTG+TGG + chr2_2:58012821-58012840 None:intergenic 25.0%
! ACAAAATTCCAAATCTAGAT+AGG - chr2_2:58012820-58012839 Msa0260460:intron 25.0%
! ATTCAAGTAACATACCATTA+AGG - chr2_2:58013080-58013099 Msa0260460:intron 25.0%
! AATGGAGATAAAAAAACTGA+AGG - chr2_2:58013560-58013579 Msa0260460:CDS 25.0%
! AGAAGAAAAGTTTCTTCAAA+TGG - chr2_2:58013649-58013668 Msa0260460:CDS 25.0%
!!! CTTGCTTTTATTAAAAGCAT+CGG - chr2_2:58013678-58013697 Msa0260460:CDS 25.0%
! AATATTCCAAAGTTACTTGT+TGG + chr2_2:58011546-58011565 None:intergenic 25.0%
!!! CTTTTTGTTTGATGTTTGAA+AGG + chr2_2:58011621-58011640 None:intergenic 25.0%
! CTTTCAAACATCAAACAAAA+AGG - chr2_2:58011619-58011638 Msa0260460:CDS 25.0%
!! TTTTTGAATTTGGATCATGA+TGG - chr2_2:58012027-58012046 Msa0260460:CDS 25.0%
!!! TACTTTAAGATAAGTGTCAA+TGG + chr2_2:58012211-58012230 None:intergenic 25.0%
!! TAATTCTTTCTAAAGATCTC+AGG - chr2_2:58012264-58012283 Msa0260460:intron 25.0%
! AAGAAATAAGTATTAAGAGG+AGG - chr2_2:58012382-58012401 Msa0260460:intron 25.0%
!!! TATCTAGATTTGGAATTTTG+TGG + chr2_2:58012821-58012840 None:intergenic 25.0%
! ACAAAATTCCAAATCTAGAT+AGG - chr2_2:58012820-58012839 Msa0260460:intron 25.0%
! ATTCAAGTAACATACCATTA+AGG - chr2_2:58013080-58013099 Msa0260460:intron 25.0%
! AATGGAGATAAAAAAACTGA+AGG - chr2_2:58013560-58013579 Msa0260460:CDS 25.0%
! AGAAGAAAAGTTTCTTCAAA+TGG - chr2_2:58013649-58013668 Msa0260460:CDS 25.0%
!!! CTTGCTTTTATTAAAAGCAT+CGG - chr2_2:58013678-58013697 Msa0260460:CDS 25.0%
!! TAACTTTGGAATATTGTTGC+CGG - chr2_2:58011551-58011570 Msa0260460:CDS 30.0%
! AATTTGAAGTTTCAAGGTCA+GGG + chr2_2:58011699-58011718 None:intergenic 30.0%
TGAAATTCGATTCTCAAGAT+CGG + chr2_2:58011902-58011921 None:intergenic 30.0%
ATCTTGAGAATCGAATTTCA+TGG - chr2_2:58011902-58011921 Msa0260460:CDS 30.0%
!! TTGTTATTAGGTTGGTTAAG+AGG - chr2_2:58012004-58012023 Msa0260460:CDS 30.0%
! GGTTAAGAGGTTTTTGAATT+TGG - chr2_2:58012017-58012036 Msa0260460:CDS 30.0%
TTTGGTTAAAGTTGCTAAGT+TGG - chr2_2:58012068-58012087 Msa0260460:intron 30.0%
! CCACACAAGAAACATTTTAT+AGG + chr2_2:58012423-58012442 None:intergenic 30.0%
CCTATAAAATGTTTCTTGTG+TGG - chr2_2:58012420-58012439 Msa0260460:intron 30.0%
!! AAAGTCAATTTTGGTGAAGT+CGG + chr2_2:58012732-58012751 None:intergenic 30.0%
ATGATCCATTTCAGTAAAAC+AGG + chr2_2:58012936-58012955 None:intergenic 30.0%
CTAATATAGATGTCAAAGCT+TGG - chr2_2:58012990-58013009 Msa0260460:intron 30.0%
AAGTAACATACCATTAAGGT+TGG - chr2_2:58013084-58013103 Msa0260460:intron 30.0%
ATTATTGGATCAAGATCAGA+TGG + chr2_2:58013157-58013176 None:intergenic 30.0%
AAGAAAGAAAAAGTCTGTGT+AGG - chr2_2:58013310-58013329 Msa0260460:CDS 30.0%
ATGAAGCTGAAACTGAATTT+GGG - chr2_2:58013724-58013743 Msa0260460:CDS 30.0%
!! TAACTTTGGAATATTGTTGC+CGG - chr2_2:58011551-58011570 Msa0260460:CDS 30.0%
! AATTTGAAGTTTCAAGGTCA+GGG + chr2_2:58011699-58011718 None:intergenic 30.0%
TGAAATTCGATTCTCAAGAT+CGG + chr2_2:58011902-58011921 None:intergenic 30.0%
ATCTTGAGAATCGAATTTCA+TGG - chr2_2:58011902-58011921 Msa0260460:CDS 30.0%
!! TTGTTATTAGGTTGGTTAAG+AGG - chr2_2:58012004-58012023 Msa0260460:CDS 30.0%
! GGTTAAGAGGTTTTTGAATT+TGG - chr2_2:58012017-58012036 Msa0260460:CDS 30.0%
TTTGGTTAAAGTTGCTAAGT+TGG - chr2_2:58012068-58012087 Msa0260460:intron 30.0%
! CCACACAAGAAACATTTTAT+AGG + chr2_2:58012423-58012442 None:intergenic 30.0%
CCTATAAAATGTTTCTTGTG+TGG - chr2_2:58012420-58012439 Msa0260460:intron 30.0%
!! AAAGTCAATTTTGGTGAAGT+CGG + chr2_2:58012732-58012751 None:intergenic 30.0%
ATGATCCATTTCAGTAAAAC+AGG + chr2_2:58012936-58012955 None:intergenic 30.0%
CTAATATAGATGTCAAAGCT+TGG - chr2_2:58012990-58013009 Msa0260460:intron 30.0%
AAGTAACATACCATTAAGGT+TGG - chr2_2:58013084-58013103 Msa0260460:intron 30.0%
ATTATTGGATCAAGATCAGA+TGG + chr2_2:58013157-58013176 None:intergenic 30.0%
AAGAAAGAAAAAGTCTGTGT+AGG - chr2_2:58013310-58013329 Msa0260460:CDS 30.0%
ATGAAGCTGAAACTGAATTT+GGG - chr2_2:58013724-58013743 Msa0260460:CDS 30.0%
TCCAAACCAACAAGTAACTT+TGG - chr2_2:58011537-58011556 Msa0260460:CDS 35.0%
! TCCAAAGTTACTTGTTGGTT+TGG + chr2_2:58011541-58011560 None:intergenic 35.0%
TAATGAAGCAATCCATGTCA+AGG + chr2_2:58011594-58011613 None:intergenic 35.0%
!! GATGATGGAACCGATTAAAT+CGG + chr2_2:58011653-58011672 None:intergenic 35.0%
TCACTAACTATGCTTCCAAA+TGG - chr2_2:58011671-58011690 Msa0260460:CDS 35.0%
! GAATTTGAAGTTTCAAGGTC+AGG + chr2_2:58011700-58011719 None:intergenic 35.0%
CATGATGTTGTTACACTTTC+AGG + chr2_2:58011748-58011767 None:intergenic 35.0%
! CTGAAAGTGTAACAACATCA+TGG - chr2_2:58011746-58011765 Msa0260460:CDS 35.0%
CAACATCATGGATGAAGAAA+AGG - chr2_2:58011758-58011777 Msa0260460:CDS 35.0%
!!! CCATGTTAGCTGTTTTAAGA+AGG + chr2_2:58011855-58011874 None:intergenic 35.0%
CCTTCTTAAAACAGCTAACA+TGG - chr2_2:58011852-58011871 Msa0260460:CDS 35.0%
CTTCTTTCAGTCATACTTGT+GGG - chr2_2:58011962-58011981 Msa0260460:CDS 35.0%
AACAAGCTCAACATCCAAAA+GGG + chr2_2:58011989-58012008 None:intergenic 35.0%
TAACAAGCTCAACATCCAAA+AGG + chr2_2:58011990-58012009 None:intergenic 35.0%
!! TGGATGTTGAGCTTGTTATT+AGG - chr2_2:58011992-58012011 Msa0260460:CDS 35.0%
!! TGTTGAGCTTGTTATTAGGT+TGG - chr2_2:58011996-58012015 Msa0260460:CDS 35.0%
! GATCATGATGGAGTTAAAAC+TGG - chr2_2:58012039-58012058 Msa0260460:intron 35.0%
AATGTTTCTTGTGTGGTGAT+TGG - chr2_2:58012427-58012446 Msa0260460:intron 35.0%
ACTCTCTGATATACGTTTGT+TGG - chr2_2:58012463-58012482 Msa0260460:intron 35.0%
TGTGTGACTTTCTAACTAGA+AGG + chr2_2:58012492-58012511 None:intergenic 35.0%
ATTGTTTCATGTGTGTTCAC+CGG - chr2_2:58012604-58012623 Msa0260460:intron 35.0%
ACTCACATATATGCGTTTGT+AGG - chr2_2:58012633-58012652 Msa0260460:intron 35.0%
AATCAAGAGATATCGTTCGT+CGG - chr2_2:58012679-58012698 Msa0260460:intron 35.0%
!! AAGTCAATTTTGGTGAAGTC+GGG + chr2_2:58012731-58012750 None:intergenic 35.0%
TTCCAAATCTAGATAGGACA+TGG - chr2_2:58012826-58012845 Msa0260460:intron 35.0%
! TGTTGATTGCAACTAGCTAT+TGG + chr2_2:58012853-58012872 None:intergenic 35.0%
GCAATCAACATTTCTCTACA+TGG - chr2_2:58012863-58012882 Msa0260460:intron 35.0%
TGCATGCATCAGTATATATG+TGG + chr2_2:58012901-58012920 None:intergenic 35.0%
! ATGTGCCTGTTTTACTGAAA+TGG - chr2_2:58012928-58012947 Msa0260460:intron 35.0%
TAACATACCATTAAGGTTGG+AGG - chr2_2:58013087-58013106 Msa0260460:intron 35.0%
!! GATGGTCCATATTTTAAGCT+CGG + chr2_2:58013139-58013158 None:intergenic 35.0%
GTCAAGACATCGGTAATTAT+TGG + chr2_2:58013172-58013191 None:intergenic 35.0%
ATTCCATTCAGTCAAGACAT+CGG + chr2_2:58013182-58013201 None:intergenic 35.0%
AGATTTAGATTGCATGCTGT+TGG + chr2_2:58013206-58013225 None:intergenic 35.0%
GGAAATGAACACACAACAAA+TGG - chr2_2:58013542-58013561 Msa0260460:CDS 35.0%
!! TATTAAAAGCATCGGAGAGA+CGG - chr2_2:58013686-58013705 Msa0260460:CDS 35.0%
GATGAAGCTGAAACTGAATT+TGG - chr2_2:58013723-58013742 Msa0260460:CDS 35.0%
! AAACTGAATTTGGGTTTGGA+AGG - chr2_2:58013733-58013752 Msa0260460:CDS 35.0%
!!! GTACTAGTTTTCATGTCCAT+AGG + chr2_2:58013765-58013784 None:intergenic 35.0%
! AGAGATTTTCTCCACTTATG+AGG + chr2_2:58013807-58013826 None:intergenic 35.0%
TCCAAACCAACAAGTAACTT+TGG - chr2_2:58011537-58011556 Msa0260460:CDS 35.0%
! TCCAAAGTTACTTGTTGGTT+TGG + chr2_2:58011541-58011560 None:intergenic 35.0%
TAATGAAGCAATCCATGTCA+AGG + chr2_2:58011594-58011613 None:intergenic 35.0%
!! GATGATGGAACCGATTAAAT+CGG + chr2_2:58011653-58011672 None:intergenic 35.0%
TCACTAACTATGCTTCCAAA+TGG - chr2_2:58011671-58011690 Msa0260460:CDS 35.0%
! GAATTTGAAGTTTCAAGGTC+AGG + chr2_2:58011700-58011719 None:intergenic 35.0%
CATGATGTTGTTACACTTTC+AGG + chr2_2:58011748-58011767 None:intergenic 35.0%
! CTGAAAGTGTAACAACATCA+TGG - chr2_2:58011746-58011765 Msa0260460:CDS 35.0%
CAACATCATGGATGAAGAAA+AGG - chr2_2:58011758-58011777 Msa0260460:CDS 35.0%
!!! CCATGTTAGCTGTTTTAAGA+AGG + chr2_2:58011855-58011874 None:intergenic 35.0%
CCTTCTTAAAACAGCTAACA+TGG - chr2_2:58011852-58011871 Msa0260460:CDS 35.0%
CTTCTTTCAGTCATACTTGT+GGG - chr2_2:58011962-58011981 Msa0260460:CDS 35.0%
AACAAGCTCAACATCCAAAA+GGG + chr2_2:58011989-58012008 None:intergenic 35.0%
TAACAAGCTCAACATCCAAA+AGG + chr2_2:58011990-58012009 None:intergenic 35.0%
!! TGGATGTTGAGCTTGTTATT+AGG - chr2_2:58011992-58012011 Msa0260460:CDS 35.0%
!! TGTTGAGCTTGTTATTAGGT+TGG - chr2_2:58011996-58012015 Msa0260460:CDS 35.0%
! GATCATGATGGAGTTAAAAC+TGG - chr2_2:58012039-58012058 Msa0260460:intron 35.0%
AATGTTTCTTGTGTGGTGAT+TGG - chr2_2:58012427-58012446 Msa0260460:intron 35.0%
ACTCTCTGATATACGTTTGT+TGG - chr2_2:58012463-58012482 Msa0260460:intron 35.0%
TGTGTGACTTTCTAACTAGA+AGG + chr2_2:58012492-58012511 None:intergenic 35.0%
ATTGTTTCATGTGTGTTCAC+CGG - chr2_2:58012604-58012623 Msa0260460:intron 35.0%
ACTCACATATATGCGTTTGT+AGG - chr2_2:58012633-58012652 Msa0260460:intron 35.0%
AATCAAGAGATATCGTTCGT+CGG - chr2_2:58012679-58012698 Msa0260460:intron 35.0%
!! AAGTCAATTTTGGTGAAGTC+GGG + chr2_2:58012731-58012750 None:intergenic 35.0%
TTCCAAATCTAGATAGGACA+TGG - chr2_2:58012826-58012845 Msa0260460:intron 35.0%
! TGTTGATTGCAACTAGCTAT+TGG + chr2_2:58012853-58012872 None:intergenic 35.0%
GCAATCAACATTTCTCTACA+TGG - chr2_2:58012863-58012882 Msa0260460:intron 35.0%
TGCATGCATCAGTATATATG+TGG + chr2_2:58012901-58012920 None:intergenic 35.0%
! ATGTGCCTGTTTTACTGAAA+TGG - chr2_2:58012928-58012947 Msa0260460:intron 35.0%
TAACATACCATTAAGGTTGG+AGG - chr2_2:58013087-58013106 Msa0260460:intron 35.0%
!! GATGGTCCATATTTTAAGCT+CGG + chr2_2:58013139-58013158 None:intergenic 35.0%
GTCAAGACATCGGTAATTAT+TGG + chr2_2:58013172-58013191 None:intergenic 35.0%
ATTCCATTCAGTCAAGACAT+CGG + chr2_2:58013182-58013201 None:intergenic 35.0%
AGATTTAGATTGCATGCTGT+TGG + chr2_2:58013206-58013225 None:intergenic 35.0%
GGAAATGAACACACAACAAA+TGG - chr2_2:58013542-58013561 Msa0260460:CDS 35.0%
!! TATTAAAAGCATCGGAGAGA+CGG - chr2_2:58013686-58013705 Msa0260460:CDS 35.0%
GATGAAGCTGAAACTGAATT+TGG - chr2_2:58013723-58013742 Msa0260460:CDS 35.0%
! AAACTGAATTTGGGTTTGGA+AGG - chr2_2:58013733-58013752 Msa0260460:CDS 35.0%
!!! GTACTAGTTTTCATGTCCAT+AGG + chr2_2:58013765-58013784 None:intergenic 35.0%
! AGAGATTTTCTCCACTTATG+AGG + chr2_2:58013807-58013826 None:intergenic 35.0%
!! TGTTGGTTTGGACTTGTTTC+TGG + chr2_2:58011529-58011548 None:intergenic 40.0%
GGTGTTCGTTCCGATTTAAT+CGG - chr2_2:58011640-58011659 Msa0260460:CDS 40.0%
! GGAAGCATAGTTAGTGATGA+TGG + chr2_2:58011668-58011687 None:intergenic 40.0%
CATGGAATGGAATCTTTGTC+TGG + chr2_2:58011817-58011836 None:intergenic 40.0%
!!! TAGCTGTTTTAAGAAGGCGA+AGG + chr2_2:58011849-58011868 None:intergenic 40.0%
CCACAAGTATGACTGAAAGA+AGG + chr2_2:58011964-58011983 None:intergenic 40.0%
CCTTCTTTCAGTCATACTTG+TGG - chr2_2:58011961-58011980 Msa0260460:CDS 40.0%
!! AGTTAAAACTGGTGCTGCTT+TGG - chr2_2:58012050-58012069 Msa0260460:intron 40.0%
ATCTCAGGTTCAATTCTTCC+CGG - chr2_2:58012279-58012298 Msa0260460:intron 40.0%
TAGTCCACTGAAATTGACAC+CGG + chr2_2:58012301-58012320 None:intergenic 40.0%
!! TGGACTAGTTTGACGACTTA+AGG - chr2_2:58012314-58012333 Msa0260460:intron 40.0%
!! GGACTAGTTTGACGACTTAA+GGG - chr2_2:58012315-58012334 Msa0260460:intron 40.0%
TATATCAGAGAGTCTCATGC+TGG + chr2_2:58012456-58012475 None:intergenic 40.0%
ACCGTTAGATTGACGAAGAT+CGG - chr2_2:58012526-58012545 Msa0260460:intron 40.0%
TCCGATCTTCGTCAATCTAA+CGG + chr2_2:58012530-58012549 None:intergenic 40.0%
CATATATGTGAGTCTCATGC+CGG + chr2_2:58012626-58012645 None:intergenic 40.0%
ATCTCTTGATTGCGTGACTA+CGG + chr2_2:58012670-58012689 None:intergenic 40.0%
TTCGTCGGATTGACAAAGAT+CGG - chr2_2:58012694-58012713 Msa0260460:intron 40.0%
GTCCATGTCCTATCTAGATT+TGG + chr2_2:58012831-58012850 None:intergenic 40.0%
GCTCTACCGAGCTTAAAATA+TGG - chr2_2:58013130-58013149 Msa0260460:CDS 40.0%
TTACCGATGTCTTGACTGAA+TGG - chr2_2:58013176-58013195 Msa0260460:CDS 40.0%
!! TGTGTAGGTTGATTGATAGC+AGG - chr2_2:58013325-58013344 Msa0260460:CDS 40.0%
TTCATGCAGCTCAAAACGAA+CGG - chr2_2:58013370-58013389 Msa0260460:CDS 40.0%
ACTTGAATAACAGCTCTCAC+AGG + chr2_2:58013399-58013418 None:intergenic 40.0%
ACGGTTGAGTTTCGTTTGTT+CGG + chr2_2:58013430-58013449 None:intergenic 40.0%
AACTCAACCGTTACGTTGAT+TGG - chr2_2:58013439-58013458 Msa0260460:CDS 40.0%
AAGCACTCCAATCAACGTAA+CGG + chr2_2:58013449-58013468 None:intergenic 40.0%
AACTGAAGGAAGACGTTTAC+AGG - chr2_2:58013574-58013593 Msa0260460:CDS 40.0%
! GCTGAAACTGAATTTGGGTT+TGG - chr2_2:58013729-58013748 Msa0260460:CDS 40.0%
GGACATGAAAACTAGTACTG+TGG - chr2_2:58013767-58013786 Msa0260460:CDS 40.0%
CTAGTACTGTGGTCAAAAGT+AGG - chr2_2:58013778-58013797 Msa0260460:CDS 40.0%
AAAGTAGGACTCCTCATAAG+TGG - chr2_2:58013793-58013812 Msa0260460:CDS 40.0%
!! TGTTGGTTTGGACTTGTTTC+TGG + chr2_2:58011529-58011548 None:intergenic 40.0%
GGTGTTCGTTCCGATTTAAT+CGG - chr2_2:58011640-58011659 Msa0260460:CDS 40.0%
! GGAAGCATAGTTAGTGATGA+TGG + chr2_2:58011668-58011687 None:intergenic 40.0%
CATGGAATGGAATCTTTGTC+TGG + chr2_2:58011817-58011836 None:intergenic 40.0%
!!! TAGCTGTTTTAAGAAGGCGA+AGG + chr2_2:58011849-58011868 None:intergenic 40.0%
CCACAAGTATGACTGAAAGA+AGG + chr2_2:58011964-58011983 None:intergenic 40.0%
CCTTCTTTCAGTCATACTTG+TGG - chr2_2:58011961-58011980 Msa0260460:CDS 40.0%
!! AGTTAAAACTGGTGCTGCTT+TGG - chr2_2:58012050-58012069 Msa0260460:intron 40.0%
ATCTCAGGTTCAATTCTTCC+CGG - chr2_2:58012279-58012298 Msa0260460:intron 40.0%
TAGTCCACTGAAATTGACAC+CGG + chr2_2:58012301-58012320 None:intergenic 40.0%
!! TGGACTAGTTTGACGACTTA+AGG - chr2_2:58012314-58012333 Msa0260460:intron 40.0%
!! GGACTAGTTTGACGACTTAA+GGG - chr2_2:58012315-58012334 Msa0260460:intron 40.0%
TATATCAGAGAGTCTCATGC+TGG + chr2_2:58012456-58012475 None:intergenic 40.0%
ACCGTTAGATTGACGAAGAT+CGG - chr2_2:58012526-58012545 Msa0260460:intron 40.0%
TCCGATCTTCGTCAATCTAA+CGG + chr2_2:58012530-58012549 None:intergenic 40.0%
CATATATGTGAGTCTCATGC+CGG + chr2_2:58012626-58012645 None:intergenic 40.0%
ATCTCTTGATTGCGTGACTA+CGG + chr2_2:58012670-58012689 None:intergenic 40.0%
TTCGTCGGATTGACAAAGAT+CGG - chr2_2:58012694-58012713 Msa0260460:intron 40.0%
GTCCATGTCCTATCTAGATT+TGG + chr2_2:58012831-58012850 None:intergenic 40.0%
GCTCTACCGAGCTTAAAATA+TGG - chr2_2:58013130-58013149 Msa0260460:CDS 40.0%
TTACCGATGTCTTGACTGAA+TGG - chr2_2:58013176-58013195 Msa0260460:CDS 40.0%
!! TGTGTAGGTTGATTGATAGC+AGG - chr2_2:58013325-58013344 Msa0260460:CDS 40.0%
TTCATGCAGCTCAAAACGAA+CGG - chr2_2:58013370-58013389 Msa0260460:CDS 40.0%
ACTTGAATAACAGCTCTCAC+AGG + chr2_2:58013399-58013418 None:intergenic 40.0%
ACGGTTGAGTTTCGTTTGTT+CGG + chr2_2:58013430-58013449 None:intergenic 40.0%
AACTCAACCGTTACGTTGAT+TGG - chr2_2:58013439-58013458 Msa0260460:CDS 40.0%
AAGCACTCCAATCAACGTAA+CGG + chr2_2:58013449-58013468 None:intergenic 40.0%
AACTGAAGGAAGACGTTTAC+AGG - chr2_2:58013574-58013593 Msa0260460:CDS 40.0%
! GCTGAAACTGAATTTGGGTT+TGG - chr2_2:58013729-58013748 Msa0260460:CDS 40.0%
GGACATGAAAACTAGTACTG+TGG - chr2_2:58013767-58013786 Msa0260460:CDS 40.0%
CTAGTACTGTGGTCAAAAGT+AGG - chr2_2:58013778-58013797 Msa0260460:CDS 40.0%
AAAGTAGGACTCCTCATAAG+TGG - chr2_2:58013793-58013812 Msa0260460:CDS 40.0%
AGATGCATGCATCCTTGACA+TGG - chr2_2:58011579-58011598 Msa0260460:CDS 45.0%
! TGGTGGAAGAACACTGACTA+AGG + chr2_2:58011797-58011816 None:intergenic 45.0%
GGAATGGAATCTTTGTCTGG+TGG + chr2_2:58011814-58011833 None:intergenic 45.0%
AAGGAGGAAGTTGCATGGAA+TGG + chr2_2:58011830-58011849 None:intergenic 45.0%
!!! CTGTTTTAAGAAGGCGAAGG+AGG + chr2_2:58011846-58011865 None:intergenic 45.0%
! TCATACTTGTGGGACCCTTT+TGG - chr2_2:58011972-58011991 Msa0260460:CDS 45.0%
GATTGTTACCTTGCTGAAGC+TGG - chr2_2:58012093-58012112 Msa0260460:intron 45.0%
TTACCTTGCTGAAGCTGGTT+TGG - chr2_2:58012098-58012117 Msa0260460:intron 45.0%
!! TCTCAGTTTGTTGCACTTGC+TGG - chr2_2:58012138-58012157 Msa0260460:intron 45.0%
TCAGTAGCTCTTGCATGGTT+AGG + chr2_2:58012171-58012190 None:intergenic 45.0%
CATCATCAGTAGCTCTTGCA+TGG + chr2_2:58012176-58012195 None:intergenic 45.0%
CATGCAAGAGCTACTGATGA+TGG - chr2_2:58012174-58012193 Msa0260460:intron 45.0%
AGTCCACTGAAATTGACACC+GGG + chr2_2:58012300-58012319 None:intergenic 45.0%
TCTCTTGATTGCGTGACTAC+GGG + chr2_2:58012669-58012688 None:intergenic 45.0%
ACTAGCTCCTCCAACCTTAA+TGG + chr2_2:58013097-58013116 None:intergenic 45.0%
!! GTTTTGAGCTGCATGAAGTG+AGG + chr2_2:58013367-58013386 None:intergenic 45.0%
GTGCTTCTTTCAGTAGCTTG+AGG - chr2_2:58013463-58013482 Msa0260460:CDS 45.0%
TTGAGGAGTCCAAGTGGATA+CGG - chr2_2:58013480-58013499 Msa0260460:CDS 45.0%
CAATGTCATGCAAGCACAGA+TGG - chr2_2:58013611-58013630 Msa0260460:CDS 45.0%
GTTTGGAAGGCAAACACCTA+TGG - chr2_2:58013746-58013765 Msa0260460:CDS 45.0%
AGATGCATGCATCCTTGACA+TGG - chr2_2:58011579-58011598 Msa0260460:CDS 45.0%
! TGGTGGAAGAACACTGACTA+AGG + chr2_2:58011797-58011816 None:intergenic 45.0%
GGAATGGAATCTTTGTCTGG+TGG + chr2_2:58011814-58011833 None:intergenic 45.0%
AAGGAGGAAGTTGCATGGAA+TGG + chr2_2:58011830-58011849 None:intergenic 45.0%
!!! CTGTTTTAAGAAGGCGAAGG+AGG + chr2_2:58011846-58011865 None:intergenic 45.0%
! TCATACTTGTGGGACCCTTT+TGG - chr2_2:58011972-58011991 Msa0260460:CDS 45.0%
GATTGTTACCTTGCTGAAGC+TGG - chr2_2:58012093-58012112 Msa0260460:intron 45.0%
TTACCTTGCTGAAGCTGGTT+TGG - chr2_2:58012098-58012117 Msa0260460:intron 45.0%
!! TCTCAGTTTGTTGCACTTGC+TGG - chr2_2:58012138-58012157 Msa0260460:intron 45.0%
TCAGTAGCTCTTGCATGGTT+AGG + chr2_2:58012171-58012190 None:intergenic 45.0%
CATCATCAGTAGCTCTTGCA+TGG + chr2_2:58012176-58012195 None:intergenic 45.0%
CATGCAAGAGCTACTGATGA+TGG - chr2_2:58012174-58012193 Msa0260460:intron 45.0%
AGTCCACTGAAATTGACACC+GGG + chr2_2:58012300-58012319 None:intergenic 45.0%
TCTCTTGATTGCGTGACTAC+GGG + chr2_2:58012669-58012688 None:intergenic 45.0%
ACTAGCTCCTCCAACCTTAA+TGG + chr2_2:58013097-58013116 None:intergenic 45.0%
!! GTTTTGAGCTGCATGAAGTG+AGG + chr2_2:58013367-58013386 None:intergenic 45.0%
GTGCTTCTTTCAGTAGCTTG+AGG - chr2_2:58013463-58013482 Msa0260460:CDS 45.0%
TTGAGGAGTCCAAGTGGATA+CGG - chr2_2:58013480-58013499 Msa0260460:CDS 45.0%
CAATGTCATGCAAGCACAGA+TGG - chr2_2:58013611-58013630 Msa0260460:CDS 45.0%
GTTTGGAAGGCAAACACCTA+TGG - chr2_2:58013746-58013765 Msa0260460:CDS 45.0%
GGATGCATGCATCTTCGAAC+CGG + chr2_2:58011573-58011592 None:intergenic 50.0%
TTCAAGGTCAGGGAGCCATT+TGG + chr2_2:58011689-58011708 None:intergenic 50.0%
CATCCAAACCAGCTTCAGCA+AGG + chr2_2:58012104-58012123 None:intergenic 50.0%
! CTTCCCGGTGTCAATTTCAG+TGG - chr2_2:58012294-58012313 Msa0260460:intron 50.0%
CTTTCTTGCTTCGACACGCT+TGG + chr2_2:58013297-58013316 None:intergenic 50.0%
AGTAGCTTGAGGAGTCCAAG+TGG - chr2_2:58013474-58013493 Msa0260460:CDS 50.0%
AACACACCACCGTATCCACT+TGG + chr2_2:58013492-58013511 None:intergenic 50.0%
AAGTGGATACGGTGGTGTGT+TGG - chr2_2:58013491-58013510 Msa0260460:CDS 50.0%
TAGAAAGACACCGTGCCTGT+GGG + chr2_2:58013518-58013537 None:intergenic 50.0%
TTAGAAAGACACCGTGCCTG+TGG + chr2_2:58013519-58013538 None:intergenic 50.0%
AGGCACGGTGTCTTTCTAAG+CGG - chr2_2:58013520-58013539 Msa0260460:CDS 50.0%
GCAAGCACAGATGGACAAGA+TGG - chr2_2:58013620-58013639 Msa0260460:CDS 50.0%
GGATGCATGCATCTTCGAAC+CGG + chr2_2:58011573-58011592 None:intergenic 50.0%
TTCAAGGTCAGGGAGCCATT+TGG + chr2_2:58011689-58011708 None:intergenic 50.0%
CATCCAAACCAGCTTCAGCA+AGG + chr2_2:58012104-58012123 None:intergenic 50.0%
! CTTCCCGGTGTCAATTTCAG+TGG - chr2_2:58012294-58012313 Msa0260460:intron 50.0%
CTTTCTTGCTTCGACACGCT+TGG + chr2_2:58013297-58013316 None:intergenic 50.0%
AGTAGCTTGAGGAGTCCAAG+TGG - chr2_2:58013474-58013493 Msa0260460:CDS 50.0%
AACACACCACCGTATCCACT+TGG + chr2_2:58013492-58013511 None:intergenic 50.0%
AAGTGGATACGGTGGTGTGT+TGG - chr2_2:58013491-58013510 Msa0260460:CDS 50.0%
TAGAAAGACACCGTGCCTGT+GGG + chr2_2:58013518-58013537 None:intergenic 50.0%
TTAGAAAGACACCGTGCCTG+TGG + chr2_2:58013519-58013538 None:intergenic 50.0%
AGGCACGGTGTCTTTCTAAG+CGG - chr2_2:58013520-58013539 Msa0260460:CDS 50.0%
GCAAGCACAGATGGACAAGA+TGG - chr2_2:58013620-58013639 Msa0260460:CDS 50.0%
AGGCGAAGGAGGAAGTTGCA+TGG + chr2_2:58011835-58011854 None:intergenic 55.0%
GCTGCATGAAGTGAGGCTTC+TGG + chr2_2:58013360-58013379 None:intergenic 55.0%
AGGAGTCCAAGTGGATACGG+TGG - chr2_2:58013483-58013502 Msa0260460:CDS 55.0%
GGCACGGTGTCTTTCTAAGC+GGG - chr2_2:58013521-58013540 Msa0260460:CDS 55.0%
AGGCGAAGGAGGAAGTTGCA+TGG + chr2_2:58011835-58011854 None:intergenic 55.0%
GCTGCATGAAGTGAGGCTTC+TGG + chr2_2:58013360-58013379 None:intergenic 55.0%
AGGAGTCCAAGTGGATACGG+TGG - chr2_2:58013483-58013502 Msa0260460:CDS 55.0%
GGCACGGTGTCTTTCTAAGC+GGG - chr2_2:58013521-58013540 Msa0260460:CDS 55.0%
GTGTGTTGGACCCACAGGCA+CGG - chr2_2:58013505-58013524 Msa0260460:CDS 60.0%
GTGTGTTGGACCCACAGGCA+CGG - chr2_2:58013505-58013524 Msa0260460:CDS 60.0%
CGGTGGTGTGTTGGACCCAC+AGG - chr2_2:58013500-58013519 Msa0260460:CDS 65.0%
CGGTGGTGTGTTGGACCCAC+AGG - chr2_2:58013500-58013519 Msa0260460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 58011502 58013833 58011502 ID=Msa0260460;Name=Msa0260460
chr2_2 mRNA 58011502 58013833 58011502 ID=Msa0260460-mRNA-1;Parent=Msa0260460;Name=Msa0260460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|423
chr2_2 exon 58013108 58013833 58013108 ID=Msa0260460-mRNA-1:exon:17719;Parent=Msa0260460-mRNA-1
chr2_2 exon 58011502 58012047 58011502 ID=Msa0260460-mRNA-1:exon:17718;Parent=Msa0260460-mRNA-1
chr2_2 CDS 58013108 58013833 58013108 ID=Msa0260460-mRNA-1:cds;Parent=Msa0260460-mRNA-1
chr2_2 CDS 58011502 58012047 58011502 ID=Msa0260460-mRNA-1:cds;Parent=Msa0260460-mRNA-1
Gene Sequence

>Msa0260460

ATGAAGAAACAATGTTACAAAGAACCAGAAACAAGTCCAAACCAACAAGTAACTTTGGAATATTGTTGCCGGTTCGAAGATGCATGCATCCTTGACATGGATTGCTTCATTAAGACCCTTTCAAACATCAAACAAAAAGGTGTTCGTTCCGATTTAATCGGTTCCATCATCACTAACTATGCTTCCAAATGGCTCCCTGACCTTGAAACTTCAAATTCAAATTCAAATGCAAATGCGAATTCACCTGAAAGTGTAACAACATCATGGATGAAGAAAAGGTTCTTTGTTGAAACCTTAGTCAGTGTTCTTCCACCAGACAAAGATTCCATTCCATGCAACTTCCTCCTTCGCCTTCTTAAAACAGCTAACATGGTTCTTGTTGAGTCTACTTATCGAACCGATCTTGAGAATCGAATTTCATGGCAGTTAGATCAAGCTTCATTAAAAGAACTCATGATACCTTCTTTCAGTCATACTTGTGGGACCCTTTTGGATGTTGAGCTTGTTATTAGGTTGGTTAAGAGGTTTTTGAATTTGGATCATGATGGAGTTAAAACTGGTGCTGCTTTGGTTAAAGTTGCTAAGTTGGTTGATTGTTACCTTGCTGAAGCTGGTTTGGATGCTAATTTGAGTTTGTCTCAGTTTGTTGCACTTGCTGGTGCTCTTCCTAACCATGCAAGAGCTACTGATGATGGTTTATATAGAGCCATTGACACTTATCTTAAAGCACATCCAAGCGTGTCGAAGCAAGAAAGAAAAAGTCTGTGTAGGTTGATTGATAGCAGGAAACTCACACCAGAAGCCTCACTTCATGCAGCTCAAAACGAACGGTTGCCTGTGAGAGCTGTTATTCAAGTTCTCTTCTCCGAACAAACGAAACTCAACCGTTACGTTGATTGGAGTGCTTCTTTCAGTAGCTTGAGGAGTCCAAGTGGATACGGTGGTGTGTTGGACCCACAGGCACGGTGTCTTTCTAAGCGGGAAATGAACACACAACAAATGGAGATAAAAAAACTGAAGGAAGACGTTTACAGGCTGCAAAGTCAGTGCAATGTCATGCAAGCACAGATGGACAAGATGGCTGAGAAGAAGAAAAGTTTCTTCAAATGGAAGAAACTTGCTTTTATTAAAAGCATCGGAGAGACGGAGAATGTTGAACAAGATGAAGCTGAAACTGAATTTGGGTTTGGAAGGCAAACACCTATGGACATGAAAACTAGTACTGTGGTCAAAAGTAGGACTCCTCATAAGTGGAGAAAATCTCTGTCCTGA

Protein sequence

>Msa0260460

MKKQCYKEPETSPNQQVTLEYCCRFEDACILDMDCFIKTLSNIKQKGVRSDLIGSIITNYASKWLPDLETSNSNSNANANSPESVTTSWMKKRFFVETLVSVLPPDKDSIPCNFLLRLLKTANMVLVESTYRTDLENRISWQLDQASLKELMIPSFSHTCGTLLDVELVIRLVKRFLNLDHDGVKTGAALVKVAKLVDCYLAEAGLDANLSLSQFVALAGALPNHARATDDGLYRAIDTYLKAHPSVSKQERKSLCRLIDSRKLTPEASLHAAQNERLPVRAVIQVLFSEQTKLNRYVDWSASFSSLRSPSGYGGVLDPQARCLSKREMNTQQMEIKKLKEDVYRLQSQCNVMQAQMDKMAEKKKSFFKWKKLAFIKSIGETENVEQDEAETEFGFGRQTPMDMKTSTVVKSRTPHKWRKSLS*