Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0260460 | XP_003597825.1 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 858 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0260460 | sp|Q5KS50|NPH3_ORYSJ | 35.172 | 435 | 195 | 8 | 10 | 358 | 256 | 689 | 7.08e-72 | 243 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0260460 | G7IMG1 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 858 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0225870 | Msa0260460 | 0.931048 | 6.711814e-94 | -8.615850e-47 |
Msa0260460 | Msa0341180 | 0.898611 | 4.476489e-77 | -8.615850e-47 |
Msa0260460 | Msa0779040 | 0.804294 | 2.314329e-49 | -8.615850e-47 |
Msa0260460 | Msa0816440 | 0.810969 | 8.847941e-51 | -8.615850e-47 |
Msa0260460 | Msa0877410 | 0.805309 | 1.420892e-49 | -8.615850e-47 |
Msa0260460 | Msa1397450 | 0.918488 | 1.465213e-86 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0260460 | MtrunA17_Chr2g0332281 | 97.400 | 423 | 11 | 0 | 1 | 423 | 1 | 423 | 0.0 | 858 |
Msa0260460 | MtrunA17_Chr4g0003891 | 71.393 | 402 | 98 | 6 | 23 | 409 | 45 | 444 | 0.0 | 566 |
Msa0260460 | MtrunA17_Chr2g0279481 | 34.100 | 478 | 240 | 8 | 10 | 423 | 219 | 685 | 4.11e-80 | 260 |
Msa0260460 | MtrunA17_Chr4g0050021 | 37.011 | 435 | 214 | 9 | 7 | 384 | 215 | 646 | 9.73e-80 | 259 |
Msa0260460 | MtrunA17_Chr4g0010091 | 39.118 | 363 | 194 | 6 | 25 | 364 | 212 | 570 | 7.70e-69 | 229 |
Msa0260460 | MtrunA17_Chr5g0412591 | 40.000 | 310 | 141 | 5 | 26 | 293 | 183 | 489 | 7.71e-65 | 218 |
Msa0260460 | MtrunA17_Chr8g0382231 | 37.919 | 298 | 156 | 5 | 25 | 294 | 216 | 512 | 2.98e-63 | 214 |
Msa0260460 | MtrunA17_Chr2g0285511 | 33.505 | 388 | 230 | 6 | 25 | 392 | 215 | 594 | 3.67e-63 | 214 |
Msa0260460 | MtrunA17_Chr7g0268781 | 34.965 | 429 | 218 | 12 | 30 | 420 | 219 | 624 | 5.03e-63 | 214 |
Msa0260460 | MtrunA17_Chr7g0245201 | 37.731 | 379 | 210 | 9 | 25 | 384 | 237 | 608 | 2.76e-62 | 212 |
Msa0260460 | MtrunA17_Chr2g0303541 | 35.279 | 394 | 205 | 9 | 25 | 378 | 216 | 599 | 1.23e-61 | 210 |
Msa0260460 | MtrunA17_Chr1g0195911 | 34.223 | 412 | 217 | 12 | 30 | 399 | 216 | 615 | 4.89e-61 | 208 |
Msa0260460 | MtrunA17_Chr1g0207461 | 35.294 | 425 | 208 | 14 | 26 | 407 | 215 | 615 | 4.45e-59 | 203 |
Msa0260460 | MtrunA17_Chr1g0150191 | 40.909 | 286 | 137 | 7 | 26 | 292 | 215 | 487 | 1.60e-56 | 196 |
Msa0260460 | MtrunA17_Chr1g0181181 | 32.877 | 365 | 196 | 9 | 25 | 356 | 191 | 539 | 2.12e-56 | 195 |
Msa0260460 | MtrunA17_Chr1g0199631 | 32.105 | 380 | 218 | 7 | 25 | 380 | 177 | 540 | 7.87e-56 | 193 |
Msa0260460 | MtrunA17_Chr8g0374011 | 39.865 | 296 | 152 | 4 | 25 | 298 | 228 | 519 | 3.12e-55 | 193 |
Msa0260460 | MtrunA17_Chr5g0401341 | 40.989 | 283 | 139 | 5 | 26 | 293 | 214 | 483 | 6.41e-55 | 192 |
Msa0260460 | MtrunA17_Chr5g0401451 | 36.036 | 333 | 186 | 6 | 26 | 340 | 221 | 544 | 3.96e-54 | 190 |
Msa0260460 | MtrunA17_Chr4g0053841 | 36.729 | 373 | 195 | 10 | 26 | 368 | 197 | 558 | 1.44e-53 | 188 |
Msa0260460 | MtrunA17_Chr4g0076521 | 36.364 | 297 | 176 | 4 | 6 | 293 | 183 | 475 | 5.18e-51 | 181 |
Msa0260460 | MtrunA17_Chr3g0108331 | 31.566 | 396 | 231 | 9 | 26 | 404 | 185 | 557 | 1.53e-50 | 179 |
Msa0260460 | MtrunA17_Chr2g0320691 | 34.615 | 286 | 170 | 3 | 25 | 294 | 213 | 497 | 1.97e-47 | 172 |
Msa0260460 | MtrunA17_Chr1g0191711 | 28.488 | 344 | 214 | 7 | 13 | 349 | 210 | 528 | 6.89e-47 | 169 |
Msa0260460 | MtrunA17_Chr8g0367891 | 35.314 | 303 | 142 | 6 | 26 | 293 | 201 | 484 | 2.97e-46 | 168 |
Msa0260460 | MtrunA17_Chr2g0290741 | 35.612 | 278 | 154 | 5 | 26 | 293 | 203 | 465 | 5.32e-40 | 150 |
Msa0260460 | MtrunA17_Chr5g0432861 | 30.070 | 286 | 183 | 2 | 26 | 294 | 186 | 471 | 1.01e-39 | 149 |
Msa0260460 | MtrunA17_Chr4g0023801 | 33.333 | 291 | 161 | 6 | 106 | 372 | 257 | 538 | 3.89e-35 | 136 |
Msa0260460 | MtrunA17_Chr4g0037661 | 36.082 | 194 | 122 | 1 | 101 | 294 | 276 | 467 | 1.25e-31 | 126 |
Msa0260460 | MtrunA17_Chr1g0163311 | 35.000 | 180 | 112 | 2 | 112 | 291 | 283 | 457 | 7.84e-29 | 118 |
Msa0260460 | MtrunA17_Chr2g0280541 | 27.799 | 259 | 170 | 6 | 37 | 294 | 131 | 373 | 3.65e-19 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0260460 | AT3G15570.1 | 58.901 | 455 | 152 | 8 | 1 | 423 | 1 | 452 | 1.14e-180 | 511 |
Msa0260460 | AT1G52770.1 | 58.182 | 440 | 155 | 9 | 12 | 423 | 16 | 454 | 3.09e-171 | 487 |
Msa0260460 | AT5G03250.2 | 36.340 | 377 | 197 | 9 | 25 | 377 | 108 | 465 | 4.54e-65 | 216 |
Msa0260460 | AT5G64330.1 | 38.235 | 340 | 149 | 6 | 92 | 374 | 373 | 708 | 5.47e-65 | 221 |
Msa0260460 | AT5G03250.1 | 36.340 | 377 | 197 | 9 | 25 | 377 | 220 | 577 | 4.41e-64 | 216 |
Msa0260460 | AT5G64330.3 | 45.957 | 235 | 96 | 2 | 92 | 295 | 314 | 548 | 6.41e-61 | 208 |
Msa0260460 | AT5G64330.2 | 45.957 | 235 | 96 | 2 | 92 | 295 | 373 | 607 | 1.95e-60 | 208 |
Msa0260460 | AT1G30440.1 | 34.121 | 381 | 208 | 7 | 25 | 366 | 217 | 593 | 5.64e-60 | 207 |
Msa0260460 | AT5G13600.1 | 34.626 | 361 | 209 | 7 | 25 | 368 | 211 | 561 | 2.31e-59 | 204 |
Msa0260460 | AT5G48800.1 | 35.696 | 381 | 196 | 8 | 25 | 376 | 222 | 582 | 7.34e-58 | 200 |
Msa0260460 | AT1G03010.2 | 37.500 | 360 | 169 | 11 | 29 | 340 | 185 | 536 | 1.14e-57 | 199 |
Msa0260460 | AT3G08660.3 | 33.989 | 356 | 188 | 6 | 26 | 357 | 140 | 472 | 1.14e-57 | 197 |
Msa0260460 | AT2G47860.5 | 34.615 | 390 | 194 | 9 | 30 | 374 | 96 | 469 | 1.87e-57 | 197 |
Msa0260460 | AT2G47860.2 | 34.615 | 390 | 194 | 9 | 30 | 374 | 96 | 469 | 1.87e-57 | 197 |
Msa0260460 | AT5G66560.4 | 41.275 | 298 | 156 | 5 | 25 | 311 | 218 | 507 | 2.11e-57 | 199 |
Msa0260460 | AT1G03010.1 | 37.500 | 360 | 169 | 11 | 29 | 340 | 212 | 563 | 2.43e-57 | 199 |
Msa0260460 | AT5G66560.3 | 41.275 | 298 | 156 | 5 | 25 | 311 | 228 | 517 | 2.63e-57 | 199 |
Msa0260460 | AT1G03010.3 | 37.604 | 359 | 168 | 11 | 30 | 340 | 212 | 562 | 2.85e-57 | 199 |
Msa0260460 | AT3G08660.1 | 33.989 | 356 | 188 | 6 | 26 | 357 | 200 | 532 | 3.39e-57 | 197 |
Msa0260460 | AT5G66560.1 | 41.275 | 298 | 156 | 5 | 25 | 311 | 257 | 546 | 4.13e-57 | 199 |
Msa0260460 | AT2G47860.1 | 34.615 | 390 | 194 | 9 | 30 | 374 | 214 | 587 | 1.63e-56 | 197 |
Msa0260460 | AT2G47860.3 | 34.615 | 390 | 194 | 9 | 30 | 374 | 237 | 610 | 2.16e-56 | 197 |
Msa0260460 | AT5G67385.4 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 3.75e-56 | 194 |
Msa0260460 | AT5G67385.5 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 3.75e-56 | 194 |
Msa0260460 | AT5G67385.2 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 3.75e-56 | 194 |
Msa0260460 | AT5G67385.3 | 39.068 | 279 | 152 | 5 | 26 | 294 | 160 | 430 | 3.75e-56 | 194 |
Msa0260460 | AT5G67385.1 | 39.068 | 279 | 152 | 5 | 26 | 294 | 205 | 475 | 6.90e-56 | 194 |
Msa0260460 | AT2G30520.2 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 1.36e-55 | 192 |
Msa0260460 | AT2G30520.3 | 35.905 | 337 | 205 | 3 | 26 | 351 | 143 | 479 | 1.36e-55 | 192 |
Msa0260460 | AT2G30520.1 | 35.905 | 337 | 205 | 3 | 26 | 351 | 191 | 527 | 2.73e-55 | 192 |
Msa0260460 | AT3G26490.1 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.62e-53 | 188 |
Msa0260460 | AT3G26490.3 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.62e-53 | 188 |
Msa0260460 | AT3G26490.4 | 37.171 | 304 | 137 | 5 | 26 | 293 | 222 | 507 | 1.62e-53 | 188 |
Msa0260460 | AT5G10250.2 | 32.533 | 375 | 219 | 7 | 23 | 370 | 212 | 579 | 4.69e-53 | 187 |
Msa0260460 | AT4G31820.2 | 39.223 | 283 | 133 | 7 | 26 | 295 | 161 | 417 | 3.98e-52 | 182 |
Msa0260460 | AT4G31820.1 | 39.085 | 284 | 134 | 7 | 26 | 296 | 214 | 471 | 1.10e-51 | 182 |
Msa0260460 | AT5G10250.1 | 32.329 | 365 | 218 | 7 | 23 | 370 | 212 | 564 | 1.27e-51 | 183 |
Msa0260460 | AT2G14820.2 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.31e-50 | 181 |
Msa0260460 | AT2G14820.1 | 33.607 | 366 | 195 | 7 | 26 | 359 | 211 | 560 | 1.31e-50 | 181 |
Msa0260460 | AT1G67900.5 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT1G67900.1 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT1G67900.3 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT1G67900.6 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT1G67900.2 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT1G67900.4 | 36.928 | 306 | 155 | 4 | 26 | 293 | 204 | 509 | 3.60e-50 | 179 |
Msa0260460 | AT3G08570.1 | 32.044 | 362 | 208 | 8 | 25 | 359 | 213 | 563 | 2.13e-48 | 174 |
Msa0260460 | AT4G37590.1 | 37.868 | 272 | 145 | 5 | 26 | 295 | 218 | 467 | 1.47e-47 | 171 |
Msa0260460 | AT5G47800.3 | 34.228 | 298 | 182 | 4 | 4 | 291 | 181 | 474 | 2.51e-47 | 171 |
Msa0260460 | AT5G47800.1 | 34.228 | 298 | 182 | 4 | 4 | 291 | 181 | 474 | 2.51e-47 | 171 |
Msa0260460 | AT5G47800.4 | 34.228 | 298 | 182 | 4 | 4 | 291 | 181 | 474 | 2.51e-47 | 171 |
Msa0260460 | AT3G44820.1 | 30.831 | 373 | 217 | 7 | 25 | 359 | 214 | 583 | 8.04e-47 | 171 |
Msa0260460 | AT5G47800.2 | 34.228 | 298 | 182 | 4 | 4 | 291 | 294 | 587 | 1.23e-46 | 170 |
Msa0260460 | AT3G50840.2 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 2.49e-46 | 167 |
Msa0260460 | AT3G50840.3 | 33.333 | 357 | 226 | 5 | 25 | 381 | 161 | 505 | 2.49e-46 | 167 |
Msa0260460 | AT3G50840.1 | 33.333 | 357 | 226 | 5 | 25 | 381 | 197 | 541 | 5.30e-46 | 167 |
Msa0260460 | AT2G23050.2 | 36.900 | 271 | 141 | 6 | 26 | 295 | 95 | 336 | 1.10e-45 | 162 |
Msa0260460 | AT2G23050.1 | 36.900 | 271 | 141 | 6 | 26 | 295 | 211 | 452 | 6.36e-45 | 162 |
Msa0260460 | AT5G67440.2 | 36.823 | 277 | 157 | 5 | 26 | 293 | 172 | 439 | 1.75e-44 | 162 |
Msa0260460 | AT5G67440.3 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 3.65e-44 | 162 |
Msa0260460 | AT5G67440.1 | 36.823 | 277 | 157 | 5 | 26 | 293 | 209 | 476 | 3.65e-44 | 162 |
Msa0260460 | AT3G49970.1 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 6.53e-38 | 144 |
Msa0260460 | AT3G49970.2 | 33.203 | 256 | 154 | 6 | 26 | 278 | 153 | 394 | 6.53e-38 | 144 |
Msa0260460 | AT2G47860.6 | 37.398 | 246 | 105 | 6 | 30 | 242 | 237 | 466 | 7.27e-35 | 135 |
Msa0260460 | AT2G47860.4 | 37.398 | 246 | 105 | 6 | 30 | 242 | 214 | 443 | 8.17e-35 | 134 |
Msa0260460 | AT5G66560.2 | 37.991 | 229 | 125 | 4 | 25 | 242 | 257 | 479 | 1.96e-33 | 131 |
Msa0260460 | AT3G26490.2 | 33.858 | 254 | 114 | 5 | 26 | 243 | 222 | 457 | 4.93e-33 | 130 |
Msa0260460 | AT3G08660.2 | 31.950 | 241 | 131 | 4 | 26 | 250 | 200 | 423 | 6.44e-30 | 120 |
Msa0260460 | AT3G19850.1 | 34.896 | 192 | 124 | 1 | 101 | 291 | 272 | 463 | 3.18e-29 | 120 |
Msa0260460 | AT3G03510.1 | 33.468 | 248 | 143 | 6 | 51 | 294 | 133 | 362 | 3.98e-29 | 119 |
Msa0260460 | AT3G22104.4 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.80e-27 | 113 |
Msa0260460 | AT3G22104.2 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.80e-27 | 113 |
Msa0260460 | AT3G22104.3 | 35.979 | 189 | 115 | 3 | 91 | 278 | 162 | 345 | 2.80e-27 | 113 |
Msa0260460 | AT3G22104.1 | 35.567 | 194 | 119 | 3 | 86 | 278 | 232 | 420 | 3.73e-27 | 113 |
Msa0260460 | AT1G50280.2 | 32.275 | 189 | 126 | 1 | 101 | 287 | 239 | 427 | 3.53e-25 | 107 |
Msa0260460 | AT1G50280.1 | 32.275 | 189 | 126 | 1 | 101 | 287 | 272 | 460 | 3.73e-25 | 108 |
Msa0260460 | AT5G17580.2 | 30.233 | 258 | 158 | 4 | 43 | 294 | 217 | 458 | 3.41e-23 | 102 |
Msa0260460 | AT5G17580.1 | 30.233 | 258 | 158 | 4 | 43 | 294 | 202 | 443 | 3.46e-23 | 102 |
Msa0260460 | AT5G48130.1 | 32.374 | 139 | 92 | 2 | 191 | 328 | 367 | 504 | 1.66e-18 | 88.2 |
Find 82 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTGGTTTGGACTTGTTTC+TGG | 0.094629 | 2_2:+58013787 | None:intergenic |
CATGATGTTGTTACACTTTC+AGG | 0.101878 | 2_2:+58013568 | None:intergenic |
GATGAAGCTGAAACTGAATT+TGG | 0.156976 | 2_2:-58011590 | Msa0260460:CDS |
TCTCAGTTTGTTGCACTTGC+TGG | 0.262022 | 2_2:-58013175 | Msa0260460:CDS |
TCATACTTGTGGGACCCTTT+TGG | 0.268326 | 2_2:-58013341 | Msa0260460:CDS |
AACTCAACCGTTACGTTGAT+TGG | 0.275986 | 2_2:-58011874 | Msa0260460:CDS |
AACTGAAGGAAGACGTTTAC+AGG | 0.316073 | 2_2:-58011739 | Msa0260460:CDS |
TTACCTTGCTGAAGCTGGTT+TGG | 0.320602 | 2_2:-58013215 | Msa0260460:CDS |
TCCAAAGTTACTTGTTGGTT+TGG | 0.335510 | 2_2:+58013775 | None:intergenic |
CTTTCAAACATCAAACAAAA+AGG | 0.338570 | 2_2:-58013694 | Msa0260460:CDS |
TGGATGTTGAGCTTGTTATT+AGG | 0.354204 | 2_2:-58013321 | Msa0260460:CDS |
CTTTCTTGCTTCGACACGCT+TGG | 0.365749 | 2_2:+58012019 | None:intergenic |
ATGAAGCTGAAACTGAATTT+GGG | 0.381070 | 2_2:-58011589 | Msa0260460:CDS |
AGAAGAAAAGTTTCTTCAAA+TGG | 0.382710 | 2_2:-58011664 | Msa0260460:CDS |
TAACTTTGGAATATTGTTGC+CGG | 0.401723 | 2_2:-58013762 | Msa0260460:CDS |
AATTTGAATTTGAAGTTTCA+AGG | 0.404146 | 2_2:+58013611 | None:intergenic |
AATATTCCAAAGTTACTTGT+TGG | 0.406337 | 2_2:+58013770 | None:intergenic |
AGTTAAAACTGGTGCTGCTT+TGG | 0.406920 | 2_2:-58013263 | Msa0260460:CDS |
GGTGTTCGTTCCGATTTAAT+CGG | 0.410626 | 2_2:-58013673 | Msa0260460:CDS |
GCTGAAACTGAATTTGGGTT+TGG | 0.417674 | 2_2:-58011584 | Msa0260460:CDS |
TTTGGTTAAAGTTGCTAAGT+TGG | 0.421971 | 2_2:-58013245 | Msa0260460:CDS |
GGAAATGAACACACAACAAA+TGG | 0.426272 | 2_2:-58011771 | Msa0260460:CDS |
TTGTTATTAGGTTGGTTAAG+AGG | 0.429280 | 2_2:-58013309 | Msa0260460:CDS |
GAATTTGAAGTTTCAAGGTC+AGG | 0.429853 | 2_2:+58013616 | None:intergenic |
CATGGAATGGAATCTTTGTC+TGG | 0.430911 | 2_2:+58013499 | None:intergenic |
GGAAGCATAGTTAGTGATGA+TGG | 0.435073 | 2_2:+58013648 | None:intergenic |
ACGGTTGAGTTTCGTTTGTT+CGG | 0.438226 | 2_2:+58011886 | None:intergenic |
GATCATGATGGAGTTAAAAC+TGG | 0.446409 | 2_2:-58013274 | Msa0260460:CDS |
TCCAAACCAACAAGTAACTT+TGG | 0.448402 | 2_2:-58013776 | Msa0260460:CDS |
CAACATCATGGATGAAGAAA+AGG | 0.449234 | 2_2:-58013555 | Msa0260460:CDS |
GCTGCATGAAGTGAGGCTTC+TGG | 0.449394 | 2_2:+58011956 | None:intergenic |
ATCTTGAGAATCGAATTTCA+TGG | 0.451747 | 2_2:-58013411 | Msa0260460:CDS |
GATTGTTACCTTGCTGAAGC+TGG | 0.451910 | 2_2:-58013220 | Msa0260460:CDS |
CTTCTTTCAGTCATACTTGT+GGG | 0.454989 | 2_2:-58013351 | Msa0260460:CDS |
TCAGTAGCTCTTGCATGGTT+AGG | 0.455773 | 2_2:+58013145 | None:intergenic |
TTCAAGGTCAGGGAGCCATT+TGG | 0.459356 | 2_2:+58013627 | None:intergenic |
TAACAAGCTCAACATCCAAA+AGG | 0.463547 | 2_2:+58013326 | None:intergenic |
TGTTGAGCTTGTTATTAGGT+TGG | 0.469392 | 2_2:-58013317 | Msa0260460:CDS |
GATGATGGAACCGATTAAAT+CGG | 0.471736 | 2_2:+58013663 | None:intergenic |
GGATGCATGCATCTTCGAAC+CGG | 0.476249 | 2_2:+58013743 | None:intergenic |
CCTTCTTAAAACAGCTAACA+TGG | 0.480139 | 2_2:-58013461 | Msa0260460:CDS |
GTGCTTCTTTCAGTAGCTTG+AGG | 0.496152 | 2_2:-58011850 | Msa0260460:CDS |
CAATGTCATGCAAGCACAGA+TGG | 0.500225 | 2_2:-58011702 | Msa0260460:CDS |
GTTTGGAAGGCAAACACCTA+TGG | 0.502755 | 2_2:-58011567 | Msa0260460:CDS |
CTAGTACTGTGGTCAAAAGT+AGG | 0.505830 | 2_2:-58011535 | Msa0260460:CDS |
AACAAGCTCAACATCCAAAA+GGG | 0.506792 | 2_2:+58013327 | None:intergenic |
AATTTGAAGTTTCAAGGTCA+GGG | 0.510124 | 2_2:+58013617 | None:intergenic |
CATGCAAGAGCTACTGATGA+TGG | 0.510855 | 2_2:-58013139 | Msa0260460:CDS |
AAACTGAATTTGGGTTTGGA+AGG | 0.516582 | 2_2:-58011580 | Msa0260460:CDS |
TTGAGGAGTCCAAGTGGATA+CGG | 0.521600 | 2_2:-58011833 | Msa0260460:CDS |
AACACACCACCGTATCCACT+TGG | 0.522164 | 2_2:+58011824 | None:intergenic |
TGGTGGAAGAACACTGACTA+AGG | 0.524858 | 2_2:+58013519 | None:intergenic |
AAAGTAGGACTCCTCATAAG+TGG | 0.528795 | 2_2:-58011520 | Msa0260460:CDS |
TACTTTAAGATAAGTGTCAA+TGG | 0.534706 | 2_2:+58013105 | None:intergenic |
AAGGAGGAAGTTGCATGGAA+TGG | 0.540539 | 2_2:+58013486 | None:intergenic |
GGCACGGTGTCTTTCTAAGC+GGG | 0.543720 | 2_2:-58011792 | Msa0260460:CDS |
CTGAAAGTGTAACAACATCA+TGG | 0.545813 | 2_2:-58013567 | Msa0260460:CDS |
CGGTGGTGTGTTGGACCCAC+AGG | 0.552148 | 2_2:-58011813 | Msa0260460:CDS |
TATTAAAAGCATCGGAGAGA+CGG | 0.553022 | 2_2:-58011627 | Msa0260460:CDS |
TCACTAACTATGCTTCCAAA+TGG | 0.554897 | 2_2:-58013642 | Msa0260460:CDS |
AGATGCATGCATCCTTGACA+TGG | 0.556346 | 2_2:-58013734 | Msa0260460:CDS |
TGTGTAGGTTGATTGATAGC+AGG | 0.557107 | 2_2:-58011988 | Msa0260460:CDS |
GCAAGCACAGATGGACAAGA+TGG | 0.567785 | 2_2:-58011693 | Msa0260460:CDS |
TGAAATTCGATTCTCAAGAT+CGG | 0.569341 | 2_2:+58013414 | None:intergenic |
CCTTCTTTCAGTCATACTTG+TGG | 0.572660 | 2_2:-58013352 | Msa0260460:CDS |
CATCATCAGTAGCTCTTGCA+TGG | 0.574138 | 2_2:+58013140 | None:intergenic |
TTAGAAAGACACCGTGCCTG+TGG | 0.583694 | 2_2:+58011797 | None:intergenic |
GGACATGAAAACTAGTACTG+TGG | 0.589920 | 2_2:-58011546 | Msa0260460:CDS |
TAATGAAGCAATCCATGTCA+AGG | 0.592917 | 2_2:+58013722 | None:intergenic |
ACTTGAATAACAGCTCTCAC+AGG | 0.608705 | 2_2:+58011917 | None:intergenic |
CCACAAGTATGACTGAAAGA+AGG | 0.608970 | 2_2:+58013352 | None:intergenic |
AAGTGGATACGGTGGTGTGT+TGG | 0.620100 | 2_2:-58011822 | Msa0260460:CDS |
TAGAAAGACACCGTGCCTGT+GGG | 0.630868 | 2_2:+58011798 | None:intergenic |
TTCATGCAGCTCAAAACGAA+CGG | 0.639540 | 2_2:-58011943 | Msa0260460:CDS |
AGGCGAAGGAGGAAGTTGCA+TGG | 0.639865 | 2_2:+58013481 | None:intergenic |
GGAATGGAATCTTTGTCTGG+TGG | 0.645080 | 2_2:+58013502 | None:intergenic |
CATCCAAACCAGCTTCAGCA+AGG | 0.652544 | 2_2:+58013212 | None:intergenic |
GTGTGTTGGACCCACAGGCA+CGG | 0.663649 | 2_2:-58011808 | Msa0260460:CDS |
AAGCACTCCAATCAACGTAA+CGG | 0.670586 | 2_2:+58011867 | None:intergenic |
AGTAGCTTGAGGAGTCCAAG+TGG | 0.684181 | 2_2:-58011839 | Msa0260460:CDS |
AGGCACGGTGTCTTTCTAAG+CGG | 0.699780 | 2_2:-58011793 | Msa0260460:CDS |
AGGAGTCCAAGTGGATACGG+TGG | 0.701403 | 2_2:-58011830 | Msa0260460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAATATACATATCTATA+AGG | + | chr2_2:58013025-58013044 | None:intergenic | 10.0% |
!! | AATAAATATACATATCTATA+AGG | + | chr2_2:58013025-58013044 | None:intergenic | 10.0% |
!!! | TACTTATTTATTTTTGCAAT+AGG | - | chr2_2:58013266-58013285 | Msa0260460:CDS | 15.0% |
!!! | TACTTATTTATTTTTGCAAT+AGG | - | chr2_2:58013266-58013285 | Msa0260460:CDS | 15.0% |
!!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_2:58011620-58011639 | None:intergenic | 20.0% |
!!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_2:58011705-58011724 | None:intergenic | 20.0% |
!! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_2:58012379-58012398 | Msa0260460:intron | 20.0% |
!!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_2:58012741-58012760 | None:intergenic | 20.0% |
!!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_2:58012774-58012793 | Msa0260460:intron | 20.0% |
!! | AATATACATATCTATAAGGA+AGG | + | chr2_2:58013021-58013040 | None:intergenic | 20.0% |
!!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_2:58013056-58013075 | None:intergenic | 20.0% |
!!! | TTTTTGTTTGATGTTTGAAA+GGG | + | chr2_2:58011620-58011639 | None:intergenic | 20.0% |
!!! | AATTTGAATTTGAAGTTTCA+AGG | + | chr2_2:58011705-58011724 | None:intergenic | 20.0% |
!! | AGAAAGAAATAAGTATTAAG+AGG | - | chr2_2:58012379-58012398 | Msa0260460:intron | 20.0% |
!!! | TATACTTGTAAAGTCAATTT+TGG | + | chr2_2:58012741-58012760 | None:intergenic | 20.0% |
!!! | ATTGTTTGTTTTTCATCTAA+AGG | - | chr2_2:58012774-58012793 | Msa0260460:intron | 20.0% |
!! | AATATACATATCTATAAGGA+AGG | + | chr2_2:58013021-58013040 | None:intergenic | 20.0% |
!!! | AAGAAAATTAATGTGCTTTT+TGG | + | chr2_2:58013056-58013075 | None:intergenic | 20.0% |
! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_2:58011546-58011565 | None:intergenic | 25.0% |
!!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_2:58011621-58011640 | None:intergenic | 25.0% |
! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_2:58011619-58011638 | Msa0260460:CDS | 25.0% |
!! | TTTTTGAATTTGGATCATGA+TGG | - | chr2_2:58012027-58012046 | Msa0260460:CDS | 25.0% |
!!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_2:58012211-58012230 | None:intergenic | 25.0% |
!! | TAATTCTTTCTAAAGATCTC+AGG | - | chr2_2:58012264-58012283 | Msa0260460:intron | 25.0% |
! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_2:58012382-58012401 | Msa0260460:intron | 25.0% |
!!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_2:58012821-58012840 | None:intergenic | 25.0% |
! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_2:58012820-58012839 | Msa0260460:intron | 25.0% |
! | ATTCAAGTAACATACCATTA+AGG | - | chr2_2:58013080-58013099 | Msa0260460:intron | 25.0% |
! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_2:58013560-58013579 | Msa0260460:CDS | 25.0% |
! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_2:58013649-58013668 | Msa0260460:CDS | 25.0% |
!!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_2:58013678-58013697 | Msa0260460:CDS | 25.0% |
! | AATATTCCAAAGTTACTTGT+TGG | + | chr2_2:58011546-58011565 | None:intergenic | 25.0% |
!!! | CTTTTTGTTTGATGTTTGAA+AGG | + | chr2_2:58011621-58011640 | None:intergenic | 25.0% |
! | CTTTCAAACATCAAACAAAA+AGG | - | chr2_2:58011619-58011638 | Msa0260460:CDS | 25.0% |
!! | TTTTTGAATTTGGATCATGA+TGG | - | chr2_2:58012027-58012046 | Msa0260460:CDS | 25.0% |
!!! | TACTTTAAGATAAGTGTCAA+TGG | + | chr2_2:58012211-58012230 | None:intergenic | 25.0% |
!! | TAATTCTTTCTAAAGATCTC+AGG | - | chr2_2:58012264-58012283 | Msa0260460:intron | 25.0% |
! | AAGAAATAAGTATTAAGAGG+AGG | - | chr2_2:58012382-58012401 | Msa0260460:intron | 25.0% |
!!! | TATCTAGATTTGGAATTTTG+TGG | + | chr2_2:58012821-58012840 | None:intergenic | 25.0% |
! | ACAAAATTCCAAATCTAGAT+AGG | - | chr2_2:58012820-58012839 | Msa0260460:intron | 25.0% |
! | ATTCAAGTAACATACCATTA+AGG | - | chr2_2:58013080-58013099 | Msa0260460:intron | 25.0% |
! | AATGGAGATAAAAAAACTGA+AGG | - | chr2_2:58013560-58013579 | Msa0260460:CDS | 25.0% |
! | AGAAGAAAAGTTTCTTCAAA+TGG | - | chr2_2:58013649-58013668 | Msa0260460:CDS | 25.0% |
!!! | CTTGCTTTTATTAAAAGCAT+CGG | - | chr2_2:58013678-58013697 | Msa0260460:CDS | 25.0% |
!! | TAACTTTGGAATATTGTTGC+CGG | - | chr2_2:58011551-58011570 | Msa0260460:CDS | 30.0% |
! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_2:58011699-58011718 | None:intergenic | 30.0% |
TGAAATTCGATTCTCAAGAT+CGG | + | chr2_2:58011902-58011921 | None:intergenic | 30.0% | |
ATCTTGAGAATCGAATTTCA+TGG | - | chr2_2:58011902-58011921 | Msa0260460:CDS | 30.0% | |
!! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_2:58012004-58012023 | Msa0260460:CDS | 30.0% |
! | GGTTAAGAGGTTTTTGAATT+TGG | - | chr2_2:58012017-58012036 | Msa0260460:CDS | 30.0% |
TTTGGTTAAAGTTGCTAAGT+TGG | - | chr2_2:58012068-58012087 | Msa0260460:intron | 30.0% | |
! | CCACACAAGAAACATTTTAT+AGG | + | chr2_2:58012423-58012442 | None:intergenic | 30.0% |
CCTATAAAATGTTTCTTGTG+TGG | - | chr2_2:58012420-58012439 | Msa0260460:intron | 30.0% | |
!! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_2:58012732-58012751 | None:intergenic | 30.0% |
ATGATCCATTTCAGTAAAAC+AGG | + | chr2_2:58012936-58012955 | None:intergenic | 30.0% | |
CTAATATAGATGTCAAAGCT+TGG | - | chr2_2:58012990-58013009 | Msa0260460:intron | 30.0% | |
AAGTAACATACCATTAAGGT+TGG | - | chr2_2:58013084-58013103 | Msa0260460:intron | 30.0% | |
ATTATTGGATCAAGATCAGA+TGG | + | chr2_2:58013157-58013176 | None:intergenic | 30.0% | |
AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_2:58013310-58013329 | Msa0260460:CDS | 30.0% | |
ATGAAGCTGAAACTGAATTT+GGG | - | chr2_2:58013724-58013743 | Msa0260460:CDS | 30.0% | |
!! | TAACTTTGGAATATTGTTGC+CGG | - | chr2_2:58011551-58011570 | Msa0260460:CDS | 30.0% |
! | AATTTGAAGTTTCAAGGTCA+GGG | + | chr2_2:58011699-58011718 | None:intergenic | 30.0% |
TGAAATTCGATTCTCAAGAT+CGG | + | chr2_2:58011902-58011921 | None:intergenic | 30.0% | |
ATCTTGAGAATCGAATTTCA+TGG | - | chr2_2:58011902-58011921 | Msa0260460:CDS | 30.0% | |
!! | TTGTTATTAGGTTGGTTAAG+AGG | - | chr2_2:58012004-58012023 | Msa0260460:CDS | 30.0% |
! | GGTTAAGAGGTTTTTGAATT+TGG | - | chr2_2:58012017-58012036 | Msa0260460:CDS | 30.0% |
TTTGGTTAAAGTTGCTAAGT+TGG | - | chr2_2:58012068-58012087 | Msa0260460:intron | 30.0% | |
! | CCACACAAGAAACATTTTAT+AGG | + | chr2_2:58012423-58012442 | None:intergenic | 30.0% |
CCTATAAAATGTTTCTTGTG+TGG | - | chr2_2:58012420-58012439 | Msa0260460:intron | 30.0% | |
!! | AAAGTCAATTTTGGTGAAGT+CGG | + | chr2_2:58012732-58012751 | None:intergenic | 30.0% |
ATGATCCATTTCAGTAAAAC+AGG | + | chr2_2:58012936-58012955 | None:intergenic | 30.0% | |
CTAATATAGATGTCAAAGCT+TGG | - | chr2_2:58012990-58013009 | Msa0260460:intron | 30.0% | |
AAGTAACATACCATTAAGGT+TGG | - | chr2_2:58013084-58013103 | Msa0260460:intron | 30.0% | |
ATTATTGGATCAAGATCAGA+TGG | + | chr2_2:58013157-58013176 | None:intergenic | 30.0% | |
AAGAAAGAAAAAGTCTGTGT+AGG | - | chr2_2:58013310-58013329 | Msa0260460:CDS | 30.0% | |
ATGAAGCTGAAACTGAATTT+GGG | - | chr2_2:58013724-58013743 | Msa0260460:CDS | 30.0% | |
TCCAAACCAACAAGTAACTT+TGG | - | chr2_2:58011537-58011556 | Msa0260460:CDS | 35.0% | |
! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_2:58011541-58011560 | None:intergenic | 35.0% |
TAATGAAGCAATCCATGTCA+AGG | + | chr2_2:58011594-58011613 | None:intergenic | 35.0% | |
!! | GATGATGGAACCGATTAAAT+CGG | + | chr2_2:58011653-58011672 | None:intergenic | 35.0% |
TCACTAACTATGCTTCCAAA+TGG | - | chr2_2:58011671-58011690 | Msa0260460:CDS | 35.0% | |
! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_2:58011700-58011719 | None:intergenic | 35.0% |
CATGATGTTGTTACACTTTC+AGG | + | chr2_2:58011748-58011767 | None:intergenic | 35.0% | |
! | CTGAAAGTGTAACAACATCA+TGG | - | chr2_2:58011746-58011765 | Msa0260460:CDS | 35.0% |
CAACATCATGGATGAAGAAA+AGG | - | chr2_2:58011758-58011777 | Msa0260460:CDS | 35.0% | |
!!! | CCATGTTAGCTGTTTTAAGA+AGG | + | chr2_2:58011855-58011874 | None:intergenic | 35.0% |
CCTTCTTAAAACAGCTAACA+TGG | - | chr2_2:58011852-58011871 | Msa0260460:CDS | 35.0% | |
CTTCTTTCAGTCATACTTGT+GGG | - | chr2_2:58011962-58011981 | Msa0260460:CDS | 35.0% | |
AACAAGCTCAACATCCAAAA+GGG | + | chr2_2:58011989-58012008 | None:intergenic | 35.0% | |
TAACAAGCTCAACATCCAAA+AGG | + | chr2_2:58011990-58012009 | None:intergenic | 35.0% | |
!! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_2:58011992-58012011 | Msa0260460:CDS | 35.0% |
!! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_2:58011996-58012015 | Msa0260460:CDS | 35.0% |
! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_2:58012039-58012058 | Msa0260460:intron | 35.0% |
AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_2:58012427-58012446 | Msa0260460:intron | 35.0% | |
ACTCTCTGATATACGTTTGT+TGG | - | chr2_2:58012463-58012482 | Msa0260460:intron | 35.0% | |
TGTGTGACTTTCTAACTAGA+AGG | + | chr2_2:58012492-58012511 | None:intergenic | 35.0% | |
ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_2:58012604-58012623 | Msa0260460:intron | 35.0% | |
ACTCACATATATGCGTTTGT+AGG | - | chr2_2:58012633-58012652 | Msa0260460:intron | 35.0% | |
AATCAAGAGATATCGTTCGT+CGG | - | chr2_2:58012679-58012698 | Msa0260460:intron | 35.0% | |
!! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_2:58012731-58012750 | None:intergenic | 35.0% |
TTCCAAATCTAGATAGGACA+TGG | - | chr2_2:58012826-58012845 | Msa0260460:intron | 35.0% | |
! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_2:58012853-58012872 | None:intergenic | 35.0% |
GCAATCAACATTTCTCTACA+TGG | - | chr2_2:58012863-58012882 | Msa0260460:intron | 35.0% | |
TGCATGCATCAGTATATATG+TGG | + | chr2_2:58012901-58012920 | None:intergenic | 35.0% | |
! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_2:58012928-58012947 | Msa0260460:intron | 35.0% |
TAACATACCATTAAGGTTGG+AGG | - | chr2_2:58013087-58013106 | Msa0260460:intron | 35.0% | |
!! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_2:58013139-58013158 | None:intergenic | 35.0% |
GTCAAGACATCGGTAATTAT+TGG | + | chr2_2:58013172-58013191 | None:intergenic | 35.0% | |
ATTCCATTCAGTCAAGACAT+CGG | + | chr2_2:58013182-58013201 | None:intergenic | 35.0% | |
AGATTTAGATTGCATGCTGT+TGG | + | chr2_2:58013206-58013225 | None:intergenic | 35.0% | |
GGAAATGAACACACAACAAA+TGG | - | chr2_2:58013542-58013561 | Msa0260460:CDS | 35.0% | |
!! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_2:58013686-58013705 | Msa0260460:CDS | 35.0% |
GATGAAGCTGAAACTGAATT+TGG | - | chr2_2:58013723-58013742 | Msa0260460:CDS | 35.0% | |
! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_2:58013733-58013752 | Msa0260460:CDS | 35.0% |
!!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_2:58013765-58013784 | None:intergenic | 35.0% |
! | AGAGATTTTCTCCACTTATG+AGG | + | chr2_2:58013807-58013826 | None:intergenic | 35.0% |
TCCAAACCAACAAGTAACTT+TGG | - | chr2_2:58011537-58011556 | Msa0260460:CDS | 35.0% | |
! | TCCAAAGTTACTTGTTGGTT+TGG | + | chr2_2:58011541-58011560 | None:intergenic | 35.0% |
TAATGAAGCAATCCATGTCA+AGG | + | chr2_2:58011594-58011613 | None:intergenic | 35.0% | |
!! | GATGATGGAACCGATTAAAT+CGG | + | chr2_2:58011653-58011672 | None:intergenic | 35.0% |
TCACTAACTATGCTTCCAAA+TGG | - | chr2_2:58011671-58011690 | Msa0260460:CDS | 35.0% | |
! | GAATTTGAAGTTTCAAGGTC+AGG | + | chr2_2:58011700-58011719 | None:intergenic | 35.0% |
CATGATGTTGTTACACTTTC+AGG | + | chr2_2:58011748-58011767 | None:intergenic | 35.0% | |
! | CTGAAAGTGTAACAACATCA+TGG | - | chr2_2:58011746-58011765 | Msa0260460:CDS | 35.0% |
CAACATCATGGATGAAGAAA+AGG | - | chr2_2:58011758-58011777 | Msa0260460:CDS | 35.0% | |
!!! | CCATGTTAGCTGTTTTAAGA+AGG | + | chr2_2:58011855-58011874 | None:intergenic | 35.0% |
CCTTCTTAAAACAGCTAACA+TGG | - | chr2_2:58011852-58011871 | Msa0260460:CDS | 35.0% | |
CTTCTTTCAGTCATACTTGT+GGG | - | chr2_2:58011962-58011981 | Msa0260460:CDS | 35.0% | |
AACAAGCTCAACATCCAAAA+GGG | + | chr2_2:58011989-58012008 | None:intergenic | 35.0% | |
TAACAAGCTCAACATCCAAA+AGG | + | chr2_2:58011990-58012009 | None:intergenic | 35.0% | |
!! | TGGATGTTGAGCTTGTTATT+AGG | - | chr2_2:58011992-58012011 | Msa0260460:CDS | 35.0% |
!! | TGTTGAGCTTGTTATTAGGT+TGG | - | chr2_2:58011996-58012015 | Msa0260460:CDS | 35.0% |
! | GATCATGATGGAGTTAAAAC+TGG | - | chr2_2:58012039-58012058 | Msa0260460:intron | 35.0% |
AATGTTTCTTGTGTGGTGAT+TGG | - | chr2_2:58012427-58012446 | Msa0260460:intron | 35.0% | |
ACTCTCTGATATACGTTTGT+TGG | - | chr2_2:58012463-58012482 | Msa0260460:intron | 35.0% | |
TGTGTGACTTTCTAACTAGA+AGG | + | chr2_2:58012492-58012511 | None:intergenic | 35.0% | |
ATTGTTTCATGTGTGTTCAC+CGG | - | chr2_2:58012604-58012623 | Msa0260460:intron | 35.0% | |
ACTCACATATATGCGTTTGT+AGG | - | chr2_2:58012633-58012652 | Msa0260460:intron | 35.0% | |
AATCAAGAGATATCGTTCGT+CGG | - | chr2_2:58012679-58012698 | Msa0260460:intron | 35.0% | |
!! | AAGTCAATTTTGGTGAAGTC+GGG | + | chr2_2:58012731-58012750 | None:intergenic | 35.0% |
TTCCAAATCTAGATAGGACA+TGG | - | chr2_2:58012826-58012845 | Msa0260460:intron | 35.0% | |
! | TGTTGATTGCAACTAGCTAT+TGG | + | chr2_2:58012853-58012872 | None:intergenic | 35.0% |
GCAATCAACATTTCTCTACA+TGG | - | chr2_2:58012863-58012882 | Msa0260460:intron | 35.0% | |
TGCATGCATCAGTATATATG+TGG | + | chr2_2:58012901-58012920 | None:intergenic | 35.0% | |
! | ATGTGCCTGTTTTACTGAAA+TGG | - | chr2_2:58012928-58012947 | Msa0260460:intron | 35.0% |
TAACATACCATTAAGGTTGG+AGG | - | chr2_2:58013087-58013106 | Msa0260460:intron | 35.0% | |
!! | GATGGTCCATATTTTAAGCT+CGG | + | chr2_2:58013139-58013158 | None:intergenic | 35.0% |
GTCAAGACATCGGTAATTAT+TGG | + | chr2_2:58013172-58013191 | None:intergenic | 35.0% | |
ATTCCATTCAGTCAAGACAT+CGG | + | chr2_2:58013182-58013201 | None:intergenic | 35.0% | |
AGATTTAGATTGCATGCTGT+TGG | + | chr2_2:58013206-58013225 | None:intergenic | 35.0% | |
GGAAATGAACACACAACAAA+TGG | - | chr2_2:58013542-58013561 | Msa0260460:CDS | 35.0% | |
!! | TATTAAAAGCATCGGAGAGA+CGG | - | chr2_2:58013686-58013705 | Msa0260460:CDS | 35.0% |
GATGAAGCTGAAACTGAATT+TGG | - | chr2_2:58013723-58013742 | Msa0260460:CDS | 35.0% | |
! | AAACTGAATTTGGGTTTGGA+AGG | - | chr2_2:58013733-58013752 | Msa0260460:CDS | 35.0% |
!!! | GTACTAGTTTTCATGTCCAT+AGG | + | chr2_2:58013765-58013784 | None:intergenic | 35.0% |
! | AGAGATTTTCTCCACTTATG+AGG | + | chr2_2:58013807-58013826 | None:intergenic | 35.0% |
!! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_2:58011529-58011548 | None:intergenic | 40.0% |
GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_2:58011640-58011659 | Msa0260460:CDS | 40.0% | |
! | GGAAGCATAGTTAGTGATGA+TGG | + | chr2_2:58011668-58011687 | None:intergenic | 40.0% |
CATGGAATGGAATCTTTGTC+TGG | + | chr2_2:58011817-58011836 | None:intergenic | 40.0% | |
!!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | chr2_2:58011849-58011868 | None:intergenic | 40.0% |
CCACAAGTATGACTGAAAGA+AGG | + | chr2_2:58011964-58011983 | None:intergenic | 40.0% | |
CCTTCTTTCAGTCATACTTG+TGG | - | chr2_2:58011961-58011980 | Msa0260460:CDS | 40.0% | |
!! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_2:58012050-58012069 | Msa0260460:intron | 40.0% |
ATCTCAGGTTCAATTCTTCC+CGG | - | chr2_2:58012279-58012298 | Msa0260460:intron | 40.0% | |
TAGTCCACTGAAATTGACAC+CGG | + | chr2_2:58012301-58012320 | None:intergenic | 40.0% | |
!! | TGGACTAGTTTGACGACTTA+AGG | - | chr2_2:58012314-58012333 | Msa0260460:intron | 40.0% |
!! | GGACTAGTTTGACGACTTAA+GGG | - | chr2_2:58012315-58012334 | Msa0260460:intron | 40.0% |
TATATCAGAGAGTCTCATGC+TGG | + | chr2_2:58012456-58012475 | None:intergenic | 40.0% | |
ACCGTTAGATTGACGAAGAT+CGG | - | chr2_2:58012526-58012545 | Msa0260460:intron | 40.0% | |
TCCGATCTTCGTCAATCTAA+CGG | + | chr2_2:58012530-58012549 | None:intergenic | 40.0% | |
CATATATGTGAGTCTCATGC+CGG | + | chr2_2:58012626-58012645 | None:intergenic | 40.0% | |
ATCTCTTGATTGCGTGACTA+CGG | + | chr2_2:58012670-58012689 | None:intergenic | 40.0% | |
TTCGTCGGATTGACAAAGAT+CGG | - | chr2_2:58012694-58012713 | Msa0260460:intron | 40.0% | |
GTCCATGTCCTATCTAGATT+TGG | + | chr2_2:58012831-58012850 | None:intergenic | 40.0% | |
GCTCTACCGAGCTTAAAATA+TGG | - | chr2_2:58013130-58013149 | Msa0260460:CDS | 40.0% | |
TTACCGATGTCTTGACTGAA+TGG | - | chr2_2:58013176-58013195 | Msa0260460:CDS | 40.0% | |
!! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_2:58013325-58013344 | Msa0260460:CDS | 40.0% |
TTCATGCAGCTCAAAACGAA+CGG | - | chr2_2:58013370-58013389 | Msa0260460:CDS | 40.0% | |
ACTTGAATAACAGCTCTCAC+AGG | + | chr2_2:58013399-58013418 | None:intergenic | 40.0% | |
ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_2:58013430-58013449 | None:intergenic | 40.0% | |
AACTCAACCGTTACGTTGAT+TGG | - | chr2_2:58013439-58013458 | Msa0260460:CDS | 40.0% | |
AAGCACTCCAATCAACGTAA+CGG | + | chr2_2:58013449-58013468 | None:intergenic | 40.0% | |
AACTGAAGGAAGACGTTTAC+AGG | - | chr2_2:58013574-58013593 | Msa0260460:CDS | 40.0% | |
! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_2:58013729-58013748 | Msa0260460:CDS | 40.0% |
GGACATGAAAACTAGTACTG+TGG | - | chr2_2:58013767-58013786 | Msa0260460:CDS | 40.0% | |
CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_2:58013778-58013797 | Msa0260460:CDS | 40.0% | |
AAAGTAGGACTCCTCATAAG+TGG | - | chr2_2:58013793-58013812 | Msa0260460:CDS | 40.0% | |
!! | TGTTGGTTTGGACTTGTTTC+TGG | + | chr2_2:58011529-58011548 | None:intergenic | 40.0% |
GGTGTTCGTTCCGATTTAAT+CGG | - | chr2_2:58011640-58011659 | Msa0260460:CDS | 40.0% | |
! | GGAAGCATAGTTAGTGATGA+TGG | + | chr2_2:58011668-58011687 | None:intergenic | 40.0% |
CATGGAATGGAATCTTTGTC+TGG | + | chr2_2:58011817-58011836 | None:intergenic | 40.0% | |
!!! | TAGCTGTTTTAAGAAGGCGA+AGG | + | chr2_2:58011849-58011868 | None:intergenic | 40.0% |
CCACAAGTATGACTGAAAGA+AGG | + | chr2_2:58011964-58011983 | None:intergenic | 40.0% | |
CCTTCTTTCAGTCATACTTG+TGG | - | chr2_2:58011961-58011980 | Msa0260460:CDS | 40.0% | |
!! | AGTTAAAACTGGTGCTGCTT+TGG | - | chr2_2:58012050-58012069 | Msa0260460:intron | 40.0% |
ATCTCAGGTTCAATTCTTCC+CGG | - | chr2_2:58012279-58012298 | Msa0260460:intron | 40.0% | |
TAGTCCACTGAAATTGACAC+CGG | + | chr2_2:58012301-58012320 | None:intergenic | 40.0% | |
!! | TGGACTAGTTTGACGACTTA+AGG | - | chr2_2:58012314-58012333 | Msa0260460:intron | 40.0% |
!! | GGACTAGTTTGACGACTTAA+GGG | - | chr2_2:58012315-58012334 | Msa0260460:intron | 40.0% |
TATATCAGAGAGTCTCATGC+TGG | + | chr2_2:58012456-58012475 | None:intergenic | 40.0% | |
ACCGTTAGATTGACGAAGAT+CGG | - | chr2_2:58012526-58012545 | Msa0260460:intron | 40.0% | |
TCCGATCTTCGTCAATCTAA+CGG | + | chr2_2:58012530-58012549 | None:intergenic | 40.0% | |
CATATATGTGAGTCTCATGC+CGG | + | chr2_2:58012626-58012645 | None:intergenic | 40.0% | |
ATCTCTTGATTGCGTGACTA+CGG | + | chr2_2:58012670-58012689 | None:intergenic | 40.0% | |
TTCGTCGGATTGACAAAGAT+CGG | - | chr2_2:58012694-58012713 | Msa0260460:intron | 40.0% | |
GTCCATGTCCTATCTAGATT+TGG | + | chr2_2:58012831-58012850 | None:intergenic | 40.0% | |
GCTCTACCGAGCTTAAAATA+TGG | - | chr2_2:58013130-58013149 | Msa0260460:CDS | 40.0% | |
TTACCGATGTCTTGACTGAA+TGG | - | chr2_2:58013176-58013195 | Msa0260460:CDS | 40.0% | |
!! | TGTGTAGGTTGATTGATAGC+AGG | - | chr2_2:58013325-58013344 | Msa0260460:CDS | 40.0% |
TTCATGCAGCTCAAAACGAA+CGG | - | chr2_2:58013370-58013389 | Msa0260460:CDS | 40.0% | |
ACTTGAATAACAGCTCTCAC+AGG | + | chr2_2:58013399-58013418 | None:intergenic | 40.0% | |
ACGGTTGAGTTTCGTTTGTT+CGG | + | chr2_2:58013430-58013449 | None:intergenic | 40.0% | |
AACTCAACCGTTACGTTGAT+TGG | - | chr2_2:58013439-58013458 | Msa0260460:CDS | 40.0% | |
AAGCACTCCAATCAACGTAA+CGG | + | chr2_2:58013449-58013468 | None:intergenic | 40.0% | |
AACTGAAGGAAGACGTTTAC+AGG | - | chr2_2:58013574-58013593 | Msa0260460:CDS | 40.0% | |
! | GCTGAAACTGAATTTGGGTT+TGG | - | chr2_2:58013729-58013748 | Msa0260460:CDS | 40.0% |
GGACATGAAAACTAGTACTG+TGG | - | chr2_2:58013767-58013786 | Msa0260460:CDS | 40.0% | |
CTAGTACTGTGGTCAAAAGT+AGG | - | chr2_2:58013778-58013797 | Msa0260460:CDS | 40.0% | |
AAAGTAGGACTCCTCATAAG+TGG | - | chr2_2:58013793-58013812 | Msa0260460:CDS | 40.0% | |
AGATGCATGCATCCTTGACA+TGG | - | chr2_2:58011579-58011598 | Msa0260460:CDS | 45.0% | |
! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_2:58011797-58011816 | None:intergenic | 45.0% |
GGAATGGAATCTTTGTCTGG+TGG | + | chr2_2:58011814-58011833 | None:intergenic | 45.0% | |
AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_2:58011830-58011849 | None:intergenic | 45.0% | |
!!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_2:58011846-58011865 | None:intergenic | 45.0% |
! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_2:58011972-58011991 | Msa0260460:CDS | 45.0% |
GATTGTTACCTTGCTGAAGC+TGG | - | chr2_2:58012093-58012112 | Msa0260460:intron | 45.0% | |
TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_2:58012098-58012117 | Msa0260460:intron | 45.0% | |
!! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_2:58012138-58012157 | Msa0260460:intron | 45.0% |
TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_2:58012171-58012190 | None:intergenic | 45.0% | |
CATCATCAGTAGCTCTTGCA+TGG | + | chr2_2:58012176-58012195 | None:intergenic | 45.0% | |
CATGCAAGAGCTACTGATGA+TGG | - | chr2_2:58012174-58012193 | Msa0260460:intron | 45.0% | |
AGTCCACTGAAATTGACACC+GGG | + | chr2_2:58012300-58012319 | None:intergenic | 45.0% | |
TCTCTTGATTGCGTGACTAC+GGG | + | chr2_2:58012669-58012688 | None:intergenic | 45.0% | |
ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_2:58013097-58013116 | None:intergenic | 45.0% | |
!! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_2:58013367-58013386 | None:intergenic | 45.0% |
GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_2:58013463-58013482 | Msa0260460:CDS | 45.0% | |
TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_2:58013480-58013499 | Msa0260460:CDS | 45.0% | |
CAATGTCATGCAAGCACAGA+TGG | - | chr2_2:58013611-58013630 | Msa0260460:CDS | 45.0% | |
GTTTGGAAGGCAAACACCTA+TGG | - | chr2_2:58013746-58013765 | Msa0260460:CDS | 45.0% | |
AGATGCATGCATCCTTGACA+TGG | - | chr2_2:58011579-58011598 | Msa0260460:CDS | 45.0% | |
! | TGGTGGAAGAACACTGACTA+AGG | + | chr2_2:58011797-58011816 | None:intergenic | 45.0% |
GGAATGGAATCTTTGTCTGG+TGG | + | chr2_2:58011814-58011833 | None:intergenic | 45.0% | |
AAGGAGGAAGTTGCATGGAA+TGG | + | chr2_2:58011830-58011849 | None:intergenic | 45.0% | |
!!! | CTGTTTTAAGAAGGCGAAGG+AGG | + | chr2_2:58011846-58011865 | None:intergenic | 45.0% |
! | TCATACTTGTGGGACCCTTT+TGG | - | chr2_2:58011972-58011991 | Msa0260460:CDS | 45.0% |
GATTGTTACCTTGCTGAAGC+TGG | - | chr2_2:58012093-58012112 | Msa0260460:intron | 45.0% | |
TTACCTTGCTGAAGCTGGTT+TGG | - | chr2_2:58012098-58012117 | Msa0260460:intron | 45.0% | |
!! | TCTCAGTTTGTTGCACTTGC+TGG | - | chr2_2:58012138-58012157 | Msa0260460:intron | 45.0% |
TCAGTAGCTCTTGCATGGTT+AGG | + | chr2_2:58012171-58012190 | None:intergenic | 45.0% | |
CATCATCAGTAGCTCTTGCA+TGG | + | chr2_2:58012176-58012195 | None:intergenic | 45.0% | |
CATGCAAGAGCTACTGATGA+TGG | - | chr2_2:58012174-58012193 | Msa0260460:intron | 45.0% | |
AGTCCACTGAAATTGACACC+GGG | + | chr2_2:58012300-58012319 | None:intergenic | 45.0% | |
TCTCTTGATTGCGTGACTAC+GGG | + | chr2_2:58012669-58012688 | None:intergenic | 45.0% | |
ACTAGCTCCTCCAACCTTAA+TGG | + | chr2_2:58013097-58013116 | None:intergenic | 45.0% | |
!! | GTTTTGAGCTGCATGAAGTG+AGG | + | chr2_2:58013367-58013386 | None:intergenic | 45.0% |
GTGCTTCTTTCAGTAGCTTG+AGG | - | chr2_2:58013463-58013482 | Msa0260460:CDS | 45.0% | |
TTGAGGAGTCCAAGTGGATA+CGG | - | chr2_2:58013480-58013499 | Msa0260460:CDS | 45.0% | |
CAATGTCATGCAAGCACAGA+TGG | - | chr2_2:58013611-58013630 | Msa0260460:CDS | 45.0% | |
GTTTGGAAGGCAAACACCTA+TGG | - | chr2_2:58013746-58013765 | Msa0260460:CDS | 45.0% | |
GGATGCATGCATCTTCGAAC+CGG | + | chr2_2:58011573-58011592 | None:intergenic | 50.0% | |
TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_2:58011689-58011708 | None:intergenic | 50.0% | |
CATCCAAACCAGCTTCAGCA+AGG | + | chr2_2:58012104-58012123 | None:intergenic | 50.0% | |
! | CTTCCCGGTGTCAATTTCAG+TGG | - | chr2_2:58012294-58012313 | Msa0260460:intron | 50.0% |
CTTTCTTGCTTCGACACGCT+TGG | + | chr2_2:58013297-58013316 | None:intergenic | 50.0% | |
AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_2:58013474-58013493 | Msa0260460:CDS | 50.0% | |
AACACACCACCGTATCCACT+TGG | + | chr2_2:58013492-58013511 | None:intergenic | 50.0% | |
AAGTGGATACGGTGGTGTGT+TGG | - | chr2_2:58013491-58013510 | Msa0260460:CDS | 50.0% | |
TAGAAAGACACCGTGCCTGT+GGG | + | chr2_2:58013518-58013537 | None:intergenic | 50.0% | |
TTAGAAAGACACCGTGCCTG+TGG | + | chr2_2:58013519-58013538 | None:intergenic | 50.0% | |
AGGCACGGTGTCTTTCTAAG+CGG | - | chr2_2:58013520-58013539 | Msa0260460:CDS | 50.0% | |
GCAAGCACAGATGGACAAGA+TGG | - | chr2_2:58013620-58013639 | Msa0260460:CDS | 50.0% | |
GGATGCATGCATCTTCGAAC+CGG | + | chr2_2:58011573-58011592 | None:intergenic | 50.0% | |
TTCAAGGTCAGGGAGCCATT+TGG | + | chr2_2:58011689-58011708 | None:intergenic | 50.0% | |
CATCCAAACCAGCTTCAGCA+AGG | + | chr2_2:58012104-58012123 | None:intergenic | 50.0% | |
! | CTTCCCGGTGTCAATTTCAG+TGG | - | chr2_2:58012294-58012313 | Msa0260460:intron | 50.0% |
CTTTCTTGCTTCGACACGCT+TGG | + | chr2_2:58013297-58013316 | None:intergenic | 50.0% | |
AGTAGCTTGAGGAGTCCAAG+TGG | - | chr2_2:58013474-58013493 | Msa0260460:CDS | 50.0% | |
AACACACCACCGTATCCACT+TGG | + | chr2_2:58013492-58013511 | None:intergenic | 50.0% | |
AAGTGGATACGGTGGTGTGT+TGG | - | chr2_2:58013491-58013510 | Msa0260460:CDS | 50.0% | |
TAGAAAGACACCGTGCCTGT+GGG | + | chr2_2:58013518-58013537 | None:intergenic | 50.0% | |
TTAGAAAGACACCGTGCCTG+TGG | + | chr2_2:58013519-58013538 | None:intergenic | 50.0% | |
AGGCACGGTGTCTTTCTAAG+CGG | - | chr2_2:58013520-58013539 | Msa0260460:CDS | 50.0% | |
GCAAGCACAGATGGACAAGA+TGG | - | chr2_2:58013620-58013639 | Msa0260460:CDS | 50.0% | |
AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_2:58011835-58011854 | None:intergenic | 55.0% | |
GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_2:58013360-58013379 | None:intergenic | 55.0% | |
AGGAGTCCAAGTGGATACGG+TGG | - | chr2_2:58013483-58013502 | Msa0260460:CDS | 55.0% | |
GGCACGGTGTCTTTCTAAGC+GGG | - | chr2_2:58013521-58013540 | Msa0260460:CDS | 55.0% | |
AGGCGAAGGAGGAAGTTGCA+TGG | + | chr2_2:58011835-58011854 | None:intergenic | 55.0% | |
GCTGCATGAAGTGAGGCTTC+TGG | + | chr2_2:58013360-58013379 | None:intergenic | 55.0% | |
AGGAGTCCAAGTGGATACGG+TGG | - | chr2_2:58013483-58013502 | Msa0260460:CDS | 55.0% | |
GGCACGGTGTCTTTCTAAGC+GGG | - | chr2_2:58013521-58013540 | Msa0260460:CDS | 55.0% | |
GTGTGTTGGACCCACAGGCA+CGG | - | chr2_2:58013505-58013524 | Msa0260460:CDS | 60.0% | |
GTGTGTTGGACCCACAGGCA+CGG | - | chr2_2:58013505-58013524 | Msa0260460:CDS | 60.0% | |
CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_2:58013500-58013519 | Msa0260460:CDS | 65.0% | |
CGGTGGTGTGTTGGACCCAC+AGG | - | chr2_2:58013500-58013519 | Msa0260460:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 58011502 | 58013833 | 58011502 | ID=Msa0260460;Name=Msa0260460 |
chr2_2 | mRNA | 58011502 | 58013833 | 58011502 | ID=Msa0260460-mRNA-1;Parent=Msa0260460;Name=Msa0260460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|423 |
chr2_2 | exon | 58013108 | 58013833 | 58013108 | ID=Msa0260460-mRNA-1:exon:17719;Parent=Msa0260460-mRNA-1 |
chr2_2 | exon | 58011502 | 58012047 | 58011502 | ID=Msa0260460-mRNA-1:exon:17718;Parent=Msa0260460-mRNA-1 |
chr2_2 | CDS | 58013108 | 58013833 | 58013108 | ID=Msa0260460-mRNA-1:cds;Parent=Msa0260460-mRNA-1 |
chr2_2 | CDS | 58011502 | 58012047 | 58011502 | ID=Msa0260460-mRNA-1:cds;Parent=Msa0260460-mRNA-1 |
Gene Sequence |
Protein sequence |