Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229770 | XP_003601536.2 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229770 | sp|Q94B74|NUDT2_ARATH | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 6.95e-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229770 | G7J8V6 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229770 | Msa0387720 | 0.877062 | 8.490198e-69 | -8.615850e-47 |
| Msa0229770 | Msa0438700 | 0.982159 | 2.215106e-154 | -8.615850e-47 |
| Msa0229770 | Msa1101590 | 0.881771 | 1.819003e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229770 | MtrunA17_Chr3g0120821 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Msa0229770 | MtrunA17_Chr8g0383231 | 64.093 | 259 | 91 | 2 | 83 | 339 | 23 | 281 | 1.32e-122 | 354 |
| Msa0229770 | MtrunA17_Chr3g0102431 | 57.977 | 257 | 106 | 1 | 78 | 332 | 25 | 281 | 9.41e-105 | 308 |
| Msa0229770 | MtrunA17_Chr2g0290501 | 53.150 | 254 | 117 | 1 | 78 | 329 | 71 | 324 | 1.20e-104 | 310 |
| Msa0229770 | MtrunA17_Chr4g0076351 | 54.475 | 257 | 112 | 3 | 78 | 329 | 12 | 268 | 3.67e-103 | 304 |
| Msa0229770 | MtrunA17_Chr4g0055811 | 50.000 | 238 | 118 | 1 | 78 | 314 | 91 | 328 | 8.17e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229770 | AT5G47650.5 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0229770 | AT5G47650.3 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0229770 | AT5G47650.1 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0229770 | AT5G47650.4 | 56.031 | 257 | 113 | 0 | 76 | 332 | 63 | 319 | 3.36e-109 | 322 |
| Msa0229770 | AT5G47650.2 | 56.031 | 257 | 113 | 0 | 76 | 332 | 64 | 320 | 4.97e-109 | 321 |
| Msa0229770 | AT4G25434.10 | 54.651 | 258 | 115 | 1 | 78 | 333 | 19 | 276 | 4.40e-102 | 302 |
| Msa0229770 | AT4G25434.1 | 53.101 | 258 | 114 | 2 | 78 | 333 | 19 | 271 | 1.62e-96 | 288 |
| Msa0229770 | AT4G25434.8 | 49.474 | 285 | 115 | 2 | 78 | 333 | 19 | 303 | 3.31e-96 | 288 |
| Msa0229770 | AT4G12720.2 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0229770 | AT4G12720.3 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0229770 | AT4G12720.1 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0229770 | AT2G04450.1 | 54.135 | 266 | 117 | 5 | 78 | 339 | 10 | 274 | 1.17e-92 | 278 |
| Msa0229770 | AT2G04430.2 | 50.943 | 265 | 121 | 5 | 78 | 337 | 10 | 270 | 6.81e-91 | 273 |
| Msa0229770 | AT4G25434.2 | 48.070 | 285 | 114 | 3 | 78 | 333 | 19 | 298 | 1.05e-90 | 274 |
| Msa0229770 | AT2G04430.1 | 50.943 | 265 | 121 | 5 | 78 | 337 | 29 | 289 | 1.54e-90 | 273 |
| Msa0229770 | AT4G25434.7 | 61.616 | 198 | 76 | 0 | 78 | 275 | 19 | 216 | 1.39e-89 | 268 |
| Msa0229770 | AT4G12720.4 | 46.078 | 306 | 122 | 4 | 78 | 340 | 10 | 315 | 1.33e-87 | 266 |
| Msa0229770 | AT5G47240.1 | 48.921 | 278 | 135 | 5 | 62 | 335 | 82 | 356 | 1.12e-85 | 263 |
| Msa0229770 | AT4G25434.9 | 59.596 | 198 | 75 | 1 | 78 | 275 | 19 | 211 | 4.05e-84 | 254 |
| Msa0229770 | AT4G25434.6 | 54.222 | 225 | 76 | 1 | 78 | 275 | 19 | 243 | 4.80e-84 | 254 |
| Msa0229770 | AT5G47240.2 | 44.625 | 307 | 134 | 6 | 62 | 335 | 82 | 385 | 7.42e-80 | 249 |
| Msa0229770 | AT4G12720.5 | 57.500 | 200 | 83 | 2 | 78 | 275 | 10 | 209 | 2.29e-77 | 236 |
| Msa0229770 | AT4G25434.3 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0229770 | AT4G25434.5 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0229770 | AT4G25434.12 | 63.354 | 161 | 59 | 0 | 78 | 238 | 19 | 179 | 5.97e-73 | 226 |
| Msa0229770 | AT4G25434.4 | 52.500 | 200 | 88 | 2 | 136 | 333 | 32 | 226 | 1.23e-70 | 220 |
| Msa0229770 | AT4G25434.11 | 54.255 | 188 | 59 | 1 | 78 | 238 | 19 | 206 | 3.33e-67 | 212 |
| Msa0229770 | AT4G12720.6 | 51.562 | 192 | 90 | 3 | 152 | 340 | 1 | 192 | 7.98e-64 | 201 |
| Msa0229770 | AT4G25434.13 | 47.393 | 211 | 82 | 2 | 152 | 333 | 1 | 211 | 9.26e-62 | 197 |
| Msa0229770 | AT2G04440.1 | 54.348 | 138 | 61 | 1 | 78 | 213 | 10 | 147 | 1.75e-45 | 155 |
Find 60 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCCTCTTCAGCTTTAT+TGG | 0.138830 | 2_2:+1597796 | Msa0229770:CDS |
| ATCACTTGATGCTTGTATAT+TGG | 0.219532 | 2_2:+1598273 | Msa0229770:CDS |
| TTGATAGGTCCTTGTGGTTC+AGG | 0.282859 | 2_2:+1598700 | Msa0229770:intron |
| ATGATTTAGAAGTTGCTAAA+AGG | 0.301913 | 2_2:-1597157 | None:intergenic |
| GATTCAGCGGTAAAGGAATA+TGG | 0.321175 | 2_2:+1598735 | Msa0229770:CDS |
| AGTTCAAGATTAGTGAAGTT+TGG | 0.337473 | 2_2:-1599637 | None:intergenic |
| TATACAAGCATCAAGTGATT+TGG | 0.351532 | 2_2:-1598269 | None:intergenic |
| AAAAGTAGGTTTATCAAAGT+TGG | 0.377713 | 2_2:+1599515 | Msa0229770:CDS |
| GCATTTGCAGGAATGGTATC+AGG | 0.387309 | 2_2:-1598308 | None:intergenic |
| GAAGTTTGGAAGTTAACAAA+TGG | 0.394809 | 2_2:-1599623 | None:intergenic |
| TTTGACTTTCTTACAAAAGT+AGG | 0.402294 | 2_2:+1599501 | Msa0229770:CDS |
| TAAACATTACCTTGAAATTG+AGG | 0.413912 | 2_2:-1597242 | None:intergenic |
| AGGATTACTGACCTCCATAT+TGG | 0.421202 | 2_2:-1598369 | None:intergenic |
| TGTAAACATTGAGGAACCTA+TGG | 0.430629 | 2_2:+1597889 | Msa0229770:CDS |
| ACAAGATTTGAGTGTTCTCT+TGG | 0.433589 | 2_2:-1598116 | None:intergenic |
| GTCATTTAACATTCAGAGCC+AGG | 0.434886 | 2_2:+1599236 | Msa0229770:CDS |
| CTGCCTCAATTTCTGAAGCC+TGG | 0.437999 | 2_2:-1599254 | None:intergenic |
| AATTCAGTGGATGGCAATTG+AGG | 0.451518 | 2_2:+1599440 | Msa0229770:intron |
| GAGGCAGACCAATATGCTCT+TGG | 0.461247 | 2_2:-1597782 | None:intergenic |
| TTCAGAAATTGAGGCAGCTC+AGG | 0.463477 | 2_2:+1599260 | Msa0229770:CDS |
| AATGGTAGATTCAGCGGTAA+AGG | 0.464011 | 2_2:+1598728 | Msa0229770:CDS |
| CTCTTCAGCTTTATTGGATG+AGG | 0.465200 | 2_2:+1597802 | Msa0229770:CDS |
| AAACATTACCTTGAAATTGA+GGG | 0.467955 | 2_2:-1597241 | None:intergenic |
| ATTATCACAATGGAGGATAC+AGG | 0.479874 | 2_2:+1597946 | Msa0229770:CDS |
| ATGCGGTGAGAAGCATTTGC+AGG | 0.480367 | 2_2:-1598320 | None:intergenic |
| AAGTTTGGAAGTTAACAAAT+GGG | 0.487670 | 2_2:-1599622 | None:intergenic |
| TCTATCATCCCTCAATTTCA+AGG | 0.489999 | 2_2:+1597233 | Msa0229770:CDS |
| GAGCCAGGCTTCAGAAATTG+AGG | 0.505160 | 2_2:+1599251 | Msa0229770:CDS |
| GGAATGGTATCAGGAGTGTT+GGG | 0.509248 | 2_2:-1598299 | None:intergenic |
| AGGCAGACCAATATGCTCTT+GGG | 0.509293 | 2_2:-1597781 | None:intergenic |
| GTGAGAGGTAGATGTACTAC+TGG | 0.512908 | 2_2:+1597827 | Msa0229770:CDS |
| AGAGAAGTCAAAGAAGAGAC+AGG | 0.513614 | 2_2:+1598891 | Msa0229770:CDS |
| AGTGATTTGGTTCAGCATGA+TGG | 0.514943 | 2_2:-1598256 | None:intergenic |
| GGAATATGGAAATTGCCTAC+TGG | 0.514957 | 2_2:+1598749 | Msa0229770:CDS |
| AGGAATGGTATCAGGAGTGT+TGG | 0.517783 | 2_2:-1598300 | None:intergenic |
| GCTAAAACTAAAACTTCTCA+TGG | 0.518230 | 2_2:+1597209 | Msa0229770:CDS |
| TTATATGCATGTTGCAACCT+CGG | 0.518990 | 2_2:+1599214 | Msa0229770:CDS |
| GTGAGAAGCATTTGCAGGAA+TGG | 0.520377 | 2_2:-1598315 | None:intergenic |
| CTCATCCAATAAAGCTGAAG+AGG | 0.520600 | 2_2:-1597801 | None:intergenic |
| TCTTGTGGCTTCTGCTGTTG+AGG | 0.529767 | 2_2:+1598133 | Msa0229770:CDS |
| GCTTCTCACCGCATTTCTAT+CGG | 0.534615 | 2_2:+1598329 | Msa0229770:CDS |
| GTAGGTTTATCAAAGTTGGA+AGG | 0.564992 | 2_2:+1599519 | Msa0229770:CDS |
| AGGAGTTATTGTAAACATTG+AGG | 0.569638 | 2_2:+1597880 | Msa0229770:CDS |
| GCCTACTGGAGCTGTTAATG+AGG | 0.578161 | 2_2:+1598763 | Msa0229770:CDS |
| GCAAAATCAAAAGAATCCAT+AGG | 0.578220 | 2_2:-1597905 | None:intergenic |
| TTATTGGATGAGGAAGTGAG+AGG | 0.590204 | 2_2:+1597812 | Msa0229770:CDS |
| GTGGAGGGACAGAAGATGTG+AGG | 0.596463 | 2_2:-1597181 | None:intergenic |
| TGGATTACTCAAAGCTGTTG+AGG | 0.604757 | 2_2:+1597847 | Msa0229770:CDS |
| AAGAGAACACTCAAATCTTG+TGG | 0.611816 | 2_2:+1598118 | Msa0229770:CDS |
| TCTAGGGAAAGAAGGGAGTG+TGG | 0.616092 | 2_2:+1598084 | Msa0229770:intron |
| TGTAGTCAATGCCAATATGG+AGG | 0.628749 | 2_2:+1598358 | Msa0229770:CDS |
| AAGTTGGAAGGAAAGTACTC+AGG | 0.639796 | 2_2:+1599531 | Msa0229770:CDS |
| GTACACATGGGACTTGCAAG+AGG | 0.641683 | 2_2:-1599580 | None:intergenic |
| ATGCTTCATTATCACAATGG+AGG | 0.642405 | 2_2:+1597939 | Msa0229770:CDS |
| TAGATGCTTCATTATCACAA+TGG | 0.672794 | 2_2:+1597936 | Msa0229770:CDS |
| AAAGCTGTTGAGGATCAACA+TGG | 0.673299 | 2_2:+1597857 | Msa0229770:CDS |
| CTCTGAATGTTAAATGACCG+AGG | 0.679928 | 2_2:-1599231 | None:intergenic |
| ACCTCATTAACAGCTCCAGT+AGG | 0.685283 | 2_2:-1598764 | None:intergenic |
| CAAAAGCACCGATAGAAATG+CGG | 0.718623 | 2_2:-1598337 | None:intergenic |
| GCTGTTGAGGATCAACATGG+AGG | 0.750639 | 2_2:+1597860 | Msa0229770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAAATAATTTATGT+TGG | + | chr2_2:1597469-1597488 | Msa0229770:intron | 10.0% |
| !! | AATGTAAAATAATTTATGTT+GGG | + | chr2_2:1597470-1597489 | Msa0229770:intron | 10.0% |
| !! | AAAGATATTGAAAAATAATT+TGG | - | chr2_2:1597660-1597679 | None:intergenic | 10.0% |
| !! | GATTAATAAAAAAATATAGA+AGG | - | chr2_2:1598392-1598411 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTTAAAATTCAG+TGG | + | chr2_2:1599427-1599446 | Msa0229770:intron | 10.0% |
| !! | TCCTTAAAATTAAGAAAAAT+TGG | + | chr2_2:1597990-1598009 | Msa0229770:intron | 15.0% |
| !!! | TCCAATTTTTCTTAATTTTA+AGG | - | chr2_2:1597994-1598013 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGTTATTTCTAT+TGG | + | chr2_2:1598036-1598055 | Msa0229770:intron | 15.0% |
| !!! | TTTTTTATTAATCAGATTGA+AGG | + | chr2_2:1598399-1598418 | Msa0229770:intron | 15.0% |
| !! | AAAAATTTATTTGACTATGT+TGG | + | chr2_2:1598541-1598560 | Msa0229770:intron | 15.0% |
| !! | AATATGTAAAACTAAAGTAA+TGG | - | chr2_2:1599293-1599312 | None:intergenic | 15.0% |
| !! | CTAAATTGTTCTTTATATCA+AGG | + | chr2_2:1597353-1597372 | Msa0229770:intron | 20.0% |
| !!! | AAAATAATTTGGTGTATGTT+TGG | - | chr2_2:1597649-1597668 | None:intergenic | 20.0% |
| !!! | AGCAAAGTTATTTTTCAATA+TGG | + | chr2_2:1597685-1597704 | Msa0229770:intron | 20.0% |
| !! | TTAGTATTTGAATAATGCTT+AGG | - | chr2_2:1597722-1597741 | None:intergenic | 20.0% |
| !! | TACACATTAAGAAATATGTA+TGG | - | chr2_2:1598651-1598670 | None:intergenic | 20.0% |
| !! | AAGGTTTGAATTTCAAAATA+TGG | - | chr2_2:1598977-1598996 | None:intergenic | 20.0% |
| !! | TGTTCGAATATTACTATATT+TGG | + | chr2_2:1599100-1599119 | Msa0229770:intron | 20.0% |
| !! | AAAACTCACATTAAATGAAT+TGG | - | chr2_2:1599406-1599425 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAAATTCAGTGGA+TGG | + | chr2_2:1599431-1599450 | Msa0229770:intron | 20.0% |
| ! | ATGATTTAGAAGTTGCTAAA+AGG | - | chr2_2:1597160-1597179 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTTAGCTAAAAG+TGG | - | chr2_2:1597203-1597222 | None:intergenic | 25.0% |
| ! | AAACATTACCTTGAAATTGA+GGG | - | chr2_2:1597244-1597263 | None:intergenic | 25.0% |
| ! | TAAACATTACCTTGAAATTG+AGG | - | chr2_2:1597245-1597264 | None:intergenic | 25.0% |
| ! | TAGATTAGTGGTAAAATTGT+TGG | - | chr2_2:1597394-1597413 | None:intergenic | 25.0% |
| !!! | TCAATCCACTTTTACATAAA+TGG | - | chr2_2:1597498-1597517 | None:intergenic | 25.0% |
| !!! | GTTATTTCTATTGGTTGTTA+AGG | + | chr2_2:1598045-1598064 | Msa0229770:intron | 25.0% |
| !!! | TTTTGGAATGTTGTTTTCTA+GGG | + | chr2_2:1598068-1598087 | Msa0229770:intron | 25.0% |
| ! | TTCATTTGAATTCAATTTGC+AGG | + | chr2_2:1598842-1598861 | Msa0229770:intron | 25.0% |
| ! | TCATTTGAATTCAATTTGCA+GGG | + | chr2_2:1598843-1598862 | Msa0229770:intron | 25.0% |
| !! | TGAAATTCAAACCTTTTCTA+AGG | + | chr2_2:1598982-1599001 | Msa0229770:intron | 25.0% |
| ! | GAAAAGATGAATAAAAGCAA+TGG | - | chr2_2:1599008-1599027 | None:intergenic | 25.0% |
| !!! | CAGTCTTATTTTTGTTTTTC+TGG | + | chr2_2:1599141-1599160 | Msa0229770:intron | 25.0% |
| !! | TTTGACTTTCTTACAAAAGT+AGG | + | chr2_2:1599501-1599520 | Msa0229770:CDS | 25.0% |
| ! | AAAAGTAGGTTTATCAAAGT+TGG | + | chr2_2:1599515-1599534 | Msa0229770:CDS | 25.0% |
| ! | AAGTTTGGAAGTTAACAAAT+GGG | - | chr2_2:1599625-1599644 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGCTAAAAGTGGA+GGG | - | chr2_2:1597199-1597218 | None:intergenic | 30.0% |
| !!! | TTAGTTTTAGCTAAAAGTGG+AGG | - | chr2_2:1597200-1597219 | None:intergenic | 30.0% |
| GCTAAAACTAAAACTTCTCA+TGG | + | chr2_2:1597209-1597228 | Msa0229770:CDS | 30.0% | |
| TGGTAAAATTGTTGGAATCA+CGG | - | chr2_2:1597386-1597405 | None:intergenic | 30.0% | |
| TTAGTGCATGTTTAGATTAG+TGG | - | chr2_2:1597406-1597425 | None:intergenic | 30.0% | |
| AGGAGTTATTGTAAACATTG+AGG | + | chr2_2:1597880-1597899 | Msa0229770:CDS | 30.0% | |
| GCAAAATCAAAAGAATCCAT+AGG | - | chr2_2:1597908-1597927 | None:intergenic | 30.0% | |
| TAGATGCTTCATTATCACAA+TGG | + | chr2_2:1597936-1597955 | Msa0229770:CDS | 30.0% | |
| !! | TCTATTGGTTGTTAAGGTTT+TGG | + | chr2_2:1598051-1598070 | Msa0229770:intron | 30.0% |
| !!! | GTTTTGGAATGTTGTTTTCT+AGG | + | chr2_2:1598067-1598086 | Msa0229770:intron | 30.0% |
| TACATTACATCACATTCACA+AGG | - | chr2_2:1598199-1598218 | None:intergenic | 30.0% | |
| ATTTGAATCCAGCCTATAAA+AGG | - | chr2_2:1598235-1598254 | None:intergenic | 30.0% | |
| TATACAAGCATCAAGTGATT+TGG | - | chr2_2:1598272-1598291 | None:intergenic | 30.0% | |
| ATCACTTGATGCTTGTATAT+TGG | + | chr2_2:1598273-1598292 | Msa0229770:CDS | 30.0% | |
| ! | TTTTGTAGTCAATGCCAATA+TGG | + | chr2_2:1598355-1598374 | Msa0229770:CDS | 30.0% |
| ! | TTTGACTATGTTGGACATTT+TGG | + | chr2_2:1598550-1598569 | Msa0229770:intron | 30.0% |
| AAATATGTATGGTCACATCA+AGG | - | chr2_2:1598640-1598659 | None:intergenic | 30.0% | |
| !! | TTTTATTTGATAGGTCCTTG+TGG | + | chr2_2:1598694-1598713 | Msa0229770:intron | 30.0% |
| GAAAAAAATGGTAGATTCAG+CGG | + | chr2_2:1598722-1598741 | Msa0229770:CDS | 30.0% | |
| !! | TTGTTGAAGTTTTAGCATTC+AGG | + | chr2_2:1599043-1599062 | Msa0229770:CDS | 30.0% |
| TTTAGCATTCAGGTAAGATT+TGG | + | chr2_2:1599053-1599072 | Msa0229770:intron | 30.0% | |
| ! | ACATGCAATGTGAACATTTT+TGG | - | chr2_2:1599080-1599099 | None:intergenic | 30.0% |
| ! | AGTCAAATAGCTCATTTTGT+TGG | - | chr2_2:1599488-1599507 | None:intergenic | 30.0% |
| !! | TTTTGTGTTGATGTACACAT+GGG | - | chr2_2:1599595-1599614 | None:intergenic | 30.0% |
| GAAGTTTGGAAGTTAACAAA+TGG | - | chr2_2:1599626-1599645 | None:intergenic | 30.0% | |
| TCTATCATCCCTCAATTTCA+AGG | + | chr2_2:1597233-1597252 | Msa0229770:CDS | 35.0% | |
| GGGATCCATTTATGTAAAAG+TGG | + | chr2_2:1597490-1597509 | Msa0229770:intron | 35.0% | |
| TTCAACTTAGTTGTGGTGTT+TGG | - | chr2_2:1597626-1597645 | None:intergenic | 35.0% | |
| ! | TGTTTGGTTCAACTTAGTTG+TGG | - | chr2_2:1597633-1597652 | None:intergenic | 35.0% |
| !! | ACTAATTTGTGACCCCTTTT+AGG | + | chr2_2:1597737-1597756 | Msa0229770:intron | 35.0% |
| ACTGTTCTTGTAGCCTAAAA+GGG | - | chr2_2:1597753-1597772 | None:intergenic | 35.0% | |
| AACTGTTCTTGTAGCCTAAA+AGG | - | chr2_2:1597754-1597773 | None:intergenic | 35.0% | |
| !! | TTCTTTTCCCAAGAGCATAT+TGG | + | chr2_2:1597774-1597793 | Msa0229770:CDS | 35.0% |
| TGTAAACATTGAGGAACCTA+TGG | + | chr2_2:1597889-1597908 | Msa0229770:CDS | 35.0% | |
| ATGCTTCATTATCACAATGG+AGG | + | chr2_2:1597939-1597958 | Msa0229770:CDS | 35.0% | |
| ATTATCACAATGGAGGATAC+AGG | + | chr2_2:1597946-1597965 | Msa0229770:CDS | 35.0% | |
| !!! | TGTTGTTTTCTAGGGAAAGA+AGG | + | chr2_2:1598076-1598095 | Msa0229770:intron | 35.0% |
| !! | GTTGTTTTCTAGGGAAAGAA+GGG | + | chr2_2:1598077-1598096 | Msa0229770:intron | 35.0% |
| ACAAGATTTGAGTGTTCTCT+TGG | - | chr2_2:1598119-1598138 | None:intergenic | 35.0% | |
| AAGAGAACACTCAAATCTTG+TGG | + | chr2_2:1598118-1598137 | Msa0229770:CDS | 35.0% | |
| ! | CATTTTGCTGCTCCTTTTAT+AGG | + | chr2_2:1598220-1598239 | Msa0229770:intron | 35.0% |
| ! | AATCAGATTGAAGGTGTGTT+CGG | + | chr2_2:1598408-1598427 | Msa0229770:intron | 35.0% |
| !! | TGCCATTCTTGTTGTTTCAT+AGG | + | chr2_2:1598462-1598481 | Msa0229770:intron | 35.0% |
| AGCCTATGAAACAACAAGAA+TGG | - | chr2_2:1598467-1598486 | None:intergenic | 35.0% | |
| ! | AGGTTCATGAAAAGTACAAC+TGG | - | chr2_2:1598603-1598622 | None:intergenic | 35.0% |
| ! | AGTTGTACTTTTCATGAACC+TGG | + | chr2_2:1598602-1598621 | Msa0229770:intron | 35.0% |
| !!! | CATTTTTTTCCTGAACCACA+AGG | - | chr2_2:1598712-1598731 | None:intergenic | 35.0% |
| CTTGTGGTTCAGGAAAAAAA+TGG | + | chr2_2:1598710-1598729 | Msa0229770:CDS | 35.0% | |
| ! | AAAAGCAATGGCCTTAGAAA+AGG | - | chr2_2:1598996-1599015 | None:intergenic | 35.0% |
| TTATATGCATGTTGCAACCT+CGG | + | chr2_2:1599214-1599233 | Msa0229770:CDS | 35.0% | |
| ! | AGCTCATTTTGTTGGAGAAA+AGG | - | chr2_2:1599480-1599499 | None:intergenic | 35.0% |
| GTAGGTTTATCAAAGTTGGA+AGG | + | chr2_2:1599519-1599538 | Msa0229770:CDS | 35.0% | |
| !! | CTTTTGTGTTGATGTACACA+TGG | - | chr2_2:1599596-1599615 | None:intergenic | 35.0% |
| CTGTTCTTGTAGCCTAAAAG+GGG | - | chr2_2:1597752-1597771 | None:intergenic | 40.0% | |
| CTCATCCAATAAAGCTGAAG+AGG | - | chr2_2:1597804-1597823 | None:intergenic | 40.0% | |
| !! | CTCTTCAGCTTTATTGGATG+AGG | + | chr2_2:1597802-1597821 | Msa0229770:CDS | 40.0% |
| TTATTGGATGAGGAAGTGAG+AGG | + | chr2_2:1597812-1597831 | Msa0229770:CDS | 40.0% | |
| TGGATTACTCAAAGCTGTTG+AGG | + | chr2_2:1597847-1597866 | Msa0229770:CDS | 40.0% | |
| AAAGCTGTTGAGGATCAACA+TGG | + | chr2_2:1597857-1597876 | Msa0229770:CDS | 40.0% | |
| !! | AGTGATTTGGTTCAGCATGA+TGG | - | chr2_2:1598259-1598278 | None:intergenic | 40.0% |
| !! | CAAAAGCACCGATAGAAATG+CGG | - | chr2_2:1598340-1598359 | None:intergenic | 40.0% |
| TGTAGTCAATGCCAATATGG+AGG | + | chr2_2:1598358-1598377 | Msa0229770:CDS | 40.0% | |
| AGGATTACTGACCTCCATAT+TGG | - | chr2_2:1598372-1598391 | None:intergenic | 40.0% | |
| GAATGCTTATAGTCATGTGC+TGG | - | chr2_2:1598520-1598539 | None:intergenic | 40.0% | |
| !! | TCAAGGTAGATATTGACTCC+AGG | - | chr2_2:1598623-1598642 | None:intergenic | 40.0% |
| AATGGTAGATTCAGCGGTAA+AGG | + | chr2_2:1598728-1598747 | Msa0229770:CDS | 40.0% | |
| GATTCAGCGGTAAAGGAATA+TGG | + | chr2_2:1598735-1598754 | Msa0229770:CDS | 40.0% | |
| GGAATATGGAAATTGCCTAC+TGG | + | chr2_2:1598749-1598768 | Msa0229770:CDS | 40.0% | |
| TGAATTCAATTTGCAGGGTG+AGG | + | chr2_2:1598848-1598867 | Msa0229770:intron | 40.0% | |
| AGAGAAGTCAAAGAAGAGAC+AGG | + | chr2_2:1598891-1598910 | Msa0229770:CDS | 40.0% | |
| CTCTGAATGTTAAATGACCG+AGG | - | chr2_2:1599234-1599253 | None:intergenic | 40.0% | |
| GTCATTTAACATTCAGAGCC+AGG | + | chr2_2:1599236-1599255 | Msa0229770:CDS | 40.0% | |
| AATTCAGTGGATGGCAATTG+AGG | + | chr2_2:1599440-1599459 | Msa0229770:intron | 40.0% | |
| !! | AAGTTGGAAGGAAAGTACTC+AGG | + | chr2_2:1599531-1599550 | Msa0229770:CDS | 40.0% |
| AGGCAGACCAATATGCTCTT+GGG | - | chr2_2:1597784-1597803 | None:intergenic | 45.0% | |
| ! | GTCTGCCTCTTCAGCTTTAT+TGG | + | chr2_2:1597796-1597815 | Msa0229770:CDS | 45.0% |
| GTGAGAGGTAGATGTACTAC+TGG | + | chr2_2:1597827-1597846 | Msa0229770:CDS | 45.0% | |
| ! | TTGCTGCTCCTTTTATAGGC+TGG | + | chr2_2:1598224-1598243 | Msa0229770:intron | 45.0% |
| !! | GGAATGGTATCAGGAGTGTT+GGG | - | chr2_2:1598302-1598321 | None:intergenic | 45.0% |
| ! | AGGAATGGTATCAGGAGTGT+TGG | - | chr2_2:1598303-1598322 | None:intergenic | 45.0% |
| GCATTTGCAGGAATGGTATC+AGG | - | chr2_2:1598311-1598330 | None:intergenic | 45.0% | |
| !! | GTGAGAAGCATTTGCAGGAA+TGG | - | chr2_2:1598318-1598337 | None:intergenic | 45.0% |
| GCTTCTCACCGCATTTCTAT+CGG | + | chr2_2:1598329-1598348 | Msa0229770:CDS | 45.0% | |
| TGCTTATAGTCATGTGCTGG+TGG | - | chr2_2:1598517-1598536 | None:intergenic | 45.0% | |
| TTGATAGGTCCTTGTGGTTC+AGG | + | chr2_2:1598700-1598719 | Msa0229770:intron | 45.0% | |
| ACCTCATTAACAGCTCCAGT+AGG | - | chr2_2:1598767-1598786 | None:intergenic | 45.0% | |
| TTCAGAAATTGAGGCAGCTC+AGG | + | chr2_2:1599260-1599279 | Msa0229770:CDS | 45.0% | |
| !!! | TTATTTTATTTTTATTTGAT+AGG | + | chr2_2:1598685-1598704 | Msa0229770:intron | 5.0% |
| GAGGCAGACCAATATGCTCT+TGG | - | chr2_2:1597785-1597804 | None:intergenic | 50.0% | |
| GCTGTTGAGGATCAACATGG+AGG | + | chr2_2:1597860-1597879 | Msa0229770:CDS | 50.0% | |
| TCTAGGGAAAGAAGGGAGTG+TGG | + | chr2_2:1598084-1598103 | Msa0229770:intron | 50.0% | |
| TCTTGTGGCTTCTGCTGTTG+AGG | + | chr2_2:1598133-1598152 | Msa0229770:CDS | 50.0% | |
| !! | ATGCGGTGAGAAGCATTTGC+AGG | - | chr2_2:1598323-1598342 | None:intergenic | 50.0% |
| TGTCTGACACCGAGACATGT+TGG | + | chr2_2:1598431-1598450 | Msa0229770:intron | 50.0% | |
| GTCTGACACCGAGACATGTT+GGG | + | chr2_2:1598432-1598451 | Msa0229770:intron | 50.0% | |
| ACGAGACACCCAACATGTCT+CGG | - | chr2_2:1598443-1598462 | None:intergenic | 50.0% | |
| GCCTACTGGAGCTGTTAATG+AGG | + | chr2_2:1598763-1598782 | Msa0229770:CDS | 50.0% | |
| GAGCCAGGCTTCAGAAATTG+AGG | + | chr2_2:1599251-1599270 | Msa0229770:CDS | 50.0% | |
| !! | CTGCCTCAATTTCTGAAGCC+TGG | - | chr2_2:1599257-1599276 | None:intergenic | 50.0% |
| GTACACATGGGACTTGCAAG+AGG | - | chr2_2:1599583-1599602 | None:intergenic | 50.0% | |
| GTGGAGGGACAGAAGATGTG+AGG | - | chr2_2:1597184-1597203 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1597116 | 1599650 | 1597116 | ID=Msa0229770;Name=Msa0229770 |
| chr2_2 | mRNA | 1597116 | 1599650 | 1597116 | ID=Msa0229770-mRNA-1;Parent=Msa0229770;Name=Msa0229770-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.62|0.33|1|1|1|9|0|342 |
| chr2_2 | exon | 1597116 | 1597254 | 1597116 | ID=Msa0229770-mRNA-1:exon:559;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1597759 | 1597967 | 1597759 | ID=Msa0229770-mRNA-1:exon:560;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1598089 | 1598154 | 1598089 | ID=Msa0229770-mRNA-1:exon:561;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1598242 | 1598379 | 1598242 | ID=Msa0229770-mRNA-1:exon:562;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1598707 | 1598784 | 1598707 | ID=Msa0229770-mRNA-1:exon:563;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1598864 | 1598914 | 1598864 | ID=Msa0229770-mRNA-1:exon:564;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1599030 | 1599064 | 1599030 | ID=Msa0229770-mRNA-1:exon:565;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1599173 | 1599281 | 1599173 | ID=Msa0229770-mRNA-1:exon:566;Parent=Msa0229770-mRNA-1 |
| chr2_2 | exon | 1599447 | 1599650 | 1599447 | ID=Msa0229770-mRNA-1:exon:567;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1597116 | 1597254 | 1597116 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1597759 | 1597967 | 1597759 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1598089 | 1598154 | 1598089 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1598242 | 1598379 | 1598242 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1598707 | 1598784 | 1598707 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1598864 | 1598914 | 1598864 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1599030 | 1599064 | 1599030 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1599173 | 1599281 | 1599173 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| chr2_2 | CDS | 1599447 | 1599650 | 1599447 | ID=Msa0229770-mRNA-1:cds;Parent=Msa0229770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
