Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438700 | XP_003601536.2 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438700 | sp|Q94B74|NUDT2_ARATH | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 6.95e-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438700 | G7J8V6 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229770 | Msa0438700 | 0.982159 | 2.215106e-154 | -8.615850e-47 |
| Msa0387720 | Msa0438700 | 0.872677 | 2.645824e-67 | -8.615850e-47 |
| Msa0438700 | Msa1101590 | 0.874101 | 8.786238e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438700 | MtrunA17_Chr3g0120821 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Msa0438700 | MtrunA17_Chr8g0383231 | 64.093 | 259 | 91 | 2 | 83 | 339 | 23 | 281 | 1.32e-122 | 354 |
| Msa0438700 | MtrunA17_Chr3g0102431 | 57.977 | 257 | 106 | 1 | 78 | 332 | 25 | 281 | 9.41e-105 | 308 |
| Msa0438700 | MtrunA17_Chr2g0290501 | 53.150 | 254 | 117 | 1 | 78 | 329 | 71 | 324 | 1.20e-104 | 310 |
| Msa0438700 | MtrunA17_Chr4g0076351 | 54.475 | 257 | 112 | 3 | 78 | 329 | 12 | 268 | 3.67e-103 | 304 |
| Msa0438700 | MtrunA17_Chr4g0055811 | 50.000 | 238 | 118 | 1 | 78 | 314 | 91 | 328 | 8.17e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0438700 | AT5G47650.5 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0438700 | AT5G47650.3 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0438700 | AT5G47650.1 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0438700 | AT5G47650.4 | 56.031 | 257 | 113 | 0 | 76 | 332 | 63 | 319 | 3.36e-109 | 322 |
| Msa0438700 | AT5G47650.2 | 56.031 | 257 | 113 | 0 | 76 | 332 | 64 | 320 | 4.97e-109 | 321 |
| Msa0438700 | AT4G25434.10 | 54.651 | 258 | 115 | 1 | 78 | 333 | 19 | 276 | 4.40e-102 | 302 |
| Msa0438700 | AT4G25434.1 | 53.101 | 258 | 114 | 2 | 78 | 333 | 19 | 271 | 1.62e-96 | 288 |
| Msa0438700 | AT4G25434.8 | 49.474 | 285 | 115 | 2 | 78 | 333 | 19 | 303 | 3.31e-96 | 288 |
| Msa0438700 | AT4G12720.2 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0438700 | AT4G12720.3 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0438700 | AT4G12720.1 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0438700 | AT2G04450.1 | 54.135 | 266 | 117 | 5 | 78 | 339 | 10 | 274 | 1.17e-92 | 278 |
| Msa0438700 | AT2G04430.2 | 50.943 | 265 | 121 | 5 | 78 | 337 | 10 | 270 | 6.81e-91 | 273 |
| Msa0438700 | AT4G25434.2 | 48.070 | 285 | 114 | 3 | 78 | 333 | 19 | 298 | 1.05e-90 | 274 |
| Msa0438700 | AT2G04430.1 | 50.943 | 265 | 121 | 5 | 78 | 337 | 29 | 289 | 1.54e-90 | 273 |
| Msa0438700 | AT4G25434.7 | 61.616 | 198 | 76 | 0 | 78 | 275 | 19 | 216 | 1.39e-89 | 268 |
| Msa0438700 | AT4G12720.4 | 46.078 | 306 | 122 | 4 | 78 | 340 | 10 | 315 | 1.33e-87 | 266 |
| Msa0438700 | AT5G47240.1 | 48.921 | 278 | 135 | 5 | 62 | 335 | 82 | 356 | 1.12e-85 | 263 |
| Msa0438700 | AT4G25434.9 | 59.596 | 198 | 75 | 1 | 78 | 275 | 19 | 211 | 4.05e-84 | 254 |
| Msa0438700 | AT4G25434.6 | 54.222 | 225 | 76 | 1 | 78 | 275 | 19 | 243 | 4.80e-84 | 254 |
| Msa0438700 | AT5G47240.2 | 44.625 | 307 | 134 | 6 | 62 | 335 | 82 | 385 | 7.42e-80 | 249 |
| Msa0438700 | AT4G12720.5 | 57.500 | 200 | 83 | 2 | 78 | 275 | 10 | 209 | 2.29e-77 | 236 |
| Msa0438700 | AT4G25434.3 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0438700 | AT4G25434.5 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0438700 | AT4G25434.12 | 63.354 | 161 | 59 | 0 | 78 | 238 | 19 | 179 | 5.97e-73 | 226 |
| Msa0438700 | AT4G25434.4 | 52.500 | 200 | 88 | 2 | 136 | 333 | 32 | 226 | 1.23e-70 | 220 |
| Msa0438700 | AT4G25434.11 | 54.255 | 188 | 59 | 1 | 78 | 238 | 19 | 206 | 3.33e-67 | 212 |
| Msa0438700 | AT4G12720.6 | 51.562 | 192 | 90 | 3 | 152 | 340 | 1 | 192 | 7.98e-64 | 201 |
| Msa0438700 | AT4G25434.13 | 47.393 | 211 | 82 | 2 | 152 | 333 | 1 | 211 | 9.26e-62 | 197 |
| Msa0438700 | AT2G04440.1 | 54.348 | 138 | 61 | 1 | 78 | 213 | 10 | 147 | 1.75e-45 | 155 |
Find 60 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCCTCTTCAGCTTTAT+TGG | 0.138830 | 3_3:+3466730 | Msa0438700:CDS |
| ATCACTTGATGCTTGTATAT+TGG | 0.219532 | 3_3:+3467207 | Msa0438700:CDS |
| TTGATAGGTCCTTGTGGTTC+AGG | 0.282859 | 3_3:+3467634 | Msa0438700:intron |
| ATGATTTAGAAGTTGCTAAA+AGG | 0.301913 | 3_3:-3466095 | None:intergenic |
| GATTCAGCGGTAAAGGAATA+TGG | 0.321175 | 3_3:+3467669 | Msa0438700:CDS |
| AGTTCAAGATTAGTGAAGTT+TGG | 0.337473 | 3_3:-3468571 | None:intergenic |
| TATACAAGCATCAAGTGATT+TGG | 0.351532 | 3_3:-3467203 | None:intergenic |
| AAAAGTAGGTTTATCAAAGT+TGG | 0.377713 | 3_3:+3468449 | Msa0438700:CDS |
| GCATTTGCAGGAATGGTATC+AGG | 0.387309 | 3_3:-3467242 | None:intergenic |
| GAAGTTTGGAAGTTAACAAA+TGG | 0.394809 | 3_3:-3468557 | None:intergenic |
| TTTGACTTTCTTACAAAAGT+AGG | 0.402294 | 3_3:+3468435 | Msa0438700:CDS |
| TAAACATTACCTTGAAATTG+AGG | 0.413912 | 3_3:-3466180 | None:intergenic |
| AGGATTACTGACCTCCATAT+TGG | 0.421202 | 3_3:-3467303 | None:intergenic |
| TGTAAACATTGAGGAACCTA+TGG | 0.430629 | 3_3:+3466823 | Msa0438700:CDS |
| ACAAGATTTGAGTGTTCTCT+TGG | 0.433589 | 3_3:-3467050 | None:intergenic |
| GTCATTTAACATTCAGAGCC+AGG | 0.434886 | 3_3:+3468170 | Msa0438700:CDS |
| CTGCCTCAATTTCTGAAGCC+TGG | 0.437999 | 3_3:-3468188 | None:intergenic |
| AATTCAGTGGATGGCAATTG+AGG | 0.454069 | 3_3:+3468374 | Msa0438700:intron |
| GAGGCAGACCAATATGCTCT+TGG | 0.461247 | 3_3:-3466716 | None:intergenic |
| TTCAGAAATTGAGGCAGCTC+AGG | 0.463477 | 3_3:+3468194 | Msa0438700:CDS |
| AATGGTAGATTCAGCGGTAA+AGG | 0.464011 | 3_3:+3467662 | Msa0438700:CDS |
| CTCTTCAGCTTTATTGGATG+AGG | 0.465200 | 3_3:+3466736 | Msa0438700:CDS |
| AAACATTACCTTGAAATTGA+GGG | 0.467955 | 3_3:-3466179 | None:intergenic |
| ATTATCACAATGGAGGATAC+AGG | 0.479874 | 3_3:+3466880 | Msa0438700:CDS |
| ATGCGGTGAGAAGCATTTGC+AGG | 0.480367 | 3_3:-3467254 | None:intergenic |
| AAGTTTGGAAGTTAACAAAT+GGG | 0.487670 | 3_3:-3468556 | None:intergenic |
| TCTATCATCCCTCAATTTCA+AGG | 0.489999 | 3_3:+3466171 | Msa0438700:CDS |
| GAGCCAGGCTTCAGAAATTG+AGG | 0.505160 | 3_3:+3468185 | Msa0438700:CDS |
| GGAATGGTATCAGGAGTGTT+GGG | 0.509248 | 3_3:-3467233 | None:intergenic |
| AGGCAGACCAATATGCTCTT+GGG | 0.509293 | 3_3:-3466715 | None:intergenic |
| GTGAGAGGTAGATGTACTAC+TGG | 0.512908 | 3_3:+3466761 | Msa0438700:CDS |
| AGAGAAGTCAAAGAAGAGAC+AGG | 0.513614 | 3_3:+3467825 | Msa0438700:CDS |
| AGTGATTTGGTTCAGCATGA+TGG | 0.514943 | 3_3:-3467190 | None:intergenic |
| GGAATATGGAAATTGCCTAC+TGG | 0.514957 | 3_3:+3467683 | Msa0438700:CDS |
| AGGAATGGTATCAGGAGTGT+TGG | 0.517783 | 3_3:-3467234 | None:intergenic |
| GCTAAAACTAAAACTTCTCA+TGG | 0.518230 | 3_3:+3466147 | Msa0438700:CDS |
| TTATATGCATGTTGCAACCT+CGG | 0.518990 | 3_3:+3468148 | Msa0438700:CDS |
| GTGAGAAGCATTTGCAGGAA+TGG | 0.520377 | 3_3:-3467249 | None:intergenic |
| CTCATCCAATAAAGCTGAAG+AGG | 0.520600 | 3_3:-3466735 | None:intergenic |
| TCTTGTGGCTTCTGCTGTTG+AGG | 0.529767 | 3_3:+3467067 | Msa0438700:CDS |
| GCTTCTCACCGCATTTCTAT+CGG | 0.534615 | 3_3:+3467263 | Msa0438700:CDS |
| GTAGGTTTATCAAAGTTGGA+AGG | 0.564992 | 3_3:+3468453 | Msa0438700:CDS |
| AGGAGTTATTGTAAACATTG+AGG | 0.569638 | 3_3:+3466814 | Msa0438700:CDS |
| GCCTACTGGAGCTGTTAATG+AGG | 0.578161 | 3_3:+3467697 | Msa0438700:CDS |
| GCAAAATCAAAAGAATCCAT+AGG | 0.578220 | 3_3:-3466839 | None:intergenic |
| TTATTGGATGAGGAAGTGAG+AGG | 0.590204 | 3_3:+3466746 | Msa0438700:CDS |
| GTGGAGGGACAGAAGATGTG+AGG | 0.596463 | 3_3:-3466119 | None:intergenic |
| TGGATTACTCAAAGCTGTTG+AGG | 0.604757 | 3_3:+3466781 | Msa0438700:CDS |
| AAGAGAACACTCAAATCTTG+TGG | 0.611816 | 3_3:+3467052 | Msa0438700:CDS |
| TCTAGGGAAAGAAGGGAGTG+TGG | 0.616092 | 3_3:+3467018 | Msa0438700:intron |
| TGTAGTCAATGCCAATATGG+AGG | 0.628749 | 3_3:+3467292 | Msa0438700:CDS |
| AAGTTGGAAGGAAAGTACTC+AGG | 0.639796 | 3_3:+3468465 | Msa0438700:CDS |
| GTACACATGGGACTTGCAAG+AGG | 0.641683 | 3_3:-3468514 | None:intergenic |
| ATGCTTCATTATCACAATGG+AGG | 0.642405 | 3_3:+3466873 | Msa0438700:CDS |
| TAGATGCTTCATTATCACAA+TGG | 0.672794 | 3_3:+3466870 | Msa0438700:CDS |
| AAAGCTGTTGAGGATCAACA+TGG | 0.673299 | 3_3:+3466791 | Msa0438700:CDS |
| CTCTGAATGTTAAATGACCG+AGG | 0.679928 | 3_3:-3468165 | None:intergenic |
| ACCTCATTAACAGCTCCAGT+AGG | 0.685283 | 3_3:-3467698 | None:intergenic |
| CAAAAGCACCGATAGAAATG+CGG | 0.718623 | 3_3:-3467271 | None:intergenic |
| GCTGTTGAGGATCAACATGG+AGG | 0.750639 | 3_3:+3466794 | Msa0438700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTGAAAAATAATT+TGG | - | chr3_3:3466594-3466613 | None:intergenic | 10.0% |
| !! | GATTAATAAAAAAATATAGA+AGG | - | chr3_3:3467326-3467345 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAAAAATTCAG+TGG | + | chr3_3:3468361-3468380 | Msa0438700:intron | 10.0% |
| !! | TCCTTAAAATTAAGAAAAAT+TGG | + | chr3_3:3466924-3466943 | Msa0438700:intron | 15.0% |
| !!! | TCCAATTTTTCTTAATTTTA+AGG | - | chr3_3:3466928-3466947 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGTTATTTCTAT+TGG | + | chr3_3:3466970-3466989 | Msa0438700:intron | 15.0% |
| !!! | TTTTTTATTAATCAGATTGA+AGG | + | chr3_3:3467333-3467352 | Msa0438700:intron | 15.0% |
| !! | AAAAATTTATTTGACTATGT+TGG | + | chr3_3:3467475-3467494 | Msa0438700:intron | 15.0% |
| !! | AATATGTAAAACTAAAGTAA+TGG | - | chr3_3:3468227-3468246 | None:intergenic | 15.0% |
| !!! | TTTAAAGTTTCACAAAATCA+CGG | - | chr3_3:3466269-3466288 | None:intergenic | 20.0% |
| !!! | TTAAAGTGTTCATTTTGTTA+AGG | + | chr3_3:3466284-3466303 | Msa0438700:intron | 20.0% |
| !!! | TAAAGTGTTCATTTTGTTAA+GGG | + | chr3_3:3466285-3466304 | Msa0438700:intron | 20.0% |
| !!! | TCAATCCATTTTTACATAAA+TGG | - | chr3_3:3466430-3466449 | None:intergenic | 20.0% |
| !!! | AGCAAAGTTATTTTTCAATA+TGG | + | chr3_3:3466619-3466638 | Msa0438700:intron | 20.0% |
| !! | TACACATTAAGAAATATGTA+TGG | - | chr3_3:3467585-3467604 | None:intergenic | 20.0% |
| !! | AAGGTTTGAATTTCAAAATA+TGG | - | chr3_3:3467911-3467930 | None:intergenic | 20.0% |
| !! | TGTTCGAATATTACTATATT+TGG | + | chr3_3:3468034-3468053 | Msa0438700:intron | 20.0% |
| !! | AAAACTCACATTAAATGAAT+TGG | - | chr3_3:3468340-3468359 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAAATTCAGTGGA+TGG | + | chr3_3:3468365-3468384 | Msa0438700:intron | 20.0% |
| ! | ATGATTTAGAAGTTGCTAAA+AGG | - | chr3_3:3466098-3466117 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTTAGCTAAAAG+TGG | - | chr3_3:3466141-3466160 | None:intergenic | 25.0% |
| ! | AAACATTACCTTGAAATTGA+GGG | - | chr3_3:3466182-3466201 | None:intergenic | 25.0% |
| ! | TAAACATTACCTTGAAATTG+AGG | - | chr3_3:3466183-3466202 | None:intergenic | 25.0% |
| ! | GTGATCCATTTATGTAAAAA+TGG | + | chr3_3:3466422-3466441 | Msa0438700:intron | 25.0% |
| ! | TTAGTACTTGAATAATGCTT+AGG | - | chr3_3:3466656-3466675 | None:intergenic | 25.0% |
| !!! | GTTATTTCTATTGGTTGTTA+AGG | + | chr3_3:3466979-3466998 | Msa0438700:intron | 25.0% |
| !!! | TTTTGGAATGTTGTTTTCTA+GGG | + | chr3_3:3467002-3467021 | Msa0438700:intron | 25.0% |
| ! | TTCATTTGAATTCAATTTGC+AGG | + | chr3_3:3467776-3467795 | Msa0438700:intron | 25.0% |
| ! | TCATTTGAATTCAATTTGCA+GGG | + | chr3_3:3467777-3467796 | Msa0438700:intron | 25.0% |
| !! | TGAAATTCAAACCTTTTCTA+AGG | + | chr3_3:3467916-3467935 | Msa0438700:intron | 25.0% |
| ! | GAAAAGATGAATAAAAGCAA+TGG | - | chr3_3:3467942-3467961 | None:intergenic | 25.0% |
| !!! | CAGTCTTATTTTTGTTTTTC+TGG | + | chr3_3:3468075-3468094 | Msa0438700:intron | 25.0% |
| !! | TTTGACTTTCTTACAAAAGT+AGG | + | chr3_3:3468435-3468454 | Msa0438700:CDS | 25.0% |
| ! | AAAAGTAGGTTTATCAAAGT+TGG | + | chr3_3:3468449-3468468 | Msa0438700:CDS | 25.0% |
| ! | AAGTTTGGAAGTTAACAAAT+GGG | - | chr3_3:3468559-3468578 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGCTAAAAGTGGA+GGG | - | chr3_3:3466137-3466156 | None:intergenic | 30.0% |
| !!! | TTAGTTTTAGCTAAAAGTGG+AGG | - | chr3_3:3466138-3466157 | None:intergenic | 30.0% |
| GCTAAAACTAAAACTTCTCA+TGG | + | chr3_3:3466147-3466166 | Msa0438700:CDS | 30.0% | |
| ACATGCACTAAGATTATGTT+TGG | + | chr3_3:3466347-3466366 | Msa0438700:intron | 30.0% | |
| AGGAGTTATTGTAAACATTG+AGG | + | chr3_3:3466814-3466833 | Msa0438700:CDS | 30.0% | |
| GCAAAATCAAAAGAATCCAT+AGG | - | chr3_3:3466842-3466861 | None:intergenic | 30.0% | |
| TAGATGCTTCATTATCACAA+TGG | + | chr3_3:3466870-3466889 | Msa0438700:CDS | 30.0% | |
| !! | TCTATTGGTTGTTAAGGTTT+TGG | + | chr3_3:3466985-3467004 | Msa0438700:intron | 30.0% |
| !!! | GTTTTGGAATGTTGTTTTCT+AGG | + | chr3_3:3467001-3467020 | Msa0438700:intron | 30.0% |
| TACATTACATCACATTCACA+AGG | - | chr3_3:3467133-3467152 | None:intergenic | 30.0% | |
| ATTTGAATCCAGCCTATAAA+AGG | - | chr3_3:3467169-3467188 | None:intergenic | 30.0% | |
| TATACAAGCATCAAGTGATT+TGG | - | chr3_3:3467206-3467225 | None:intergenic | 30.0% | |
| ATCACTTGATGCTTGTATAT+TGG | + | chr3_3:3467207-3467226 | Msa0438700:CDS | 30.0% | |
| ! | TTTTGTAGTCAATGCCAATA+TGG | + | chr3_3:3467289-3467308 | Msa0438700:CDS | 30.0% |
| ! | TTTGACTATGTTGGACATTT+TGG | + | chr3_3:3467484-3467503 | Msa0438700:intron | 30.0% |
| AAATATGTATGGTCACATCA+AGG | - | chr3_3:3467574-3467593 | None:intergenic | 30.0% | |
| !! | TTTTATTTGATAGGTCCTTG+TGG | + | chr3_3:3467628-3467647 | Msa0438700:intron | 30.0% |
| GAAAAAAATGGTAGATTCAG+CGG | + | chr3_3:3467656-3467675 | Msa0438700:CDS | 30.0% | |
| !! | TTGTTGAAGTTTTAGCATTC+AGG | + | chr3_3:3467977-3467996 | Msa0438700:CDS | 30.0% |
| TTTAGCATTCAGGTAAGATT+TGG | + | chr3_3:3467987-3468006 | Msa0438700:intron | 30.0% | |
| ! | ACATGCAATGTGAACATTTT+TGG | - | chr3_3:3468014-3468033 | None:intergenic | 30.0% |
| ! | AGTCAAATAGCTCATTTTGT+TGG | - | chr3_3:3468422-3468441 | None:intergenic | 30.0% |
| !! | TTTTGTGTTGATGTACACAT+GGG | - | chr3_3:3468529-3468548 | None:intergenic | 30.0% |
| GAAGTTTGGAAGTTAACAAA+TGG | - | chr3_3:3468560-3468579 | None:intergenic | 30.0% | |
| TCTATCATCCCTCAATTTCA+AGG | + | chr3_3:3466171-3466190 | Msa0438700:CDS | 35.0% | |
| TGAATTAGTGGTGAAACTGT+TGG | - | chr3_3:3466326-3466345 | None:intergenic | 35.0% | |
| TTAGTGCATGTCTGAATTAG+TGG | - | chr3_3:3466338-3466357 | None:intergenic | 35.0% | |
| !!! | CCAACATTGATTTTGTGTCA+AGG | - | chr3_3:3466523-3466542 | None:intergenic | 35.0% |
| CCTTGACACAAAATCAATGT+TGG | + | chr3_3:3466520-3466539 | Msa0438700:intron | 35.0% | |
| TGATTCAACTTAGAGTTGTG+TGG | - | chr3_3:3466563-3466582 | None:intergenic | 35.0% | |
| !! | ACTAATTTGTGACCCCTTTT+AGG | + | chr3_3:3466671-3466690 | Msa0438700:intron | 35.0% |
| ACTGTTCTTGTAGCCTAAAA+GGG | - | chr3_3:3466687-3466706 | None:intergenic | 35.0% | |
| AACTGTTCTTGTAGCCTAAA+AGG | - | chr3_3:3466688-3466707 | None:intergenic | 35.0% | |
| !! | TTCTTTTCCCAAGAGCATAT+TGG | + | chr3_3:3466708-3466727 | Msa0438700:CDS | 35.0% |
| TGTAAACATTGAGGAACCTA+TGG | + | chr3_3:3466823-3466842 | Msa0438700:CDS | 35.0% | |
| ATGCTTCATTATCACAATGG+AGG | + | chr3_3:3466873-3466892 | Msa0438700:CDS | 35.0% | |
| ATTATCACAATGGAGGATAC+AGG | + | chr3_3:3466880-3466899 | Msa0438700:CDS | 35.0% | |
| !!! | TGTTGTTTTCTAGGGAAAGA+AGG | + | chr3_3:3467010-3467029 | Msa0438700:intron | 35.0% |
| !! | GTTGTTTTCTAGGGAAAGAA+GGG | + | chr3_3:3467011-3467030 | Msa0438700:intron | 35.0% |
| ACAAGATTTGAGTGTTCTCT+TGG | - | chr3_3:3467053-3467072 | None:intergenic | 35.0% | |
| AAGAGAACACTCAAATCTTG+TGG | + | chr3_3:3467052-3467071 | Msa0438700:CDS | 35.0% | |
| ! | CATTTTGCTGCTCCTTTTAT+AGG | + | chr3_3:3467154-3467173 | Msa0438700:intron | 35.0% |
| ! | AATCAGATTGAAGGTGTGTT+CGG | + | chr3_3:3467342-3467361 | Msa0438700:intron | 35.0% |
| !! | TGCCATTCTTGTTGTTTCAT+AGG | + | chr3_3:3467396-3467415 | Msa0438700:intron | 35.0% |
| AGCCTATGAAACAACAAGAA+TGG | - | chr3_3:3467401-3467420 | None:intergenic | 35.0% | |
| ! | AGGTTCATGAAAAGTACAAC+TGG | - | chr3_3:3467537-3467556 | None:intergenic | 35.0% |
| ! | AGTTGTACTTTTCATGAACC+TGG | + | chr3_3:3467536-3467555 | Msa0438700:intron | 35.0% |
| !!! | CATTTTTTTCCTGAACCACA+AGG | - | chr3_3:3467646-3467665 | None:intergenic | 35.0% |
| CTTGTGGTTCAGGAAAAAAA+TGG | + | chr3_3:3467644-3467663 | Msa0438700:CDS | 35.0% | |
| ! | AAAAGCAATGGCCTTAGAAA+AGG | - | chr3_3:3467930-3467949 | None:intergenic | 35.0% |
| TTATATGCATGTTGCAACCT+CGG | + | chr3_3:3468148-3468167 | Msa0438700:CDS | 35.0% | |
| ! | AGCTCATTTTGTTGGAGAAA+AGG | - | chr3_3:3468414-3468433 | None:intergenic | 35.0% |
| GTAGGTTTATCAAAGTTGGA+AGG | + | chr3_3:3468453-3468472 | Msa0438700:CDS | 35.0% | |
| !! | CTTTTGTGTTGATGTACACA+TGG | - | chr3_3:3468530-3468549 | None:intergenic | 35.0% |
| ACTTAGAGTTGTGTGGTGTT+TGG | - | chr3_3:3466556-3466575 | None:intergenic | 40.0% | |
| CTGTTCTTGTAGCCTAAAAG+GGG | - | chr3_3:3466686-3466705 | None:intergenic | 40.0% | |
| CTCATCCAATAAAGCTGAAG+AGG | - | chr3_3:3466738-3466757 | None:intergenic | 40.0% | |
| !! | CTCTTCAGCTTTATTGGATG+AGG | + | chr3_3:3466736-3466755 | Msa0438700:CDS | 40.0% |
| TTATTGGATGAGGAAGTGAG+AGG | + | chr3_3:3466746-3466765 | Msa0438700:CDS | 40.0% | |
| TGGATTACTCAAAGCTGTTG+AGG | + | chr3_3:3466781-3466800 | Msa0438700:CDS | 40.0% | |
| AAAGCTGTTGAGGATCAACA+TGG | + | chr3_3:3466791-3466810 | Msa0438700:CDS | 40.0% | |
| !! | AGTGATTTGGTTCAGCATGA+TGG | - | chr3_3:3467193-3467212 | None:intergenic | 40.0% |
| !! | CAAAAGCACCGATAGAAATG+CGG | - | chr3_3:3467274-3467293 | None:intergenic | 40.0% |
| TGTAGTCAATGCCAATATGG+AGG | + | chr3_3:3467292-3467311 | Msa0438700:CDS | 40.0% | |
| AGGATTACTGACCTCCATAT+TGG | - | chr3_3:3467306-3467325 | None:intergenic | 40.0% | |
| GAATGCTTATAGTCATGTGC+TGG | - | chr3_3:3467454-3467473 | None:intergenic | 40.0% | |
| !! | TCAAGGTAGATATTGACTCC+AGG | - | chr3_3:3467557-3467576 | None:intergenic | 40.0% |
| AATGGTAGATTCAGCGGTAA+AGG | + | chr3_3:3467662-3467681 | Msa0438700:CDS | 40.0% | |
| GATTCAGCGGTAAAGGAATA+TGG | + | chr3_3:3467669-3467688 | Msa0438700:CDS | 40.0% | |
| GGAATATGGAAATTGCCTAC+TGG | + | chr3_3:3467683-3467702 | Msa0438700:CDS | 40.0% | |
| TGAATTCAATTTGCAGGGTG+AGG | + | chr3_3:3467782-3467801 | Msa0438700:intron | 40.0% | |
| AGAGAAGTCAAAGAAGAGAC+AGG | + | chr3_3:3467825-3467844 | Msa0438700:CDS | 40.0% | |
| CTCTGAATGTTAAATGACCG+AGG | - | chr3_3:3468168-3468187 | None:intergenic | 40.0% | |
| GTCATTTAACATTCAGAGCC+AGG | + | chr3_3:3468170-3468189 | Msa0438700:CDS | 40.0% | |
| AATTCAGTGGATGGCAATTG+AGG | + | chr3_3:3468374-3468393 | Msa0438700:intron | 40.0% | |
| !! | AAGTTGGAAGGAAAGTACTC+AGG | + | chr3_3:3468465-3468484 | Msa0438700:CDS | 40.0% |
| AGGCAGACCAATATGCTCTT+GGG | - | chr3_3:3466718-3466737 | None:intergenic | 45.0% | |
| ! | GTCTGCCTCTTCAGCTTTAT+TGG | + | chr3_3:3466730-3466749 | Msa0438700:CDS | 45.0% |
| GTGAGAGGTAGATGTACTAC+TGG | + | chr3_3:3466761-3466780 | Msa0438700:CDS | 45.0% | |
| ! | TTGCTGCTCCTTTTATAGGC+TGG | + | chr3_3:3467158-3467177 | Msa0438700:intron | 45.0% |
| !! | GGAATGGTATCAGGAGTGTT+GGG | - | chr3_3:3467236-3467255 | None:intergenic | 45.0% |
| ! | AGGAATGGTATCAGGAGTGT+TGG | - | chr3_3:3467237-3467256 | None:intergenic | 45.0% |
| GCATTTGCAGGAATGGTATC+AGG | - | chr3_3:3467245-3467264 | None:intergenic | 45.0% | |
| !! | GTGAGAAGCATTTGCAGGAA+TGG | - | chr3_3:3467252-3467271 | None:intergenic | 45.0% |
| GCTTCTCACCGCATTTCTAT+CGG | + | chr3_3:3467263-3467282 | Msa0438700:CDS | 45.0% | |
| TGCTTATAGTCATGTGCTGG+TGG | - | chr3_3:3467451-3467470 | None:intergenic | 45.0% | |
| TTGATAGGTCCTTGTGGTTC+AGG | + | chr3_3:3467634-3467653 | Msa0438700:intron | 45.0% | |
| ACCTCATTAACAGCTCCAGT+AGG | - | chr3_3:3467701-3467720 | None:intergenic | 45.0% | |
| TTCAGAAATTGAGGCAGCTC+AGG | + | chr3_3:3468194-3468213 | Msa0438700:CDS | 45.0% | |
| !!! | TTATTTTATTTTTATTTGAT+AGG | + | chr3_3:3467619-3467638 | Msa0438700:intron | 5.0% |
| GAGGCAGACCAATATGCTCT+TGG | - | chr3_3:3466719-3466738 | None:intergenic | 50.0% | |
| GCTGTTGAGGATCAACATGG+AGG | + | chr3_3:3466794-3466813 | Msa0438700:CDS | 50.0% | |
| TCTAGGGAAAGAAGGGAGTG+TGG | + | chr3_3:3467018-3467037 | Msa0438700:intron | 50.0% | |
| TCTTGTGGCTTCTGCTGTTG+AGG | + | chr3_3:3467067-3467086 | Msa0438700:CDS | 50.0% | |
| !! | ATGCGGTGAGAAGCATTTGC+AGG | - | chr3_3:3467257-3467276 | None:intergenic | 50.0% |
| TGTCTGACACCGAGACATGT+TGG | + | chr3_3:3467365-3467384 | Msa0438700:intron | 50.0% | |
| GTCTGACACCGAGACATGTT+GGG | + | chr3_3:3467366-3467385 | Msa0438700:intron | 50.0% | |
| ACGAGACACCCAACATGTCT+CGG | - | chr3_3:3467377-3467396 | None:intergenic | 50.0% | |
| GCCTACTGGAGCTGTTAATG+AGG | + | chr3_3:3467697-3467716 | Msa0438700:CDS | 50.0% | |
| GAGCCAGGCTTCAGAAATTG+AGG | + | chr3_3:3468185-3468204 | Msa0438700:CDS | 50.0% | |
| !! | CTGCCTCAATTTCTGAAGCC+TGG | - | chr3_3:3468191-3468210 | None:intergenic | 50.0% |
| GTACACATGGGACTTGCAAG+AGG | - | chr3_3:3468517-3468536 | None:intergenic | 50.0% | |
| GTGGAGGGACAGAAGATGTG+AGG | - | chr3_3:3466122-3466141 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 3466054 | 3468584 | 3466054 | ID=Msa0438700;Name=Msa0438700 |
| chr3_3 | mRNA | 3466054 | 3468584 | 3466054 | ID=Msa0438700-mRNA-1;Parent=Msa0438700;Name=Msa0438700-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.62|0.33|1|1|1|9|0|342 |
| chr3_3 | exon | 3466054 | 3466192 | 3466054 | ID=Msa0438700-mRNA-1:exon:770;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3466693 | 3466901 | 3466693 | ID=Msa0438700-mRNA-1:exon:771;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3467023 | 3467088 | 3467023 | ID=Msa0438700-mRNA-1:exon:772;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3467176 | 3467313 | 3467176 | ID=Msa0438700-mRNA-1:exon:773;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3467641 | 3467718 | 3467641 | ID=Msa0438700-mRNA-1:exon:774;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3467798 | 3467848 | 3467798 | ID=Msa0438700-mRNA-1:exon:775;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3467964 | 3467998 | 3467964 | ID=Msa0438700-mRNA-1:exon:776;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3468107 | 3468215 | 3468107 | ID=Msa0438700-mRNA-1:exon:777;Parent=Msa0438700-mRNA-1 |
| chr3_3 | exon | 3468381 | 3468584 | 3468381 | ID=Msa0438700-mRNA-1:exon:778;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3466054 | 3466192 | 3466054 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3466693 | 3466901 | 3466693 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3467023 | 3467088 | 3467023 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3467176 | 3467313 | 3467176 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3467641 | 3467718 | 3467641 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3467798 | 3467848 | 3467798 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3467964 | 3467998 | 3467964 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3468107 | 3468215 | 3468107 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| chr3_3 | CDS | 3468381 | 3468584 | 3468381 | ID=Msa0438700-mRNA-1:cds;Parent=Msa0438700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
