Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101590 | XP_003601536.2 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101590 | sp|Q94B74|NUDT2_ARATH | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 6.95e-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101590 | G7J8V6 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0229770 | Msa1101590 | 0.881771 | 1.819003e-70 | -8.615850e-47 |
| Msa0387720 | Msa1101590 | 0.903150 | 4.669939e-79 | -8.615850e-47 |
| Msa0438700 | Msa1101590 | 0.874101 | 8.786238e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101590 | MtrunA17_Chr3g0120821 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Msa1101590 | MtrunA17_Chr8g0383231 | 64.093 | 259 | 91 | 2 | 83 | 339 | 23 | 281 | 1.32e-122 | 354 |
| Msa1101590 | MtrunA17_Chr3g0102431 | 57.977 | 257 | 106 | 1 | 78 | 332 | 25 | 281 | 9.41e-105 | 308 |
| Msa1101590 | MtrunA17_Chr2g0290501 | 53.150 | 254 | 117 | 1 | 78 | 329 | 71 | 324 | 1.20e-104 | 310 |
| Msa1101590 | MtrunA17_Chr4g0076351 | 54.475 | 257 | 112 | 3 | 78 | 329 | 12 | 268 | 3.67e-103 | 304 |
| Msa1101590 | MtrunA17_Chr4g0055811 | 50.000 | 238 | 118 | 1 | 78 | 314 | 91 | 328 | 8.17e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1101590 | AT5G47650.5 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa1101590 | AT5G47650.3 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa1101590 | AT5G47650.1 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa1101590 | AT5G47650.4 | 56.031 | 257 | 113 | 0 | 76 | 332 | 63 | 319 | 3.36e-109 | 322 |
| Msa1101590 | AT5G47650.2 | 56.031 | 257 | 113 | 0 | 76 | 332 | 64 | 320 | 4.97e-109 | 321 |
| Msa1101590 | AT4G25434.10 | 54.651 | 258 | 115 | 1 | 78 | 333 | 19 | 276 | 4.40e-102 | 302 |
| Msa1101590 | AT4G25434.1 | 53.101 | 258 | 114 | 2 | 78 | 333 | 19 | 271 | 1.62e-96 | 288 |
| Msa1101590 | AT4G25434.8 | 49.474 | 285 | 115 | 2 | 78 | 333 | 19 | 303 | 3.31e-96 | 288 |
| Msa1101590 | AT4G12720.2 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa1101590 | AT4G12720.3 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa1101590 | AT4G12720.1 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa1101590 | AT2G04450.1 | 54.135 | 266 | 117 | 5 | 78 | 339 | 10 | 274 | 1.17e-92 | 278 |
| Msa1101590 | AT2G04430.2 | 50.943 | 265 | 121 | 5 | 78 | 337 | 10 | 270 | 6.81e-91 | 273 |
| Msa1101590 | AT4G25434.2 | 48.070 | 285 | 114 | 3 | 78 | 333 | 19 | 298 | 1.05e-90 | 274 |
| Msa1101590 | AT2G04430.1 | 50.943 | 265 | 121 | 5 | 78 | 337 | 29 | 289 | 1.54e-90 | 273 |
| Msa1101590 | AT4G25434.7 | 61.616 | 198 | 76 | 0 | 78 | 275 | 19 | 216 | 1.39e-89 | 268 |
| Msa1101590 | AT4G12720.4 | 46.078 | 306 | 122 | 4 | 78 | 340 | 10 | 315 | 1.33e-87 | 266 |
| Msa1101590 | AT5G47240.1 | 48.921 | 278 | 135 | 5 | 62 | 335 | 82 | 356 | 1.12e-85 | 263 |
| Msa1101590 | AT4G25434.9 | 59.596 | 198 | 75 | 1 | 78 | 275 | 19 | 211 | 4.05e-84 | 254 |
| Msa1101590 | AT4G25434.6 | 54.222 | 225 | 76 | 1 | 78 | 275 | 19 | 243 | 4.80e-84 | 254 |
| Msa1101590 | AT5G47240.2 | 44.625 | 307 | 134 | 6 | 62 | 335 | 82 | 385 | 7.42e-80 | 249 |
| Msa1101590 | AT4G12720.5 | 57.500 | 200 | 83 | 2 | 78 | 275 | 10 | 209 | 2.29e-77 | 236 |
| Msa1101590 | AT4G25434.3 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa1101590 | AT4G25434.5 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa1101590 | AT4G25434.12 | 63.354 | 161 | 59 | 0 | 78 | 238 | 19 | 179 | 5.97e-73 | 226 |
| Msa1101590 | AT4G25434.4 | 52.500 | 200 | 88 | 2 | 136 | 333 | 32 | 226 | 1.23e-70 | 220 |
| Msa1101590 | AT4G25434.11 | 54.255 | 188 | 59 | 1 | 78 | 238 | 19 | 206 | 3.33e-67 | 212 |
| Msa1101590 | AT4G12720.6 | 51.562 | 192 | 90 | 3 | 152 | 340 | 1 | 192 | 7.98e-64 | 201 |
| Msa1101590 | AT4G25434.13 | 47.393 | 211 | 82 | 2 | 152 | 333 | 1 | 211 | 9.26e-62 | 197 |
| Msa1101590 | AT2G04440.1 | 54.348 | 138 | 61 | 1 | 78 | 213 | 10 | 147 | 1.75e-45 | 155 |
Find 61 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCCTCTTCAGCTTTAT+TGG | 0.138830 | 7_3:-32369884 | Msa1101590:CDS |
| ATCACTTGATGCTTGTATAT+TGG | 0.219532 | 7_3:-32369407 | Msa1101590:CDS |
| TTGATAGGTCCTTGTGGTTC+AGG | 0.282859 | 7_3:-32368910 | Msa1101590:intron |
| ATGATTTAGAAGTTGCTAAA+AGG | 0.301913 | 7_3:+32370519 | None:intergenic |
| GATTCAGCGGTAAAGGAATA+TGG | 0.321175 | 7_3:-32368875 | Msa1101590:CDS |
| AGTTCAAGATTAGTGAAGTT+TGG | 0.337473 | 7_3:+32367988 | None:intergenic |
| TATACAAGCATCAAGTGATT+TGG | 0.351532 | 7_3:+32369411 | None:intergenic |
| AAAAGTAGGTTTATCAAAGT+TGG | 0.377713 | 7_3:-32368110 | Msa1101590:CDS |
| GCATTTGCAGGAATGGTATC+AGG | 0.387309 | 7_3:+32369372 | None:intergenic |
| GAAGTTTGGAAGTTAACAAA+TGG | 0.394809 | 7_3:+32368002 | None:intergenic |
| TAAACATTACCTTGAAATTG+AGG | 0.413912 | 7_3:+32370434 | None:intergenic |
| TTTGACTTCCTTACAAAAGT+AGG | 0.414349 | 7_3:-32368124 | Msa1101590:CDS |
| AGGATTACTGACCTCCATAT+TGG | 0.421202 | 7_3:+32369311 | None:intergenic |
| TGTAAACATTGAGGAACCTA+TGG | 0.430629 | 7_3:-32369791 | Msa1101590:CDS |
| ACAAGATTTGAGTGTTCTCT+TGG | 0.433589 | 7_3:+32369564 | None:intergenic |
| GTCATTTAACATTCAGAGCC+AGG | 0.434886 | 7_3:-32368369 | Msa1101590:CDS |
| CTGCCTCAATTTCTGAAGCC+TGG | 0.437999 | 7_3:+32368351 | None:intergenic |
| AATTCAGTGGATGGCAATTG+AGG | 0.454069 | 7_3:-32368185 | Msa1101590:intron |
| GAGGCAGACCAATATGCTCT+TGG | 0.461247 | 7_3:+32369898 | None:intergenic |
| TTCAGAAATTGAGGCAGCTC+AGG | 0.463477 | 7_3:-32368345 | Msa1101590:intron |
| AATGGTAGATTCAGCGGTAA+AGG | 0.464011 | 7_3:-32368882 | Msa1101590:CDS |
| CTCTTCAGCTTTATTGGATG+AGG | 0.465200 | 7_3:-32369878 | Msa1101590:CDS |
| AAACATTACCTTGAAATTGA+GGG | 0.467955 | 7_3:+32370435 | None:intergenic |
| ATTATCACAATGGAGGATAC+AGG | 0.479874 | 7_3:-32369734 | Msa1101590:intron |
| ATGCGGTGAGAAGCATTTGC+AGG | 0.480367 | 7_3:+32369360 | None:intergenic |
| AAGTTTGGAAGTTAACAAAT+GGG | 0.487670 | 7_3:+32368003 | None:intergenic |
| TCTATCATCCCTCAATTTCA+AGG | 0.489999 | 7_3:-32370443 | Msa1101590:intron |
| GAGCCAGGCTTCAGAAATTG+AGG | 0.505160 | 7_3:-32368354 | Msa1101590:CDS |
| GGAATGGTATCAGGAGTGTT+GGG | 0.509248 | 7_3:+32369381 | None:intergenic |
| AGGCAGACCAATATGCTCTT+GGG | 0.509293 | 7_3:+32369899 | None:intergenic |
| GTGAGAGGTAGATGTACTAC+TGG | 0.512908 | 7_3:-32369853 | Msa1101590:CDS |
| AGAGAAGTCAAAGAAGAGAC+AGG | 0.513614 | 7_3:-32368714 | Msa1101590:CDS |
| AGTGATTTGGTTCAGCATGA+TGG | 0.514943 | 7_3:+32369424 | None:intergenic |
| GGAATATGGAAATTGCCTAC+TGG | 0.514957 | 7_3:-32368861 | Msa1101590:CDS |
| AGGAATGGTATCAGGAGTGT+TGG | 0.517783 | 7_3:+32369380 | None:intergenic |
| GCTAAAACTAAAACTTCTCA+TGG | 0.518230 | 7_3:-32370467 | Msa1101590:CDS |
| TTATATGCATGTTGCAACCT+CGG | 0.518990 | 7_3:-32368391 | Msa1101590:CDS |
| GTGAGAAGCATTTGCAGGAA+TGG | 0.520377 | 7_3:+32369365 | None:intergenic |
| CTCATCCAATAAAGCTGAAG+AGG | 0.520600 | 7_3:+32369879 | None:intergenic |
| TCTTGTGGCTTCTGCTGTTG+AGG | 0.529767 | 7_3:-32369547 | Msa1101590:intron |
| GCTTCTCACCGCATTTCTAT+CGG | 0.534615 | 7_3:-32369351 | Msa1101590:CDS |
| GTAGGTTTATCAAAGTTGGA+AGG | 0.564992 | 7_3:-32368106 | Msa1101590:CDS |
| AGGAGTTATTGTAAACATTG+AGG | 0.569638 | 7_3:-32369800 | Msa1101590:CDS |
| TGCTAAAACTTCAACAAACT+CGG | 0.569929 | 7_3:+32368568 | None:intergenic |
| GCCTACTGGAGCTGTTAATG+AGG | 0.578161 | 7_3:-32368847 | Msa1101590:intron |
| GCAAAATCAAAAGAATCCAT+AGG | 0.578220 | 7_3:+32369775 | None:intergenic |
| TTATTGGATGAGGAAGTGAG+AGG | 0.590204 | 7_3:-32369868 | Msa1101590:CDS |
| GTGGAGGGACAGAAGATGTG+AGG | 0.596463 | 7_3:+32370495 | None:intergenic |
| TGGATTACTCAAAGCTGTTG+AGG | 0.604757 | 7_3:-32369833 | Msa1101590:CDS |
| AAGAGAACACTCAAATCTTG+TGG | 0.611816 | 7_3:-32369562 | Msa1101590:CDS |
| TCTAGGGAAAGAAGGGAGTG+TGG | 0.616092 | 7_3:-32369596 | Msa1101590:intron |
| TGTAGTCAATGCCAATATGG+AGG | 0.628749 | 7_3:-32369322 | Msa1101590:intron |
| AAGTTGGAAGGAAAGTACTC+AGG | 0.639796 | 7_3:-32368094 | Msa1101590:CDS |
| GTACACATGGGACTTGCAAG+AGG | 0.641683 | 7_3:+32368045 | None:intergenic |
| ATGCTTCATTATCACAATGG+AGG | 0.642405 | 7_3:-32369741 | Msa1101590:CDS |
| TAGATGCTTCATTATCACAA+TGG | 0.672794 | 7_3:-32369744 | Msa1101590:CDS |
| AAAGCTGTTGAGGATCAACA+TGG | 0.673299 | 7_3:-32369823 | Msa1101590:CDS |
| CTCTGAATGTTAAATGACCG+AGG | 0.679928 | 7_3:+32368374 | None:intergenic |
| ACCTCATTAACAGCTCCAGT+AGG | 0.710120 | 7_3:+32368846 | None:intergenic |
| CAAAAGCACCGATAGAAATG+CGG | 0.718623 | 7_3:+32369343 | None:intergenic |
| GCTGTTGAGGATCAACATGG+AGG | 0.750639 | 7_3:-32369820 | Msa1101590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTGAAAAATAATT+TGG | + | chr7_3:32368537-32368556 | None:intergenic | 10.0% |
| !! | GATTAATAAAAAAATATAGA+AGG | + | chr7_3:32369269-32369288 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAAAAATTCAG+TGG | - | chr7_3:32370359-32370378 | Msa1101590:intron | 10.0% |
| !! | TCCTTAAAATTAAGAAAAAT+TGG | - | chr7_3:32368867-32368886 | Msa1101590:CDS | 15.0% |
| !!! | TCCAATTTTTCTTAATTTTA+AGG | + | chr7_3:32368871-32368890 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGTTATTTCTAT+TGG | - | chr7_3:32368913-32368932 | Msa1101590:intron | 15.0% |
| !!! | TTTAAAGTTTCACAAAATCA+CGG | + | chr7_3:32368212-32368231 | None:intergenic | 20.0% |
| !!! | TTAAAGTGTTCATTTTGTTA+AGG | - | chr7_3:32368227-32368246 | Msa1101590:intron | 20.0% |
| !!! | TAAAGTGTTCATTTTGTTAA+GGG | - | chr7_3:32368228-32368247 | Msa1101590:intron | 20.0% |
| !!! | TCAATCCATTTTTACATAAA+TGG | + | chr7_3:32368373-32368392 | None:intergenic | 20.0% |
| !!! | AGCAAAGTTATTTTTCAATA+TGG | - | chr7_3:32368562-32368581 | Msa1101590:intron | 20.0% |
| !! | TACACATTAAGAAATATGTA+TGG | + | chr7_3:32369598-32369617 | None:intergenic | 20.0% |
| !! | AAGGTTTGAATTTCAAAATA+TGG | + | chr7_3:32369929-32369948 | None:intergenic | 20.0% |
| !! | TGTTCGAATATTACTATATT+TGG | - | chr7_3:32370052-32370071 | Msa1101590:intron | 20.0% |
| !!! | TTTTTTAAAAATTCAGTGGA+TGG | - | chr7_3:32370363-32370382 | Msa1101590:intron | 20.0% |
| ! | ATGATTTAGAAGTTGCTAAA+AGG | + | chr7_3:32368041-32368060 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTTAGCTAAAAG+TGG | + | chr7_3:32368084-32368103 | None:intergenic | 25.0% |
| ! | AAACATTACCTTGAAATTGA+GGG | + | chr7_3:32368125-32368144 | None:intergenic | 25.0% |
| ! | TAAACATTACCTTGAAATTG+AGG | + | chr7_3:32368126-32368145 | None:intergenic | 25.0% |
| ! | GTGATCCATTTATGTAAAAA+TGG | - | chr7_3:32368365-32368384 | Msa1101590:CDS | 25.0% |
| ! | TTAGTACTTGAATAATGCTT+AGG | + | chr7_3:32368599-32368618 | None:intergenic | 25.0% |
| !!! | GTTATTTCTATTGGTTGTTA+AGG | - | chr7_3:32368922-32368941 | Msa1101590:intron | 25.0% |
| !!! | TTTTGGAATGTTGTTTTCTA+GGG | - | chr7_3:32368945-32368964 | Msa1101590:intron | 25.0% |
| ! | TTCATTTGAATTCAATTTGC+AGG | - | chr7_3:32369794-32369813 | Msa1101590:CDS | 25.0% |
| ! | TCATTTGAATTCAATTTGCA+GGG | - | chr7_3:32369795-32369814 | Msa1101590:CDS | 25.0% |
| !! | TGAAATTCAAACCTTTTCTA+AGG | - | chr7_3:32369934-32369953 | Msa1101590:intron | 25.0% |
| ! | GAAAAGATGAATAAAAGCAA+TGG | + | chr7_3:32369960-32369979 | None:intergenic | 25.0% |
| !!! | CAGTCTTATTTTTGTTTTTC+CGG | - | chr7_3:32370093-32370112 | Msa1101590:intron | 25.0% |
| ! | AAAACCCACATTAAATGAAT+TGG | + | chr7_3:32370334-32370353 | None:intergenic | 25.0% |
| !!! | TTGATAAACCTACTTTTGTA+AGG | + | chr7_3:32370444-32370463 | None:intergenic | 25.0% |
| ! | AAAAGTAGGTTTATCAAAGT+TGG | - | chr7_3:32370447-32370466 | Msa1101590:CDS | 25.0% |
| ! | AAGTTTGGAAGTTAACAAAT+GGG | + | chr7_3:32370557-32370576 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGCTAAAAGTGGA+GGG | + | chr7_3:32368080-32368099 | None:intergenic | 30.0% |
| !!! | TTAGTTTTAGCTAAAAGTGG+AGG | + | chr7_3:32368081-32368100 | None:intergenic | 30.0% |
| GCTAAAACTAAAACTTCTCA+TGG | - | chr7_3:32368090-32368109 | Msa1101590:CDS | 30.0% | |
| ACATGCACTAAGATTATGTT+TGG | - | chr7_3:32368290-32368309 | Msa1101590:intron | 30.0% | |
| AGGAGTTATTGTAAACATTG+AGG | - | chr7_3:32368757-32368776 | Msa1101590:intron | 30.0% | |
| GCAAAATCAAAAGAATCCAT+AGG | + | chr7_3:32368785-32368804 | None:intergenic | 30.0% | |
| TAGATGCTTCATTATCACAA+TGG | - | chr7_3:32368813-32368832 | Msa1101590:intron | 30.0% | |
| !! | TCTATTGGTTGTTAAGGTTT+TGG | - | chr7_3:32368928-32368947 | Msa1101590:intron | 30.0% |
| !!! | GTTTTGGAATGTTGTTTTCT+AGG | - | chr7_3:32368944-32368963 | Msa1101590:intron | 30.0% |
| TACATTACATCACATTCACA+AGG | + | chr7_3:32369076-32369095 | None:intergenic | 30.0% | |
| ATTTGAATCCAGCCTATAAA+AGG | + | chr7_3:32369112-32369131 | None:intergenic | 30.0% | |
| TATACAAGCATCAAGTGATT+TGG | + | chr7_3:32369149-32369168 | None:intergenic | 30.0% | |
| ATCACTTGATGCTTGTATAT+TGG | - | chr7_3:32369150-32369169 | Msa1101590:intron | 30.0% | |
| ! | TTTTGTAGTCAATGCCAATA+TGG | - | chr7_3:32369232-32369251 | Msa1101590:intron | 30.0% |
| AATCAGATTGAAGATGTGTT+CGG | - | chr7_3:32369285-32369304 | Msa1101590:intron | 30.0% | |
| AAATATGTATGGTCACATCA+AGG | + | chr7_3:32369587-32369606 | None:intergenic | 30.0% | |
| !! | TTTTATTTGATAGGTCCTTG+TGG | - | chr7_3:32369641-32369660 | Msa1101590:intron | 30.0% |
| GAAAAAAATGGTAGATTCAG+CGG | - | chr7_3:32369669-32369688 | Msa1101590:intron | 30.0% | |
| TGCTAAAACTTCAACAAACT+CGG | + | chr7_3:32369992-32370011 | None:intergenic | 30.0% | |
| !! | TTGTTGAAGTTTTAGCATTC+AGG | - | chr7_3:32369995-32370014 | Msa1101590:intron | 30.0% |
| TTTAGCATTCAGGTAAGATT+TGG | - | chr7_3:32370005-32370024 | Msa1101590:intron | 30.0% | |
| ! | ACATGCAATGTGAACATTTT+TGG | + | chr7_3:32370032-32370051 | None:intergenic | 30.0% |
| ATGTCTTTCTCTGATATAAC+CGG | + | chr7_3:32370115-32370134 | None:intergenic | 30.0% | |
| AGAAGCCAATTCATTTAATG+TGG | - | chr7_3:32370326-32370345 | Msa1101590:intron | 30.0% | |
| GAAGCCAATTCATTTAATGT+GGG | - | chr7_3:32370327-32370346 | Msa1101590:intron | 30.0% | |
| ! | AGTCAAATAGCTCATTTTGT+TGG | + | chr7_3:32370420-32370439 | None:intergenic | 30.0% |
| ! | TTTGACTTCCTTACAAAAGT+AGG | - | chr7_3:32370433-32370452 | Msa1101590:intron | 30.0% |
| !! | TTTTGTGTTGATGTACACAT+GGG | + | chr7_3:32370527-32370546 | None:intergenic | 30.0% |
| GAAGTTTGGAAGTTAACAAA+TGG | + | chr7_3:32370558-32370577 | None:intergenic | 30.0% | |
| TCTATCATCCCTCAATTTCA+AGG | - | chr7_3:32368114-32368133 | Msa1101590:CDS | 35.0% | |
| TGAATTAGTGGTGAAACTGT+TGG | + | chr7_3:32368269-32368288 | None:intergenic | 35.0% | |
| TTAGTGCATGTCTGAATTAG+TGG | + | chr7_3:32368281-32368300 | None:intergenic | 35.0% | |
| !!! | CCAACATTGATTTTGTGTCA+AGG | + | chr7_3:32368466-32368485 | None:intergenic | 35.0% |
| CCTTGACACAAAATCAATGT+TGG | - | chr7_3:32368463-32368482 | Msa1101590:intron | 35.0% | |
| TGATTCAACTTAGAGTTGTG+TGG | + | chr7_3:32368506-32368525 | None:intergenic | 35.0% | |
| !! | ACTAATTTGTGACCCCTTTT+AGG | - | chr7_3:32368614-32368633 | Msa1101590:intron | 35.0% |
| ACTGTTCTTGTAGCCTAAAA+GGG | + | chr7_3:32368630-32368649 | None:intergenic | 35.0% | |
| AACTGTTCTTGTAGCCTAAA+AGG | + | chr7_3:32368631-32368650 | None:intergenic | 35.0% | |
| !! | TTCTTTTCCCAAGAGCATAT+TGG | - | chr7_3:32368651-32368670 | Msa1101590:intron | 35.0% |
| TGTAAACATTGAGGAACCTA+TGG | - | chr7_3:32368766-32368785 | Msa1101590:intron | 35.0% | |
| ATGCTTCATTATCACAATGG+AGG | - | chr7_3:32368816-32368835 | Msa1101590:intron | 35.0% | |
| ATTATCACAATGGAGGATAC+AGG | - | chr7_3:32368823-32368842 | Msa1101590:intron | 35.0% | |
| !!! | TGTTGTTTTCTAGGGAAAGA+AGG | - | chr7_3:32368953-32368972 | Msa1101590:intron | 35.0% |
| !! | GTTGTTTTCTAGGGAAAGAA+GGG | - | chr7_3:32368954-32368973 | Msa1101590:intron | 35.0% |
| ACAAGATTTGAGTGTTCTCT+TGG | + | chr7_3:32368996-32369015 | None:intergenic | 35.0% | |
| AAGAGAACACTCAAATCTTG+TGG | - | chr7_3:32368995-32369014 | Msa1101590:intron | 35.0% | |
| ! | CATTTTGCTGCTCCTTTTAT+AGG | - | chr7_3:32369097-32369116 | Msa1101590:intron | 35.0% |
| ! | AGGTTCATGAAAAGTACAAC+TGG | + | chr7_3:32369550-32369569 | None:intergenic | 35.0% |
| ! | AGTTGTACTTTTCATGAACC+TGG | - | chr7_3:32369549-32369568 | Msa1101590:CDS | 35.0% |
| !!! | CATTTTTTTCCTGAACCACA+AGG | + | chr7_3:32369659-32369678 | None:intergenic | 35.0% |
| CTTGTGGTTCAGGAAAAAAA+TGG | - | chr7_3:32369657-32369676 | Msa1101590:intron | 35.0% | |
| ! | AAAAGCAATGGCCTTAGAAA+AGG | + | chr7_3:32369948-32369967 | None:intergenic | 35.0% |
| TTATATGCATGTTGCAACCT+CGG | - | chr7_3:32370166-32370185 | Msa1101590:intron | 35.0% | |
| ! | AGCTCATTTTGTTGGAGAAA+AGG | + | chr7_3:32370412-32370431 | None:intergenic | 35.0% |
| GTAGGTTTATCAAAGTTGGA+AGG | - | chr7_3:32370451-32370470 | Msa1101590:CDS | 35.0% | |
| !! | CTTTTGTGTTGATGTACACA+TGG | + | chr7_3:32370528-32370547 | None:intergenic | 35.0% |
| ACTTAGAGTTGTGTGGTGTT+TGG | + | chr7_3:32368499-32368518 | None:intergenic | 40.0% | |
| CTGTTCTTGTAGCCTAAAAG+GGG | + | chr7_3:32368629-32368648 | None:intergenic | 40.0% | |
| CTCATCCAATAAAGCTGAAG+AGG | + | chr7_3:32368681-32368700 | None:intergenic | 40.0% | |
| !! | CTCTTCAGCTTTATTGGATG+AGG | - | chr7_3:32368679-32368698 | Msa1101590:intron | 40.0% |
| TTATTGGATGAGGAAGTGAG+AGG | - | chr7_3:32368689-32368708 | Msa1101590:intron | 40.0% | |
| TGGATTACTCAAAGCTGTTG+AGG | - | chr7_3:32368724-32368743 | Msa1101590:CDS | 40.0% | |
| AAAGCTGTTGAGGATCAACA+TGG | - | chr7_3:32368734-32368753 | Msa1101590:CDS | 40.0% | |
| !! | AGTGATTTGGTTCAGCATGA+TGG | + | chr7_3:32369136-32369155 | None:intergenic | 40.0% |
| !! | CAAAAGCACCGATAGAAATG+CGG | + | chr7_3:32369217-32369236 | None:intergenic | 40.0% |
| TGTAGTCAATGCCAATATGG+AGG | - | chr7_3:32369235-32369254 | Msa1101590:intron | 40.0% | |
| AGGATTACTGACCTCCATAT+TGG | + | chr7_3:32369249-32369268 | None:intergenic | 40.0% | |
| CAACTGAAACCAAGACATGA+CGG | + | chr7_3:32369335-32369354 | None:intergenic | 40.0% | |
| TGCTTATAGTCATGTGCTAG+TGG | + | chr7_3:32369464-32369483 | None:intergenic | 40.0% | |
| !! | TCAAGGTAGATATTGACTCC+AGG | + | chr7_3:32369570-32369589 | None:intergenic | 40.0% |
| AATGGTAGATTCAGCGGTAA+AGG | - | chr7_3:32369675-32369694 | Msa1101590:intron | 40.0% | |
| GATTCAGCGGTAAAGGAATA+TGG | - | chr7_3:32369682-32369701 | Msa1101590:intron | 40.0% | |
| GGAATATGGAAATTGCCTAC+TGG | - | chr7_3:32369696-32369715 | Msa1101590:intron | 40.0% | |
| TGAATTCAATTTGCAGGGTG+AGG | - | chr7_3:32369800-32369819 | Msa1101590:CDS | 40.0% | |
| AGAGAAGTCAAAGAAGAGAC+AGG | - | chr7_3:32369843-32369862 | Msa1101590:CDS | 40.0% | |
| CTCTGAATGTTAAATGACCG+AGG | + | chr7_3:32370186-32370205 | None:intergenic | 40.0% | |
| GTCATTTAACATTCAGAGCC+AGG | - | chr7_3:32370188-32370207 | Msa1101590:intron | 40.0% | |
| AATTCAGTGGATGGCAATTG+AGG | - | chr7_3:32370372-32370391 | Msa1101590:intron | 40.0% | |
| !! | AAGTTGGAAGGAAAGTACTC+AGG | - | chr7_3:32370463-32370482 | Msa1101590:CDS | 40.0% |
| AGGCAGACCAATATGCTCTT+GGG | + | chr7_3:32368661-32368680 | None:intergenic | 45.0% | |
| ! | GTCTGCCTCTTCAGCTTTAT+TGG | - | chr7_3:32368673-32368692 | Msa1101590:intron | 45.0% |
| GTGAGAGGTAGATGTACTAC+TGG | - | chr7_3:32368704-32368723 | Msa1101590:intron | 45.0% | |
| ! | TTGCTGCTCCTTTTATAGGC+TGG | - | chr7_3:32369101-32369120 | Msa1101590:intron | 45.0% |
| !! | GGAATGGTATCAGGAGTGTT+GGG | + | chr7_3:32369179-32369198 | None:intergenic | 45.0% |
| ! | AGGAATGGTATCAGGAGTGT+TGG | + | chr7_3:32369180-32369199 | None:intergenic | 45.0% |
| GCATTTGCAGGAATGGTATC+AGG | + | chr7_3:32369188-32369207 | None:intergenic | 45.0% | |
| !! | GTGAGAAGCATTTGCAGGAA+TGG | + | chr7_3:32369195-32369214 | None:intergenic | 45.0% |
| GCTTCTCACCGCATTTCTAT+CGG | - | chr7_3:32369206-32369225 | Msa1101590:intron | 45.0% | |
| TTGATAGGTCCTTGTGGTTC+AGG | - | chr7_3:32369647-32369666 | Msa1101590:intron | 45.0% | |
| ACCTCATTAACAGCTCCAGT+AGG | + | chr7_3:32369714-32369733 | None:intergenic | 45.0% | |
| TTCAGAAATTGAGGCAGCTC+AGG | - | chr7_3:32370212-32370231 | Msa1101590:intron | 45.0% | |
| !!! | AATTATTTATTTGATTATTT+TGG | - | chr7_3:32369488-32369507 | Msa1101590:intron | 5.0% |
| !!! | TTATTTTATTTTTATTTGAT+AGG | - | chr7_3:32369632-32369651 | Msa1101590:intron | 5.0% |
| GAGGCAGACCAATATGCTCT+TGG | + | chr7_3:32368662-32368681 | None:intergenic | 50.0% | |
| GCTGTTGAGGATCAACATGG+AGG | - | chr7_3:32368737-32368756 | Msa1101590:CDS | 50.0% | |
| TCTAGGGAAAGAAGGGAGTG+TGG | - | chr7_3:32368961-32368980 | Msa1101590:intron | 50.0% | |
| TCTTGTGGCTTCTGCTGTTG+AGG | - | chr7_3:32369010-32369029 | Msa1101590:intron | 50.0% | |
| !! | ATGCGGTGAGAAGCATTTGC+AGG | + | chr7_3:32369200-32369219 | None:intergenic | 50.0% |
| GTCTGTACACCGTCATGTCT+TGG | - | chr7_3:32369323-32369342 | Msa1101590:CDS | 50.0% | |
| GCCTACTGGAGCTGTTAATG+AGG | - | chr7_3:32369710-32369729 | Msa1101590:intron | 50.0% | |
| GAGCCAGGCTTCAGAAATTG+AGG | - | chr7_3:32370203-32370222 | Msa1101590:intron | 50.0% | |
| !! | CTGCCTCAATTTCTGAAGCC+TGG | + | chr7_3:32370209-32370228 | None:intergenic | 50.0% |
| GTACACATGGGACTTGCAAG+AGG | + | chr7_3:32370515-32370534 | None:intergenic | 50.0% | |
| GTGGAGGGACAGAAGATGTG+AGG | + | chr7_3:32368065-32368084 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 32367997 | 32370582 | 32367997 | ID=Msa1101590;Name=Msa1101590 |
| chr7_3 | mRNA | 32367997 | 32370582 | 32367997 | ID=Msa1101590-mRNA-1;Parent=Msa1101590;Name=Msa1101590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.62|0.33|1|1|1|9|0|342 |
| chr7_3 | exon | 32370444 | 32370582 | 32370444 | ID=Msa1101590-mRNA-1:exon:7029;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32369735 | 32369943 | 32369735 | ID=Msa1101590-mRNA-1:exon:7028;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32369548 | 32369613 | 32369548 | ID=Msa1101590-mRNA-1:exon:7027;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32369323 | 32369460 | 32369323 | ID=Msa1101590-mRNA-1:exon:7026;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32368848 | 32368925 | 32368848 | ID=Msa1101590-mRNA-1:exon:7025;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32368713 | 32368763 | 32368713 | ID=Msa1101590-mRNA-1:exon:7024;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32368563 | 32368597 | 32368563 | ID=Msa1101590-mRNA-1:exon:7023;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32368346 | 32368454 | 32368346 | ID=Msa1101590-mRNA-1:exon:7022;Parent=Msa1101590-mRNA-1 |
| chr7_3 | exon | 32367997 | 32368200 | 32367997 | ID=Msa1101590-mRNA-1:exon:7021;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32370444 | 32370582 | 32370444 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32369735 | 32369943 | 32369735 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32369548 | 32369613 | 32369548 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32369323 | 32369460 | 32369323 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32368848 | 32368925 | 32368848 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32368713 | 32368763 | 32368713 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32368563 | 32368597 | 32368563 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32368346 | 32368454 | 32368346 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| chr7_3 | CDS | 32367997 | 32368200 | 32367997 | ID=Msa1101590-mRNA-1:cds;Parent=Msa1101590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
