Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387720 | XP_003601536.2 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387720 | sp|Q94B74|NUDT2_ARATH | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 6.95e-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387720 | G7J8V6 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0200850 | Msa0387720 | 0.809624 | 1.726131e-50 | -8.615850e-47 |
| Msa0229770 | Msa0387720 | 0.877062 | 8.490198e-69 | -8.615850e-47 |
| Msa0387720 | Msa0438700 | 0.872677 | 2.645824e-67 | -8.615850e-47 |
| Msa0387720 | Msa1101590 | 0.903150 | 4.669939e-79 | -8.615850e-47 |
| Msa0387720 | Msa1238330 | 0.801467 | 8.880015e-49 | -8.615850e-47 |
| Msa0243480 | Msa0387720 | 0.807301 | 5.405055e-50 | -8.615850e-47 |
| Msa0321080 | Msa0387720 | 0.809840 | 1.551189e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387720 | MtrunA17_Chr3g0120821 | 97.067 | 341 | 10 | 0 | 1 | 341 | 3 | 343 | 0.0 | 699 |
| Msa0387720 | MtrunA17_Chr8g0383231 | 64.093 | 259 | 91 | 2 | 83 | 339 | 23 | 281 | 1.32e-122 | 354 |
| Msa0387720 | MtrunA17_Chr3g0102431 | 57.977 | 257 | 106 | 1 | 78 | 332 | 25 | 281 | 9.41e-105 | 308 |
| Msa0387720 | MtrunA17_Chr2g0290501 | 53.150 | 254 | 117 | 1 | 78 | 329 | 71 | 324 | 1.20e-104 | 310 |
| Msa0387720 | MtrunA17_Chr4g0076351 | 54.475 | 257 | 112 | 3 | 78 | 329 | 12 | 268 | 3.67e-103 | 304 |
| Msa0387720 | MtrunA17_Chr4g0055811 | 50.000 | 238 | 118 | 1 | 78 | 314 | 91 | 328 | 8.17e-87 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387720 | AT5G47650.5 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0387720 | AT5G47650.3 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0387720 | AT5G47650.1 | 54.945 | 273 | 122 | 1 | 60 | 332 | 2 | 273 | 7.07e-111 | 324 |
| Msa0387720 | AT5G47650.4 | 56.031 | 257 | 113 | 0 | 76 | 332 | 63 | 319 | 3.36e-109 | 322 |
| Msa0387720 | AT5G47650.2 | 56.031 | 257 | 113 | 0 | 76 | 332 | 64 | 320 | 4.97e-109 | 321 |
| Msa0387720 | AT4G25434.10 | 54.651 | 258 | 115 | 1 | 78 | 333 | 19 | 276 | 4.40e-102 | 302 |
| Msa0387720 | AT4G25434.1 | 53.101 | 258 | 114 | 2 | 78 | 333 | 19 | 271 | 1.62e-96 | 288 |
| Msa0387720 | AT4G25434.8 | 49.474 | 285 | 115 | 2 | 78 | 333 | 19 | 303 | 3.31e-96 | 288 |
| Msa0387720 | AT4G12720.2 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0387720 | AT4G12720.3 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0387720 | AT4G12720.1 | 53.008 | 266 | 122 | 3 | 78 | 340 | 10 | 275 | 1.26e-95 | 285 |
| Msa0387720 | AT2G04450.1 | 54.135 | 266 | 117 | 5 | 78 | 339 | 10 | 274 | 1.17e-92 | 278 |
| Msa0387720 | AT2G04430.2 | 50.943 | 265 | 121 | 5 | 78 | 337 | 10 | 270 | 6.81e-91 | 273 |
| Msa0387720 | AT4G25434.2 | 48.070 | 285 | 114 | 3 | 78 | 333 | 19 | 298 | 1.05e-90 | 274 |
| Msa0387720 | AT2G04430.1 | 50.943 | 265 | 121 | 5 | 78 | 337 | 29 | 289 | 1.54e-90 | 273 |
| Msa0387720 | AT4G25434.7 | 61.616 | 198 | 76 | 0 | 78 | 275 | 19 | 216 | 1.39e-89 | 268 |
| Msa0387720 | AT4G12720.4 | 46.078 | 306 | 122 | 4 | 78 | 340 | 10 | 315 | 1.33e-87 | 266 |
| Msa0387720 | AT5G47240.1 | 48.921 | 278 | 135 | 5 | 62 | 335 | 82 | 356 | 1.12e-85 | 263 |
| Msa0387720 | AT4G25434.9 | 59.596 | 198 | 75 | 1 | 78 | 275 | 19 | 211 | 4.05e-84 | 254 |
| Msa0387720 | AT4G25434.6 | 54.222 | 225 | 76 | 1 | 78 | 275 | 19 | 243 | 4.80e-84 | 254 |
| Msa0387720 | AT5G47240.2 | 44.625 | 307 | 134 | 6 | 62 | 335 | 82 | 385 | 7.42e-80 | 249 |
| Msa0387720 | AT4G12720.5 | 57.500 | 200 | 83 | 2 | 78 | 275 | 10 | 209 | 2.29e-77 | 236 |
| Msa0387720 | AT4G25434.3 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0387720 | AT4G25434.5 | 54.500 | 200 | 89 | 1 | 136 | 333 | 32 | 231 | 3.35e-76 | 234 |
| Msa0387720 | AT4G25434.12 | 63.354 | 161 | 59 | 0 | 78 | 238 | 19 | 179 | 5.97e-73 | 226 |
| Msa0387720 | AT4G25434.4 | 52.500 | 200 | 88 | 2 | 136 | 333 | 32 | 226 | 1.23e-70 | 220 |
| Msa0387720 | AT4G25434.11 | 54.255 | 188 | 59 | 1 | 78 | 238 | 19 | 206 | 3.33e-67 | 212 |
| Msa0387720 | AT4G12720.6 | 51.562 | 192 | 90 | 3 | 152 | 340 | 1 | 192 | 7.98e-64 | 201 |
| Msa0387720 | AT4G25434.13 | 47.393 | 211 | 82 | 2 | 152 | 333 | 1 | 211 | 9.26e-62 | 197 |
| Msa0387720 | AT2G04440.1 | 54.348 | 138 | 61 | 1 | 78 | 213 | 10 | 147 | 1.75e-45 | 155 |
Find 60 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTGCCTCTTCAGCTTTAT+TGG | 0.138830 | 3_1:-91794500 | Msa0387720:CDS |
| ATCACTTGATGCTTGTATAT+TGG | 0.219532 | 3_1:-91794023 | Msa0387720:CDS |
| TTGATAGGTCCTTGTGGTTC+AGG | 0.282859 | 3_1:-91793596 | Msa0387720:intron |
| ATGATTTAGAAGTTGCTAAA+AGG | 0.301913 | 3_1:+91795135 | None:intergenic |
| GATTCAGTGGTAAAGGAATA+TGG | 0.313447 | 3_1:-91793561 | Msa0387720:CDS |
| AGTTCAAGATTAGTGAAGTT+TGG | 0.337473 | 3_1:+91792654 | None:intergenic |
| TATACAAGCATCAAGTGATT+TGG | 0.351532 | 3_1:+91794027 | None:intergenic |
| AAAAGTAGGTTTATCAAAGT+TGG | 0.377713 | 3_1:-91792776 | Msa0387720:CDS |
| GCATTTGCAGGAATGGTATC+AGG | 0.387309 | 3_1:+91793988 | None:intergenic |
| GAAGTTTGGAAGTTAACAAA+TGG | 0.394809 | 3_1:+91792668 | None:intergenic |
| TAAACATTACCTTGAAATTG+AGG | 0.413912 | 3_1:+91795050 | None:intergenic |
| TTTGACTTCCTTACAAAAGT+AGG | 0.414349 | 3_1:-91792790 | Msa0387720:CDS |
| AGGATTACTGACCTCCATAT+TGG | 0.421202 | 3_1:+91793927 | None:intergenic |
| TGTAAACATTGAGGAACCTA+TGG | 0.430629 | 3_1:-91794407 | Msa0387720:CDS |
| ACAAGATTTGAGTGTTCTCT+TGG | 0.433589 | 3_1:+91794180 | None:intergenic |
| GTCATTTAACATTCAGAGCC+AGG | 0.434886 | 3_1:-91793055 | Msa0387720:CDS |
| CTGCCTCAATTTCTGAAGCC+TGG | 0.437999 | 3_1:+91793037 | None:intergenic |
| AATTCAGTGGATGGCAATTG+AGG | 0.454069 | 3_1:-91792851 | Msa0387720:intron |
| GAGGCAGACCAATATGCTCT+TGG | 0.461247 | 3_1:+91794514 | None:intergenic |
| TTCAGAAATTGAGGCAGCTC+AGG | 0.463477 | 3_1:-91793031 | Msa0387720:intron |
| CTCTTCAGCTTTATTGGATG+AGG | 0.465200 | 3_1:-91794494 | Msa0387720:CDS |
| AAACATTACCTTGAAATTGA+GGG | 0.467955 | 3_1:+91795051 | None:intergenic |
| AATGGTAGATTCAGTGGTAA+AGG | 0.477463 | 3_1:-91793568 | Msa0387720:CDS |
| ATTATCACAATGGAGGATAC+AGG | 0.479874 | 3_1:-91794350 | Msa0387720:intron |
| ATGCGGTGAGAAGCATTTGC+AGG | 0.480367 | 3_1:+91793976 | None:intergenic |
| AAGTTTGGAAGTTAACAAAT+GGG | 0.487670 | 3_1:+91792669 | None:intergenic |
| TCTATCATCCCTCAATTTCA+AGG | 0.489999 | 3_1:-91795059 | Msa0387720:intron |
| GAGCCAGGCTTCAGAAATTG+AGG | 0.505160 | 3_1:-91793040 | Msa0387720:CDS |
| GGAATGGTATCAGGAGTGTT+GGG | 0.509248 | 3_1:+91793997 | None:intergenic |
| AGGCAGACCAATATGCTCTT+GGG | 0.509293 | 3_1:+91794515 | None:intergenic |
| GTGAGAGGTAGATGTACTAC+TGG | 0.512908 | 3_1:-91794469 | Msa0387720:CDS |
| AGAGAAGTCAAAGAAGAGAC+AGG | 0.513614 | 3_1:-91793400 | Msa0387720:CDS |
| AGTGATTTGGTTCAGCATGA+TGG | 0.514943 | 3_1:+91794040 | None:intergenic |
| GGAATATGGAAATTGCCTAC+TGG | 0.514957 | 3_1:-91793547 | Msa0387720:CDS |
| AGGAATGGTATCAGGAGTGT+TGG | 0.517783 | 3_1:+91793996 | None:intergenic |
| GCTAAAACTAAAACTTCTCA+TGG | 0.518230 | 3_1:-91795083 | Msa0387720:CDS |
| TTATATGCATGTTGCAACCT+CGG | 0.518990 | 3_1:-91793077 | Msa0387720:CDS |
| GTGAGAAGCATTTGCAGGAA+TGG | 0.520377 | 3_1:+91793981 | None:intergenic |
| CTCATCCAATAAAGCTGAAG+AGG | 0.520600 | 3_1:+91794495 | None:intergenic |
| TCTTGTGGCTTCTGCTGTTG+AGG | 0.529767 | 3_1:-91794163 | Msa0387720:intron |
| GCTTCTCACCGCATTTCTAT+CGG | 0.534615 | 3_1:-91793967 | Msa0387720:CDS |
| GTAGGTTTATCAAAGTTGGA+AGG | 0.564992 | 3_1:-91792772 | Msa0387720:CDS |
| AGGAGTTATTGTAAACATTG+AGG | 0.569638 | 3_1:-91794416 | Msa0387720:CDS |
| GCCTACTGGAGCTGTTAATG+AGG | 0.578161 | 3_1:-91793533 | Msa0387720:intron |
| GCAAAATCAAAAGAATCCAT+AGG | 0.578220 | 3_1:+91794391 | None:intergenic |
| TTATTGGATGAGGAAGTGAG+AGG | 0.590204 | 3_1:-91794484 | Msa0387720:CDS |
| GTGGAGGGACAGAAGATGTG+AGG | 0.596463 | 3_1:+91795111 | None:intergenic |
| TGGATTACTCAAAGCTGTTG+AGG | 0.604757 | 3_1:-91794449 | Msa0387720:CDS |
| AAGAGAACACTCAAATCTTG+TGG | 0.611816 | 3_1:-91794178 | Msa0387720:CDS |
| TCTAGGGAAAGAAGGGAGTG+TGG | 0.616092 | 3_1:-91794212 | Msa0387720:intron |
| TGTAGTCAATGCCAATATGG+AGG | 0.628749 | 3_1:-91793938 | Msa0387720:intron |
| AAGTTGGAAGGAAAGTACTC+AGG | 0.639796 | 3_1:-91792760 | Msa0387720:CDS |
| GTACACATGGGACTTGCAAG+AGG | 0.641683 | 3_1:+91792711 | None:intergenic |
| ATGCTTCATTATCACAATGG+AGG | 0.642405 | 3_1:-91794357 | Msa0387720:CDS |
| TAGATGCTTCATTATCACAA+TGG | 0.672794 | 3_1:-91794360 | Msa0387720:CDS |
| AAAGCTGTTGAGGATCAACA+TGG | 0.673299 | 3_1:-91794439 | Msa0387720:CDS |
| CTCTGAATGTTAAATGACCG+AGG | 0.679928 | 3_1:+91793060 | None:intergenic |
| ACCTCATTAACAGCTCCAGT+AGG | 0.710120 | 3_1:+91793532 | None:intergenic |
| CAAAAGCACCGATAGAAATG+CGG | 0.718623 | 3_1:+91793959 | None:intergenic |
| GCTGTTGAGGATCAACATGG+AGG | 0.750639 | 3_1:-91794436 | Msa0387720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTGAAAAATAATT+TGG | + | chr3_1:91793203-91793222 | None:intergenic | 10.0% |
| !! | GATTAATAAAAAAATATAGA+AGG | + | chr3_1:91793935-91793954 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAAAAATTCAG+TGG | - | chr3_1:91794975-91794994 | Msa0387720:intron | 10.0% |
| !! | TCCTTAAAATTAAGAAAAAT+TGG | - | chr3_1:91793533-91793552 | Msa0387720:intron | 15.0% |
| !!! | TCCAATTTTTCTTAATTTTA+AGG | + | chr3_1:91793537-91793556 | None:intergenic | 15.0% |
| !!! | TATTGTTTTGTTATTTCTAT+TGG | - | chr3_1:91793579-91793598 | Msa0387720:CDS | 15.0% |
| !!! | TTTTTTATTAATCAGATTGA+AGG | - | chr3_1:91793942-91793961 | Msa0387720:CDS | 15.0% |
| !! | AAAAATTTATTTGACTATGT+TGG | - | chr3_1:91794084-91794103 | Msa0387720:intron | 15.0% |
| !! | AATATATAAAACTACACTAA+TGG | + | chr3_1:91794841-91794860 | None:intergenic | 15.0% |
| !!! | TTTAAAGTTTCACAAAATCA+CGG | + | chr3_1:91792878-91792897 | None:intergenic | 20.0% |
| !!! | TTAAAGTGTTCATTTTGTTA+AGG | - | chr3_1:91792893-91792912 | Msa0387720:intron | 20.0% |
| !!! | TAAAGTGTTCATTTTGTTAA+GGG | - | chr3_1:91792894-91792913 | Msa0387720:intron | 20.0% |
| !!! | TCAATCCATTTTTACATAAA+TGG | + | chr3_1:91793039-91793058 | None:intergenic | 20.0% |
| !!! | AGCAAAGTTATTTTTCAATA+TGG | - | chr3_1:91793228-91793247 | Msa0387720:intron | 20.0% |
| !! | TACACATTAAGAAATATGTA+TGG | + | chr3_1:91794194-91794213 | None:intergenic | 20.0% |
| !! | AAGGTTTGAATTTCAAAATA+TGG | + | chr3_1:91794525-91794544 | None:intergenic | 20.0% |
| !! | TGTTCGAATATTACTATATT+TGG | - | chr3_1:91794648-91794667 | Msa0387720:intron | 20.0% |
| !!! | TTTTTTAAAAATTCAGTGGA+TGG | - | chr3_1:91794979-91794998 | Msa0387720:intron | 20.0% |
| ! | ATGATTTAGAAGTTGCTAAA+AGG | + | chr3_1:91792707-91792726 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTTTAGCTAAAAG+TGG | + | chr3_1:91792750-91792769 | None:intergenic | 25.0% |
| ! | AAACATTACCTTGAAATTGA+GGG | + | chr3_1:91792791-91792810 | None:intergenic | 25.0% |
| ! | TAAACATTACCTTGAAATTG+AGG | + | chr3_1:91792792-91792811 | None:intergenic | 25.0% |
| ! | GTGATCCATTTATGTAAAAA+TGG | - | chr3_1:91793031-91793050 | Msa0387720:intron | 25.0% |
| ! | TTAGTACTTGAATAATGCTT+AGG | + | chr3_1:91793265-91793284 | None:intergenic | 25.0% |
| !!! | GTTATTTCTATTGGTTGTTA+AGG | - | chr3_1:91793588-91793607 | Msa0387720:CDS | 25.0% |
| !!! | TTTTGGAATGTTGTTTTCTA+GGG | - | chr3_1:91793611-91793630 | Msa0387720:intron | 25.0% |
| ! | TTCATTTGAATTCAATTTGC+AGG | - | chr3_1:91794390-91794409 | Msa0387720:CDS | 25.0% |
| ! | TCATTTGAATTCAATTTGCA+GGG | - | chr3_1:91794391-91794410 | Msa0387720:CDS | 25.0% |
| !! | TGAAATTCAAACCTTTTCTA+AGG | - | chr3_1:91794530-91794549 | Msa0387720:CDS | 25.0% |
| ! | GAAAAGATGAATAAAAGCAA+TGG | + | chr3_1:91794556-91794575 | None:intergenic | 25.0% |
| !!! | CAGTCTTATTTTTGTTTTTC+TGG | - | chr3_1:91794689-91794708 | Msa0387720:intron | 25.0% |
| ! | AAAACCCACATTAAATGAAT+TGG | + | chr3_1:91794954-91794973 | None:intergenic | 25.0% |
| !!! | TTGATAAACCTACTTTTGTA+AGG | + | chr3_1:91795060-91795079 | None:intergenic | 25.0% |
| ! | AAAAGTAGGTTTATCAAAGT+TGG | - | chr3_1:91795063-91795082 | Msa0387720:CDS | 25.0% |
| ! | AAGTTTGGAAGTTAACAAAT+GGG | + | chr3_1:91795173-91795192 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGCTAAAAGTGGA+GGG | + | chr3_1:91792746-91792765 | None:intergenic | 30.0% |
| !!! | TTAGTTTTAGCTAAAAGTGG+AGG | + | chr3_1:91792747-91792766 | None:intergenic | 30.0% |
| GCTAAAACTAAAACTTCTCA+TGG | - | chr3_1:91792756-91792775 | Msa0387720:CDS | 30.0% | |
| ACATGCACTAAGATTATGTT+TGG | - | chr3_1:91792956-91792975 | Msa0387720:intron | 30.0% | |
| AGGAGTTATTGTAAACATTG+AGG | - | chr3_1:91793423-91793442 | Msa0387720:CDS | 30.0% | |
| GCAAAATCAAAAGAATCCAT+AGG | + | chr3_1:91793451-91793470 | None:intergenic | 30.0% | |
| TAGATGCTTCATTATCACAA+TGG | - | chr3_1:91793479-91793498 | Msa0387720:intron | 30.0% | |
| !! | TCTATTGGTTGTTAAGGTTT+TGG | - | chr3_1:91793594-91793613 | Msa0387720:intron | 30.0% |
| !!! | GTTTTGGAATGTTGTTTTCT+AGG | - | chr3_1:91793610-91793629 | Msa0387720:intron | 30.0% |
| TACATTACATCACATTCACA+AGG | + | chr3_1:91793742-91793761 | None:intergenic | 30.0% | |
| ATTTGAATCCAGCCTATAAA+AGG | + | chr3_1:91793778-91793797 | None:intergenic | 30.0% | |
| TATACAAGCATCAAGTGATT+TGG | + | chr3_1:91793815-91793834 | None:intergenic | 30.0% | |
| ATCACTTGATGCTTGTATAT+TGG | - | chr3_1:91793816-91793835 | Msa0387720:intron | 30.0% | |
| ! | TTTTGTAGTCAATGCCAATA+TGG | - | chr3_1:91793898-91793917 | Msa0387720:intron | 30.0% |
| ! | TTTGACTATGTTGGACATTT+TGG | - | chr3_1:91794093-91794112 | Msa0387720:intron | 30.0% |
| AAATATGTATGGTCACATCA+AGG | + | chr3_1:91794183-91794202 | None:intergenic | 30.0% | |
| !! | TTTTATTTGATAGGTCCTTG+TGG | - | chr3_1:91794237-91794256 | Msa0387720:intron | 30.0% |
| GAAAAAAATGGTAGATTCAG+TGG | - | chr3_1:91794265-91794284 | Msa0387720:intron | 30.0% | |
| !! | TTGTTGAAGTTTTAGCATTC+AGG | - | chr3_1:91794591-91794610 | Msa0387720:intron | 30.0% |
| TTTAGCATTCAGGTAAGATT+TGG | - | chr3_1:91794601-91794620 | Msa0387720:intron | 30.0% | |
| ! | ACATGCAATGTGAACATTTT+TGG | + | chr3_1:91794628-91794647 | None:intergenic | 30.0% |
| AGAAGCCAATTCATTTAATG+TGG | - | chr3_1:91794946-91794965 | Msa0387720:intron | 30.0% | |
| GAAGCCAATTCATTTAATGT+GGG | - | chr3_1:91794947-91794966 | Msa0387720:intron | 30.0% | |
| ! | AGTCAAATAGCTCATTTTGT+TGG | + | chr3_1:91795036-91795055 | None:intergenic | 30.0% |
| ! | TTTGACTTCCTTACAAAAGT+AGG | - | chr3_1:91795049-91795068 | Msa0387720:intron | 30.0% |
| !! | TTTTGTGTTGATGTACACAT+GGG | + | chr3_1:91795143-91795162 | None:intergenic | 30.0% |
| GAAGTTTGGAAGTTAACAAA+TGG | + | chr3_1:91795174-91795193 | None:intergenic | 30.0% | |
| TCTATCATCCCTCAATTTCA+AGG | - | chr3_1:91792780-91792799 | Msa0387720:CDS | 35.0% | |
| TGAATTAGTGGTGAAACTGT+TGG | + | chr3_1:91792935-91792954 | None:intergenic | 35.0% | |
| TTAGTGCATGTCTGAATTAG+TGG | + | chr3_1:91792947-91792966 | None:intergenic | 35.0% | |
| !!! | CCAACATTGATTTTGTGTCA+AGG | + | chr3_1:91793132-91793151 | None:intergenic | 35.0% |
| CCTTGACACAAAATCAATGT+TGG | - | chr3_1:91793129-91793148 | Msa0387720:intron | 35.0% | |
| TGATTCAACTTAGAGTTGTG+TGG | + | chr3_1:91793172-91793191 | None:intergenic | 35.0% | |
| !! | ACTAATTTGTGACCCCTTTT+AGG | - | chr3_1:91793280-91793299 | Msa0387720:intron | 35.0% |
| ACTGTTCTTGTAGCCTAAAA+GGG | + | chr3_1:91793296-91793315 | None:intergenic | 35.0% | |
| AACTGTTCTTGTAGCCTAAA+AGG | + | chr3_1:91793297-91793316 | None:intergenic | 35.0% | |
| !! | TTCTTTTCCCAAGAGCATAT+TGG | - | chr3_1:91793317-91793336 | Msa0387720:intron | 35.0% |
| TGTAAACATTGAGGAACCTA+TGG | - | chr3_1:91793432-91793451 | Msa0387720:intron | 35.0% | |
| ATGCTTCATTATCACAATGG+AGG | - | chr3_1:91793482-91793501 | Msa0387720:intron | 35.0% | |
| ATTATCACAATGGAGGATAC+AGG | - | chr3_1:91793489-91793508 | Msa0387720:intron | 35.0% | |
| !!! | TGTTGTTTTCTAGGGAAAGA+AGG | - | chr3_1:91793619-91793638 | Msa0387720:intron | 35.0% |
| !! | GTTGTTTTCTAGGGAAAGAA+GGG | - | chr3_1:91793620-91793639 | Msa0387720:intron | 35.0% |
| ACAAGATTTGAGTGTTCTCT+TGG | + | chr3_1:91793662-91793681 | None:intergenic | 35.0% | |
| AAGAGAACACTCAAATCTTG+TGG | - | chr3_1:91793661-91793680 | Msa0387720:intron | 35.0% | |
| ! | CATTTTGCTGCTCCTTTTAT+AGG | - | chr3_1:91793763-91793782 | Msa0387720:intron | 35.0% |
| ! | AATCAGATTGAAGGTGTGTT+CGG | - | chr3_1:91793951-91793970 | Msa0387720:CDS | 35.0% |
| !! | TGCCATTCTTGTTGTTTCAT+AGG | - | chr3_1:91794005-91794024 | Msa0387720:CDS | 35.0% |
| AGCCTATGAAACAACAAGAA+TGG | + | chr3_1:91794010-91794029 | None:intergenic | 35.0% | |
| ! | AGGTTCATGAAAAGTACAAC+TGG | + | chr3_1:91794146-91794165 | None:intergenic | 35.0% |
| ! | AGTTGTACTTTTCATGAACC+TGG | - | chr3_1:91794145-91794164 | Msa0387720:intron | 35.0% |
| !!! | CATTTTTTTCCTGAACCACA+AGG | + | chr3_1:91794255-91794274 | None:intergenic | 35.0% |
| CTTGTGGTTCAGGAAAAAAA+TGG | - | chr3_1:91794253-91794272 | Msa0387720:intron | 35.0% | |
| AATGGTAGATTCAGTGGTAA+AGG | - | chr3_1:91794271-91794290 | Msa0387720:intron | 35.0% | |
| GATTCAGTGGTAAAGGAATA+TGG | - | chr3_1:91794278-91794297 | Msa0387720:intron | 35.0% | |
| ! | AAAAGCAATGGCCTTAGAAA+AGG | + | chr3_1:91794544-91794563 | None:intergenic | 35.0% |
| TTATATGCATGTTGCAACCT+CGG | - | chr3_1:91794762-91794781 | Msa0387720:intron | 35.0% | |
| ! | AGCTCATTTTGTTGGAGAAA+AGG | + | chr3_1:91795028-91795047 | None:intergenic | 35.0% |
| GTAGGTTTATCAAAGTTGGA+AGG | - | chr3_1:91795067-91795086 | Msa0387720:CDS | 35.0% | |
| !! | CTTTTGTGTTGATGTACACA+TGG | + | chr3_1:91795144-91795163 | None:intergenic | 35.0% |
| ACTTAGAGTTGTGTGGTGTT+TGG | + | chr3_1:91793165-91793184 | None:intergenic | 40.0% | |
| CTGTTCTTGTAGCCTAAAAG+GGG | + | chr3_1:91793295-91793314 | None:intergenic | 40.0% | |
| CTCATCCAATAAAGCTGAAG+AGG | + | chr3_1:91793347-91793366 | None:intergenic | 40.0% | |
| !! | CTCTTCAGCTTTATTGGATG+AGG | - | chr3_1:91793345-91793364 | Msa0387720:intron | 40.0% |
| TTATTGGATGAGGAAGTGAG+AGG | - | chr3_1:91793355-91793374 | Msa0387720:intron | 40.0% | |
| TGGATTACTCAAAGCTGTTG+AGG | - | chr3_1:91793390-91793409 | Msa0387720:intron | 40.0% | |
| AAAGCTGTTGAGGATCAACA+TGG | - | chr3_1:91793400-91793419 | Msa0387720:CDS | 40.0% | |
| !! | AGTGATTTGGTTCAGCATGA+TGG | + | chr3_1:91793802-91793821 | None:intergenic | 40.0% |
| !! | CAAAAGCACCGATAGAAATG+CGG | + | chr3_1:91793883-91793902 | None:intergenic | 40.0% |
| TGTAGTCAATGCCAATATGG+AGG | - | chr3_1:91793901-91793920 | Msa0387720:intron | 40.0% | |
| AGGATTACTGACCTCCATAT+TGG | + | chr3_1:91793915-91793934 | None:intergenic | 40.0% | |
| GAATGCTTATAGTCATGTGC+TGG | + | chr3_1:91794063-91794082 | None:intergenic | 40.0% | |
| !! | TCAAGGTAGATATTGACTCC+AGG | + | chr3_1:91794166-91794185 | None:intergenic | 40.0% |
| GGAATATGGAAATTGCCTAC+TGG | - | chr3_1:91794292-91794311 | Msa0387720:intron | 40.0% | |
| TGAATTCAATTTGCAGGGTG+AGG | - | chr3_1:91794396-91794415 | Msa0387720:CDS | 40.0% | |
| AGAGAAGTCAAAGAAGAGAC+AGG | - | chr3_1:91794439-91794458 | Msa0387720:CDS | 40.0% | |
| CTCTGAATGTTAAATGACCG+AGG | + | chr3_1:91794782-91794801 | None:intergenic | 40.0% | |
| GTCATTTAACATTCAGAGCC+AGG | - | chr3_1:91794784-91794803 | Msa0387720:intron | 40.0% | |
| AATTCAGTGGATGGCAATTG+AGG | - | chr3_1:91794988-91795007 | Msa0387720:intron | 40.0% | |
| !! | AAGTTGGAAGGAAAGTACTC+AGG | - | chr3_1:91795079-91795098 | Msa0387720:CDS | 40.0% |
| AGGCAGACCAATATGCTCTT+GGG | + | chr3_1:91793327-91793346 | None:intergenic | 45.0% | |
| ! | GTCTGCCTCTTCAGCTTTAT+TGG | - | chr3_1:91793339-91793358 | Msa0387720:intron | 45.0% |
| GTGAGAGGTAGATGTACTAC+TGG | - | chr3_1:91793370-91793389 | Msa0387720:intron | 45.0% | |
| ! | TTGCTGCTCCTTTTATAGGC+TGG | - | chr3_1:91793767-91793786 | Msa0387720:intron | 45.0% |
| !! | GGAATGGTATCAGGAGTGTT+GGG | + | chr3_1:91793845-91793864 | None:intergenic | 45.0% |
| ! | AGGAATGGTATCAGGAGTGT+TGG | + | chr3_1:91793846-91793865 | None:intergenic | 45.0% |
| GCATTTGCAGGAATGGTATC+AGG | + | chr3_1:91793854-91793873 | None:intergenic | 45.0% | |
| !! | GTGAGAAGCATTTGCAGGAA+TGG | + | chr3_1:91793861-91793880 | None:intergenic | 45.0% |
| GCTTCTCACCGCATTTCTAT+CGG | - | chr3_1:91793872-91793891 | Msa0387720:intron | 45.0% | |
| TGCTTATAGTCATGTGCTGG+TGG | + | chr3_1:91794060-91794079 | None:intergenic | 45.0% | |
| TTGATAGGTCCTTGTGGTTC+AGG | - | chr3_1:91794243-91794262 | Msa0387720:intron | 45.0% | |
| ACCTCATTAACAGCTCCAGT+AGG | + | chr3_1:91794310-91794329 | None:intergenic | 45.0% | |
| TTCAGAAATTGAGGCAGCTC+AGG | - | chr3_1:91794808-91794827 | Msa0387720:intron | 45.0% | |
| !!! | TTATTTTATTTTTATTTGAT+AGG | - | chr3_1:91794228-91794247 | Msa0387720:intron | 5.0% |
| GAGGCAGACCAATATGCTCT+TGG | + | chr3_1:91793328-91793347 | None:intergenic | 50.0% | |
| GCTGTTGAGGATCAACATGG+AGG | - | chr3_1:91793403-91793422 | Msa0387720:CDS | 50.0% | |
| TCTAGGGAAAGAAGGGAGTG+TGG | - | chr3_1:91793627-91793646 | Msa0387720:intron | 50.0% | |
| TCTTGTGGCTTCTGCTGTTG+AGG | - | chr3_1:91793676-91793695 | Msa0387720:intron | 50.0% | |
| !! | ATGCGGTGAGAAGCATTTGC+AGG | + | chr3_1:91793866-91793885 | None:intergenic | 50.0% |
| TGTCTGACACCGAGACATGT+TGG | - | chr3_1:91793974-91793993 | Msa0387720:CDS | 50.0% | |
| GTCTGACACCGAGACATGTT+GGG | - | chr3_1:91793975-91793994 | Msa0387720:CDS | 50.0% | |
| ACGAGACACCCAACATGTCT+CGG | + | chr3_1:91793986-91794005 | None:intergenic | 50.0% | |
| GCCTACTGGAGCTGTTAATG+AGG | - | chr3_1:91794306-91794325 | Msa0387720:intron | 50.0% | |
| GAGCCAGGCTTCAGAAATTG+AGG | - | chr3_1:91794799-91794818 | Msa0387720:intron | 50.0% | |
| !! | CTGCCTCAATTTCTGAAGCC+TGG | + | chr3_1:91794805-91794824 | None:intergenic | 50.0% |
| GTACACATGGGACTTGCAAG+AGG | + | chr3_1:91795131-91795150 | None:intergenic | 50.0% | |
| GTGGAGGGACAGAAGATGTG+AGG | + | chr3_1:91792731-91792750 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 91792663 | 91795198 | 91792663 | ID=Msa0387720;Name=Msa0387720 |
| chr3_1 | mRNA | 91792663 | 91795198 | 91792663 | ID=Msa0387720-mRNA-1;Parent=Msa0387720;Name=Msa0387720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.62|0.33|1|1|1|9|0|342 |
| chr3_1 | exon | 91795060 | 91795198 | 91795060 | ID=Msa0387720-mRNA-1:exon:25740;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91794351 | 91794559 | 91794351 | ID=Msa0387720-mRNA-1:exon:25739;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91794164 | 91794229 | 91794164 | ID=Msa0387720-mRNA-1:exon:25738;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91793939 | 91794076 | 91793939 | ID=Msa0387720-mRNA-1:exon:25737;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91793534 | 91793611 | 91793534 | ID=Msa0387720-mRNA-1:exon:25736;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91793399 | 91793449 | 91793399 | ID=Msa0387720-mRNA-1:exon:25735;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91793249 | 91793283 | 91793249 | ID=Msa0387720-mRNA-1:exon:25734;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91793032 | 91793140 | 91793032 | ID=Msa0387720-mRNA-1:exon:25733;Parent=Msa0387720-mRNA-1 |
| chr3_1 | exon | 91792663 | 91792866 | 91792663 | ID=Msa0387720-mRNA-1:exon:25732;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91795060 | 91795198 | 91795060 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91794351 | 91794559 | 91794351 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91794164 | 91794229 | 91794164 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91793939 | 91794076 | 91793939 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91793534 | 91793611 | 91793534 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91793399 | 91793449 | 91793399 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91793249 | 91793283 | 91793249 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91793032 | 91793140 | 91793032 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| chr3_1 | CDS | 91792663 | 91792866 | 91792663 | ID=Msa0387720-mRNA-1:cds;Parent=Msa0387720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
