Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231170 | XP_003592974.2 | 92.559 | 551 | 6 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1040 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231170 | sp|O23693|MLO4_ARATH | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231170 | G7INP7 | 92.559 | 551 | 6 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1040 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231170 | Msa0323250 | 0.961492 | 9.152072e-120 | -8.615850e-47 |
| Msa0231170 | Msa0323340 | 0.813410 | 2.596607e-51 | -8.615850e-47 |
| Msa0231170 | Msa0881340 | 0.964913 | 6.265852e-124 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231170 | MtrunA17_Chr2g0277471 | 92.559 | 551 | 6 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1040 |
| Msa0231170 | MtrunA17_Chr2g0317801 | 44.181 | 464 | 215 | 4 | 1 | 428 | 1 | 456 | 1.05e-127 | 383 |
| Msa0231170 | MtrunA17_Chr5g0405641 | 47.165 | 388 | 165 | 8 | 1 | 350 | 2 | 387 | 5.21e-102 | 311 |
| Msa0231170 | MtrunA17_Chr2g0326301 | 34.947 | 475 | 260 | 10 | 8 | 436 | 7 | 478 | 2.02e-83 | 270 |
| Msa0231170 | MtrunA17_Chr3g0144171 | 33.835 | 532 | 288 | 15 | 1 | 487 | 1 | 513 | 1.75e-82 | 266 |
| Msa0231170 | MtrunA17_Chr6g0462051 | 34.656 | 479 | 254 | 13 | 9 | 437 | 9 | 478 | 1.52e-81 | 265 |
| Msa0231170 | MtrunA17_Chr3g0145831 | 34.879 | 453 | 239 | 8 | 10 | 414 | 13 | 457 | 2.75e-76 | 249 |
| Msa0231170 | MtrunA17_Chr5g0407381 | 31.676 | 543 | 298 | 16 | 9 | 507 | 28 | 541 | 2.01e-75 | 248 |
| Msa0231170 | MtrunA17_Chr8g0370181 | 32.135 | 473 | 268 | 8 | 9 | 438 | 38 | 500 | 5.10e-73 | 242 |
| Msa0231170 | MtrunA17_Chr8g0337941 | 31.656 | 477 | 267 | 7 | 9 | 431 | 12 | 483 | 8.35e-73 | 240 |
| Msa0231170 | MtrunA17_Chr2g0291441 | 34.423 | 459 | 246 | 10 | 6 | 425 | 5 | 447 | 5.46e-71 | 234 |
| Msa0231170 | MtrunA17_Chr8g0337931 | 31.924 | 473 | 254 | 10 | 15 | 430 | 8 | 469 | 2.14e-67 | 225 |
| Msa0231170 | MtrunA17_Chr4g0040611 | 28.210 | 514 | 314 | 10 | 4 | 481 | 2 | 496 | 5.20e-61 | 210 |
| Msa0231170 | MtrunA17_Chr3g0144201 | 32.278 | 316 | 185 | 5 | 9 | 299 | 11 | 322 | 1.19e-47 | 174 |
| Msa0231170 | MtrunA17_Chr3g0144201 | 33.714 | 175 | 106 | 4 | 313 | 485 | 398 | 564 | 7.55e-18 | 86.7 |
| Msa0231170 | MtrunA17_Chr5g0405651 | 50.000 | 80 | 37 | 1 | 360 | 436 | 1 | 80 | 3.43e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231170 | AT1G11000.1 | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 661 |
| Msa0231170 | AT1G11000.3 | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 661 |
| Msa0231170 | AT1G11000.2 | 65.842 | 404 | 105 | 3 | 1 | 373 | 1 | 402 | 0.0 | 521 |
| Msa0231170 | AT5G53760.2 | 43.633 | 479 | 219 | 6 | 9 | 442 | 16 | 488 | 1.57e-134 | 402 |
| Msa0231170 | AT5G53760.1 | 43.633 | 479 | 219 | 6 | 9 | 442 | 16 | 488 | 1.57e-134 | 402 |
| Msa0231170 | AT1G26700.1 | 43.121 | 487 | 228 | 6 | 9 | 450 | 10 | 492 | 4.50e-133 | 397 |
| Msa0231170 | AT1G26700.2 | 43.121 | 487 | 228 | 6 | 9 | 450 | 10 | 492 | 4.50e-133 | 397 |
| Msa0231170 | AT2G33670.1 | 31.969 | 513 | 290 | 9 | 9 | 488 | 15 | 501 | 1.30e-84 | 271 |
| Msa0231170 | AT4G02600.2 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 4.39e-83 | 267 |
| Msa0231170 | AT4G02600.1 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 4.39e-83 | 267 |
| Msa0231170 | AT1G61560.1 | 33.122 | 474 | 268 | 10 | 9 | 436 | 8 | 478 | 9.77e-82 | 265 |
| Msa0231170 | AT4G24250.1 | 32.773 | 476 | 273 | 6 | 4 | 440 | 2 | 469 | 1.61e-81 | 262 |
| Msa0231170 | AT2G44110.2 | 33.042 | 457 | 263 | 5 | 8 | 427 | 5 | 455 | 2.08e-80 | 259 |
| Msa0231170 | AT2G44110.1 | 33.260 | 457 | 261 | 6 | 8 | 427 | 5 | 454 | 6.86e-80 | 258 |
| Msa0231170 | AT2G39200.1 | 33.693 | 463 | 260 | 10 | 9 | 428 | 6 | 464 | 3.19e-79 | 259 |
| Msa0231170 | AT1G61560.4 | 32.563 | 476 | 268 | 12 | 9 | 436 | 8 | 478 | 4.84e-77 | 253 |
| Msa0231170 | AT1G42560.1 | 33.551 | 459 | 248 | 9 | 9 | 423 | 14 | 459 | 1.60e-76 | 248 |
| Msa0231170 | AT1G11310.1 | 32.285 | 477 | 271 | 9 | 9 | 436 | 8 | 481 | 2.14e-76 | 251 |
| Msa0231170 | AT1G61560.10 | 33.180 | 434 | 241 | 10 | 9 | 396 | 8 | 438 | 2.46e-73 | 240 |
| Msa0231170 | AT2G17430.1 | 32.450 | 453 | 258 | 8 | 4 | 421 | 26 | 465 | 1.28e-72 | 240 |
| Msa0231170 | AT5G65970.1 | 33.258 | 442 | 240 | 8 | 9 | 414 | 34 | 456 | 2.93e-69 | 232 |
| Msa0231170 | AT2G17480.1 | 32.353 | 442 | 257 | 7 | 9 | 414 | 39 | 474 | 2.32e-65 | 223 |
| Msa0231170 | AT4G24250.2 | 32.274 | 409 | 231 | 5 | 4 | 373 | 2 | 403 | 3.96e-65 | 217 |
| Msa0231170 | AT3G45290.1 | 31.670 | 461 | 268 | 11 | 3 | 427 | 9 | 458 | 5.33e-65 | 219 |
| Msa0231170 | AT1G61560.7 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 3.62e-64 | 214 |
| Msa0231170 | AT1G61560.9 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 3.62e-64 | 214 |
| Msa0231170 | AT1G61560.2 | 31.981 | 419 | 236 | 10 | 64 | 436 | 1 | 416 | 5.19e-64 | 217 |
| Msa0231170 | AT1G61560.3 | 31.981 | 419 | 236 | 10 | 64 | 436 | 1 | 416 | 5.19e-64 | 217 |
| Msa0231170 | AT1G11310.2 | 31.884 | 414 | 230 | 9 | 9 | 373 | 8 | 418 | 1.50e-61 | 208 |
| Msa0231170 | AT1G61560.6 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.88e-59 | 201 |
| Msa0231170 | AT1G61560.8 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.88e-59 | 201 |
| Msa0231170 | AT1G61560.5 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.88e-59 | 201 |
| Msa0231170 | AT1G11310.3 | 30.332 | 422 | 242 | 9 | 64 | 436 | 1 | 419 | 3.28e-57 | 199 |
| Msa0231170 | AT1G42560.2 | 31.283 | 374 | 200 | 9 | 9 | 338 | 14 | 374 | 5.03e-49 | 173 |
| Msa0231170 | AT5G65970.2 | 34.899 | 298 | 176 | 6 | 4 | 300 | 31 | 311 | 9.32e-48 | 172 |
Find 105 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTCTTTGTCTGCTTCT+TGG | 0.198947 | 2_2:+3368877 | Msa0231170:CDS |
| CATACAGTTTGTGATATTTC+AGG | 0.214387 | 2_2:+3372358 | Msa0231170:CDS |
| TCTCATCGATCGTTGATTCT+AGG | 0.269205 | 2_2:-3373164 | None:intergenic |
| AACTTTGCAGCTGGCCGCTT+TGG | 0.282048 | 2_2:+3371916 | Msa0231170:intron |
| TACTCTATAGAATTCCTTCT+TGG | 0.285750 | 2_2:-3373454 | None:intergenic |
| TTCATGGCATTCTAGGAATA+AGG | 0.290919 | 2_2:+3371800 | Msa0231170:CDS |
| ATCATCATTCGGTTGACATC+TGG | 0.296844 | 2_2:+3372671 | Msa0231170:CDS |
| CCTGTGAAACTATTACATTC+AGG | 0.321958 | 2_2:-3372865 | None:intergenic |
| GCAGTGTTCTTGTTCAGTTC+TGG | 0.326834 | 2_2:+3372822 | Msa0231170:intron |
| GAGCGTTCTATCTACCGTTT+TGG | 0.346359 | 2_2:+3368902 | Msa0231170:CDS |
| GACGAATTTCATGGCATTCT+AGG | 0.354070 | 2_2:+3371793 | Msa0231170:CDS |
| ATTCAAAGACTCTAAGTCTA+AGG | 0.354684 | 2_2:-3373232 | None:intergenic |
| TTGAAATGGCCTCATTCATA+TGG | 0.364022 | 2_2:+3372482 | Msa0231170:CDS |
| GCAGGAATCCTATACTAATA+TGG | 0.364635 | 2_2:+3371301 | Msa0231170:CDS |
| ATATAGAGTTGATGCTGCTT+GGG | 0.376448 | 2_2:+3369978 | Msa0231170:intron |
| ATGATCCATAACAATATATC+TGG | 0.379893 | 2_2:-3372338 | None:intergenic |
| ATGTTACCTCTCCACATTGA+TGG | 0.395745 | 2_2:-3370192 | None:intergenic |
| GATATAGAGTTGATGCTGCT+TGG | 0.400458 | 2_2:+3369977 | Msa0231170:intron |
| GAACCATTTGTTTCATATGA+AGG | 0.417481 | 2_2:+3370296 | Msa0231170:CDS |
| ATTACCATCCATATTAGTAT+AGG | 0.427214 | 2_2:-3371309 | None:intergenic |
| GCTTGAAATCTGGCAGCAGC+AGG | 0.448228 | 2_2:+3372259 | Msa0231170:CDS |
| AATCATGACATGCTCAATCA+TGG | 0.454257 | 2_2:-3370107 | None:intergenic |
| TTTACTTGTGTTCTTGCACT+TGG | 0.457809 | 2_2:-3372284 | None:intergenic |
| TCTCTTACACCAACTGTGTA+AGG | 0.457899 | 2_2:-3373094 | None:intergenic |
| GATGTAAGAAGAAATTATAA+TGG | 0.460054 | 2_2:+3368784 | Msa0231170:exon |
| TCATCATTCGGTTGACATCT+GGG | 0.460436 | 2_2:+3372672 | Msa0231170:CDS |
| CTCATCGATCGTTGATTCTA+GGG | 0.460757 | 2_2:-3373163 | None:intergenic |
| TTGGTGCAGATGGGAAAATC+AGG | 0.462485 | 2_2:+3370935 | Msa0231170:CDS |
| GCACCACTATACAGTCCCTT+TGG | 0.464450 | 2_2:-3370166 | None:intergenic |
| AGATCTATAGTTGGTGCAGA+TGG | 0.465675 | 2_2:+3370925 | Msa0231170:intron |
| CTGTATAGTTGTCTCGCTGT+TGG | 0.467163 | 2_2:+3370368 | Msa0231170:CDS |
| CTGTGAAACTATTACATTCA+GGG | 0.479207 | 2_2:-3372864 | None:intergenic |
| ACGCGTCTCATCCGTGGAGC+AGG | 0.483102 | 2_2:+3371283 | Msa0231170:CDS |
| AGACCTTCATATGAAACAAA+TGG | 0.484020 | 2_2:-3370299 | None:intergenic |
| ACCATTACATGATCATCATT+CGG | 0.484425 | 2_2:+3372660 | Msa0231170:CDS |
| CATGCAGAATGCCTTTGAAA+TGG | 0.490679 | 2_2:+3372468 | Msa0231170:intron |
| GATTACCTCGCACTCCGTCT+TGG | 0.495055 | 2_2:+3371586 | Msa0231170:CDS |
| CGAATTGATATGTACGGGTT+CGG | 0.496092 | 2_2:-3373322 | None:intergenic |
| TGTGTTTGTAGATCTATAGT+TGG | 0.500413 | 2_2:+3370916 | Msa0231170:intron |
| CCTGAATGTAATAGTTTCAC+AGG | 0.501576 | 2_2:+3372865 | Msa0231170:CDS |
| GACGAGATAACAGTGGTATC+CGG | 0.506598 | 2_2:+3373189 | Msa0231170:CDS |
| ATATGATTAGTTTAGTTGAA+AGG | 0.511926 | 2_2:-3368622 | None:intergenic |
| AGTTCTACTGCATACCAAGA+AGG | 0.524545 | 2_2:+3373440 | Msa0231170:three_prime_UTR |
| TGCCTCGGTTGTTACTGTCA+TGG | 0.525886 | 2_2:+3368859 | Msa0231170:CDS |
| GATGGGATCGCGATGTAAGA+AGG | 0.529541 | 2_2:+3373044 | Msa0231170:intron |
| TTATGAAAATCATATGATAA+CGG | 0.534435 | 2_2:-3371748 | None:intergenic |
| TAAATATATGGTTAGAAGCA+TGG | 0.536505 | 2_2:+3371768 | Msa0231170:CDS |
| TAGAATCAACGATCGATGAG+AGG | 0.539794 | 2_2:+3373166 | Msa0231170:CDS |
| ATTCCAAAGGGACTGTATAG+TGG | 0.539888 | 2_2:+3370163 | Msa0231170:CDS |
| TCCATCACGCGTCTCATCCG+TGG | 0.543333 | 2_2:+3371277 | Msa0231170:CDS |
| TTAGAGATTCCTTACACAGT+TGG | 0.545309 | 2_2:+3373085 | Msa0231170:CDS |
| AAGGTCTTGAGCAGCTGCAC+CGG | 0.549157 | 2_2:+3370315 | Msa0231170:CDS |
| ACCTACATATTCAGTTGCCT+CGG | 0.550052 | 2_2:+3368844 | Msa0231170:CDS |
| AGCATGGAGGACGAATTTCA+TGG | 0.554354 | 2_2:+3371784 | Msa0231170:CDS |
| TAGTGCGAATTGATATGTAC+GGG | 0.554406 | 2_2:-3373327 | None:intergenic |
| TATGAATGAGGCCATTTCAA+AGG | 0.559827 | 2_2:-3372479 | None:intergenic |
| TCTCTGGAGAAAATTAAAGA+AGG | 0.561099 | 2_2:+3369579 | Msa0231170:CDS |
| TGCATCTTTGTGAACATCCA+TGG | 0.561195 | 2_2:+3371954 | Msa0231170:CDS |
| GGGAAGGTCTTGTTCAGCAC+AGG | 0.563562 | 2_2:-3370086 | None:intergenic |
| AATTATAATGGAACATGCTG+TGG | 0.564038 | 2_2:+3368796 | Msa0231170:exon |
| GATCTATAGTTGGTGCAGAT+GGG | 0.565228 | 2_2:+3370926 | Msa0231170:intron |
| AGAATCAACGATCGATGAGA+GGG | 0.566055 | 2_2:+3373167 | Msa0231170:CDS |
| AAAGCAGATGGGATCCAGAA+AGG | 0.568854 | 2_2:-3368690 | None:intergenic |
| GATGAAACTACTATTCCAAA+GGG | 0.569451 | 2_2:+3370151 | Msa0231170:CDS |
| CTTATCGATGGAAATTTGCA+AGG | 0.569789 | 2_2:+3370969 | Msa0231170:CDS |
| TGTTAGCACAAAGCGCAAGA+TGG | 0.570847 | 2_2:+3370014 | Msa0231170:CDS |
| ATGTACGGGTTCGGACAGAT+CGG | 0.573862 | 2_2:-3373313 | None:intergenic |
| GAATCCTATACTAATATGGA+TGG | 0.575461 | 2_2:+3371305 | Msa0231170:CDS |
| ATGGAACATGCTGTGGAGCA+AGG | 0.578849 | 2_2:+3368803 | Msa0231170:CDS |
| GGCCTCATTCATATGGACAT+TGG | 0.579307 | 2_2:+3372489 | Msa0231170:CDS |
| TACCAATGTCCATATGAATG+AGG | 0.584051 | 2_2:-3372491 | None:intergenic |
| GCTACGGTGGCTCTTATCGA+TGG | 0.590725 | 2_2:+3370957 | Msa0231170:CDS |
| TGATCAAATCAAAAGTGAGT+AGG | 0.591418 | 2_2:+3368552 | None:intergenic |
| ATCATGACATGCTCAATCAT+GGG | 0.591999 | 2_2:-3370106 | None:intergenic |
| GTTTAGTTGAAAGGTGCATG+TGG | 0.594354 | 2_2:-3368613 | None:intergenic |
| CTTGAAATCTGGCAGCAGCA+GGG | 0.595998 | 2_2:+3372260 | Msa0231170:CDS |
| ACCGAATGATGATCATGTAA+TGG | 0.596192 | 2_2:-3372661 | None:intergenic |
| GTAGTGCGAATTGATATGTA+CGG | 0.599536 | 2_2:-3373328 | None:intergenic |
| AGTGGTTGAAGAAGACAAGA+AGG | 0.601038 | 2_2:+3369541 | Msa0231170:intron |
| AGATGAAACTACTATTCCAA+AGG | 0.604783 | 2_2:+3370150 | Msa0231170:CDS |
| CAGATGGGAAAATCAGGCTA+CGG | 0.607830 | 2_2:+3370941 | Msa0231170:CDS |
| AGTATAGGATTCCTGCTCCA+CGG | 0.621498 | 2_2:-3371294 | None:intergenic |
| TGAAAGGTGCATGTGGAGAG+AGG | 0.623118 | 2_2:-3368606 | None:intergenic |
| ACACAAGTAAAGCCGCGCGA+TGG | 0.629938 | 2_2:+3372296 | Msa0231170:CDS |
| TGACATGCTCAATCATGGGA+AGG | 0.634182 | 2_2:-3370102 | None:intergenic |
| GTTGAAGAAGACAAGAAGGA+AGG | 0.636202 | 2_2:+3369545 | Msa0231170:CDS |
| TGTTGGTTTAGCAATGAGCA+AGG | 0.642368 | 2_2:+3370385 | Msa0231170:CDS |
| AGTTGTTCGAGTTAGCGTGC+CGG | 0.646338 | 2_2:-3373208 | None:intergenic |
| ATGGGAAAATCAGGCTACGG+TGG | 0.646605 | 2_2:+3370944 | Msa0231170:CDS |
| TCCACGGATGAGACGCGTGA+TGG | 0.651042 | 2_2:-3371278 | None:intergenic |
| TGTGAAACTATTACATTCAG+GGG | 0.651741 | 2_2:-3372863 | None:intergenic |
| AGAACAACAAAGTGATGAGG+CGG | 0.652562 | 2_2:+3371238 | Msa0231170:CDS |
| CAATGTTGTCAACGTAGAGG+AGG | 0.653582 | 2_2:+3373353 | Msa0231170:CDS |
| TGAAACCAAGACGGAGTGCG+AGG | 0.667590 | 2_2:-3371591 | None:intergenic |
| GTAAGAACAACAAAGTGATG+AGG | 0.668841 | 2_2:+3371235 | Msa0231170:CDS |
| ACCGAGGCAACTGAATATGT+AGG | 0.669841 | 2_2:-3368845 | None:intergenic |
| TGCACTCCATCAATGTGGAG+AGG | 0.673997 | 2_2:+3370186 | Msa0231170:CDS |
| CAACAATGTTGTCAACGTAG+AGG | 0.682543 | 2_2:+3373350 | Msa0231170:CDS |
| TTACAGTGATGAAACCAAGA+CGG | 0.701613 | 2_2:-3371600 | None:intergenic |
| AGTGGTGCACTCCATCAATG+TGG | 0.709568 | 2_2:+3370181 | Msa0231170:CDS |
| GACCATGACAGTAACAACCG+AGG | 0.728387 | 2_2:-3368861 | None:intergenic |
| ACTATAGTATAAATCCAAAG+CGG | 0.728488 | 2_2:-3371930 | None:intergenic |
| AGACGCGTGATGGAAAACAA+AGG | 0.729624 | 2_2:-3371268 | None:intergenic |
| TGAGAGGGACGAGATAACAG+TGG | 0.741797 | 2_2:+3373182 | Msa0231170:CDS |
| ATATATGGTTAGAAGCATGG+AGG | 0.760811 | 2_2:+3371771 | Msa0231170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATAAAAGAATC+AGG | - | chr2_2:3369354-3369373 | None:intergenic | 10.0% |
| !!! | ATATGATTTTCATAAATATA+TGG | + | chr2_2:3371756-3371775 | Msa0231170:CDS | 10.0% |
| !!! | AAAAGTGTTTTTTTAATGAA+AGG | + | chr2_2:3368718-3368737 | Msa0231170:five_prime_UTR | 15.0% |
| !!! | TTTAATTGATTTTATTCTAC+AGG | + | chr2_2:3371213-3371232 | Msa0231170:intron | 15.0% |
| !! | TATAAAATATTATATCAGTG+AGG | - | chr2_2:3371677-3371696 | None:intergenic | 15.0% |
| !! | TTATGAAAATCATATGATAA+CGG | - | chr2_2:3371751-3371770 | None:intergenic | 15.0% |
| !!! | ATATGATTAGTTTAGTTGAA+AGG | - | chr2_2:3368625-3368644 | None:intergenic | 20.0% |
| !! | GATGTAAGAAGAAATTATAA+TGG | + | chr2_2:3368784-3368803 | Msa0231170:exon | 20.0% |
| !! | CAGTTTATTTGGTATATATT+TGG | - | chr2_2:3369030-3369049 | None:intergenic | 20.0% |
| !! | AATAACAAGCAAATAGTTAA+GGG | - | chr2_2:3369102-3369121 | None:intergenic | 20.0% |
| !! | AAATAACAAGCAAATAGTTA+AGG | - | chr2_2:3369103-3369122 | None:intergenic | 20.0% |
| !!! | TTATTTGTTATTTTGCTACT+TGG | + | chr2_2:3369117-3369136 | Msa0231170:intron | 20.0% |
| !!! | TGTTGAAATTGCTTTTTATT+TGG | + | chr2_2:3369157-3369176 | Msa0231170:intron | 20.0% |
| !! | CAAATTTATTACATTCTGAT+AGG | + | chr2_2:3369297-3369316 | Msa0231170:intron | 20.0% |
| !! | GTTAGTGTTTGATATTAATT+AGG | + | chr2_2:3369319-3369338 | Msa0231170:intron | 20.0% |
| !! | TTTATTGTTATACCTAAGAT+TGG | + | chr2_2:3370428-3370447 | Msa0231170:intron | 20.0% |
| !! | AAAATATGTAAGTATAAGGT+TGG | - | chr2_2:3371486-3371505 | None:intergenic | 20.0% |
| !!! | ACCTTATACTTACATATTTT+AGG | + | chr2_2:3371486-3371505 | Msa0231170:intron | 20.0% |
| !!! | CCTTATACTTACATATTTTA+GGG | + | chr2_2:3371487-3371506 | Msa0231170:intron | 20.0% |
| !! | TTATTATACATACAATTGCA+GGG | - | chr2_2:3372103-3372122 | None:intergenic | 20.0% |
| !! | ATTATTATACATACAATTGC+AGG | - | chr2_2:3372104-3372123 | None:intergenic | 20.0% |
| !!! | TTCTAAGAATTTCTTCATTT+TGG | - | chr2_2:3372149-3372168 | None:intergenic | 20.0% |
| !! | AAATTCTTAGAAAATCATGT+TGG | + | chr2_2:3372157-3372176 | Msa0231170:intron | 20.0% |
| !! | AAAAACCAGATATATTGTTA+TGG | + | chr2_2:3372333-3372352 | Msa0231170:CDS | 20.0% |
| !!! | TTTTGTTTACCTTTCCAAAA+CGG | - | chr2_2:3368919-3368938 | None:intergenic | 25.0% |
| !!! | TGCTTTTTATTTGGTATCTT+AGG | + | chr2_2:3369166-3369185 | Msa0231170:intron | 25.0% |
| ! | TTCTACTGTTCAAACTTATT+AGG | - | chr2_2:3369428-3369447 | None:intergenic | 25.0% |
| ! | ATTTAACTGTGAATGTAACT+TGG | + | chr2_2:3369447-3369466 | Msa0231170:intron | 25.0% |
| !!! | GAAACTACTAGTTGTTTTAT+TGG | - | chr2_2:3369474-3369493 | None:intergenic | 25.0% |
| !!! | GACATGAAACTTATTTTTCT+TGG | + | chr2_2:3369508-3369527 | Msa0231170:intron | 25.0% |
| !!! | TTTAGATCAAGTTTTATTGC+AGG | - | chr2_2:3369794-3369813 | None:intergenic | 25.0% |
| ! | ATGCTTCAATTGTAAAATGA+AGG | + | chr2_2:3370218-3370237 | Msa0231170:intron | 25.0% |
| ! | TCTTAGGTATAACAATAAAC+TGG | - | chr2_2:3370427-3370446 | None:intergenic | 25.0% |
| !! | ATGTAAGAGCATATTCAATA+AGG | + | chr2_2:3370460-3370479 | Msa0231170:intron | 25.0% |
| !! | TGTAAGAGCATATTCAATAA+GGG | + | chr2_2:3370461-3370480 | Msa0231170:intron | 25.0% |
| !! | TTCTTATATTTTCTACCCAA+TGG | + | chr2_2:3370520-3370539 | Msa0231170:intron | 25.0% |
| ! | TTTCATACACTACTATCAAT+TGG | - | chr2_2:3370742-3370761 | None:intergenic | 25.0% |
| ! | ATTACATTAGAAACAAACAG+TGG | - | chr2_2:3371083-3371102 | None:intergenic | 25.0% |
| !! | TTTTCATCATAATCACACTA+TGG | + | chr2_2:3371106-3371125 | Msa0231170:intron | 25.0% |
| ! | ATTACCATCCATATTAGTAT+AGG | - | chr2_2:3371312-3371331 | None:intergenic | 25.0% |
| ! | AAGCAGATTTAGAAGTAAAA+AGG | - | chr2_2:3371459-3371478 | None:intergenic | 25.0% |
| ! | CCCTAAAATATGTAAGTATA+AGG | - | chr2_2:3371490-3371509 | None:intergenic | 25.0% |
| ! | TCCTGAGAATTTAAAAAGTA+GGG | - | chr2_2:3371718-3371737 | None:intergenic | 25.0% |
| ! | TTCCTGAGAATTTAAAAAGT+AGG | - | chr2_2:3371719-3371738 | None:intergenic | 25.0% |
| ! | TAAATATATGGTTAGAAGCA+TGG | + | chr2_2:3371768-3371787 | Msa0231170:CDS | 25.0% |
| ! | AAAAACACTGCTATTCAAAA+GGG | - | chr2_2:3371832-3371851 | None:intergenic | 25.0% |
| ! | AAAAAACACTGCTATTCAAA+AGG | - | chr2_2:3371833-3371852 | None:intergenic | 25.0% |
| ! | ACTATAGTATAAATCCAAAG+CGG | - | chr2_2:3371933-3371952 | None:intergenic | 25.0% |
| ! | CACATGTTCTATTATGAAAA+AGG | - | chr2_2:3371987-3372006 | None:intergenic | 25.0% |
| ! | AATTGAGTTTCTAAATTTGC+AGG | + | chr2_2:3372047-3372066 | Msa0231170:intron | 25.0% |
| ! | TAAAAGCTTGTGATGTTAAT+AGG | + | chr2_2:3372203-3372222 | Msa0231170:intron | 25.0% |
| ! | ATGATCCATAACAATATATC+TGG | - | chr2_2:3372341-3372360 | None:intergenic | 25.0% |
| !! | GTGATATTTCAGGTAAAATA+TGG | + | chr2_2:3372368-3372387 | Msa0231170:intron | 25.0% |
| ! | AAAAAGGAAAATAACTGTGA+AGG | - | chr2_2:3372427-3372446 | None:intergenic | 25.0% |
| ! | TAGAGAAAATAAGGACAAAA+AGG | - | chr2_2:3372443-3372462 | None:intergenic | 25.0% |
| ! | CATGAACAATAGAGAAAATA+AGG | - | chr2_2:3372452-3372471 | None:intergenic | 25.0% |
| !!! | TTGAAAAGTATTGTGGAATA+TGG | - | chr2_2:3372761-3372780 | None:intergenic | 25.0% |
| !!! | TATGCAATTGAAAAGTATTG+TGG | - | chr2_2:3372768-3372787 | None:intergenic | 25.0% |
| ! | AATTATAATGGAACATGCTG+TGG | + | chr2_2:3368796-3368815 | Msa0231170:exon | 30.0% |
| TTCTCTATACTGTGAATGTT+TGG | + | chr2_2:3368953-3368972 | Msa0231170:intron | 30.0% | |
| AAAGTGAGAGACAGTTTATT+TGG | - | chr2_2:3369041-3369060 | None:intergenic | 30.0% | |
| CTCTCACTTTAGTATAAACT+TGG | + | chr2_2:3369051-3369070 | Msa0231170:intron | 30.0% | |
| CACTTTAGTATAAACTTGGA+AGG | + | chr2_2:3369055-3369074 | Msa0231170:intron | 30.0% | |
| AGGGATGTATAATTGTTCAA+AGG | - | chr2_2:3369083-3369102 | None:intergenic | 30.0% | |
| ! | TAGGAACATGTCATTACTTT+TGG | - | chr2_2:3369256-3369275 | None:intergenic | 30.0% |
| AAATAAAAGAATCAGGATGC+TGG | - | chr2_2:3369347-3369366 | None:intergenic | 30.0% | |
| !! | ATTTTAGCCTCTAGATTTGT+TGG | + | chr2_2:3369381-3369400 | Msa0231170:intron | 30.0% |
| GTAGTTTCTTAAATCTCATG+AGG | + | chr2_2:3369486-3369505 | Msa0231170:intron | 30.0% | |
| ! | TCTCTGGAGAAAATTAAAGA+AGG | + | chr2_2:3369579-3369598 | Msa0231170:CDS | 30.0% |
| AGCTCAAAAACACAGAATTA+AGG | + | chr2_2:3369629-3369648 | Msa0231170:intron | 30.0% | |
| GATTATTGAATGTTCACACT+GGG | - | chr2_2:3369863-3369882 | None:intergenic | 30.0% | |
| TGATTATTGAATGTTCACAC+TGG | - | chr2_2:3369864-3369883 | None:intergenic | 30.0% | |
| TCTGATGGAAAACTGAAATA+AGG | - | chr2_2:3369895-3369914 | None:intergenic | 30.0% | |
| AGATGAAACTACTATTCCAA+AGG | + | chr2_2:3370150-3370169 | Msa0231170:CDS | 30.0% | |
| GATGAAACTACTATTCCAAA+GGG | + | chr2_2:3370151-3370170 | Msa0231170:CDS | 30.0% | |
| !! | ATTAAATGCTGTTTCTTTGC+AGG | + | chr2_2:3370268-3370287 | Msa0231170:intron | 30.0% |
| !! | TTAAATGCTGTTTCTTTGCA+GGG | + | chr2_2:3370269-3370288 | Msa0231170:intron | 30.0% |
| GAACCATTTGTTTCATATGA+AGG | + | chr2_2:3370296-3370315 | Msa0231170:CDS | 30.0% | |
| AGACCTTCATATGAAACAAA+TGG | - | chr2_2:3370302-3370321 | None:intergenic | 30.0% | |
| ! | TTATATTTTCTACCCAATGG+AGG | + | chr2_2:3370523-3370542 | Msa0231170:intron | 30.0% |
| GAAGTAGCTTAATTAAGCAA+TGG | + | chr2_2:3370583-3370602 | Msa0231170:intron | 30.0% | |
| ATAAGTATGATGTGACATTG+TGG | + | chr2_2:3370713-3370732 | Msa0231170:intron | 30.0% | |
| GCTAGTAAATACTCAAGTAA+AGG | - | chr2_2:3370836-3370855 | None:intergenic | 30.0% | |
| TGTGTTTGTAGATCTATAGT+TGG | + | chr2_2:3370916-3370935 | Msa0231170:intron | 30.0% | |
| ACAAAATTCTAACAGTACCA+AGG | - | chr2_2:3371038-3371057 | None:intergenic | 30.0% | |
| GAATCCTATACTAATATGGA+TGG | + | chr2_2:3371305-3371324 | Msa0231170:CDS | 30.0% | |
| TGCTTGCAAAACAATAAGTA+AGG | - | chr2_2:3371363-3371382 | None:intergenic | 30.0% | |
| AGGAAGAAGAAATCAAAAGA+CGG | - | chr2_2:3371657-3371676 | None:intergenic | 30.0% | |
| !!! | TCCCTACTTTTTAAATTCTC+AGG | + | chr2_2:3371714-3371733 | Msa0231170:intron | 30.0% |
| ATGAAAAAGGAAAGTTACCA+TGG | - | chr2_2:3371974-3371993 | None:intergenic | 30.0% | |
| CATACAGTTTGTGATATTTC+AGG | + | chr2_2:3372358-3372377 | Msa0231170:CDS | 30.0% | |
| GCAAGTAATGAAACAAATGT+AGG | - | chr2_2:3372547-3372566 | None:intergenic | 30.0% | |
| TACTTGCATTAATCTGCTTA+AGG | + | chr2_2:3372560-3372579 | Msa0231170:intron | 30.0% | |
| ACCATTACATGATCATCATT+CGG | + | chr2_2:3372660-3372679 | Msa0231170:CDS | 30.0% | |
| TGTGAAACTATTACATTCAG+GGG | - | chr2_2:3372866-3372885 | None:intergenic | 30.0% | |
| CTGTGAAACTATTACATTCA+GGG | - | chr2_2:3372867-3372886 | None:intergenic | 30.0% | |
| ATTCAAAGACTCTAAGTCTA+AGG | - | chr2_2:3373235-3373254 | None:intergenic | 30.0% | |
| GATTGTTAGAAAAATTCAGC+TGG | - | chr2_2:3373281-3373300 | None:intergenic | 30.0% | |
| TACTCTATAGAATTCCTTCT+TGG | - | chr2_2:3373457-3373476 | None:intergenic | 30.0% | |
| ! | GATACTTCTCTTTTCCTTTC+TGG | + | chr2_2:3368676-3368695 | Msa0231170:five_prime_UTR | 35.0% |
| !! | ACTTTTGACTCAAAGCAGAT+GGG | - | chr2_2:3368704-3368723 | None:intergenic | 35.0% |
| !!! | TTCTATCTACCGTTTTGGAA+AGG | + | chr2_2:3368907-3368926 | Msa0231170:CDS | 35.0% |
| CTATACTGTGAATGTTTGGT+TGG | + | chr2_2:3368957-3368976 | Msa0231170:intron | 35.0% | |
| AGCAGATACATAGAGAACAT+AGG | - | chr2_2:3369275-3369294 | None:intergenic | 35.0% | |
| TATGTTCTCTATGTATCTGC+TGG | + | chr2_2:3369274-3369293 | Msa0231170:intron | 35.0% | |
| !! | TTCTGTGTTTTTGAGCTAGT+TGG | - | chr2_2:3369626-3369645 | None:intergenic | 35.0% |
| AACACAGAATTAAGGACACT+AGG | + | chr2_2:3369637-3369656 | Msa0231170:intron | 35.0% | |
| ACACAGAATTAAGGACACTA+GGG | + | chr2_2:3369638-3369657 | Msa0231170:intron | 35.0% | |
| ! | AAGTTAGCAGTGTCTAAGAT+TGG | + | chr2_2:3369756-3369775 | Msa0231170:intron | 35.0% |
| ! | CAGTTTTCCATCAGAATCTT+TGG | + | chr2_2:3369900-3369919 | Msa0231170:intron | 35.0% |
| AAAGTTGCCAAAGATTCTGA+TGG | - | chr2_2:3369910-3369929 | None:intergenic | 35.0% | |
| GCATCAACTCTATATCAACA+AGG | - | chr2_2:3369973-3369992 | None:intergenic | 35.0% | |
| !! | ATATAGAGTTGATGCTGCTT+GGG | + | chr2_2:3369978-3369997 | Msa0231170:intron | 35.0% |
| ATCATGACATGCTCAATCAT+GGG | - | chr2_2:3370109-3370128 | None:intergenic | 35.0% | |
| AATCATGACATGCTCAATCA+TGG | - | chr2_2:3370110-3370129 | None:intergenic | 35.0% | |
| !!! | CACCGGTTTTTATTTGTTCT+CGG | + | chr2_2:3370332-3370351 | Msa0231170:CDS | 35.0% |
| !! | ACCGGTTTTTATTTGTTCTC+GGG | + | chr2_2:3370333-3370352 | Msa0231170:CDS | 35.0% |
| TCCCGAGAACAAATAAAAAC+CGG | - | chr2_2:3370337-3370356 | None:intergenic | 35.0% | |
| CATGAACATTGACCAATCTT+AGG | - | chr2_2:3370443-3370462 | None:intergenic | 35.0% | |
| ! | AGTACTTAGAGCATCTCTAA+TGG | - | chr2_2:3370791-3370810 | None:intergenic | 35.0% |
| CTGCTTACTTAACATAGGAA+AGG | - | chr2_2:3370875-3370894 | None:intergenic | 35.0% | |
| TTCCTATGTTAAGTAAGCAG+TGG | + | chr2_2:3370875-3370894 | Msa0231170:intron | 35.0% | |
| AACCACTGCTTACTTAACAT+AGG | - | chr2_2:3370880-3370899 | None:intergenic | 35.0% | |
| CTTATCGATGGAAATTTGCA+AGG | + | chr2_2:3370969-3370988 | Msa0231170:CDS | 35.0% | |
| AATTCTAACAGTACCAAGGT+TGG | - | chr2_2:3371034-3371053 | None:intergenic | 35.0% | |
| ! | AGAATTTTGTCAATGCCTGA+AGG | + | chr2_2:3371048-3371067 | Msa0231170:intron | 35.0% |
| ! | GAATTTTGTCAATGCCTGAA+GGG | + | chr2_2:3371049-3371068 | Msa0231170:intron | 35.0% |
| GTAAGAACAACAAAGTGATG+AGG | + | chr2_2:3371235-3371254 | Msa0231170:CDS | 35.0% | |
| GCAGGAATCCTATACTAATA+TGG | + | chr2_2:3371301-3371320 | Msa0231170:CDS | 35.0% | |
| ! | TATGTTTTCTGCGTCAGTTT+AGG | + | chr2_2:3371545-3371564 | Msa0231170:CDS | 35.0% |
| TTACAGTGATGAAACCAAGA+CGG | - | chr2_2:3371603-3371622 | None:intergenic | 35.0% | |
| ! | ATATATGGTTAGAAGCATGG+AGG | + | chr2_2:3371771-3371790 | Msa0231170:CDS | 35.0% |
| ! | TTCATGGCATTCTAGGAATA+AGG | + | chr2_2:3371800-3371819 | Msa0231170:CDS | 35.0% |
| CAGGTCTGAATATATACTTC+TGG | + | chr2_2:3372066-3372085 | Msa0231170:intron | 35.0% | |
| ACATACAATTGCAGGGATAA+AGG | - | chr2_2:3372096-3372115 | None:intergenic | 35.0% | |
| TTTACTTGTGTTCTTGCACT+TGG | - | chr2_2:3372287-3372306 | None:intergenic | 35.0% | |
| TATGAATGAGGCCATTTCAA+AGG | - | chr2_2:3372482-3372501 | None:intergenic | 35.0% | |
| TTGAAATGGCCTCATTCATA+TGG | + | chr2_2:3372482-3372501 | Msa0231170:CDS | 35.0% | |
| TACCAATGTCCATATGAATG+AGG | - | chr2_2:3372494-3372513 | None:intergenic | 35.0% | |
| TCTTGTATGTCTATGTCTAG+TGG | + | chr2_2:3372606-3372625 | Msa0231170:intron | 35.0% | |
| CTTGTATGTCTATGTCTAGT+GGG | + | chr2_2:3372607-3372626 | Msa0231170:intron | 35.0% | |
| TTGTATGTCTATGTCTAGTG+GGG | + | chr2_2:3372608-3372627 | Msa0231170:intron | 35.0% | |
| ACCGAATGATGATCATGTAA+TGG | - | chr2_2:3372664-3372683 | None:intergenic | 35.0% | |
| CCTGTGAAACTATTACATTC+AGG | - | chr2_2:3372868-3372887 | None:intergenic | 35.0% | |
| CCTGAATGTAATAGTTTCAC+AGG | + | chr2_2:3372865-3372884 | Msa0231170:CDS | 35.0% | |
| ATTCACTCGTTTACTACAGA+TGG | + | chr2_2:3373026-3373045 | Msa0231170:intron | 35.0% | |
| TTCACTCGTTTACTACAGAT+GGG | + | chr2_2:3373027-3373046 | Msa0231170:intron | 35.0% | |
| TTAGAGATTCCTTACACAGT+TGG | + | chr2_2:3373085-3373104 | Msa0231170:CDS | 35.0% | |
| TAGTGCGAATTGATATGTAC+GGG | - | chr2_2:3373330-3373349 | None:intergenic | 35.0% | |
| GTAGTGCGAATTGATATGTA+CGG | - | chr2_2:3373331-3373350 | None:intergenic | 35.0% | |
| ! | GTTTAGTTGAAAGGTGCATG+TGG | - | chr2_2:3368616-3368635 | None:intergenic | 40.0% |
| !! | CACTTTTGACTCAAAGCAGA+TGG | - | chr2_2:3368705-3368724 | None:intergenic | 40.0% |
| ACCTACATATTCAGTTGCCT+CGG | + | chr2_2:3368844-3368863 | Msa0231170:CDS | 40.0% | |
| ! | ATGTTTGGTTGGTATCACGA+TGG | + | chr2_2:3368968-3368987 | Msa0231170:intron | 40.0% |
| !! | CGATGGATTGGATAAAATCG+CGG | + | chr2_2:3368985-3369004 | Msa0231170:intron | 40.0% |
| ! | TGACTAGCCAACAAATCTAG+AGG | - | chr2_2:3369391-3369410 | None:intergenic | 40.0% |
| AGTGGTTGAAGAAGACAAGA+AGG | + | chr2_2:3369541-3369560 | Msa0231170:intron | 40.0% | |
| GTTGAAGAAGACAAGAAGGA+AGG | + | chr2_2:3369545-3369564 | Msa0231170:CDS | 40.0% | |
| !! | GTGTTTTTGAGCTAGTTGGT+AGG | - | chr2_2:3369622-3369641 | None:intergenic | 40.0% |
| TAAGGACACTAGGGTGATTA+TGG | + | chr2_2:3369647-3369666 | Msa0231170:intron | 40.0% | |
| CTCAAGCACATAAAGCATAG+TGG | - | chr2_2:3369675-3369694 | None:intergenic | 40.0% | |
| TGAGTGAAGATTAGAGAGTG+AGG | + | chr2_2:3369717-3369736 | Msa0231170:intron | 40.0% | |
| !!! | GACACTGCTAACTTTTTCAG+TGG | - | chr2_2:3369750-3369769 | None:intergenic | 40.0% |
| !! | GATATAGAGTTGATGCTGCT+TGG | + | chr2_2:3369977-3369996 | Msa0231170:intron | 40.0% |
| ATTCCAAAGGGACTGTATAG+TGG | + | chr2_2:3370163-3370182 | Msa0231170:CDS | 40.0% | |
| ATGTTACCTCTCCACATTGA+TGG | - | chr2_2:3370195-3370214 | None:intergenic | 40.0% | |
| !! | TGTTGGTTTAGCAATGAGCA+AGG | + | chr2_2:3370385-3370404 | Msa0231170:CDS | 40.0% |
| !!! | GCAGTGGTTTAGTTTTTCTG+TGG | + | chr2_2:3370891-3370910 | Msa0231170:intron | 40.0% |
| ! | AGATCTATAGTTGGTGCAGA+TGG | + | chr2_2:3370925-3370944 | Msa0231170:intron | 40.0% |
| ! | GATCTATAGTTGGTGCAGAT+GGG | + | chr2_2:3370926-3370945 | Msa0231170:intron | 40.0% |
| ! | TTCATTGATGACACCAACCT+TGG | + | chr2_2:3371018-3371037 | Msa0231170:intron | 40.0% |
| ! | CAGTGGAAATTTTTCCCTTC+AGG | - | chr2_2:3371066-3371085 | None:intergenic | 40.0% |
| ACTAAGTTTGATCGGCTACA+TGG | - | chr2_2:3371143-3371162 | None:intergenic | 40.0% | |
| ATGTAGCCGATCAAACTTAG+TGG | + | chr2_2:3371142-3371161 | Msa0231170:intron | 40.0% | |
| TGTAGCCGATCAAACTTAGT+GGG | + | chr2_2:3371143-3371162 | Msa0231170:intron | 40.0% | |
| CCTATCCCACTAAGTTTGAT+CGG | - | chr2_2:3371151-3371170 | None:intergenic | 40.0% | |
| CGATCAAACTTAGTGGGATA+GGG | + | chr2_2:3371149-3371168 | Msa0231170:intron | 40.0% | |
| AGAACAACAAAGTGATGAGG+CGG | + | chr2_2:3371238-3371257 | Msa0231170:CDS | 40.0% | |
| GAAAACATAGCTGCAATGCA+AGG | - | chr2_2:3371534-3371553 | None:intergenic | 40.0% | |
| GACGAATTTCATGGCATTCT+AGG | + | chr2_2:3371793-3371812 | Msa0231170:CDS | 40.0% | |
| TGCATCTTTGTGAACATCCA+TGG | + | chr2_2:3371954-3371973 | Msa0231170:CDS | 40.0% | |
| CCAGATTTCAAGCGCTAAAA+TGG | - | chr2_2:3372252-3372271 | None:intergenic | 40.0% | |
| !! | CCATTTTAGCGCTTGAAATC+TGG | + | chr2_2:3372249-3372268 | Msa0231170:intron | 40.0% |
| ! | CATGCAGAATGCCTTTGAAA+TGG | + | chr2_2:3372468-3372487 | Msa0231170:intron | 40.0% |
| ATCATCATTCGGTTGACATC+TGG | + | chr2_2:3372671-3372690 | Msa0231170:CDS | 40.0% | |
| TCATCATTCGGTTGACATCT+GGG | + | chr2_2:3372672-3372691 | Msa0231170:CDS | 40.0% | |
| TCTCTTACACCAACTGTGTA+AGG | - | chr2_2:3373097-3373116 | None:intergenic | 40.0% | |
| !! | CTCATCGATCGTTGATTCTA+GGG | - | chr2_2:3373166-3373185 | None:intergenic | 40.0% |
| !! | TCTCATCGATCGTTGATTCT+AGG | - | chr2_2:3373167-3373186 | None:intergenic | 40.0% |
| TAGAATCAACGATCGATGAG+AGG | + | chr2_2:3373166-3373185 | Msa0231170:CDS | 40.0% | |
| AGAATCAACGATCGATGAGA+GGG | + | chr2_2:3373167-3373186 | Msa0231170:CDS | 40.0% | |
| CGAATTGATATGTACGGGTT+CGG | - | chr2_2:3373325-3373344 | None:intergenic | 40.0% | |
| CAACAATGTTGTCAACGTAG+AGG | + | chr2_2:3373350-3373369 | Msa0231170:CDS | 40.0% | |
| AGTTCTACTGCATACCAAGA+AGG | + | chr2_2:3373440-3373459 | Msa0231170:three_prime_UTR | 40.0% | |
| AAAGCAGATGGGATCCAGAA+AGG | - | chr2_2:3368693-3368712 | None:intergenic | 45.0% | |
| ACCGAGGCAACTGAATATGT+AGG | - | chr2_2:3368848-3368867 | None:intergenic | 45.0% | |
| CATGGTCTTTGTCTGCTTCT+TGG | + | chr2_2:3368877-3368896 | Msa0231170:CDS | 45.0% | |
| ! | GAGCGTTCTATCTACCGTTT+TGG | + | chr2_2:3368902-3368921 | Msa0231170:CDS | 45.0% |
| ! | TGGTTGGTATCACGATGGAT+TGG | + | chr2_2:3368973-3368992 | Msa0231170:intron | 45.0% |
| ! | TGGATTGGATAAAATCGCGG+TGG | + | chr2_2:3368988-3369007 | Msa0231170:intron | 45.0% |
| ! | TGCTACTTGGCATGAGAGAA+TGG | + | chr2_2:3369130-3369149 | Msa0231170:intron | 45.0% |
| TTTCTTGGCTATGCATGCAG+TGG | + | chr2_2:3369523-3369542 | Msa0231170:intron | 45.0% | |
| !!! | GAAGGCACTTTTTGCTTCTC+TGG | + | chr2_2:3369563-3369582 | Msa0231170:CDS | 45.0% |
| TGTTAGCACAAAGCGCAAGA+TGG | + | chr2_2:3370014-3370033 | Msa0231170:CDS | 45.0% | |
| TGACATGCTCAATCATGGGA+AGG | - | chr2_2:3370105-3370124 | None:intergenic | 45.0% | |
| CTGTATAGTTGTCTCGCTGT+TGG | + | chr2_2:3370368-3370387 | Msa0231170:CDS | 45.0% | |
| ACACCTCAAGTTCCTCCATT+GGG | - | chr2_2:3370538-3370557 | None:intergenic | 45.0% | |
| TTGGTGCAGATGGGAAAATC+AGG | + | chr2_2:3370935-3370954 | Msa0231170:CDS | 45.0% | |
| CAGATGGGAAAATCAGGCTA+CGG | + | chr2_2:3370941-3370960 | Msa0231170:CDS | 45.0% | |
| CCGATCAAACTTAGTGGGAT+AGG | + | chr2_2:3371148-3371167 | Msa0231170:intron | 45.0% | |
| AAACTTAGTGGGATAGGGCT+TGG | + | chr2_2:3371154-3371173 | Msa0231170:intron | 45.0% | |
| ! | AGACGCGTGATGGAAAACAA+AGG | - | chr2_2:3371271-3371290 | None:intergenic | 45.0% |
| AGTATAGGATTCCTGCTCCA+CGG | - | chr2_2:3371297-3371316 | None:intergenic | 45.0% | |
| AGCATGGAGGACGAATTTCA+TGG | + | chr2_2:3371784-3371803 | Msa0231170:CDS | 45.0% | |
| AACCAAAAAAGACCATCGCG+CGG | - | chr2_2:3372311-3372330 | None:intergenic | 45.0% | |
| GGCCTCATTCATATGGACAT+TGG | + | chr2_2:3372489-3372508 | Msa0231170:CDS | 45.0% | |
| GAACAAGAACACTGCAATGC+AGG | - | chr2_2:3372817-3372836 | None:intergenic | 45.0% | |
| GCAGTGTTCTTGTTCAGTTC+TGG | + | chr2_2:3372822-3372841 | Msa0231170:intron | 45.0% | |
| GACGAGATAACAGTGGTATC+CGG | + | chr2_2:3373189-3373208 | Msa0231170:CDS | 45.0% | |
| CAATGTTGTCAACGTAGAGG+AGG | + | chr2_2:3373353-3373372 | Msa0231170:CDS | 45.0% | |
| !! | TTTATTATATATAATTAACT+TGG | + | chr2_2:3369941-3369960 | Msa0231170:intron | 5.0% |
| ! | TGAAAGGTGCATGTGGAGAG+AGG | - | chr2_2:3368609-3368628 | None:intergenic | 50.0% |
| ATGGAACATGCTGTGGAGCA+AGG | + | chr2_2:3368803-3368822 | Msa0231170:CDS | 50.0% | |
| TGCCTCGGTTGTTACTGTCA+TGG | + | chr2_2:3368859-3368878 | Msa0231170:CDS | 50.0% | |
| GACCATGACAGTAACAACCG+AGG | - | chr2_2:3368864-3368883 | None:intergenic | 50.0% | |
| TGGATAAAATCGCGGTGGCA+CGG | + | chr2_2:3368993-3369012 | Msa0231170:intron | 50.0% | |
| GCACCACTATACAGTCCCTT+TGG | - | chr2_2:3370169-3370188 | None:intergenic | 50.0% | |
| AGTGGTGCACTCCATCAATG+TGG | + | chr2_2:3370181-3370200 | Msa0231170:CDS | 50.0% | |
| TGCACTCCATCAATGTGGAG+AGG | + | chr2_2:3370186-3370205 | Msa0231170:CDS | 50.0% | |
| CTACCCAATGGAGGAACTTG+AGG | + | chr2_2:3370532-3370551 | Msa0231170:intron | 50.0% | |
| GACACCTCAAGTTCCTCCAT+TGG | - | chr2_2:3370539-3370558 | None:intergenic | 50.0% | |
| ATGGGAAAATCAGGCTACGG+TGG | + | chr2_2:3370944-3370963 | Msa0231170:CDS | 50.0% | |
| ACCTCCTTGAACTTTGCAGC+TGG | + | chr2_2:3371907-3371926 | Msa0231170:intron | 50.0% | |
| CTTGAAATCTGGCAGCAGCA+GGG | + | chr2_2:3372260-3372279 | Msa0231170:CDS | 50.0% | |
| GATGGGATCGCGATGTAAGA+AGG | + | chr2_2:3373044-3373063 | Msa0231170:intron | 50.0% | |
| TGAGAGGGACGAGATAACAG+TGG | + | chr2_2:3373182-3373201 | Msa0231170:CDS | 50.0% | |
| ! | AGTTGTTCGAGTTAGCGTGC+CGG | - | chr2_2:3373211-3373230 | None:intergenic | 50.0% |
| ATGTACGGGTTCGGACAGAT+CGG | - | chr2_2:3373316-3373335 | None:intergenic | 50.0% | |
| ATAAAATCGCGGTGGCACGG+TGG | + | chr2_2:3368996-3369015 | Msa0231170:intron | 55.0% | |
| !! | GGGAAGGTCTTGTTCAGCAC+AGG | - | chr2_2:3370089-3370108 | None:intergenic | 55.0% |
| AAGGTCTTGAGCAGCTGCAC+CGG | + | chr2_2:3370315-3370334 | Msa0231170:CDS | 55.0% | |
| GCTACGGTGGCTCTTATCGA+TGG | + | chr2_2:3370957-3370976 | Msa0231170:CDS | 55.0% | |
| GATTACCTCGCACTCCGTCT+TGG | + | chr2_2:3371586-3371605 | Msa0231170:CDS | 55.0% | |
| TGAAACCAAGACGGAGTGCG+AGG | - | chr2_2:3371594-3371613 | None:intergenic | 55.0% | |
| GCCAGCTGCAAAGTTCAAGG+AGG | - | chr2_2:3371911-3371930 | None:intergenic | 55.0% | |
| AACTTTGCAGCTGGCCGCTT+TGG | + | chr2_2:3371916-3371935 | Msa0231170:intron | 55.0% | |
| GCTTGAAATCTGGCAGCAGC+AGG | + | chr2_2:3372259-3372278 | Msa0231170:CDS | 55.0% | |
| ACACAAGTAAAGCCGCGCGA+TGG | + | chr2_2:3372296-3372315 | Msa0231170:CDS | 55.0% | |
| !!! | AGCCGCGCGATGGTCTTTTT+TGG | + | chr2_2:3372306-3372325 | Msa0231170:CDS | 55.0% |
| TCCATCACGCGTCTCATCCG+TGG | + | chr2_2:3371277-3371296 | Msa0231170:CDS | 60.0% | |
| TCCACGGATGAGACGCGTGA+TGG | - | chr2_2:3371281-3371300 | None:intergenic | 60.0% | |
| GCGGCCAGCTGCAAAGTTCA+AGG | - | chr2_2:3371914-3371933 | None:intergenic | 60.0% | |
| ACGCGTCTCATCCGTGGAGC+AGG | + | chr2_2:3371283-3371302 | Msa0231170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3368563 | 3373522 | 3368563 | ID=Msa0231170;Name=Msa0231170 |
| chr2_2 | mRNA | 3368563 | 3373522 | 3368563 | ID=Msa0231170-mRNA-1;Parent=Msa0231170;Name=Msa0231170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=240|0.92|0.92|1|1|1|14|106|516 |
| chr2_2 | exon | 3368563 | 3368928 | 3368563 | ID=Msa0231170-mRNA-1:exon:1252;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3369543 | 3369600 | 3369543 | ID=Msa0231170-mRNA-1:exon:1253;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3369984 | 3370207 | 3369984 | ID=Msa0231170-mRNA-1:exon:1254;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3370290 | 3370406 | 3370290 | ID=Msa0231170-mRNA-1:exon:1255;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3370927 | 3370990 | 3370927 | ID=Msa0231170-mRNA-1:exon:1256;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3371235 | 3371326 | 3371235 | ID=Msa0231170-mRNA-1:exon:1257;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3371544 | 3371618 | 3371544 | ID=Msa0231170-mRNA-1:exon:1258;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3371736 | 3371821 | 3371736 | ID=Msa0231170-mRNA-1:exon:1259;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3371926 | 3371975 | 3371926 | ID=Msa0231170-mRNA-1:exon:1260;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3372258 | 3372379 | 3372258 | ID=Msa0231170-mRNA-1:exon:1261;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3372475 | 3372510 | 3372475 | ID=Msa0231170-mRNA-1:exon:1262;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3372626 | 3372693 | 3372626 | ID=Msa0231170-mRNA-1:exon:1263;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3372826 | 3372886 | 3372826 | ID=Msa0231170-mRNA-1:exon:1264;Parent=Msa0231170-mRNA-1 |
| chr2_2 | exon | 3373045 | 3373522 | 3373045 | ID=Msa0231170-mRNA-1:exon:1265;Parent=Msa0231170-mRNA-1 |
| chr2_2 | five_prime_UTR | 3368563 | 3368802 | 3368563 | ID=Msa0231170-mRNA-1:five_prime_utr;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3368803 | 3368928 | 3368803 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3369543 | 3369600 | 3369543 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3369984 | 3370207 | 3369984 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3370290 | 3370406 | 3370290 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3370927 | 3370990 | 3370927 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3371235 | 3371326 | 3371235 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3371544 | 3371618 | 3371544 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3371736 | 3371821 | 3371736 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3371926 | 3371975 | 3371926 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3372258 | 3372379 | 3372258 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3372475 | 3372510 | 3372475 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3372626 | 3372693 | 3372626 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3372826 | 3372886 | 3372826 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | CDS | 3373045 | 3373416 | 3373045 | ID=Msa0231170-mRNA-1:cds;Parent=Msa0231170-mRNA-1 |
| chr2_2 | three_prime_UTR | 3373417 | 3373522 | 3373417 | ID=Msa0231170-mRNA-1:three_prime_utr;Parent=Msa0231170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
