Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881340 | XP_003592974.2 | 92.740 | 551 | 5 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1042 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881340 | sp|O23693|MLO4_ARATH | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881340 | G7INP7 | 92.740 | 551 | 5 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1042 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231170 | Msa0881340 | 0.964913 | 6.265852e-124 | -8.615850e-47 |
| Msa0323250 | Msa0881340 | 0.989151 | 6.625574e-177 | -8.615850e-47 |
| Msa0323340 | Msa0881340 | 0.804976 | 1.667637e-49 | -8.615850e-47 |
| Msa0881340 | Msa0966120 | 0.802339 | 5.878465e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881340 | MtrunA17_Chr2g0277471 | 92.740 | 551 | 5 | 2 | 1 | 516 | 1 | 551 | 0.0 | 1042 |
| Msa0881340 | MtrunA17_Chr2g0317801 | 44.397 | 464 | 214 | 4 | 1 | 428 | 1 | 456 | 2.53e-128 | 385 |
| Msa0881340 | MtrunA17_Chr5g0405641 | 47.804 | 387 | 164 | 9 | 1 | 350 | 2 | 387 | 3.35e-102 | 312 |
| Msa0881340 | MtrunA17_Chr2g0326301 | 35.368 | 475 | 258 | 10 | 8 | 436 | 7 | 478 | 2.32e-83 | 270 |
| Msa0881340 | MtrunA17_Chr3g0144171 | 33.835 | 532 | 288 | 15 | 1 | 487 | 1 | 513 | 1.48e-82 | 266 |
| Msa0881340 | MtrunA17_Chr6g0462051 | 34.656 | 479 | 254 | 13 | 9 | 437 | 9 | 478 | 1.59e-81 | 264 |
| Msa0881340 | MtrunA17_Chr3g0145831 | 34.879 | 453 | 239 | 8 | 10 | 414 | 13 | 457 | 1.86e-76 | 249 |
| Msa0881340 | MtrunA17_Chr5g0407381 | 31.676 | 543 | 298 | 16 | 9 | 507 | 28 | 541 | 2.26e-75 | 248 |
| Msa0881340 | MtrunA17_Chr8g0370181 | 32.135 | 473 | 268 | 8 | 9 | 438 | 38 | 500 | 5.49e-73 | 242 |
| Msa0881340 | MtrunA17_Chr8g0337941 | 31.656 | 477 | 267 | 7 | 9 | 431 | 12 | 483 | 7.68e-73 | 240 |
| Msa0881340 | MtrunA17_Chr2g0291441 | 34.423 | 459 | 246 | 10 | 6 | 425 | 5 | 447 | 4.37e-71 | 234 |
| Msa0881340 | MtrunA17_Chr8g0337931 | 31.924 | 473 | 254 | 10 | 15 | 430 | 8 | 469 | 2.87e-67 | 225 |
| Msa0881340 | MtrunA17_Chr4g0040611 | 28.210 | 514 | 314 | 10 | 4 | 481 | 2 | 496 | 7.47e-61 | 209 |
| Msa0881340 | MtrunA17_Chr3g0144201 | 32.492 | 317 | 183 | 6 | 9 | 299 | 11 | 322 | 1.37e-47 | 173 |
| Msa0881340 | MtrunA17_Chr3g0144201 | 33.714 | 175 | 106 | 4 | 313 | 485 | 398 | 564 | 7.22e-18 | 86.7 |
| Msa0881340 | MtrunA17_Chr5g0405651 | 50.000 | 80 | 37 | 1 | 360 | 436 | 1 | 80 | 3.53e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881340 | AT1G11000.1 | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 660 |
| Msa0881340 | AT1G11000.3 | 63.519 | 540 | 149 | 8 | 1 | 501 | 1 | 531 | 0.0 | 660 |
| Msa0881340 | AT1G11000.2 | 65.842 | 404 | 105 | 3 | 1 | 373 | 1 | 402 | 0.0 | 521 |
| Msa0881340 | AT5G53760.2 | 43.633 | 479 | 219 | 6 | 9 | 442 | 16 | 488 | 1.23e-134 | 402 |
| Msa0881340 | AT5G53760.1 | 43.633 | 479 | 219 | 6 | 9 | 442 | 16 | 488 | 1.23e-134 | 402 |
| Msa0881340 | AT1G26700.1 | 43.326 | 487 | 227 | 6 | 9 | 450 | 10 | 492 | 8.98e-134 | 399 |
| Msa0881340 | AT1G26700.2 | 43.326 | 487 | 227 | 6 | 9 | 450 | 10 | 492 | 8.98e-134 | 399 |
| Msa0881340 | AT2G33670.1 | 31.969 | 513 | 290 | 9 | 9 | 488 | 15 | 501 | 1.01e-84 | 271 |
| Msa0881340 | AT4G02600.2 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 4.58e-83 | 267 |
| Msa0881340 | AT4G02600.1 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 4.58e-83 | 267 |
| Msa0881340 | AT1G61560.1 | 33.122 | 474 | 268 | 10 | 9 | 436 | 8 | 478 | 9.57e-82 | 265 |
| Msa0881340 | AT4G24250.1 | 32.773 | 476 | 273 | 6 | 4 | 440 | 2 | 469 | 1.18e-81 | 262 |
| Msa0881340 | AT2G44110.2 | 33.042 | 457 | 263 | 5 | 8 | 427 | 5 | 455 | 1.68e-80 | 260 |
| Msa0881340 | AT2G44110.1 | 33.260 | 457 | 261 | 6 | 8 | 427 | 5 | 454 | 6.37e-80 | 258 |
| Msa0881340 | AT2G39200.1 | 33.693 | 463 | 260 | 10 | 9 | 428 | 6 | 464 | 3.86e-79 | 258 |
| Msa0881340 | AT1G61560.4 | 32.563 | 476 | 268 | 12 | 9 | 436 | 8 | 478 | 6.23e-77 | 253 |
| Msa0881340 | AT1G42560.1 | 33.333 | 459 | 249 | 9 | 9 | 423 | 14 | 459 | 1.06e-76 | 249 |
| Msa0881340 | AT1G11310.1 | 32.285 | 477 | 271 | 9 | 9 | 436 | 8 | 481 | 2.78e-76 | 251 |
| Msa0881340 | AT1G61560.10 | 32.949 | 434 | 242 | 10 | 9 | 396 | 8 | 438 | 2.85e-73 | 239 |
| Msa0881340 | AT2G17430.1 | 32.450 | 453 | 258 | 8 | 4 | 421 | 26 | 465 | 1.26e-72 | 240 |
| Msa0881340 | AT5G65970.1 | 33.258 | 442 | 240 | 8 | 9 | 414 | 34 | 456 | 2.33e-69 | 233 |
| Msa0881340 | AT2G17480.1 | 32.353 | 442 | 257 | 7 | 9 | 414 | 39 | 474 | 2.66e-65 | 222 |
| Msa0881340 | AT4G24250.2 | 32.274 | 409 | 231 | 5 | 4 | 373 | 2 | 403 | 3.11e-65 | 217 |
| Msa0881340 | AT3G45290.1 | 31.453 | 461 | 269 | 11 | 3 | 427 | 9 | 458 | 1.79e-64 | 218 |
| Msa0881340 | AT1G61560.7 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 3.85e-64 | 214 |
| Msa0881340 | AT1G61560.9 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 3.85e-64 | 214 |
| Msa0881340 | AT1G61560.2 | 31.981 | 419 | 236 | 10 | 64 | 436 | 1 | 416 | 6.26e-64 | 217 |
| Msa0881340 | AT1G61560.3 | 31.981 | 419 | 236 | 10 | 64 | 436 | 1 | 416 | 6.26e-64 | 217 |
| Msa0881340 | AT1G11310.2 | 31.884 | 414 | 230 | 9 | 9 | 373 | 8 | 418 | 1.58e-61 | 207 |
| Msa0881340 | AT1G61560.6 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.35e-59 | 201 |
| Msa0881340 | AT1G61560.8 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.35e-59 | 201 |
| Msa0881340 | AT1G61560.5 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 3.35e-59 | 201 |
| Msa0881340 | AT1G11310.3 | 30.332 | 422 | 242 | 9 | 64 | 436 | 1 | 419 | 3.52e-57 | 199 |
| Msa0881340 | AT1G42560.2 | 31.016 | 374 | 201 | 9 | 9 | 338 | 14 | 374 | 3.88e-49 | 174 |
| Msa0881340 | AT5G65970.2 | 34.899 | 298 | 176 | 6 | 4 | 300 | 31 | 311 | 8.77e-48 | 172 |
Find 104 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTCTTTGTCTGCTTCT+TGG | 0.198947 | 6_1:+28389486 | Msa0881340:CDS |
| CATACAGTTTGTGATATTTC+AGG | 0.214387 | 6_1:+28392971 | Msa0881340:CDS |
| TCTCATCGATCGTTGATTCT+AGG | 0.269205 | 6_1:-28393779 | None:intergenic |
| AACTTTGCAGCTGGCCGCTT+TGG | 0.282048 | 6_1:+28392529 | Msa0881340:intron |
| TACTCTATAGAATTCCTTCT+TGG | 0.285750 | 6_1:-28394069 | None:intergenic |
| TTCATGGCATTCTAGGAATA+AGG | 0.290919 | 6_1:+28392413 | Msa0881340:CDS |
| ATCATCATTCGGTTGACATC+TGG | 0.296844 | 6_1:+28393284 | Msa0881340:CDS |
| CCTGTGAAACTATTACATTC+AGG | 0.321958 | 6_1:-28393478 | None:intergenic |
| GCAGTGTTCTTGTTCAGTTC+TGG | 0.326834 | 6_1:+28393435 | Msa0881340:intron |
| GAGCGTTCTATCTACCGTTT+TGG | 0.346359 | 6_1:+28389511 | Msa0881340:CDS |
| GACGAATTTCATGGCATTCT+AGG | 0.354070 | 6_1:+28392406 | Msa0881340:CDS |
| ATTCAAAGACTCTAAGTCTA+AGG | 0.354684 | 6_1:-28393847 | None:intergenic |
| TTGAAATGGCCTCATTCATA+TGG | 0.364022 | 6_1:+28393095 | Msa0881340:CDS |
| GCAGGAATCCTATACTAATA+TGG | 0.364635 | 6_1:+28391914 | Msa0881340:CDS |
| ATGATCCATAACAATATATC+TGG | 0.379893 | 6_1:-28392951 | None:intergenic |
| TTGATAGAGTTGATGCTGCT+TGG | 0.384287 | 6_1:+28390591 | Msa0881340:intron |
| ATGTTACCTCTCCACATTGA+TGG | 0.395745 | 6_1:-28390806 | None:intergenic |
| TGATAGAGTTGATGCTGCTT+GGG | 0.407596 | 6_1:+28390592 | Msa0881340:intron |
| GAACCATTTGTTTCATATGA+AGG | 0.417481 | 6_1:+28390910 | Msa0881340:CDS |
| ATTACCATCCATATTAGTAT+AGG | 0.427214 | 6_1:-28391922 | None:intergenic |
| GCTTGAAATCTGGCAGCAGC+AGG | 0.448228 | 6_1:+28392872 | Msa0881340:CDS |
| AATCATGACATGCTCAATCA+TGG | 0.454257 | 6_1:-28390721 | None:intergenic |
| TTTACTTGTGTTCTTGCACT+TGG | 0.457809 | 6_1:-28392897 | None:intergenic |
| TCTCTTACACCAACTGTGTA+AGG | 0.457899 | 6_1:-28393709 | None:intergenic |
| GATGTAAGAAGAAATTATAA+TGG | 0.460054 | 6_1:+28389393 | Msa0881340:exon |
| TCATCATTCGGTTGACATCT+GGG | 0.460436 | 6_1:+28393285 | Msa0881340:CDS |
| CTCATCGATCGTTGATTCTA+GGG | 0.460757 | 6_1:-28393778 | None:intergenic |
| TTGGTGCAGATGGGAAAATC+AGG | 0.462485 | 6_1:+28391549 | Msa0881340:CDS |
| GCACCACTATACAGTCCCTT+TGG | 0.464450 | 6_1:-28390780 | None:intergenic |
| AGATCTATAGTTGGTGCAGA+TGG | 0.465675 | 6_1:+28391539 | Msa0881340:intron |
| CTGTATAGTTGTCTCGCTGT+TGG | 0.467163 | 6_1:+28390982 | Msa0881340:CDS |
| CTGTGAAACTATTACATTCA+GGG | 0.479207 | 6_1:-28393477 | None:intergenic |
| ACGCGTCTCATCCGTGGAGC+AGG | 0.483102 | 6_1:+28391896 | Msa0881340:CDS |
| AGACCTTCATATGAAACAAA+TGG | 0.484020 | 6_1:-28390913 | None:intergenic |
| ACCATTACATGATCATCATT+CGG | 0.484425 | 6_1:+28393273 | Msa0881340:CDS |
| CATGCAGAATGCCTTTGAAA+TGG | 0.490679 | 6_1:+28393081 | Msa0881340:intron |
| GATTACCTCGCACTCCGTCT+TGG | 0.495055 | 6_1:+28392199 | Msa0881340:CDS |
| CGAATTGATATGTACGGGTT+CGG | 0.496092 | 6_1:-28393937 | None:intergenic |
| TGTGTTTGTAGATCTATAGT+TGG | 0.500413 | 6_1:+28391530 | Msa0881340:intron |
| CCTGAATGTAATAGTTTCAC+AGG | 0.501576 | 6_1:+28393478 | Msa0881340:CDS |
| GACGAGATAACAGTGGTATC+CGG | 0.506598 | 6_1:+28393804 | Msa0881340:CDS |
| ATATGATTAGTTTAGTTGAA+AGG | 0.511926 | 6_1:-28389231 | None:intergenic |
| AGTTCTACTGCATACCAAGA+AGG | 0.524545 | 6_1:+28394055 | Msa0881340:three_prime_UTR |
| TGCCTCGGTTGTTACTGTCA+TGG | 0.525886 | 6_1:+28389468 | Msa0881340:CDS |
| GATGGGATCGCGATGTAAGA+AGG | 0.529541 | 6_1:+28393659 | Msa0881340:intron |
| TTATGAAAATCATATGATAA+CGG | 0.534435 | 6_1:-28392361 | None:intergenic |
| TAAATATATGGTTAGAAGCA+TGG | 0.536505 | 6_1:+28392381 | Msa0881340:CDS |
| TAGAATCAACGATCGATGAG+AGG | 0.539794 | 6_1:+28393781 | Msa0881340:CDS |
| ATTCCAAAGGGACTGTATAG+TGG | 0.539888 | 6_1:+28390777 | Msa0881340:CDS |
| TCCATCACGCGTCTCATCCG+TGG | 0.543333 | 6_1:+28391890 | Msa0881340:CDS |
| TTAGAGATTCCTTACACAGT+TGG | 0.545309 | 6_1:+28393700 | Msa0881340:CDS |
| AAGGTCTTGAGCAGCTGCAC+CGG | 0.549157 | 6_1:+28390929 | Msa0881340:CDS |
| ACCTACATATTCAGTTGCCT+CGG | 0.550052 | 6_1:+28389453 | Msa0881340:CDS |
| AGCATGGAGGACGAATTTCA+TGG | 0.554354 | 6_1:+28392397 | Msa0881340:CDS |
| TAGTGCGAATTGATATGTAC+GGG | 0.554406 | 6_1:-28393942 | None:intergenic |
| TATGAATGAGGCCATTTCAA+AGG | 0.559827 | 6_1:-28393092 | None:intergenic |
| TCTCTGGAGAAAATTAAAGA+AGG | 0.561099 | 6_1:+28390191 | Msa0881340:CDS |
| TGCATCTTTGTGAACATCCA+TGG | 0.561195 | 6_1:+28392567 | Msa0881340:CDS |
| GGGAAGGTCTTGTTCAGCAC+AGG | 0.563562 | 6_1:-28390700 | None:intergenic |
| AATTATAATGGAACATGCTG+TGG | 0.564038 | 6_1:+28389405 | Msa0881340:exon |
| GATCTATAGTTGGTGCAGAT+GGG | 0.565228 | 6_1:+28391540 | Msa0881340:intron |
| AGAATCAACGATCGATGAGA+GGG | 0.566055 | 6_1:+28393782 | Msa0881340:CDS |
| AAAGCAGATGGGATCCAGAA+AGG | 0.568854 | 6_1:-28389299 | None:intergenic |
| GATGAAACTACTATTCCAAA+GGG | 0.569451 | 6_1:+28390765 | Msa0881340:CDS |
| CTTATCGATGGAAATTTGCA+AGG | 0.569789 | 6_1:+28391583 | Msa0881340:CDS |
| TGTTAGCACAAAGCGCAAGA+TGG | 0.570847 | 6_1:+28390628 | Msa0881340:CDS |
| ATGTACGGGTTCGGACAGAT+CGG | 0.573862 | 6_1:-28393928 | None:intergenic |
| GAATCCTATACTAATATGGA+TGG | 0.575461 | 6_1:+28391918 | Msa0881340:CDS |
| ATGGAACATGCTGTGGAGCA+AGG | 0.578849 | 6_1:+28389412 | Msa0881340:CDS |
| GGCCTCATTCATATGGACAT+TGG | 0.579307 | 6_1:+28393102 | Msa0881340:CDS |
| TACCAATGTCCATATGAATG+AGG | 0.584051 | 6_1:-28393104 | None:intergenic |
| GCTACGATGGCTCTTATCGA+TGG | 0.590315 | 6_1:+28391571 | Msa0881340:CDS |
| TGATCAAATCAAAAGTGAGT+AGG | 0.591418 | 6_1:+28389154 | None:intergenic |
| ATCATGACATGCTCAATCAT+GGG | 0.591999 | 6_1:-28390720 | None:intergenic |
| GTTTAGTTGAAAGGTGCATG+TGG | 0.594354 | 6_1:-28389222 | None:intergenic |
| CTTGAAATCTGGCAGCAGCA+GGG | 0.595998 | 6_1:+28392873 | Msa0881340:CDS |
| ACCGAATGATGATCATGTAA+TGG | 0.596192 | 6_1:-28393274 | None:intergenic |
| GTAGTGCGAATTGATATGTA+CGG | 0.599536 | 6_1:-28393943 | None:intergenic |
| AGTGGTTGAAGAAGACAAGA+AGG | 0.601038 | 6_1:+28390153 | Msa0881340:intron |
| AGATGAAACTACTATTCCAA+AGG | 0.604783 | 6_1:+28390764 | Msa0881340:CDS |
| ATGGGAAAATCAGGCTACGA+TGG | 0.609996 | 6_1:+28391558 | Msa0881340:CDS |
| AGTATAGGATTCCTGCTCCA+CGG | 0.621498 | 6_1:-28391907 | None:intergenic |
| TGAAAGGTGCATGTGGAGAG+AGG | 0.623118 | 6_1:-28389215 | None:intergenic |
| ACACAAGTAAAGCCGCGCGA+TGG | 0.629938 | 6_1:+28392909 | Msa0881340:CDS |
| TGACATGCTCAATCATGGGA+AGG | 0.634182 | 6_1:-28390716 | None:intergenic |
| GTTGAAGAAGACAAGAAGGA+AGG | 0.636202 | 6_1:+28390157 | Msa0881340:CDS |
| TGTTGGTTTAGCAATGAGCA+AGG | 0.642368 | 6_1:+28390999 | Msa0881340:CDS |
| AGTTGTTCGAGTTAGCGTGC+CGG | 0.646338 | 6_1:-28393823 | None:intergenic |
| TCCACGGATGAGACGCGTGA+TGG | 0.651042 | 6_1:-28391891 | None:intergenic |
| TGTGAAACTATTACATTCAG+GGG | 0.651741 | 6_1:-28393476 | None:intergenic |
| AGAACAACAAAGTGATGAGG+CGG | 0.652562 | 6_1:+28391851 | Msa0881340:CDS |
| CAATGTTGTCAACGTAGAGG+AGG | 0.653582 | 6_1:+28393968 | Msa0881340:CDS |
| TGAAACCAAGACGGAGTGCG+AGG | 0.667590 | 6_1:-28392204 | None:intergenic |
| GTAAGAACAACAAAGTGATG+AGG | 0.668841 | 6_1:+28391848 | Msa0881340:CDS |
| ACCGAGGCAACTGAATATGT+AGG | 0.669841 | 6_1:-28389454 | None:intergenic |
| TGCACTCCATCAATGTGGAG+AGG | 0.673997 | 6_1:+28390800 | Msa0881340:CDS |
| CAACAATGTTGTCAACGTAG+AGG | 0.682543 | 6_1:+28393965 | Msa0881340:CDS |
| TTACAGTGATGAAACCAAGA+CGG | 0.701613 | 6_1:-28392213 | None:intergenic |
| AGTGGTGCACTCCATCAATG+TGG | 0.709568 | 6_1:+28390795 | Msa0881340:CDS |
| GACCATGACAGTAACAACCG+AGG | 0.728387 | 6_1:-28389470 | None:intergenic |
| ACTATAGTATAAATCCAAAG+CGG | 0.728488 | 6_1:-28392543 | None:intergenic |
| AGACGCGTGATGGAAAACAA+AGG | 0.729624 | 6_1:-28391881 | None:intergenic |
| TGAGAGGGACGAGATAACAG+TGG | 0.741797 | 6_1:+28393797 | Msa0881340:CDS |
| ATATATGGTTAGAAGCATGG+AGG | 0.760811 | 6_1:+28392384 | Msa0881340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATAAAAGAATC+AGG | - | chr6_1:28389966-28389985 | None:intergenic | 10.0% |
| !!! | ATATGATTTTCATAAATATA+TGG | + | chr6_1:28392369-28392388 | Msa0881340:CDS | 10.0% |
| !!! | AAAAGTGTTTTTTTAATGAA+AGG | + | chr6_1:28389327-28389346 | Msa0881340:five_prime_UTR | 15.0% |
| !!! | TTTAATTGATTTTATTCTAC+AGG | + | chr6_1:28391826-28391845 | Msa0881340:intron | 15.0% |
| !! | TATAAAATATTATATCAGTG+AGG | - | chr6_1:28392290-28392309 | None:intergenic | 15.0% |
| !! | TTATGAAAATCATATGATAA+CGG | - | chr6_1:28392364-28392383 | None:intergenic | 15.0% |
| !!! | ATATGATTAGTTTAGTTGAA+AGG | - | chr6_1:28389234-28389253 | None:intergenic | 20.0% |
| !! | GATGTAAGAAGAAATTATAA+TGG | + | chr6_1:28389393-28389412 | Msa0881340:exon | 20.0% |
| !! | CAGTTTATTTGGTATATATT+TGG | - | chr6_1:28389639-28389658 | None:intergenic | 20.0% |
| !! | AATAACAAGCAAATAGTTAA+GGG | - | chr6_1:28389711-28389730 | None:intergenic | 20.0% |
| !! | AAATAACAAGCAAATAGTTA+AGG | - | chr6_1:28389712-28389731 | None:intergenic | 20.0% |
| !!! | TTATTTGTTATTTTGCTACT+TGG | + | chr6_1:28389726-28389745 | Msa0881340:intron | 20.0% |
| !!! | TGTTGAAATTGCTTTTTATT+TGG | + | chr6_1:28389766-28389785 | Msa0881340:intron | 20.0% |
| !! | CAAATTTATTACATTCTGAT+AGG | + | chr6_1:28389906-28389925 | Msa0881340:intron | 20.0% |
| !! | GTTAGTGTTTGATATTAATT+AGG | + | chr6_1:28389928-28389947 | Msa0881340:intron | 20.0% |
| !! | ATAAAAATAAAAGAATCAGG+AGG | - | chr6_1:28389963-28389982 | None:intergenic | 20.0% |
| !! | TTTATTGTTATACCTAAGAT+TGG | + | chr6_1:28391042-28391061 | Msa0881340:intron | 20.0% |
| !! | AAAATATGTAAGTATAAGGT+TGG | - | chr6_1:28392099-28392118 | None:intergenic | 20.0% |
| !!! | ACCTTATACTTACATATTTT+AGG | + | chr6_1:28392099-28392118 | Msa0881340:intron | 20.0% |
| !!! | CCTTATACTTACATATTTTA+GGG | + | chr6_1:28392100-28392119 | Msa0881340:intron | 20.0% |
| !! | TTATTATACATACAATTGCA+GGG | - | chr6_1:28392716-28392735 | None:intergenic | 20.0% |
| !! | ATTATTATACATACAATTGC+AGG | - | chr6_1:28392717-28392736 | None:intergenic | 20.0% |
| !!! | TTCTAAGAATTTCTTCATTT+TGG | - | chr6_1:28392762-28392781 | None:intergenic | 20.0% |
| !! | AAATTCTTAGAAAATCATGT+TGG | + | chr6_1:28392770-28392789 | Msa0881340:intron | 20.0% |
| !! | AAAAACCAGATATATTGTTA+TGG | + | chr6_1:28392946-28392965 | Msa0881340:CDS | 20.0% |
| !!! | TTTTGTTTACCTTTCCAAAA+CGG | - | chr6_1:28389528-28389547 | None:intergenic | 25.0% |
| !!! | TGCTTTTTATTTGGTATCTT+AGG | + | chr6_1:28389775-28389794 | Msa0881340:intron | 25.0% |
| ! | TTCTACTGTTCAAACTTATT+AGG | - | chr6_1:28390040-28390059 | None:intergenic | 25.0% |
| ! | ATTTAACTGTGAATGTAACT+TGG | + | chr6_1:28390059-28390078 | Msa0881340:intron | 25.0% |
| !!! | GAAACTACTAGTTGTTTTAT+TGG | - | chr6_1:28390086-28390105 | None:intergenic | 25.0% |
| !!! | GACATGAAACTTATTTTTCT+TGG | + | chr6_1:28390120-28390139 | Msa0881340:intron | 25.0% |
| !!! | TTTAGATCAAGTTTTATTGC+AGG | - | chr6_1:28390406-28390425 | None:intergenic | 25.0% |
| ! | ATGCTTCAATTGTAAAATGA+AGG | + | chr6_1:28390832-28390851 | Msa0881340:intron | 25.0% |
| ! | TCTTAGGTATAACAATAAAC+TGG | - | chr6_1:28391041-28391060 | None:intergenic | 25.0% |
| !! | ATGTAAGAGCATATTCAATA+AGG | + | chr6_1:28391074-28391093 | Msa0881340:intron | 25.0% |
| !! | TGTAAGAGCATATTCAATAA+GGG | + | chr6_1:28391075-28391094 | Msa0881340:intron | 25.0% |
| !! | TTCTTATATTTTCTACCCAA+TGG | + | chr6_1:28391134-28391153 | Msa0881340:intron | 25.0% |
| ! | TTTCATACACTACTATCAAT+TGG | - | chr6_1:28391356-28391375 | None:intergenic | 25.0% |
| ! | ATTACATTAGAAACAAACAG+TGG | - | chr6_1:28391697-28391716 | None:intergenic | 25.0% |
| !! | TTTTCATCATAATCACACTA+TGG | + | chr6_1:28391720-28391739 | Msa0881340:intron | 25.0% |
| ! | ATTACCATCCATATTAGTAT+AGG | - | chr6_1:28391925-28391944 | None:intergenic | 25.0% |
| ! | AAGCAGATTTAGAAGTAAAA+AGG | - | chr6_1:28392072-28392091 | None:intergenic | 25.0% |
| ! | CCCTAAAATATGTAAGTATA+AGG | - | chr6_1:28392103-28392122 | None:intergenic | 25.0% |
| ! | TCCTGAGAATTTAAAAAGTA+GGG | - | chr6_1:28392331-28392350 | None:intergenic | 25.0% |
| ! | TTCCTGAGAATTTAAAAAGT+AGG | - | chr6_1:28392332-28392351 | None:intergenic | 25.0% |
| ! | TAAATATATGGTTAGAAGCA+TGG | + | chr6_1:28392381-28392400 | Msa0881340:CDS | 25.0% |
| ! | AAAAACACTGCTATTCAAAA+GGG | - | chr6_1:28392445-28392464 | None:intergenic | 25.0% |
| ! | AAAAAACACTGCTATTCAAA+AGG | - | chr6_1:28392446-28392465 | None:intergenic | 25.0% |
| ! | ACTATAGTATAAATCCAAAG+CGG | - | chr6_1:28392546-28392565 | None:intergenic | 25.0% |
| ! | CACATGTTCTATTATGAAAA+AGG | - | chr6_1:28392600-28392619 | None:intergenic | 25.0% |
| ! | AATTGAGTTTCTAAATTTGC+AGG | + | chr6_1:28392660-28392679 | Msa0881340:intron | 25.0% |
| ! | TAAAAGCTTGTGATGTTAAT+AGG | + | chr6_1:28392816-28392835 | Msa0881340:intron | 25.0% |
| ! | ATGATCCATAACAATATATC+TGG | - | chr6_1:28392954-28392973 | None:intergenic | 25.0% |
| !! | GTGATATTTCAGGTAAAATA+TGG | + | chr6_1:28392981-28393000 | Msa0881340:intron | 25.0% |
| ! | AAAAAGGAAAATAACTGTGA+AGG | - | chr6_1:28393040-28393059 | None:intergenic | 25.0% |
| ! | TAGAGAAAATAAGGACAAAA+AGG | - | chr6_1:28393056-28393075 | None:intergenic | 25.0% |
| ! | CATGAACAATAGAGAAAATA+AGG | - | chr6_1:28393065-28393084 | None:intergenic | 25.0% |
| !!! | TTGAAAAGTATTGTGGAATA+TGG | - | chr6_1:28393374-28393393 | None:intergenic | 25.0% |
| !!! | TATGCAATTGAAAAGTATTG+TGG | - | chr6_1:28393381-28393400 | None:intergenic | 25.0% |
| ! | AATTATAATGGAACATGCTG+TGG | + | chr6_1:28389405-28389424 | Msa0881340:exon | 30.0% |
| TTCTCTATACTGTGAATGTT+TGG | + | chr6_1:28389562-28389581 | Msa0881340:intron | 30.0% | |
| AAAGTGAGAGACAGTTTATT+TGG | - | chr6_1:28389650-28389669 | None:intergenic | 30.0% | |
| CTCTCACTTTAGTATAAACT+TGG | + | chr6_1:28389660-28389679 | Msa0881340:intron | 30.0% | |
| CACTTTAGTATAAACTTGGA+AGG | + | chr6_1:28389664-28389683 | Msa0881340:intron | 30.0% | |
| AGGGATGTATAATTGTTCAA+AGG | - | chr6_1:28389692-28389711 | None:intergenic | 30.0% | |
| ! | TAGGAACATGTCATTACTTT+TGG | - | chr6_1:28389865-28389884 | None:intergenic | 30.0% |
| !! | ATTTTAGCCTCTAGATTTGT+TGG | + | chr6_1:28389993-28390012 | Msa0881340:intron | 30.0% |
| GTAGTTTCTTAAATCTCATG+AGG | + | chr6_1:28390098-28390117 | Msa0881340:intron | 30.0% | |
| ! | TCTCTGGAGAAAATTAAAGA+AGG | + | chr6_1:28390191-28390210 | Msa0881340:CDS | 30.0% |
| AGCTCAAAAACACAGAATTA+AGG | + | chr6_1:28390241-28390260 | Msa0881340:intron | 30.0% | |
| TGATTATTGAATGTTCACAC+TGG | - | chr6_1:28390480-28390499 | None:intergenic | 30.0% | |
| TCTGATGGAAAACTGAAATA+AGG | - | chr6_1:28390511-28390530 | None:intergenic | 30.0% | |
| AGATGAAACTACTATTCCAA+AGG | + | chr6_1:28390764-28390783 | Msa0881340:CDS | 30.0% | |
| GATGAAACTACTATTCCAAA+GGG | + | chr6_1:28390765-28390784 | Msa0881340:CDS | 30.0% | |
| !! | ATTAAATGCTGTTTCTTTGC+AGG | + | chr6_1:28390882-28390901 | Msa0881340:intron | 30.0% |
| !! | TTAAATGCTGTTTCTTTGCA+GGG | + | chr6_1:28390883-28390902 | Msa0881340:intron | 30.0% |
| GAACCATTTGTTTCATATGA+AGG | + | chr6_1:28390910-28390929 | Msa0881340:CDS | 30.0% | |
| AGACCTTCATATGAAACAAA+TGG | - | chr6_1:28390916-28390935 | None:intergenic | 30.0% | |
| ! | TTATATTTTCTACCCAATGG+AGG | + | chr6_1:28391137-28391156 | Msa0881340:intron | 30.0% |
| GAAGTAGCTTAATTAAGCAA+TGG | + | chr6_1:28391197-28391216 | Msa0881340:intron | 30.0% | |
| ATAAGTATGATGTGACATTG+TGG | + | chr6_1:28391327-28391346 | Msa0881340:intron | 30.0% | |
| TGTGTTTGTAGATCTATAGT+TGG | + | chr6_1:28391530-28391549 | Msa0881340:intron | 30.0% | |
| ACAAAATTCTAACAGTACCA+AGG | - | chr6_1:28391652-28391671 | None:intergenic | 30.0% | |
| GAATCCTATACTAATATGGA+TGG | + | chr6_1:28391918-28391937 | Msa0881340:CDS | 30.0% | |
| TGCTTGCAAAACAATAAGTA+AGG | - | chr6_1:28391976-28391995 | None:intergenic | 30.0% | |
| AGGAAGAAGAAATCAAAAGA+CGG | - | chr6_1:28392270-28392289 | None:intergenic | 30.0% | |
| !!! | TCCCTACTTTTTAAATTCTC+AGG | + | chr6_1:28392327-28392346 | Msa0881340:intron | 30.0% |
| ATGAAAAAGGAAAGTTACCA+TGG | - | chr6_1:28392587-28392606 | None:intergenic | 30.0% | |
| CATACAGTTTGTGATATTTC+AGG | + | chr6_1:28392971-28392990 | Msa0881340:CDS | 30.0% | |
| GCAAGTAATGAAACAAATGT+AGG | - | chr6_1:28393160-28393179 | None:intergenic | 30.0% | |
| TACTTGCATTAATCTGCTTA+AGG | + | chr6_1:28393173-28393192 | Msa0881340:intron | 30.0% | |
| ACCATTACATGATCATCATT+CGG | + | chr6_1:28393273-28393292 | Msa0881340:CDS | 30.0% | |
| TGTGAAACTATTACATTCAG+GGG | - | chr6_1:28393479-28393498 | None:intergenic | 30.0% | |
| CTGTGAAACTATTACATTCA+GGG | - | chr6_1:28393480-28393499 | None:intergenic | 30.0% | |
| ATTCAAAGACTCTAAGTCTA+AGG | - | chr6_1:28393850-28393869 | None:intergenic | 30.0% | |
| GATTGTTAGAAAAATTCAGC+TGG | - | chr6_1:28393896-28393915 | None:intergenic | 30.0% | |
| TACTCTATAGAATTCCTTCT+TGG | - | chr6_1:28394072-28394091 | None:intergenic | 30.0% | |
| !! | ACTTTTGACTCAAAGCAGAT+GGG | - | chr6_1:28389313-28389332 | None:intergenic | 35.0% |
| !!! | TTCTATCTACCGTTTTGGAA+AGG | + | chr6_1:28389516-28389535 | Msa0881340:CDS | 35.0% |
| CTATACTGTGAATGTTTGGT+TGG | + | chr6_1:28389566-28389585 | Msa0881340:intron | 35.0% | |
| AGCAGATACATAGAGAACAT+AGG | - | chr6_1:28389884-28389903 | None:intergenic | 35.0% | |
| TATGTTCTCTATGTATCTGC+TGG | + | chr6_1:28389883-28389902 | Msa0881340:intron | 35.0% | |
| !! | TTCTGTGTTTTTGAGCTAGT+TGG | - | chr6_1:28390238-28390257 | None:intergenic | 35.0% |
| AACACAGAATTAAGGACACT+AGG | + | chr6_1:28390249-28390268 | Msa0881340:intron | 35.0% | |
| ACACAGAATTAAGGACACTA+GGG | + | chr6_1:28390250-28390269 | Msa0881340:intron | 35.0% | |
| ! | AAGTTAGCAGTGTCTAAGAT+TGG | + | chr6_1:28390368-28390387 | Msa0881340:intron | 35.0% |
| ! | CAGTTTTCCATCAGAATCTT+TGG | + | chr6_1:28390516-28390535 | Msa0881340:intron | 35.0% |
| AAAGTTGCCAAAGATTCTGA+TGG | - | chr6_1:28390526-28390545 | None:intergenic | 35.0% | |
| ATCATGACATGCTCAATCAT+GGG | - | chr6_1:28390723-28390742 | None:intergenic | 35.0% | |
| AATCATGACATGCTCAATCA+TGG | - | chr6_1:28390724-28390743 | None:intergenic | 35.0% | |
| !!! | CACCGGTTTTTATTTGTTCT+CGG | + | chr6_1:28390946-28390965 | Msa0881340:CDS | 35.0% |
| !! | ACCGGTTTTTATTTGTTCTC+GGG | + | chr6_1:28390947-28390966 | Msa0881340:CDS | 35.0% |
| TCCCGAGAACAAATAAAAAC+CGG | - | chr6_1:28390951-28390970 | None:intergenic | 35.0% | |
| CATGAACATTGACCAATCTT+AGG | - | chr6_1:28391057-28391076 | None:intergenic | 35.0% | |
| ! | AGTACTTAGAGCATCTCTAA+TGG | - | chr6_1:28391405-28391424 | None:intergenic | 35.0% |
| CTGCTTACTTAACATAGGAA+AGG | - | chr6_1:28391489-28391508 | None:intergenic | 35.0% | |
| TTCCTATGTTAAGTAAGCAG+TGG | + | chr6_1:28391489-28391508 | Msa0881340:intron | 35.0% | |
| AACCACTGCTTACTTAACAT+AGG | - | chr6_1:28391494-28391513 | None:intergenic | 35.0% | |
| CTTATCGATGGAAATTTGCA+AGG | + | chr6_1:28391583-28391602 | Msa0881340:CDS | 35.0% | |
| AATTCTAACAGTACCAAGGT+TGG | - | chr6_1:28391648-28391667 | None:intergenic | 35.0% | |
| ! | AGAATTTTGTCAATGCCTGA+AGG | + | chr6_1:28391662-28391681 | Msa0881340:intron | 35.0% |
| ! | GAATTTTGTCAATGCCTGAA+GGG | + | chr6_1:28391663-28391682 | Msa0881340:intron | 35.0% |
| GTAAGAACAACAAAGTGATG+AGG | + | chr6_1:28391848-28391867 | Msa0881340:CDS | 35.0% | |
| GCAGGAATCCTATACTAATA+TGG | + | chr6_1:28391914-28391933 | Msa0881340:CDS | 35.0% | |
| ! | TATGTTTTCTGCGTCAGTTT+AGG | + | chr6_1:28392158-28392177 | Msa0881340:CDS | 35.0% |
| TTACAGTGATGAAACCAAGA+CGG | - | chr6_1:28392216-28392235 | None:intergenic | 35.0% | |
| ! | ATATATGGTTAGAAGCATGG+AGG | + | chr6_1:28392384-28392403 | Msa0881340:CDS | 35.0% |
| ! | TTCATGGCATTCTAGGAATA+AGG | + | chr6_1:28392413-28392432 | Msa0881340:CDS | 35.0% |
| CAGGTCTGAATATATACTTC+TGG | + | chr6_1:28392679-28392698 | Msa0881340:intron | 35.0% | |
| ACATACAATTGCAGGGATAA+AGG | - | chr6_1:28392709-28392728 | None:intergenic | 35.0% | |
| TTTACTTGTGTTCTTGCACT+TGG | - | chr6_1:28392900-28392919 | None:intergenic | 35.0% | |
| TATGAATGAGGCCATTTCAA+AGG | - | chr6_1:28393095-28393114 | None:intergenic | 35.0% | |
| TTGAAATGGCCTCATTCATA+TGG | + | chr6_1:28393095-28393114 | Msa0881340:CDS | 35.0% | |
| TACCAATGTCCATATGAATG+AGG | - | chr6_1:28393107-28393126 | None:intergenic | 35.0% | |
| TCTTGTATGTCTATGTCTAG+TGG | + | chr6_1:28393219-28393238 | Msa0881340:intron | 35.0% | |
| CTTGTATGTCTATGTCTAGT+GGG | + | chr6_1:28393220-28393239 | Msa0881340:intron | 35.0% | |
| TTGTATGTCTATGTCTAGTG+GGG | + | chr6_1:28393221-28393240 | Msa0881340:intron | 35.0% | |
| ACCGAATGATGATCATGTAA+TGG | - | chr6_1:28393277-28393296 | None:intergenic | 35.0% | |
| TCTCTCAAGAGTTCTTTGTT+AGG | + | chr6_1:28393331-28393350 | Msa0881340:intron | 35.0% | |
| CCTGTGAAACTATTACATTC+AGG | - | chr6_1:28393481-28393500 | None:intergenic | 35.0% | |
| CCTGAATGTAATAGTTTCAC+AGG | + | chr6_1:28393478-28393497 | Msa0881340:CDS | 35.0% | |
| ! | TCACTCTTGTTTACTACAGA+TGG | + | chr6_1:28393641-28393660 | Msa0881340:intron | 35.0% |
| ! | CACTCTTGTTTACTACAGAT+GGG | + | chr6_1:28393642-28393661 | Msa0881340:intron | 35.0% |
| TTAGAGATTCCTTACACAGT+TGG | + | chr6_1:28393700-28393719 | Msa0881340:CDS | 35.0% | |
| TAGTGCGAATTGATATGTAC+GGG | - | chr6_1:28393945-28393964 | None:intergenic | 35.0% | |
| GTAGTGCGAATTGATATGTA+CGG | - | chr6_1:28393946-28393965 | None:intergenic | 35.0% | |
| ! | GTTTAGTTGAAAGGTGCATG+TGG | - | chr6_1:28389225-28389244 | None:intergenic | 40.0% |
| ! | GACACTTCTCTTTTCCTTTC+TGG | + | chr6_1:28389285-28389304 | Msa0881340:five_prime_UTR | 40.0% |
| !! | CACTTTTGACTCAAAGCAGA+TGG | - | chr6_1:28389314-28389333 | None:intergenic | 40.0% |
| ACCTACATATTCAGTTGCCT+CGG | + | chr6_1:28389453-28389472 | Msa0881340:CDS | 40.0% | |
| ! | ATGTTTGGTTGGTATCACGA+TGG | + | chr6_1:28389577-28389596 | Msa0881340:intron | 40.0% |
| !! | CGATGGATTGGATAAAATCG+CGG | + | chr6_1:28389594-28389613 | Msa0881340:intron | 40.0% |
| TAAAAGAATCAGGAGGATGC+TGG | - | chr6_1:28389956-28389975 | None:intergenic | 40.0% | |
| ! | TGACTAGCCAACAAATCTAG+AGG | - | chr6_1:28390003-28390022 | None:intergenic | 40.0% |
| AGTGGTTGAAGAAGACAAGA+AGG | + | chr6_1:28390153-28390172 | Msa0881340:intron | 40.0% | |
| GTTGAAGAAGACAAGAAGGA+AGG | + | chr6_1:28390157-28390176 | Msa0881340:CDS | 40.0% | |
| !! | GTGTTTTTGAGCTAGTTGGT+AGG | - | chr6_1:28390234-28390253 | None:intergenic | 40.0% |
| TAAGGACACTAGGGTGATTA+TGG | + | chr6_1:28390259-28390278 | Msa0881340:intron | 40.0% | |
| CTCAAGCACATAAAGCATAG+TGG | - | chr6_1:28390287-28390306 | None:intergenic | 40.0% | |
| TGAGTGAAGATTAGAGAGTG+AGG | + | chr6_1:28390329-28390348 | Msa0881340:intron | 40.0% | |
| !!! | GACACTGCTAACTTTTTCAG+TGG | - | chr6_1:28390362-28390381 | None:intergenic | 40.0% |
| CAGCATCAACTCTATCAACA+AGG | - | chr6_1:28390589-28390608 | None:intergenic | 40.0% | |
| !! | TTGATAGAGTTGATGCTGCT+TGG | + | chr6_1:28390591-28390610 | Msa0881340:intron | 40.0% |
| !! | TGATAGAGTTGATGCTGCTT+GGG | + | chr6_1:28390592-28390611 | Msa0881340:intron | 40.0% |
| ATTCCAAAGGGACTGTATAG+TGG | + | chr6_1:28390777-28390796 | Msa0881340:CDS | 40.0% | |
| ATGTTACCTCTCCACATTGA+TGG | - | chr6_1:28390809-28390828 | None:intergenic | 40.0% | |
| !! | TGTTGGTTTAGCAATGAGCA+AGG | + | chr6_1:28390999-28391018 | Msa0881340:CDS | 40.0% |
| !!! | GCAGTGGTTTAGTTTTTCTG+TGG | + | chr6_1:28391505-28391524 | Msa0881340:intron | 40.0% |
| ! | AGATCTATAGTTGGTGCAGA+TGG | + | chr6_1:28391539-28391558 | Msa0881340:intron | 40.0% |
| ! | GATCTATAGTTGGTGCAGAT+GGG | + | chr6_1:28391540-28391559 | Msa0881340:intron | 40.0% |
| ! | TTCATTGATGACACCAACCT+TGG | + | chr6_1:28391632-28391651 | Msa0881340:intron | 40.0% |
| ! | CAGTGGAAATTTTTCCCTTC+AGG | - | chr6_1:28391680-28391699 | None:intergenic | 40.0% |
| ACTAAGTTTGATCGGCTACA+TGG | - | chr6_1:28391757-28391776 | None:intergenic | 40.0% | |
| ATGTAGCCGATCAAACTTAG+TGG | + | chr6_1:28391756-28391775 | Msa0881340:intron | 40.0% | |
| TGTAGCCGATCAAACTTAGT+GGG | + | chr6_1:28391757-28391776 | Msa0881340:intron | 40.0% | |
| CCTATCCCACTAAGTTTGAT+CGG | - | chr6_1:28391765-28391784 | None:intergenic | 40.0% | |
| CGATCAAACTTAGTGGGATA+GGG | + | chr6_1:28391763-28391782 | Msa0881340:intron | 40.0% | |
| AGAACAACAAAGTGATGAGG+CGG | + | chr6_1:28391851-28391870 | Msa0881340:CDS | 40.0% | |
| GAAAACATAGCTGCAATGCA+AGG | - | chr6_1:28392147-28392166 | None:intergenic | 40.0% | |
| GACGAATTTCATGGCATTCT+AGG | + | chr6_1:28392406-28392425 | Msa0881340:CDS | 40.0% | |
| TGCATCTTTGTGAACATCCA+TGG | + | chr6_1:28392567-28392586 | Msa0881340:CDS | 40.0% | |
| CCAGATTTCAAGCGCTAAAA+TGG | - | chr6_1:28392865-28392884 | None:intergenic | 40.0% | |
| !! | CCATTTTAGCGCTTGAAATC+TGG | + | chr6_1:28392862-28392881 | Msa0881340:intron | 40.0% |
| ! | CATGCAGAATGCCTTTGAAA+TGG | + | chr6_1:28393081-28393100 | Msa0881340:intron | 40.0% |
| ATCATCATTCGGTTGACATC+TGG | + | chr6_1:28393284-28393303 | Msa0881340:CDS | 40.0% | |
| TCATCATTCGGTTGACATCT+GGG | + | chr6_1:28393285-28393304 | Msa0881340:CDS | 40.0% | |
| TCTCTTACACCAACTGTGTA+AGG | - | chr6_1:28393712-28393731 | None:intergenic | 40.0% | |
| !! | CTCATCGATCGTTGATTCTA+GGG | - | chr6_1:28393781-28393800 | None:intergenic | 40.0% |
| !! | TCTCATCGATCGTTGATTCT+AGG | - | chr6_1:28393782-28393801 | None:intergenic | 40.0% |
| TAGAATCAACGATCGATGAG+AGG | + | chr6_1:28393781-28393800 | Msa0881340:CDS | 40.0% | |
| AGAATCAACGATCGATGAGA+GGG | + | chr6_1:28393782-28393801 | Msa0881340:CDS | 40.0% | |
| CGAATTGATATGTACGGGTT+CGG | - | chr6_1:28393940-28393959 | None:intergenic | 40.0% | |
| CAACAATGTTGTCAACGTAG+AGG | + | chr6_1:28393965-28393984 | Msa0881340:CDS | 40.0% | |
| AGTTCTACTGCATACCAAGA+AGG | + | chr6_1:28394055-28394074 | Msa0881340:three_prime_UTR | 40.0% | |
| AAAGCAGATGGGATCCAGAA+AGG | - | chr6_1:28389302-28389321 | None:intergenic | 45.0% | |
| ACCGAGGCAACTGAATATGT+AGG | - | chr6_1:28389457-28389476 | None:intergenic | 45.0% | |
| CATGGTCTTTGTCTGCTTCT+TGG | + | chr6_1:28389486-28389505 | Msa0881340:CDS | 45.0% | |
| ! | GAGCGTTCTATCTACCGTTT+TGG | + | chr6_1:28389511-28389530 | Msa0881340:CDS | 45.0% |
| ! | TGGTTGGTATCACGATGGAT+TGG | + | chr6_1:28389582-28389601 | Msa0881340:intron | 45.0% |
| ! | TGGATTGGATAAAATCGCGG+TGG | + | chr6_1:28389597-28389616 | Msa0881340:intron | 45.0% |
| ! | TGCTACTTGGCATGAGAGAA+TGG | + | chr6_1:28389739-28389758 | Msa0881340:intron | 45.0% |
| TTTCTTGGCTATGCATGCAG+TGG | + | chr6_1:28390135-28390154 | Msa0881340:intron | 45.0% | |
| !!! | GAAGGCACTTTTTGCTTCTC+TGG | + | chr6_1:28390175-28390194 | Msa0881340:CDS | 45.0% |
| TGTTAGCACAAAGCGCAAGA+TGG | + | chr6_1:28390628-28390647 | Msa0881340:CDS | 45.0% | |
| TGACATGCTCAATCATGGGA+AGG | - | chr6_1:28390719-28390738 | None:intergenic | 45.0% | |
| CTGTATAGTTGTCTCGCTGT+TGG | + | chr6_1:28390982-28391001 | Msa0881340:CDS | 45.0% | |
| ACACCTCAAGTTCCTCCATT+GGG | - | chr6_1:28391152-28391171 | None:intergenic | 45.0% | |
| TTGGTGCAGATGGGAAAATC+AGG | + | chr6_1:28391549-28391568 | Msa0881340:CDS | 45.0% | |
| ATGGGAAAATCAGGCTACGA+TGG | + | chr6_1:28391558-28391577 | Msa0881340:CDS | 45.0% | |
| CCGATCAAACTTAGTGGGAT+AGG | + | chr6_1:28391762-28391781 | Msa0881340:intron | 45.0% | |
| AAACTTAGTGGGATAGGGCT+TGG | + | chr6_1:28391768-28391787 | Msa0881340:intron | 45.0% | |
| ! | AGACGCGTGATGGAAAACAA+AGG | - | chr6_1:28391884-28391903 | None:intergenic | 45.0% |
| AGTATAGGATTCCTGCTCCA+CGG | - | chr6_1:28391910-28391929 | None:intergenic | 45.0% | |
| AGCATGGAGGACGAATTTCA+TGG | + | chr6_1:28392397-28392416 | Msa0881340:CDS | 45.0% | |
| AACCAAAAAAGACCATCGCG+CGG | - | chr6_1:28392924-28392943 | None:intergenic | 45.0% | |
| GGCCTCATTCATATGGACAT+TGG | + | chr6_1:28393102-28393121 | Msa0881340:CDS | 45.0% | |
| GAACAAGAACACTGCAATGC+AGG | - | chr6_1:28393430-28393449 | None:intergenic | 45.0% | |
| GCAGTGTTCTTGTTCAGTTC+TGG | + | chr6_1:28393435-28393454 | Msa0881340:intron | 45.0% | |
| GACGAGATAACAGTGGTATC+CGG | + | chr6_1:28393804-28393823 | Msa0881340:CDS | 45.0% | |
| CAATGTTGTCAACGTAGAGG+AGG | + | chr6_1:28393968-28393987 | Msa0881340:CDS | 45.0% | |
| !! | TTTATTATATATAATTAACT+TGG | + | chr6_1:28390557-28390576 | Msa0881340:intron | 5.0% |
| ! | TGAAAGGTGCATGTGGAGAG+AGG | - | chr6_1:28389218-28389237 | None:intergenic | 50.0% |
| ATGGAACATGCTGTGGAGCA+AGG | + | chr6_1:28389412-28389431 | Msa0881340:CDS | 50.0% | |
| TGCCTCGGTTGTTACTGTCA+TGG | + | chr6_1:28389468-28389487 | Msa0881340:CDS | 50.0% | |
| GACCATGACAGTAACAACCG+AGG | - | chr6_1:28389473-28389492 | None:intergenic | 50.0% | |
| TGGATAAAATCGCGGTGGCA+CGG | + | chr6_1:28389602-28389621 | Msa0881340:intron | 50.0% | |
| GCACCACTATACAGTCCCTT+TGG | - | chr6_1:28390783-28390802 | None:intergenic | 50.0% | |
| AGTGGTGCACTCCATCAATG+TGG | + | chr6_1:28390795-28390814 | Msa0881340:CDS | 50.0% | |
| TGCACTCCATCAATGTGGAG+AGG | + | chr6_1:28390800-28390819 | Msa0881340:CDS | 50.0% | |
| CTACCCAATGGAGGAACTTG+AGG | + | chr6_1:28391146-28391165 | Msa0881340:intron | 50.0% | |
| GACACCTCAAGTTCCTCCAT+TGG | - | chr6_1:28391153-28391172 | None:intergenic | 50.0% | |
| GCTACGATGGCTCTTATCGA+TGG | + | chr6_1:28391571-28391590 | Msa0881340:CDS | 50.0% | |
| ACCTCCTTGAACTTTGCAGC+TGG | + | chr6_1:28392520-28392539 | Msa0881340:intron | 50.0% | |
| CTTGAAATCTGGCAGCAGCA+GGG | + | chr6_1:28392873-28392892 | Msa0881340:CDS | 50.0% | |
| GATGGGATCGCGATGTAAGA+AGG | + | chr6_1:28393659-28393678 | Msa0881340:intron | 50.0% | |
| TGAGAGGGACGAGATAACAG+TGG | + | chr6_1:28393797-28393816 | Msa0881340:CDS | 50.0% | |
| ! | AGTTGTTCGAGTTAGCGTGC+CGG | - | chr6_1:28393826-28393845 | None:intergenic | 50.0% |
| ATGTACGGGTTCGGACAGAT+CGG | - | chr6_1:28393931-28393950 | None:intergenic | 50.0% | |
| ATAAAATCGCGGTGGCACGG+TGG | + | chr6_1:28389605-28389624 | Msa0881340:intron | 55.0% | |
| !! | GGGAAGGTCTTGTTCAGCAC+AGG | - | chr6_1:28390703-28390722 | None:intergenic | 55.0% |
| AAGGTCTTGAGCAGCTGCAC+CGG | + | chr6_1:28390929-28390948 | Msa0881340:CDS | 55.0% | |
| GATTACCTCGCACTCCGTCT+TGG | + | chr6_1:28392199-28392218 | Msa0881340:CDS | 55.0% | |
| TGAAACCAAGACGGAGTGCG+AGG | - | chr6_1:28392207-28392226 | None:intergenic | 55.0% | |
| GCCAGCTGCAAAGTTCAAGG+AGG | - | chr6_1:28392524-28392543 | None:intergenic | 55.0% | |
| AACTTTGCAGCTGGCCGCTT+TGG | + | chr6_1:28392529-28392548 | Msa0881340:intron | 55.0% | |
| GCTTGAAATCTGGCAGCAGC+AGG | + | chr6_1:28392872-28392891 | Msa0881340:CDS | 55.0% | |
| ACACAAGTAAAGCCGCGCGA+TGG | + | chr6_1:28392909-28392928 | Msa0881340:CDS | 55.0% | |
| !!! | AGCCGCGCGATGGTCTTTTT+TGG | + | chr6_1:28392919-28392938 | Msa0881340:CDS | 55.0% |
| TCCATCACGCGTCTCATCCG+TGG | + | chr6_1:28391890-28391909 | Msa0881340:CDS | 60.0% | |
| TCCACGGATGAGACGCGTGA+TGG | - | chr6_1:28391894-28391913 | None:intergenic | 60.0% | |
| GCGGCCAGCTGCAAAGTTCA+AGG | - | chr6_1:28392527-28392546 | None:intergenic | 60.0% | |
| ACGCGTCTCATCCGTGGAGC+AGG | + | chr6_1:28391896-28391915 | Msa0881340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28389165 | 28394137 | 28389165 | ID=Msa0881340;Name=Msa0881340 |
| chr6_1 | mRNA | 28389165 | 28394137 | 28389165 | ID=Msa0881340-mRNA-1;Parent=Msa0881340;Name=Msa0881340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=247|0.92|0.92|1|1|1|14|106|516 |
| chr6_1 | exon | 28389165 | 28389537 | 28389165 | ID=Msa0881340-mRNA-1:exon:7176;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28390155 | 28390212 | 28390155 | ID=Msa0881340-mRNA-1:exon:7177;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28390598 | 28390821 | 28390598 | ID=Msa0881340-mRNA-1:exon:7178;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28390904 | 28391020 | 28390904 | ID=Msa0881340-mRNA-1:exon:7179;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28391541 | 28391604 | 28391541 | ID=Msa0881340-mRNA-1:exon:7180;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28391848 | 28391939 | 28391848 | ID=Msa0881340-mRNA-1:exon:7181;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28392157 | 28392231 | 28392157 | ID=Msa0881340-mRNA-1:exon:7182;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28392349 | 28392434 | 28392349 | ID=Msa0881340-mRNA-1:exon:7183;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28392539 | 28392588 | 28392539 | ID=Msa0881340-mRNA-1:exon:7184;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28392871 | 28392992 | 28392871 | ID=Msa0881340-mRNA-1:exon:7185;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28393088 | 28393123 | 28393088 | ID=Msa0881340-mRNA-1:exon:7186;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28393239 | 28393306 | 28393239 | ID=Msa0881340-mRNA-1:exon:7187;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28393439 | 28393499 | 28393439 | ID=Msa0881340-mRNA-1:exon:7188;Parent=Msa0881340-mRNA-1 |
| chr6_1 | exon | 28393660 | 28394137 | 28393660 | ID=Msa0881340-mRNA-1:exon:7189;Parent=Msa0881340-mRNA-1 |
| chr6_1 | five_prime_UTR | 28389165 | 28389411 | 28389165 | ID=Msa0881340-mRNA-1:five_prime_utr;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28389412 | 28389537 | 28389412 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28390155 | 28390212 | 28390155 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28390598 | 28390821 | 28390598 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28390904 | 28391020 | 28390904 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28391541 | 28391604 | 28391541 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28391848 | 28391939 | 28391848 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28392157 | 28392231 | 28392157 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28392349 | 28392434 | 28392349 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28392539 | 28392588 | 28392539 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28392871 | 28392992 | 28392871 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28393088 | 28393123 | 28393088 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28393239 | 28393306 | 28393239 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28393439 | 28393499 | 28393439 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | CDS | 28393660 | 28394031 | 28393660 | ID=Msa0881340-mRNA-1:cds;Parent=Msa0881340-mRNA-1 |
| chr6_1 | three_prime_UTR | 28394032 | 28394137 | 28394032 | ID=Msa0881340-mRNA-1:three_prime_utr;Parent=Msa0881340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
