Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323340 | XP_003592974.2 | 93.648 | 551 | 5 | 1 | 1 | 521 | 1 | 551 | 0.0 | 1057 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323340 | sp|O23693|MLO4_ARATH | 66.208 | 509 | 126 | 7 | 1 | 477 | 1 | 495 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231170 | Msa0323340 | 0.813410 | 2.596607e-51 | -8.615850e-47 |
| Msa0323250 | Msa0323340 | 0.804815 | 1.802632e-49 | -8.615850e-47 |
| Msa0323340 | Msa0881340 | 0.804976 | 1.667637e-49 | -8.615850e-47 |
| Msa0323340 | Msa0966120 | 0.811398 | 7.140628e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323340 | MtrunA17_Chr2g0277471 | 93.648 | 551 | 5 | 1 | 1 | 521 | 1 | 551 | 0.0 | 1057 |
| Msa0323340 | MtrunA17_Chr2g0317801 | 42.023 | 514 | 245 | 7 | 1 | 473 | 1 | 502 | 4.47e-130 | 389 |
| Msa0323340 | MtrunA17_Chr5g0405641 | 47.804 | 387 | 164 | 9 | 1 | 350 | 2 | 387 | 5.10e-102 | 312 |
| Msa0323340 | MtrunA17_Chr2g0326301 | 35.611 | 483 | 259 | 11 | 8 | 441 | 7 | 486 | 4.29e-84 | 272 |
| Msa0323340 | MtrunA17_Chr6g0462051 | 34.719 | 481 | 256 | 13 | 9 | 442 | 9 | 478 | 4.16e-82 | 266 |
| Msa0323340 | MtrunA17_Chr3g0144171 | 35.421 | 463 | 252 | 11 | 1 | 423 | 1 | 456 | 1.41e-81 | 264 |
| Msa0323340 | MtrunA17_Chr3g0145831 | 34.879 | 453 | 239 | 8 | 10 | 414 | 13 | 457 | 2.46e-76 | 249 |
| Msa0323340 | MtrunA17_Chr5g0407381 | 32.336 | 535 | 276 | 17 | 9 | 490 | 28 | 529 | 1.48e-75 | 249 |
| Msa0323340 | MtrunA17_Chr8g0337941 | 32.143 | 476 | 264 | 7 | 9 | 430 | 12 | 482 | 2.83e-73 | 241 |
| Msa0323340 | MtrunA17_Chr8g0370181 | 31.924 | 473 | 274 | 7 | 9 | 443 | 38 | 500 | 1.08e-72 | 241 |
| Msa0323340 | MtrunA17_Chr2g0291441 | 35.417 | 432 | 225 | 9 | 6 | 399 | 5 | 420 | 1.30e-70 | 233 |
| Msa0323340 | MtrunA17_Chr8g0337931 | 32.258 | 465 | 247 | 10 | 15 | 422 | 8 | 461 | 6.08e-67 | 224 |
| Msa0323340 | MtrunA17_Chr4g0040611 | 28.681 | 523 | 307 | 12 | 4 | 477 | 2 | 507 | 5.65e-62 | 213 |
| Msa0323340 | MtrunA17_Chr3g0144201 | 32.492 | 317 | 183 | 6 | 9 | 299 | 11 | 322 | 1.53e-47 | 173 |
| Msa0323340 | MtrunA17_Chr3g0144201 | 33.333 | 180 | 105 | 4 | 313 | 490 | 398 | 564 | 1.33e-17 | 85.9 |
| Msa0323340 | MtrunA17_Chr5g0405651 | 44.211 | 95 | 52 | 1 | 360 | 453 | 1 | 95 | 2.08e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0323340 | AT1G11000.1 | 66.208 | 509 | 126 | 7 | 1 | 477 | 1 | 495 | 0.0 | 656 |
| Msa0323340 | AT1G11000.3 | 66.208 | 509 | 126 | 7 | 1 | 477 | 1 | 495 | 0.0 | 656 |
| Msa0323340 | AT1G11000.2 | 65.842 | 404 | 105 | 3 | 1 | 373 | 1 | 402 | 0.0 | 520 |
| Msa0323340 | AT5G53760.2 | 43.633 | 479 | 224 | 5 | 9 | 447 | 16 | 488 | 1.11e-135 | 405 |
| Msa0323340 | AT5G53760.1 | 43.633 | 479 | 224 | 5 | 9 | 447 | 16 | 488 | 1.11e-135 | 405 |
| Msa0323340 | AT1G26700.1 | 43.326 | 487 | 232 | 5 | 9 | 455 | 10 | 492 | 9.83e-135 | 402 |
| Msa0323340 | AT1G26700.2 | 43.326 | 487 | 232 | 5 | 9 | 455 | 10 | 492 | 9.83e-135 | 402 |
| Msa0323340 | AT2G33670.1 | 34.152 | 448 | 252 | 8 | 9 | 423 | 15 | 452 | 4.39e-84 | 270 |
| Msa0323340 | AT4G02600.2 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 9.65e-83 | 266 |
| Msa0323340 | AT4G02600.1 | 37.313 | 469 | 240 | 12 | 1 | 421 | 1 | 463 | 9.65e-83 | 266 |
| Msa0323340 | AT4G24250.1 | 32.903 | 465 | 266 | 5 | 4 | 429 | 2 | 459 | 5.03e-81 | 261 |
| Msa0323340 | AT1G61560.1 | 33.192 | 473 | 267 | 10 | 9 | 435 | 8 | 477 | 1.15e-80 | 263 |
| Msa0323340 | AT2G44110.2 | 33.113 | 453 | 260 | 5 | 8 | 423 | 5 | 451 | 3.72e-80 | 259 |
| Msa0323340 | AT2G44110.1 | 33.333 | 453 | 258 | 6 | 8 | 423 | 5 | 450 | 1.55e-79 | 257 |
| Msa0323340 | AT2G39200.1 | 31.171 | 555 | 308 | 14 | 9 | 494 | 6 | 555 | 3.19e-79 | 259 |
| Msa0323340 | AT1G11310.1 | 32.563 | 476 | 269 | 9 | 9 | 435 | 8 | 480 | 9.08e-77 | 252 |
| Msa0323340 | AT1G42560.1 | 33.333 | 459 | 249 | 9 | 9 | 423 | 14 | 459 | 1.43e-76 | 249 |
| Msa0323340 | AT1G61560.4 | 32.632 | 475 | 267 | 12 | 9 | 435 | 8 | 477 | 8.61e-76 | 250 |
| Msa0323340 | AT2G17430.1 | 32.328 | 464 | 266 | 8 | 4 | 432 | 26 | 476 | 1.95e-73 | 243 |
| Msa0323340 | AT1G61560.10 | 33.180 | 434 | 241 | 10 | 9 | 396 | 8 | 438 | 3.72e-73 | 239 |
| Msa0323340 | AT5G65970.1 | 33.258 | 442 | 240 | 8 | 9 | 414 | 34 | 456 | 3.77e-69 | 232 |
| Msa0323340 | AT2G17480.1 | 32.353 | 442 | 257 | 7 | 9 | 414 | 39 | 474 | 2.39e-65 | 223 |
| Msa0323340 | AT4G24250.2 | 32.274 | 409 | 231 | 5 | 4 | 373 | 2 | 403 | 3.98e-65 | 217 |
| Msa0323340 | AT3G45290.1 | 31.510 | 457 | 266 | 11 | 3 | 423 | 9 | 454 | 2.76e-64 | 218 |
| Msa0323340 | AT1G61560.7 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 4.92e-64 | 214 |
| Msa0323340 | AT1G61560.9 | 31.873 | 411 | 231 | 10 | 9 | 373 | 8 | 415 | 4.92e-64 | 214 |
| Msa0323340 | AT1G61560.2 | 32.057 | 418 | 235 | 10 | 64 | 435 | 1 | 415 | 7.06e-63 | 214 |
| Msa0323340 | AT1G61560.3 | 32.057 | 418 | 235 | 10 | 64 | 435 | 1 | 415 | 7.06e-63 | 214 |
| Msa0323340 | AT1G11310.2 | 31.884 | 414 | 230 | 9 | 9 | 373 | 8 | 418 | 1.32e-61 | 208 |
| Msa0323340 | AT1G61560.6 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 5.29e-59 | 201 |
| Msa0323340 | AT1G61560.8 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 5.29e-59 | 201 |
| Msa0323340 | AT1G61560.5 | 31.783 | 387 | 215 | 10 | 9 | 349 | 8 | 391 | 5.29e-59 | 201 |
| Msa0323340 | AT1G11310.3 | 30.641 | 421 | 240 | 9 | 64 | 435 | 1 | 418 | 2.35e-57 | 199 |
| Msa0323340 | AT1G42560.2 | 31.016 | 374 | 201 | 9 | 9 | 338 | 14 | 374 | 5.70e-49 | 173 |
| Msa0323340 | AT5G65970.2 | 34.899 | 298 | 176 | 6 | 4 | 300 | 31 | 311 | 1.07e-47 | 172 |
Find 105 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTCTTTGTCTGCTTCT+TGG | 0.198947 | 2_4:-27000771 | Msa0323340:CDS |
| CATACAGTTTGTGATATTTC+AGG | 0.214387 | 2_4:-26997290 | Msa0323340:intron |
| TCTCATCGATCGTTGATTCT+AGG | 0.269205 | 2_4:+26996467 | None:intergenic |
| AACTTTGCAGCTGGCCGCTT+TGG | 0.282048 | 2_4:-26997732 | Msa0323340:intron |
| TACTCTATAGAATTCCTTCT+TGG | 0.285750 | 2_4:+26996177 | None:intergenic |
| TTCATGGCATTCTAGGAATA+AGG | 0.290919 | 2_4:-26997848 | Msa0323340:intron |
| ATCATCATTCGGTTGACATC+TGG | 0.296844 | 2_4:-26996977 | Msa0323340:CDS |
| CCTGTGAAACTATTACATTC+AGG | 0.321958 | 2_4:+26996783 | None:intergenic |
| GCAGTGTTCTTGTTCAGTTC+TGG | 0.326834 | 2_4:-26996826 | Msa0323340:intron |
| GAGCGTTCTATCTACCGTTT+TGG | 0.346359 | 2_4:-27000746 | Msa0323340:CDS |
| GACGAATTTCATGGCATTCT+AGG | 0.354070 | 2_4:-26997855 | Msa0323340:CDS |
| ATTCAAAGACTCTAAGTCTA+AGG | 0.354684 | 2_4:+26996399 | None:intergenic |
| TTGAAATGGCCTCATTCATA+TGG | 0.364022 | 2_4:-26997166 | Msa0323340:CDS |
| GCAGGAATCCTATACTAATA+TGG | 0.364635 | 2_4:-26998347 | Msa0323340:CDS |
| TGGGCTTATCTCTTTGTTGT+TGG | 0.367677 | 2_4:-26999651 | Msa0323340:CDS |
| ATATAGAGTTGATGCTGCTT+GGG | 0.376448 | 2_4:-26999670 | Msa0323340:intron |
| ATGATCCATAACAATATATC+TGG | 0.379893 | 2_4:+26997310 | None:intergenic |
| ATGTTACCTCTCCACATTGA+TGG | 0.395745 | 2_4:+26999456 | None:intergenic |
| GATATAGAGTTGATGCTGCT+TGG | 0.400458 | 2_4:-26999671 | Msa0323340:intron |
| GAACCATTTGTTTCATATGA+AGG | 0.417481 | 2_4:-26999352 | Msa0323340:CDS |
| ATTACCATCCATATTAGTAT+AGG | 0.427214 | 2_4:+26998339 | None:intergenic |
| GCTTGAAATCTGGCAGCAGC+AGG | 0.448228 | 2_4:-26997389 | Msa0323340:CDS |
| AATCATGACATGCTCAATCA+TGG | 0.454257 | 2_4:+26999541 | None:intergenic |
| TTTACTTGTGTTCTTGCACT+TGG | 0.457809 | 2_4:+26997364 | None:intergenic |
| TCTCTTACACCAACTGTGTA+AGG | 0.457899 | 2_4:+26996552 | None:intergenic |
| GATGTAAGAAGAAATTATAA+TGG | 0.460054 | 2_4:-27000864 | Msa0323340:exon |
| TCATCATTCGGTTGACATCT+GGG | 0.460436 | 2_4:-26996976 | Msa0323340:intron |
| CTCATCGATCGTTGATTCTA+GGG | 0.460757 | 2_4:+26996468 | None:intergenic |
| TTGGTGCAGATGGGAAAATC+AGG | 0.462485 | 2_4:-26998713 | Msa0323340:CDS |
| GCACCACTATACAGTCCCTT+TGG | 0.464450 | 2_4:+26999482 | None:intergenic |
| AGATCTATAGTTGGTGCAGA+TGG | 0.465675 | 2_4:-26998723 | Msa0323340:CDS |
| CTGTATAGTTGTCTCGCTGT+TGG | 0.467163 | 2_4:-26999280 | Msa0323340:CDS |
| CTGTGAAACTATTACATTCA+GGG | 0.479207 | 2_4:+26996784 | None:intergenic |
| ACGCGTCTCATCCGTGGAGC+AGG | 0.483102 | 2_4:-26998365 | Msa0323340:CDS |
| AGACCTTCATATGAAACAAA+TGG | 0.484020 | 2_4:+26999349 | None:intergenic |
| ACCATTACATGATCATCATT+CGG | 0.484425 | 2_4:-26996988 | Msa0323340:CDS |
| CATGCAGAATGCCTTTGAAA+TGG | 0.490679 | 2_4:-26997180 | Msa0323340:intron |
| GATTACCTCGCACTCCGTCT+TGG | 0.495055 | 2_4:-26998062 | Msa0323340:CDS |
| CGAATTGATATGTACGGGTT+CGG | 0.496092 | 2_4:+26996309 | None:intergenic |
| TGTGTTTGTAGATCTATAGT+TGG | 0.500413 | 2_4:-26998732 | Msa0323340:intron |
| CCTGAATGTAATAGTTTCAC+AGG | 0.501576 | 2_4:-26996783 | Msa0323340:intron |
| GACGAGATAACAGTGGTATC+CGG | 0.506598 | 2_4:-26996442 | Msa0323340:CDS |
| ATATGATTAGTTTAGTTGAA+AGG | 0.511926 | 2_4:+27001026 | None:intergenic |
| AGTTCTACTGCATACCAAGA+AGG | 0.524545 | 2_4:-26996191 | Msa0323340:three_prime_UTR |
| TGCCTCGGTTGTTACTGTCA+TGG | 0.525886 | 2_4:-27000789 | Msa0323340:CDS |
| GATGGGATCGCGATGTAAGA+AGG | 0.529541 | 2_4:-26996602 | Msa0323340:CDS |
| TTATGAAAATCATATGATAA+CGG | 0.534435 | 2_4:+26997900 | None:intergenic |
| TAAATATATGGTTAGAAGCA+TGG | 0.536505 | 2_4:-26997880 | Msa0323340:CDS |
| TAGAATCAACGATCGATGAG+AGG | 0.539794 | 2_4:-26996465 | Msa0323340:CDS |
| ATTCCAAAGGGACTGTATAG+TGG | 0.539888 | 2_4:-26999485 | Msa0323340:CDS |
| TCCATCACGCGTCTCATCCG+TGG | 0.543333 | 2_4:-26998371 | Msa0323340:CDS |
| TTAGAGATTCCTTACACAGT+TGG | 0.545309 | 2_4:-26996561 | Msa0323340:CDS |
| AAGGTCTTGAGCAGCTGCAC+CGG | 0.549157 | 2_4:-26999333 | Msa0323340:CDS |
| ACCTACATATTCAGTTGCCT+CGG | 0.550052 | 2_4:-27000804 | Msa0323340:CDS |
| AGCATGGAGGACGAATTTCA+TGG | 0.554354 | 2_4:-26997864 | Msa0323340:CDS |
| TAGTGCGAATTGATATGTAC+GGG | 0.554406 | 2_4:+26996304 | None:intergenic |
| TATGAATGAGGCCATTTCAA+AGG | 0.559827 | 2_4:+26997169 | None:intergenic |
| TCTCTGGAGAAAATTAAAGA+AGG | 0.561099 | 2_4:-27000069 | Msa0323340:intron |
| TGCATCTTTGTGAACATCCA+TGG | 0.561195 | 2_4:-26997694 | Msa0323340:intron |
| GGGAAGGTCTTGTTCAGCAC+AGG | 0.563562 | 2_4:+26999562 | None:intergenic |
| AATTATAATGGAACATGCTG+TGG | 0.564038 | 2_4:-27000852 | Msa0323340:exon |
| GATCTATAGTTGGTGCAGAT+GGG | 0.565228 | 2_4:-26998722 | Msa0323340:CDS |
| AGAATCAACGATCGATGAGA+GGG | 0.566055 | 2_4:-26996464 | Msa0323340:CDS |
| AAAGCAGATGGGATCCAGAA+AGG | 0.568854 | 2_4:+27000958 | None:intergenic |
| GATGAAACTACTATTCCAAA+GGG | 0.569451 | 2_4:-26999497 | Msa0323340:CDS |
| CTTATCGATGGAAATTTGCA+AGG | 0.569789 | 2_4:-26998679 | Msa0323340:intron |
| TGTTGGCACAAAGCGCAAGA+TGG | 0.569929 | 2_4:-26999634 | Msa0323340:CDS |
| GTAGTGCGAATTGATATGTA+CGG | 0.573297 | 2_4:+26996303 | None:intergenic |
| ATGTACGGGTTCGGACAGAT+CGG | 0.573862 | 2_4:+26996318 | None:intergenic |
| GAATCCTATACTAATATGGA+TGG | 0.575461 | 2_4:-26998343 | Msa0323340:intron |
| ATGGAACATGCTGTGGAGCA+AGG | 0.578849 | 2_4:-27000845 | Msa0323340:CDS |
| GGCCTCATTCATATGGACAT+TGG | 0.579307 | 2_4:-26997159 | Msa0323340:intron |
| TACCAATGTCCATATGAATG+AGG | 0.584051 | 2_4:+26997157 | None:intergenic |
| GCTACGATGGCTCTTATCGA+TGG | 0.590315 | 2_4:-26998691 | Msa0323340:CDS |
| TGATCAAATCAAAAGTGAGT+AGG | 0.591418 | 2_4:-27001103 | None:intergenic |
| ATCATGACATGCTCAATCAT+GGG | 0.591999 | 2_4:+26999542 | None:intergenic |
| GTTTAGTTGAAAGGTGCATG+TGG | 0.594354 | 2_4:+27001035 | None:intergenic |
| CTTGAAATCTGGCAGCAGCA+GGG | 0.595998 | 2_4:-26997388 | Msa0323340:CDS |
| ACCGAATGATGATCATGTAA+TGG | 0.596192 | 2_4:+26996987 | None:intergenic |
| AGTGGTTGAAGAAGACAAGA+AGG | 0.601038 | 2_4:-27000107 | Msa0323340:CDS |
| AGATGAAACTACTATTCCAA+AGG | 0.604783 | 2_4:-26999498 | Msa0323340:CDS |
| ATGGGAAAATCAGGCTACGA+TGG | 0.609996 | 2_4:-26998704 | Msa0323340:CDS |
| AGTATAGGATTCCTGCTCCA+CGG | 0.621498 | 2_4:+26998354 | None:intergenic |
| TGAAAGGTGCATGTGGAGAG+AGG | 0.623118 | 2_4:+27001042 | None:intergenic |
| ACACAAGTAAAGCCGCGCGA+TGG | 0.629938 | 2_4:-26997352 | Msa0323340:CDS |
| TGACATGCTCAATCATGGGA+AGG | 0.634182 | 2_4:+26999546 | None:intergenic |
| GTTGAAGAAGACAAGAAGGA+AGG | 0.636202 | 2_4:-27000103 | Msa0323340:CDS |
| TGTTGGTTTAGCAATGAGCA+AGG | 0.642368 | 2_4:-26999263 | Msa0323340:intron |
| AGTTGTTCGAGTTAGCGTGC+CGG | 0.646338 | 2_4:+26996423 | None:intergenic |
| CGATGTTGTCAACGTAGAGG+AGG | 0.646368 | 2_4:-26996278 | Msa0323340:CDS |
| TCCACGGATGAGACGCGTGA+TGG | 0.651042 | 2_4:+26998370 | None:intergenic |
| TGTGAAACTATTACATTCAG+GGG | 0.651741 | 2_4:+26996785 | None:intergenic |
| AGAACAACAAAGTGATGAGG+CGG | 0.652562 | 2_4:-26998410 | Msa0323340:CDS |
| TGAAACCAAGACGGAGTGCG+AGG | 0.667590 | 2_4:+26998057 | None:intergenic |
| GTAAGAACAACAAAGTGATG+AGG | 0.668841 | 2_4:-26998413 | Msa0323340:CDS |
| ACCGAGGCAACTGAATATGT+AGG | 0.669841 | 2_4:+27000803 | None:intergenic |
| TGCACTCCATCAATGTGGAG+AGG | 0.673997 | 2_4:-26999462 | Msa0323340:intron |
| CAACGATGTTGTCAACGTAG+AGG | 0.682543 | 2_4:-26996281 | Msa0323340:CDS |
| TTACAGTGATGAAACCAAGA+CGG | 0.701613 | 2_4:+26998048 | None:intergenic |
| AGTGGTGCACTCCATCAATG+TGG | 0.709568 | 2_4:-26999467 | Msa0323340:CDS |
| GACCATGACAGTAACAACCG+AGG | 0.728387 | 2_4:+27000787 | None:intergenic |
| ACTATAGTATAAATCCAAAG+CGG | 0.728488 | 2_4:+26997718 | None:intergenic |
| AGACGCGTGATGGAAAACAA+AGG | 0.729624 | 2_4:+26998380 | None:intergenic |
| TGAGAGGGACGAGATAACAG+TGG | 0.741797 | 2_4:-26996449 | Msa0323340:CDS |
| ATATATGGTTAGAAGCATGG+AGG | 0.760811 | 2_4:-26997877 | Msa0323340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAAATAAAAGAATC+AGG | + | chr2_4:26996929-26996948 | None:intergenic | 10.0% |
| !!! | ATATGATTTTCATAAATATA+TGG | - | chr2_4:26999331-26999350 | Msa0323340:CDS | 10.0% |
| !!! | AAAAGTGTTTTTTTAATGAA+AGG | - | chr2_4:26996293-26996312 | Msa0323340:CDS | 15.0% |
| !!! | TTTAATTGATTTTATTCTAC+AGG | - | chr2_4:26998788-26998807 | Msa0323340:intron | 15.0% |
| !! | TATAAAATATTATATCAGTG+AGG | + | chr2_4:26999252-26999271 | None:intergenic | 15.0% |
| !! | TTATGAAAATCATATGATAA+CGG | + | chr2_4:26999326-26999345 | None:intergenic | 15.0% |
| !!! | ATATGATTAGTTTAGTTGAA+AGG | + | chr2_4:26996200-26996219 | None:intergenic | 20.0% |
| !! | GATGTAAGAAGAAATTATAA+TGG | - | chr2_4:26996359-26996378 | Msa0323340:CDS | 20.0% |
| !! | CAGTTTATTTGGTATATATT+TGG | + | chr2_4:26996605-26996624 | None:intergenic | 20.0% |
| !! | AATAACAAGCAAATAGTTAA+GGG | + | chr2_4:26996677-26996696 | None:intergenic | 20.0% |
| !! | AAATAACAAGCAAATAGTTA+AGG | + | chr2_4:26996678-26996697 | None:intergenic | 20.0% |
| !!! | TTATTTGTTATTTTGCTACT+TGG | - | chr2_4:26996692-26996711 | Msa0323340:intron | 20.0% |
| !!! | TGTTGAAATTGCTTTTTATT+TGG | - | chr2_4:26996732-26996751 | Msa0323340:intron | 20.0% |
| !! | CAAATTTATTACATTCTGAT+AGG | - | chr2_4:26996872-26996891 | Msa0323340:intron | 20.0% |
| !! | GTTAGTGTTTGATATTAATT+AGG | - | chr2_4:26996894-26996913 | Msa0323340:intron | 20.0% |
| !! | TTTATTGTTATACCTAAGAT+TGG | - | chr2_4:26998003-26998022 | Msa0323340:intron | 20.0% |
| !! | AAAATATGTAAGTATAAGGT+TGG | + | chr2_4:26999061-26999080 | None:intergenic | 20.0% |
| !!! | ACCTTATACTTACATATTTT+AGG | - | chr2_4:26999061-26999080 | Msa0323340:intron | 20.0% |
| !!! | CCTTATACTTACATATTTTA+GGG | - | chr2_4:26999062-26999081 | Msa0323340:intron | 20.0% |
| !! | TTATTATACATACAATTGCA+GGG | + | chr2_4:26999678-26999697 | None:intergenic | 20.0% |
| !! | ATTATTATACATACAATTGC+AGG | + | chr2_4:26999679-26999698 | None:intergenic | 20.0% |
| !!! | TTCTAAGAATTTCTTCATTT+TGG | + | chr2_4:26999724-26999743 | None:intergenic | 20.0% |
| !! | AAATTCTTAGAAAATCATGT+TGG | - | chr2_4:26999732-26999751 | Msa0323340:intron | 20.0% |
| !! | AAAAACCAGATATATTGTTA+TGG | - | chr2_4:26999908-26999927 | Msa0323340:intron | 20.0% |
| !!! | TTTTGTTTACCTTTCCAAAA+CGG | + | chr2_4:26996494-26996513 | None:intergenic | 25.0% |
| !!! | TGCTTTTTATTTGGTATCTT+AGG | - | chr2_4:26996741-26996760 | Msa0323340:intron | 25.0% |
| ! | TTCTACTGTTCAAACTTATT+AGG | + | chr2_4:26997003-26997022 | None:intergenic | 25.0% |
| ! | ATTTAACTGTGAATGTAACT+TGG | - | chr2_4:26997022-26997041 | Msa0323340:CDS | 25.0% |
| !!! | GAAACTACTAGTTGTTTTAT+TGG | + | chr2_4:26997049-26997068 | None:intergenic | 25.0% |
| !!! | GACATGAAACTTATTTTTCT+TGG | - | chr2_4:26997083-26997102 | Msa0323340:intron | 25.0% |
| !!! | TTTAGATCAAGTTTTATTGC+AGG | + | chr2_4:26997369-26997388 | None:intergenic | 25.0% |
| ! | ATGCTTCAATTGTAAAATGA+AGG | - | chr2_4:26997793-26997812 | Msa0323340:intron | 25.0% |
| ! | TCTTAGGTATAACAATAAAC+TGG | + | chr2_4:26998002-26998021 | None:intergenic | 25.0% |
| !! | ATGTAAGAGCATATTCAATA+AGG | - | chr2_4:26998035-26998054 | Msa0323340:intron | 25.0% |
| !! | TGTAAGAGCATATTCAATAA+GGG | - | chr2_4:26998036-26998055 | Msa0323340:intron | 25.0% |
| !! | TTCTTATATTTTCTACCCAA+TGG | - | chr2_4:26998095-26998114 | Msa0323340:CDS | 25.0% |
| ! | TTTCATACACTACTATCAAT+TGG | + | chr2_4:26998317-26998336 | None:intergenic | 25.0% |
| !!! | ACAAAATTTTAACAGTACCA+AGG | + | chr2_4:26998613-26998632 | None:intergenic | 25.0% |
| ! | ATTACATTAGAAACAAACAG+TGG | + | chr2_4:26998658-26998677 | None:intergenic | 25.0% |
| !! | TTTTCATCATAATCACACTA+TGG | - | chr2_4:26998681-26998700 | Msa0323340:CDS | 25.0% |
| ! | ATTACCATCCATATTAGTAT+AGG | + | chr2_4:26998887-26998906 | None:intergenic | 25.0% |
| ! | AAGCAGATTTAGAAGTAAAA+AGG | + | chr2_4:26999034-26999053 | None:intergenic | 25.0% |
| ! | CCCTAAAATATGTAAGTATA+AGG | + | chr2_4:26999065-26999084 | None:intergenic | 25.0% |
| ! | TCCTGAGAATTTAAAAAGTA+GGG | + | chr2_4:26999293-26999312 | None:intergenic | 25.0% |
| ! | TTCCTGAGAATTTAAAAAGT+AGG | + | chr2_4:26999294-26999313 | None:intergenic | 25.0% |
| ! | TAAATATATGGTTAGAAGCA+TGG | - | chr2_4:26999343-26999362 | Msa0323340:CDS | 25.0% |
| ! | AAAAACACTGCTATTCAAAA+GGG | + | chr2_4:26999407-26999426 | None:intergenic | 25.0% |
| ! | AAAAAACACTGCTATTCAAA+AGG | + | chr2_4:26999408-26999427 | None:intergenic | 25.0% |
| ! | ACTATAGTATAAATCCAAAG+CGG | + | chr2_4:26999508-26999527 | None:intergenic | 25.0% |
| ! | CACATGTTCTATTATGAAAA+AGG | + | chr2_4:26999562-26999581 | None:intergenic | 25.0% |
| ! | AATTGAGTTTCTAAATTTGC+AGG | - | chr2_4:26999622-26999641 | Msa0323340:CDS | 25.0% |
| ! | TAAAAGCTTGTGATGTTAAT+AGG | - | chr2_4:26999778-26999797 | Msa0323340:intron | 25.0% |
| ! | ATGATCCATAACAATATATC+TGG | + | chr2_4:26999916-26999935 | None:intergenic | 25.0% |
| !! | GTGATATTTCAGGTAAAATA+TGG | - | chr2_4:26999943-26999962 | Msa0323340:intron | 25.0% |
| ! | AAAAAGGAAAATAACTGTGA+AGG | + | chr2_4:27000002-27000021 | None:intergenic | 25.0% |
| ! | TAGAGAAAATAAGGACAAAA+AGG | + | chr2_4:27000018-27000037 | None:intergenic | 25.0% |
| ! | CATGAACAATAGAGAAAATA+AGG | + | chr2_4:27000027-27000046 | None:intergenic | 25.0% |
| ! | TCAAGTAATGAAACAAATGT+AGG | + | chr2_4:27000122-27000141 | None:intergenic | 25.0% |
| ! | TACTTGAATTAATCTGCTTA+AGG | - | chr2_4:27000135-27000154 | Msa0323340:intron | 25.0% |
| !!! | TTGAAAAGTATTGTGGAATA+TGG | + | chr2_4:27000336-27000355 | None:intergenic | 25.0% |
| !!! | TATGCAATTGAAAAGTATTG+TGG | + | chr2_4:27000343-27000362 | None:intergenic | 25.0% |
| ! | AATTATAATGGAACATGCTG+TGG | - | chr2_4:26996371-26996390 | Msa0323340:CDS | 30.0% |
| TTCTCTATACTGTGAATGTT+TGG | - | chr2_4:26996528-26996547 | Msa0323340:CDS | 30.0% | |
| AAAGTGAGAGACAGTTTATT+TGG | + | chr2_4:26996616-26996635 | None:intergenic | 30.0% | |
| CTCTCACTTTAGTATAAACT+TGG | - | chr2_4:26996626-26996645 | Msa0323340:intron | 30.0% | |
| CACTTTAGTATAAACTTGGA+AGG | - | chr2_4:26996630-26996649 | Msa0323340:intron | 30.0% | |
| AGGGATGTATAATTGTTCAA+AGG | + | chr2_4:26996658-26996677 | None:intergenic | 30.0% | |
| ! | TAGGAACATGTCATTACTTT+TGG | + | chr2_4:26996831-26996850 | None:intergenic | 30.0% |
| AAATAAAAGAATCAGGATGC+TGG | + | chr2_4:26996922-26996941 | None:intergenic | 30.0% | |
| !! | ATTTTAGCCTCTAGATTTGT+TGG | - | chr2_4:26996956-26996975 | Msa0323340:intron | 30.0% |
| GTAGTTTCTTAAATCTCATG+AGG | - | chr2_4:26997061-26997080 | Msa0323340:intron | 30.0% | |
| ! | TCTCTGGAGAAAATTAAAGA+AGG | - | chr2_4:26997154-26997173 | Msa0323340:intron | 30.0% |
| AGCTCAAAAACACAGAATTA+AGG | - | chr2_4:26997204-26997223 | Msa0323340:intron | 30.0% | |
| GATTATTGAATGTTCACACT+GGG | + | chr2_4:26997438-26997457 | None:intergenic | 30.0% | |
| TGATTATTGAATGTTCACAC+TGG | + | chr2_4:26997439-26997458 | None:intergenic | 30.0% | |
| TCTGATGGAAAACTGAAATA+AGG | + | chr2_4:26997470-26997489 | None:intergenic | 30.0% | |
| AGATGAAACTACTATTCCAA+AGG | - | chr2_4:26997725-26997744 | Msa0323340:CDS | 30.0% | |
| GATGAAACTACTATTCCAAA+GGG | - | chr2_4:26997726-26997745 | Msa0323340:intron | 30.0% | |
| !! | ATTAAATGCTGTTTCTTTGC+AGG | - | chr2_4:26997843-26997862 | Msa0323340:intron | 30.0% |
| !! | TTAAATGCTGTTTCTTTGCA+GGG | - | chr2_4:26997844-26997863 | Msa0323340:intron | 30.0% |
| GAACCATTTGTTTCATATGA+AGG | - | chr2_4:26997871-26997890 | Msa0323340:CDS | 30.0% | |
| AGACCTTCATATGAAACAAA+TGG | + | chr2_4:26997877-26997896 | None:intergenic | 30.0% | |
| ! | TTATATTTTCTACCCAATGG+AGG | - | chr2_4:26998098-26998117 | Msa0323340:CDS | 30.0% |
| GAAGTAGCTTAATTAAGCAA+TGG | - | chr2_4:26998158-26998177 | Msa0323340:intron | 30.0% | |
| ATAAGTATGATGTGACATTG+TGG | - | chr2_4:26998288-26998307 | Msa0323340:intron | 30.0% | |
| TGTGTTTGTAGATCTATAGT+TGG | - | chr2_4:26998491-26998510 | Msa0323340:intron | 30.0% | |
| !! | AATTTTAACAGTACCAAGGT+TGG | + | chr2_4:26998609-26998628 | None:intergenic | 30.0% |
| ! | AAAATTTTGTCAATGCCTGA+AGG | - | chr2_4:26998623-26998642 | Msa0323340:intron | 30.0% |
| ! | AAATTTTGTCAATGCCTGAA+GGG | - | chr2_4:26998624-26998643 | Msa0323340:intron | 30.0% |
| GAATCCTATACTAATATGGA+TGG | - | chr2_4:26998880-26998899 | Msa0323340:intron | 30.0% | |
| TGCTTGCAAAACAATAAGTA+AGG | + | chr2_4:26998938-26998957 | None:intergenic | 30.0% | |
| AGGAAGAAGAAATCAAAAGA+CGG | + | chr2_4:26999232-26999251 | None:intergenic | 30.0% | |
| !!! | TCCCTACTTTTTAAATTCTC+AGG | - | chr2_4:26999289-26999308 | Msa0323340:CDS | 30.0% |
| ATGAAAAAGGAAAGTTACCA+TGG | + | chr2_4:26999549-26999568 | None:intergenic | 30.0% | |
| CATACAGTTTGTGATATTTC+AGG | - | chr2_4:26999933-26999952 | Msa0323340:intron | 30.0% | |
| ACCATTACATGATCATCATT+CGG | - | chr2_4:27000235-27000254 | Msa0323340:intron | 30.0% | |
| TGTGAAACTATTACATTCAG+GGG | + | chr2_4:27000441-27000460 | None:intergenic | 30.0% | |
| CTGTGAAACTATTACATTCA+GGG | + | chr2_4:27000442-27000461 | None:intergenic | 30.0% | |
| ATTCAAAGACTCTAAGTCTA+AGG | + | chr2_4:27000827-27000846 | None:intergenic | 30.0% | |
| GATTGTTAGAAAAATTCAGC+TGG | + | chr2_4:27000873-27000892 | None:intergenic | 30.0% | |
| TACTCTATAGAATTCCTTCT+TGG | + | chr2_4:27001049-27001068 | None:intergenic | 30.0% | |
| ! | GATACTTCTCTTTTCCTTTC+TGG | - | chr2_4:26996251-26996270 | Msa0323340:CDS | 35.0% |
| !! | ACTTTTGACTCAAAGCAGAT+GGG | + | chr2_4:26996279-26996298 | None:intergenic | 35.0% |
| !!! | TTCTATCTACCGTTTTGGAA+AGG | - | chr2_4:26996482-26996501 | Msa0323340:CDS | 35.0% |
| CTATACTGTGAATGTTTGGT+TGG | - | chr2_4:26996532-26996551 | Msa0323340:CDS | 35.0% | |
| AGCAGATACATAGAGAACAT+AGG | + | chr2_4:26996850-26996869 | None:intergenic | 35.0% | |
| TATGTTCTCTATGTATCTGC+TGG | - | chr2_4:26996849-26996868 | Msa0323340:intron | 35.0% | |
| !! | TTCTGTGTTTTTGAGCTAGT+TGG | + | chr2_4:26997201-26997220 | None:intergenic | 35.0% |
| AACACAGAATTAAGGACACT+AGG | - | chr2_4:26997212-26997231 | Msa0323340:intron | 35.0% | |
| ACACAGAATTAAGGACACTA+GGG | - | chr2_4:26997213-26997232 | Msa0323340:intron | 35.0% | |
| ! | AAGTTAGCAGTGTCTAAGAT+TGG | - | chr2_4:26997331-26997350 | Msa0323340:CDS | 35.0% |
| ! | CAGTTTTCCATCAGAATCTT+TGG | - | chr2_4:26997475-26997494 | Msa0323340:intron | 35.0% |
| AAAGTTGCCAAAGATTCTGA+TGG | + | chr2_4:26997485-26997504 | None:intergenic | 35.0% | |
| GCATCAACTCTATATCAACA+AGG | + | chr2_4:26997548-26997567 | None:intergenic | 35.0% | |
| !! | ATATAGAGTTGATGCTGCTT+GGG | - | chr2_4:26997553-26997572 | Msa0323340:intron | 35.0% |
| ATCATGACATGCTCAATCAT+GGG | + | chr2_4:26997684-26997703 | None:intergenic | 35.0% | |
| AATCATGACATGCTCAATCA+TGG | + | chr2_4:26997685-26997704 | None:intergenic | 35.0% | |
| !!! | CACCGGTTTTTATTTGTTCT+CGG | - | chr2_4:26997907-26997926 | Msa0323340:CDS | 35.0% |
| !! | ACCGGTTTTTATTTGTTCTC+GGG | - | chr2_4:26997908-26997927 | Msa0323340:CDS | 35.0% |
| TCCCGAGAACAAATAAAAAC+CGG | + | chr2_4:26997912-26997931 | None:intergenic | 35.0% | |
| CATGAACATTGACCAATCTT+AGG | + | chr2_4:26998018-26998037 | None:intergenic | 35.0% | |
| ! | AGTACTTAGAGCATCTCTAA+TGG | + | chr2_4:26998366-26998385 | None:intergenic | 35.0% |
| CTGCTTACTTAACATAGGAA+AGG | + | chr2_4:26998450-26998469 | None:intergenic | 35.0% | |
| TTCCTATGTTAAGTAAGCAG+TGG | - | chr2_4:26998450-26998469 | Msa0323340:intron | 35.0% | |
| AACCACTGCTTACTTAACAT+AGG | + | chr2_4:26998455-26998474 | None:intergenic | 35.0% | |
| CTTATCGATGGAAATTTGCA+AGG | - | chr2_4:26998544-26998563 | Msa0323340:intron | 35.0% | |
| GTAAGAACAACAAAGTGATG+AGG | - | chr2_4:26998810-26998829 | Msa0323340:intron | 35.0% | |
| GCAGGAATCCTATACTAATA+TGG | - | chr2_4:26998876-26998895 | Msa0323340:intron | 35.0% | |
| ! | TATGTTTTCTGCGTCAGTTT+AGG | - | chr2_4:26999120-26999139 | Msa0323340:intron | 35.0% |
| TTACAGTGATGAAACCAAGA+CGG | + | chr2_4:26999178-26999197 | None:intergenic | 35.0% | |
| ! | ATATATGGTTAGAAGCATGG+AGG | - | chr2_4:26999346-26999365 | Msa0323340:CDS | 35.0% |
| ! | TTCATGGCATTCTAGGAATA+AGG | - | chr2_4:26999375-26999394 | Msa0323340:intron | 35.0% |
| CAGGTCTGAATATATACTTC+TGG | - | chr2_4:26999641-26999660 | Msa0323340:CDS | 35.0% | |
| ACATACAATTGCAGGGATAA+AGG | + | chr2_4:26999671-26999690 | None:intergenic | 35.0% | |
| TTTACTTGTGTTCTTGCACT+TGG | + | chr2_4:26999862-26999881 | None:intergenic | 35.0% | |
| TATGAATGAGGCCATTTCAA+AGG | + | chr2_4:27000057-27000076 | None:intergenic | 35.0% | |
| TTGAAATGGCCTCATTCATA+TGG | - | chr2_4:27000057-27000076 | Msa0323340:intron | 35.0% | |
| TACCAATGTCCATATGAATG+AGG | + | chr2_4:27000069-27000088 | None:intergenic | 35.0% | |
| TCTTGTATGTCTATGTCTAG+TGG | - | chr2_4:27000181-27000200 | Msa0323340:intron | 35.0% | |
| CTTGTATGTCTATGTCTAGT+GGG | - | chr2_4:27000182-27000201 | Msa0323340:intron | 35.0% | |
| TTGTATGTCTATGTCTAGTG+GGG | - | chr2_4:27000183-27000202 | Msa0323340:intron | 35.0% | |
| ACCGAATGATGATCATGTAA+TGG | + | chr2_4:27000239-27000258 | None:intergenic | 35.0% | |
| TCTCTCAAGAGTTCTTTGTT+AGG | - | chr2_4:27000293-27000312 | Msa0323340:intron | 35.0% | |
| CCTGTGAAACTATTACATTC+AGG | + | chr2_4:27000443-27000462 | None:intergenic | 35.0% | |
| CCTGAATGTAATAGTTTCAC+AGG | - | chr2_4:27000440-27000459 | Msa0323340:intron | 35.0% | |
| ! | TCACTCTTGTTTACTACAGA+TGG | - | chr2_4:27000603-27000622 | Msa0323340:intron | 35.0% |
| ! | CACTCTTGTTTACTACAGAT+GGG | - | chr2_4:27000604-27000623 | Msa0323340:intron | 35.0% |
| TTAGAGATTCCTTACACAGT+TGG | - | chr2_4:27000662-27000681 | Msa0323340:intron | 35.0% | |
| TAGTGCGAATTGATATGTAC+GGG | + | chr2_4:27000922-27000941 | None:intergenic | 35.0% | |
| GTAGTGCGAATTGATATGTA+CGG | + | chr2_4:27000923-27000942 | None:intergenic | 35.0% | |
| ! | GTTTAGTTGAAAGGTGCATG+TGG | + | chr2_4:26996191-26996210 | None:intergenic | 40.0% |
| !! | CACTTTTGACTCAAAGCAGA+TGG | + | chr2_4:26996280-26996299 | None:intergenic | 40.0% |
| ACCTACATATTCAGTTGCCT+CGG | - | chr2_4:26996419-26996438 | Msa0323340:CDS | 40.0% | |
| ! | ATGTTTGGTTGGTATCACGA+TGG | - | chr2_4:26996543-26996562 | Msa0323340:CDS | 40.0% |
| !! | CGATGGATTGGATAAAATCG+CGG | - | chr2_4:26996560-26996579 | Msa0323340:CDS | 40.0% |
| ! | TGACTAGCCAACAAATCTAG+AGG | + | chr2_4:26996966-26996985 | None:intergenic | 40.0% |
| AGTGGTTGAAGAAGACAAGA+AGG | - | chr2_4:26997116-26997135 | Msa0323340:intron | 40.0% | |
| GTTGAAGAAGACAAGAAGGA+AGG | - | chr2_4:26997120-26997139 | Msa0323340:intron | 40.0% | |
| !! | GTGTTTTTGAGCTAGTTGGT+AGG | + | chr2_4:26997197-26997216 | None:intergenic | 40.0% |
| TAAGGACACTAGGGTGATTA+TGG | - | chr2_4:26997222-26997241 | Msa0323340:intron | 40.0% | |
| CTCAAGCACATAAAGCATAG+TGG | + | chr2_4:26997250-26997269 | None:intergenic | 40.0% | |
| TGAGTGAAGATTAGAGAGTG+AGG | - | chr2_4:26997292-26997311 | Msa0323340:CDS | 40.0% | |
| !!! | GACACTGCTAACTTTTTCAG+TGG | + | chr2_4:26997325-26997344 | None:intergenic | 40.0% |
| !! | GATATAGAGTTGATGCTGCT+TGG | - | chr2_4:26997552-26997571 | Msa0323340:intron | 40.0% |
| ! | TGGGCTTATCTCTTTGTTGT+TGG | - | chr2_4:26997572-26997591 | Msa0323340:intron | 40.0% |
| ATTCCAAAGGGACTGTATAG+TGG | - | chr2_4:26997738-26997757 | Msa0323340:intron | 40.0% | |
| ATGTTACCTCTCCACATTGA+TGG | + | chr2_4:26997770-26997789 | None:intergenic | 40.0% | |
| !! | TGTTGGTTTAGCAATGAGCA+AGG | - | chr2_4:26997960-26997979 | Msa0323340:intron | 40.0% |
| !!! | GCAGTGGTTTAGTTTTTCTG+TGG | - | chr2_4:26998466-26998485 | Msa0323340:intron | 40.0% |
| ! | AGATCTATAGTTGGTGCAGA+TGG | - | chr2_4:26998500-26998519 | Msa0323340:intron | 40.0% |
| ! | GATCTATAGTTGGTGCAGAT+GGG | - | chr2_4:26998501-26998520 | Msa0323340:intron | 40.0% |
| ! | TTCATTGATGACACCAACCT+TGG | - | chr2_4:26998593-26998612 | Msa0323340:intron | 40.0% |
| ! | CAGTGGAAATTTTTCCCTTC+AGG | + | chr2_4:26998641-26998660 | None:intergenic | 40.0% |
| ACTAAGTTTGATCGGCTACA+TGG | + | chr2_4:26998718-26998737 | None:intergenic | 40.0% | |
| ATGTAGCCGATCAAACTTAG+TGG | - | chr2_4:26998717-26998736 | Msa0323340:CDS | 40.0% | |
| TGTAGCCGATCAAACTTAGT+GGG | - | chr2_4:26998718-26998737 | Msa0323340:CDS | 40.0% | |
| CCTATCCCACTAAGTTTGAT+CGG | + | chr2_4:26998726-26998745 | None:intergenic | 40.0% | |
| CGATCAAACTTAGTGGGATA+GGG | - | chr2_4:26998724-26998743 | Msa0323340:CDS | 40.0% | |
| AGAACAACAAAGTGATGAGG+CGG | - | chr2_4:26998813-26998832 | Msa0323340:intron | 40.0% | |
| GAAAACATAGCTGCAATGCA+AGG | + | chr2_4:26999109-26999128 | None:intergenic | 40.0% | |
| GACGAATTTCATGGCATTCT+AGG | - | chr2_4:26999368-26999387 | Msa0323340:intron | 40.0% | |
| TGCATCTTTGTGAACATCCA+TGG | - | chr2_4:26999529-26999548 | Msa0323340:CDS | 40.0% | |
| CCAGATTTCAAGCGCTAAAA+TGG | + | chr2_4:26999827-26999846 | None:intergenic | 40.0% | |
| !! | CCATTTTAGCGCTTGAAATC+TGG | - | chr2_4:26999824-26999843 | Msa0323340:intron | 40.0% |
| ! | CATGCAGAATGCCTTTGAAA+TGG | - | chr2_4:27000043-27000062 | Msa0323340:intron | 40.0% |
| ATCATCATTCGGTTGACATC+TGG | - | chr2_4:27000246-27000265 | Msa0323340:intron | 40.0% | |
| TCATCATTCGGTTGACATCT+GGG | - | chr2_4:27000247-27000266 | Msa0323340:intron | 40.0% | |
| TCTCTTACACCAACTGTGTA+AGG | + | chr2_4:27000674-27000693 | None:intergenic | 40.0% | |
| !! | CTCATCGATCGTTGATTCTA+GGG | + | chr2_4:27000758-27000777 | None:intergenic | 40.0% |
| !! | TCTCATCGATCGTTGATTCT+AGG | + | chr2_4:27000759-27000778 | None:intergenic | 40.0% |
| TAGAATCAACGATCGATGAG+AGG | - | chr2_4:27000758-27000777 | Msa0323340:CDS | 40.0% | |
| AGAATCAACGATCGATGAGA+GGG | - | chr2_4:27000759-27000778 | Msa0323340:CDS | 40.0% | |
| CGAATTGATATGTACGGGTT+CGG | + | chr2_4:27000917-27000936 | None:intergenic | 40.0% | |
| AGTTCTACTGCATACCAAGA+AGG | - | chr2_4:27001032-27001051 | Msa0323340:five_prime_UTR | 40.0% | |
| AAAGCAGATGGGATCCAGAA+AGG | + | chr2_4:26996268-26996287 | None:intergenic | 45.0% | |
| ACCGAGGCAACTGAATATGT+AGG | + | chr2_4:26996423-26996442 | None:intergenic | 45.0% | |
| CATGGTCTTTGTCTGCTTCT+TGG | - | chr2_4:26996452-26996471 | Msa0323340:CDS | 45.0% | |
| ! | GAGCGTTCTATCTACCGTTT+TGG | - | chr2_4:26996477-26996496 | Msa0323340:CDS | 45.0% |
| ! | TGGTTGGTATCACGATGGAT+TGG | - | chr2_4:26996548-26996567 | Msa0323340:CDS | 45.0% |
| ! | TGGATTGGATAAAATCGCGG+TGG | - | chr2_4:26996563-26996582 | Msa0323340:CDS | 45.0% |
| ! | TGCTACTTGGCATGAGAGAA+TGG | - | chr2_4:26996705-26996724 | Msa0323340:intron | 45.0% |
| TTTCTTGGCTATGCATGCAG+TGG | - | chr2_4:26997098-26997117 | Msa0323340:intron | 45.0% | |
| !!! | GAAGGCACTTTTTGCTTCTC+TGG | - | chr2_4:26997138-26997157 | Msa0323340:intron | 45.0% |
| TGACATGCTCAATCATGGGA+AGG | + | chr2_4:26997680-26997699 | None:intergenic | 45.0% | |
| CTGTATAGTTGTCTCGCTGT+TGG | - | chr2_4:26997943-26997962 | Msa0323340:intron | 45.0% | |
| ACACCTCAAGTTCCTCCATT+GGG | + | chr2_4:26998113-26998132 | None:intergenic | 45.0% | |
| TTGGTGCAGATGGGAAAATC+AGG | - | chr2_4:26998510-26998529 | Msa0323340:intron | 45.0% | |
| ATGGGAAAATCAGGCTACGA+TGG | - | chr2_4:26998519-26998538 | Msa0323340:intron | 45.0% | |
| CCGATCAAACTTAGTGGGAT+AGG | - | chr2_4:26998723-26998742 | Msa0323340:CDS | 45.0% | |
| AAACTTAGTGGGATAGGGCT+TGG | - | chr2_4:26998729-26998748 | Msa0323340:intron | 45.0% | |
| ! | AGACGCGTGATGGAAAACAA+AGG | + | chr2_4:26998846-26998865 | None:intergenic | 45.0% |
| AGTATAGGATTCCTGCTCCA+CGG | + | chr2_4:26998872-26998891 | None:intergenic | 45.0% | |
| AGCATGGAGGACGAATTTCA+TGG | - | chr2_4:26999359-26999378 | Msa0323340:CDS | 45.0% | |
| AACCAAAAAAGACCATCGCG+CGG | + | chr2_4:26999886-26999905 | None:intergenic | 45.0% | |
| GGCCTCATTCATATGGACAT+TGG | - | chr2_4:27000064-27000083 | Msa0323340:intron | 45.0% | |
| GAACAAGAACACTGCAATGC+AGG | + | chr2_4:27000392-27000411 | None:intergenic | 45.0% | |
| GCAGTGTTCTTGTTCAGTTC+TGG | - | chr2_4:27000397-27000416 | Msa0323340:intron | 45.0% | |
| GACGAGATAACAGTGGTATC+CGG | - | chr2_4:27000781-27000800 | Msa0323340:CDS | 45.0% | |
| CAACGATGTTGTCAACGTAG+AGG | - | chr2_4:27000942-27000961 | Msa0323340:five_prime_UTR | 45.0% | |
| !! | TTAATTATATATAATTAACT+TGG | - | chr2_4:26997516-26997535 | Msa0323340:intron | 5.0% |
| ! | TGAAAGGTGCATGTGGAGAG+AGG | + | chr2_4:26996184-26996203 | None:intergenic | 50.0% |
| ATGGAACATGCTGTGGAGCA+AGG | - | chr2_4:26996378-26996397 | Msa0323340:CDS | 50.0% | |
| TGCCTCGGTTGTTACTGTCA+TGG | - | chr2_4:26996434-26996453 | Msa0323340:CDS | 50.0% | |
| GACCATGACAGTAACAACCG+AGG | + | chr2_4:26996439-26996458 | None:intergenic | 50.0% | |
| TGGATAAAATCGCGGTGGCA+CGG | - | chr2_4:26996568-26996587 | Msa0323340:CDS | 50.0% | |
| TGTTGGCACAAAGCGCAAGA+TGG | - | chr2_4:26997589-26997608 | Msa0323340:intron | 50.0% | |
| GCACCACTATACAGTCCCTT+TGG | + | chr2_4:26997744-26997763 | None:intergenic | 50.0% | |
| AGTGGTGCACTCCATCAATG+TGG | - | chr2_4:26997756-26997775 | Msa0323340:intron | 50.0% | |
| TGCACTCCATCAATGTGGAG+AGG | - | chr2_4:26997761-26997780 | Msa0323340:intron | 50.0% | |
| CTACCCAATGGAGGAACTTG+AGG | - | chr2_4:26998107-26998126 | Msa0323340:CDS | 50.0% | |
| GACACCTCAAGTTCCTCCAT+TGG | + | chr2_4:26998114-26998133 | None:intergenic | 50.0% | |
| GCTACGATGGCTCTTATCGA+TGG | - | chr2_4:26998532-26998551 | Msa0323340:intron | 50.0% | |
| ACCTCCTTGAACTTTGCAGC+TGG | - | chr2_4:26999482-26999501 | Msa0323340:CDS | 50.0% | |
| CTTGAAATCTGGCAGCAGCA+GGG | - | chr2_4:26999835-26999854 | Msa0323340:intron | 50.0% | |
| GATGGGATCGCGATGTAAGA+AGG | - | chr2_4:27000621-27000640 | Msa0323340:intron | 50.0% | |
| TGAGAGGGACGAGATAACAG+TGG | - | chr2_4:27000774-27000793 | Msa0323340:CDS | 50.0% | |
| ! | AGTTGTTCGAGTTAGCGTGC+CGG | + | chr2_4:27000803-27000822 | None:intergenic | 50.0% |
| ATGTACGGGTTCGGACAGAT+CGG | + | chr2_4:27000908-27000927 | None:intergenic | 50.0% | |
| CGATGTTGTCAACGTAGAGG+AGG | - | chr2_4:27000945-27000964 | Msa0323340:five_prime_UTR | 50.0% | |
| ATAAAATCGCGGTGGCACGG+TGG | - | chr2_4:26996571-26996590 | Msa0323340:CDS | 55.0% | |
| !! | GGGAAGGTCTTGTTCAGCAC+AGG | + | chr2_4:26997664-26997683 | None:intergenic | 55.0% |
| AAGGTCTTGAGCAGCTGCAC+CGG | - | chr2_4:26997890-26997909 | Msa0323340:CDS | 55.0% | |
| GATTACCTCGCACTCCGTCT+TGG | - | chr2_4:26999161-26999180 | Msa0323340:intron | 55.0% | |
| TGAAACCAAGACGGAGTGCG+AGG | + | chr2_4:26999169-26999188 | None:intergenic | 55.0% | |
| GCCAGCTGCAAAGTTCAAGG+AGG | + | chr2_4:26999486-26999505 | None:intergenic | 55.0% | |
| AACTTTGCAGCTGGCCGCTT+TGG | - | chr2_4:26999491-26999510 | Msa0323340:CDS | 55.0% | |
| GCTTGAAATCTGGCAGCAGC+AGG | - | chr2_4:26999834-26999853 | Msa0323340:intron | 55.0% | |
| ACACAAGTAAAGCCGCGCGA+TGG | - | chr2_4:26999871-26999890 | Msa0323340:intron | 55.0% | |
| !!! | AGCCGCGCGATGGTCTTTTT+TGG | - | chr2_4:26999881-26999900 | Msa0323340:intron | 55.0% |
| TCCATCACGCGTCTCATCCG+TGG | - | chr2_4:26998852-26998871 | Msa0323340:intron | 60.0% | |
| TCCACGGATGAGACGCGTGA+TGG | + | chr2_4:26998856-26998875 | None:intergenic | 60.0% | |
| GCGGCCAGCTGCAAAGTTCA+AGG | + | chr2_4:26999489-26999508 | None:intergenic | 60.0% | |
| ACGCGTCTCATCCGTGGAGC+AGG | - | chr2_4:26998858-26998877 | Msa0323340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 26996131 | 27001114 | 26996131 | ID=Msa0323340;Name=Msa0323340 |
| chr2_4 | mRNA | 26996131 | 27001114 | 26996131 | ID=Msa0323340-mRNA-1;Parent=Msa0323340;Name=Msa0323340-mRNA-1;_AED=0.13;_eAED=0.13;_QI=247|0.92|0.92|1|1|1|14|106|521 |
| chr2_4 | exon | 26996131 | 26996623 | 26996131 | ID=Msa0323340-mRNA-1:exon:9506;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26996784 | 26996844 | 26996784 | ID=Msa0323340-mRNA-1:exon:9505;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26996977 | 26997044 | 26996977 | ID=Msa0323340-mRNA-1:exon:9504;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26997160 | 26997195 | 26997160 | ID=Msa0323340-mRNA-1:exon:9503;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26997291 | 26997412 | 26997291 | ID=Msa0323340-mRNA-1:exon:9502;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26997695 | 26997744 | 26997695 | ID=Msa0323340-mRNA-1:exon:9501;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26997849 | 26997934 | 26997849 | ID=Msa0323340-mRNA-1:exon:9500;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26998052 | 26998126 | 26998052 | ID=Msa0323340-mRNA-1:exon:9499;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26998344 | 26998435 | 26998344 | ID=Msa0323340-mRNA-1:exon:9498;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26998680 | 26998743 | 26998680 | ID=Msa0323340-mRNA-1:exon:9497;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26999264 | 26999380 | 26999264 | ID=Msa0323340-mRNA-1:exon:9496;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 26999463 | 26999686 | 26999463 | ID=Msa0323340-mRNA-1:exon:9495;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 27000070 | 27000127 | 27000070 | ID=Msa0323340-mRNA-1:exon:9494;Parent=Msa0323340-mRNA-1 |
| chr2_4 | exon | 27000742 | 27001114 | 27000742 | ID=Msa0323340-mRNA-1:exon:9493;Parent=Msa0323340-mRNA-1 |
| chr2_4 | five_prime_UTR | 27000868 | 27001114 | 27000868 | ID=Msa0323340-mRNA-1:five_prime_utr;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 27000742 | 27000867 | 27000742 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 27000070 | 27000127 | 27000070 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26999463 | 26999686 | 26999463 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26999264 | 26999380 | 26999264 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26998680 | 26998743 | 26998680 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26998344 | 26998435 | 26998344 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26998052 | 26998126 | 26998052 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26997849 | 26997934 | 26997849 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26997695 | 26997744 | 26997695 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26997291 | 26997412 | 26997291 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26997160 | 26997195 | 26997160 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26996977 | 26997044 | 26996977 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26996784 | 26996844 | 26996784 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | CDS | 26996237 | 26996623 | 26996237 | ID=Msa0323340-mRNA-1:cds;Parent=Msa0323340-mRNA-1 |
| chr2_4 | three_prime_UTR | 26996131 | 26996236 | 26996131 | ID=Msa0323340-mRNA-1:three_prime_utr;Parent=Msa0323340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
