Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203400 | XP_003595354.1 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 2.77e-178 | 500 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203400 | sp|Q9S7M2|TI10B_ARATH | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 3.11e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203400 | G7IIQ4 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 1.32e-178 | 500 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0203400 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101240 | Msa0203400 | 0.801468 | 8.878894e-49 | -8.615850e-47 |
| Msa0203400 | Msa0236660 | 0.813928 | 1.997098e-51 | -8.615850e-47 |
| Msa0203400 | Msa0246540 | 0.943358 | 1.388781e-102 | -8.615850e-47 |
| Msa0203400 | Msa0323880 | 0.935140 | 1.352673e-96 | -8.615850e-47 |
| Msa0203400 | Msa0689650 | 0.808081 | 3.689346e-50 | -8.615850e-47 |
| Msa0203400 | Msa0713910 | 0.803731 | 3.030379e-49 | -8.615850e-47 |
| Msa0203400 | Msa0756170 | 0.807054 | 6.096870e-50 | -8.615850e-47 |
| Msa0203400 | Msa0799620 | 0.834437 | 2.999255e-56 | -8.615850e-47 |
| Msa0203400 | Msa1174800 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa0203400 | Msa1268530 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0203400 | Msa1276810 | 0.836256 | 1.041000e-56 | -8.615850e-47 |
| Msa0203400 | Msa1314960 | 0.804197 | 2.424543e-49 | -8.615850e-47 |
| Msa0203400 | Msa1363020 | 0.842551 | 2.412997e-58 | -8.615850e-47 |
| Msa0203400 | Msa1382130 | 0.820705 | 5.957027e-53 | -8.615850e-47 |
| Msa0203400 | Msa1416010 | 0.824710 | 6.963656e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203400 | MtrunA17_Chr2g0301131 | 96.443 | 253 | 6 | 1 | 1 | 250 | 1 | 253 | 0.0 | 500 |
| Msa0203400 | MtrunA17_Chr4g0070271 | 44.961 | 258 | 77 | 10 | 1 | 248 | 1 | 203 | 1.53e-48 | 159 |
| Msa0203400 | MtrunA17_Chr5g0399851 | 45.513 | 156 | 47 | 6 | 99 | 242 | 10 | 139 | 5.37e-35 | 122 |
| Msa0203400 | MtrunA17_Chr5g0399881 | 44.512 | 164 | 43 | 5 | 96 | 242 | 25 | 157 | 1.09e-33 | 120 |
| Msa0203400 | MtrunA17_Chr5g0399861 | 42.162 | 185 | 58 | 7 | 76 | 242 | 3 | 156 | 1.84e-33 | 119 |
| Msa0203400 | MtrunA17_Chr8g0344481 | 32.018 | 228 | 121 | 6 | 12 | 233 | 11 | 210 | 1.00e-22 | 93.2 |
| Msa0203400 | MtrunA17_Chr4g0070241 | 55.882 | 68 | 24 | 3 | 69 | 136 | 1 | 62 | 3.22e-15 | 68.9 |
| Msa0203400 | MtrunA17_Chr2g0302041 | 32.031 | 128 | 62 | 5 | 109 | 230 | 58 | 166 | 1.56e-13 | 67.4 |
| Msa0203400 | MtrunA17_Chr1g0161031 | 30.460 | 174 | 67 | 4 | 107 | 237 | 172 | 334 | 6.16e-12 | 64.7 |
| Msa0203400 | MtrunA17_Chr4g0069721 | 29.771 | 131 | 69 | 4 | 105 | 230 | 41 | 153 | 5.12e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203400 | AT1G74950.1 | 37.143 | 280 | 101 | 9 | 2 | 242 | 3 | 246 | 3.17e-43 | 147 |
| Msa0203400 | AT1G19180.1 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.39e-41 | 141 |
| Msa0203400 | AT1G19180.3 | 37.037 | 270 | 119 | 8 | 1 | 242 | 1 | 247 | 5.39e-41 | 141 |
| Msa0203400 | AT1G74950.2 | 36.863 | 255 | 92 | 8 | 2 | 223 | 3 | 221 | 5.65e-37 | 130 |
| Msa0203400 | AT1G72450.1 | 32.328 | 232 | 121 | 9 | 17 | 234 | 4 | 213 | 3.23e-27 | 106 |
| Msa0203400 | AT1G17380.1 | 30.677 | 251 | 129 | 7 | 1 | 241 | 1 | 216 | 6.13e-25 | 100 |
| Msa0203400 | AT1G19180.2 | 39.041 | 146 | 59 | 4 | 106 | 242 | 57 | 181 | 1.94e-22 | 91.3 |
| Msa0203400 | AT1G72450.2 | 30.317 | 221 | 118 | 9 | 17 | 223 | 4 | 202 | 3.26e-22 | 91.3 |
| Msa0203400 | AT1G17380.3 | 29.954 | 217 | 114 | 6 | 17 | 223 | 10 | 198 | 1.84e-19 | 84.3 |
| Msa0203400 | AT1G17380.2 | 34.507 | 142 | 59 | 5 | 105 | 236 | 65 | 182 | 4.04e-14 | 70.1 |
| Msa0203400 | AT5G20900.1 | 31.746 | 126 | 63 | 3 | 109 | 230 | 57 | 163 | 5.89e-12 | 63.2 |
| Msa0203400 | AT3G17860.1 | 33.544 | 158 | 70 | 7 | 108 | 234 | 177 | 330 | 2.70e-11 | 63.2 |
| Msa0203400 | AT3G17860.3 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.85e-11 | 62.8 |
| Msa0203400 | AT3G17860.4 | 33.544 | 158 | 70 | 7 | 108 | 234 | 144 | 297 | 2.85e-11 | 62.8 |
| Msa0203400 | AT3G17860.2 | 33.544 | 158 | 70 | 7 | 108 | 234 | 164 | 317 | 4.33e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTTTGAAGTGTGTTTC+TGG | 0.099067 | 2_1:+27190608 | Msa0203400:three_prime_UTR |
| GTTAAGATGTAATATGTTAT+TGG | 0.217739 | 2_1:+27190339 | Msa0203400:three_prime_UTR |
| GATTCTTTGTGTTGTTGTTT+TGG | 0.231522 | 2_1:-27187989 | None:intergenic |
| TTTATTGAGTCAATATATTA+AGG | 0.231958 | 2_1:+27188179 | Msa0203400:CDS |
| AGCTTCGCTTCATCGGTTTC+TGG | 0.246045 | 2_1:+27189911 | Msa0203400:CDS |
| GCCTTCATTTCCTCCTAATT+TGG | 0.255924 | 2_1:+27189656 | Msa0203400:CDS |
| AGCGAAGCTTTCCTCATAAT+TGG | 0.256396 | 2_1:-27189897 | None:intergenic |
| GCTGGCTTATTAACTTGATA+TGG | 0.264533 | 2_1:-27190092 | None:intergenic |
| CATGAGCTCATGTGCTTTAT+CGG | 0.271727 | 2_1:-27189568 | None:intergenic |
| ACCGAAGTTCTGACCAAATT+AGG | 0.285058 | 2_1:-27189669 | None:intergenic |
| CTCTTGTTGAACCTGTTCAT+TGG | 0.310437 | 2_1:+27190582 | Msa0203400:three_prime_UTR |
| TCGGAATATTCAGAAGTTTC+CGG | 0.324209 | 2_1:+27188102 | Msa0203400:CDS |
| AGCCAAAGTATGACAAATAA+AGG | 0.324360 | 2_1:-27190374 | None:intergenic |
| ATTGTCAATTGTGCAGCTTT+AGG | 0.328266 | 2_1:-27189504 | None:intergenic |
| CTTCGCCGGTGGTTTGTTGC+CGG | 0.328284 | 2_1:-27188121 | None:intergenic |
| ACAAAAGAACCTTACAACTA+TGG | 0.341905 | 2_1:+27188896 | Msa0203400:CDS |
| CATGGTTGGAAACAAATTCA+TGG | 0.354972 | 2_1:-27188859 | None:intergenic |
| GCCCTTTATTTGTCATACTT+TGG | 0.360012 | 2_1:+27190372 | Msa0203400:three_prime_UTR |
| TTGTCATACTTTGGCTCCAA+TGG | 0.364404 | 2_1:+27190381 | Msa0203400:three_prime_UTR |
| GAGTCAATATATTAAGGAAA+AGG | 0.376605 | 2_1:+27188185 | Msa0203400:CDS |
| CCGGTGCCGGTGCCAGTACT+AGG | 0.379925 | 2_1:-27189732 | None:intergenic |
| TGCTTCAAAGATCTTTCTCT+TGG | 0.389248 | 2_1:+27188210 | Msa0203400:CDS |
| AAGAAATTACCGCAAAGATT+AGG | 0.403918 | 2_1:-27189789 | None:intergenic |
| AGTCAATATATTAAGGAAAA+GGG | 0.413916 | 2_1:+27188186 | Msa0203400:CDS |
| CATGAATTTGTTTCCAACCA+TGG | 0.434083 | 2_1:+27188860 | Msa0203400:CDS |
| TTGCAGATCTGCCAATTATG+AGG | 0.435886 | 2_1:+27189886 | Msa0203400:intron |
| TGTCATACTTTGGCTCCAAT+GGG | 0.437993 | 2_1:+27190382 | Msa0203400:three_prime_UTR |
| GTTCAAAAGTTGTTAATCGT+TGG | 0.438811 | 2_1:+27190557 | Msa0203400:three_prime_UTR |
| AATGATTTGCAGTGCTATCA+AGG | 0.444008 | 2_1:+27189479 | Msa0203400:intron |
| CCTTCCAGACCTAATCTTTG+CGG | 0.448657 | 2_1:+27189780 | Msa0203400:CDS |
| TTCATTAATCGAGCCGGTGC+CGG | 0.460250 | 2_1:-27189745 | None:intergenic |
| ATTACCGCAAAGATTAGGTC+TGG | 0.470927 | 2_1:-27189784 | None:intergenic |
| AGCTCATGTGCTTTATCGGC+AGG | 0.475762 | 2_1:-27189564 | None:intergenic |
| GCCAAAGTATGACAAATAAA+GGG | 0.482335 | 2_1:-27190373 | None:intergenic |
| GAGTCCATGTCATGGCTTGT+GGG | 0.483230 | 2_1:+27190116 | Msa0203400:CDS |
| AAAGTCTCAAGCCAATGAAC+AGG | 0.492608 | 2_1:-27190593 | None:intergenic |
| TCCTAATTTGGTCAGAACTT+CGG | 0.497883 | 2_1:+27189668 | Msa0203400:CDS |
| TGAGGAAAGCTTCGCTTCAT+CGG | 0.498790 | 2_1:+27189904 | Msa0203400:CDS |
| TAGGTCTGGAAGGCACTTGA+AGG | 0.506440 | 2_1:-27189770 | None:intergenic |
| ACATGCAACACAGACCCTTC+TGG | 0.507485 | 2_1:+27188237 | Msa0203400:CDS |
| TCGGTTTCTGGAGAAGAGAA+AGG | 0.512539 | 2_1:+27189923 | Msa0203400:CDS |
| CAAACCACCGGCGAAGTCAC+CGG | 0.513459 | 2_1:+27188128 | Msa0203400:CDS |
| ATAAGATGAATAAAATTCAA+TGG | 0.527658 | 2_1:-27190492 | None:intergenic |
| CGGTGCCGGTGCCAGTACTA+GGG | 0.531615 | 2_1:-27189731 | None:intergenic |
| CGATAAAGCACATGAGCTCA+TGG | 0.531706 | 2_1:+27189569 | Msa0203400:CDS |
| TGAGCAAATCCATAGTTGTA+AGG | 0.532508 | 2_1:-27188905 | None:intergenic |
| ATTAACTTGATATGGTGCAT+TGG | 0.537946 | 2_1:-27190084 | None:intergenic |
| TGAGTCCATGTCATGGCTTG+TGG | 0.539136 | 2_1:+27190115 | Msa0203400:CDS |
| GTGAACATCATCCCTAGTAC+TGG | 0.540119 | 2_1:+27189720 | Msa0203400:CDS |
| GAATTGTTCAAAGCAGCTTG+TGG | 0.542652 | 2_1:-27188930 | None:intergenic |
| CCTAGTACTGGCACCGGCAC+CGG | 0.542742 | 2_1:+27189732 | Msa0203400:CDS |
| TTCAATGGTACCAGTACCAA+TGG | 0.550482 | 2_1:-27190477 | None:intergenic |
| CAATGGGCCTTATCATACAT+AGG | 0.551563 | 2_1:+27190398 | Msa0203400:three_prime_UTR |
| ATGTTCACAGTAGGAACGAT+TGG | 0.560290 | 2_1:-27189705 | None:intergenic |
| TGCACCCACAAGCCATGACA+TGG | 0.562173 | 2_1:-27190120 | None:intergenic |
| ACCAAATTAGGAGGAAATGA+AGG | 0.565826 | 2_1:-27189657 | None:intergenic |
| TTCTCCGGTGACTTCGCCGG+TGG | 0.568647 | 2_1:-27188132 | None:intergenic |
| CTATGTATGATAAGGCCCAT+TGG | 0.571612 | 2_1:-27190397 | None:intergenic |
| AAGGTGTTCATTAATCGAGC+CGG | 0.572295 | 2_1:-27189751 | None:intergenic |
| AGCCATGACATGGACTCAGC+TGG | 0.572954 | 2_1:-27190110 | None:intergenic |
| AATTAGGAGGAAATGAAGGC+TGG | 0.580229 | 2_1:-27189653 | None:intergenic |
| TTGATAATGCTATCTAGTCA+AGG | 0.590291 | 2_1:-27190283 | None:intergenic |
| ATCATCCCTAGTACTGGCAC+CGG | 0.592342 | 2_1:+27189726 | Msa0203400:CDS |
| TCTAACTATGTCTACCTCAT+CGG | 0.594748 | 2_1:+27188083 | Msa0203400:exon |
| CCGCAAAGATTAGGTCTGGA+AGG | 0.596635 | 2_1:-27189780 | None:intergenic |
| ATTAAGGTTGCGTACCAGAA+GGG | 0.608421 | 2_1:-27188251 | None:intergenic |
| TTCTGGAGAAGAGAAAGGAT+AGG | 0.619484 | 2_1:+27189928 | Msa0203400:CDS |
| GAAGTTCTGACCAAATTAGG+AGG | 0.621959 | 2_1:-27189666 | None:intergenic |
| ATGATTTGCAGTGCTATCAA+GGG | 0.622638 | 2_1:+27189480 | Msa0203400:intron |
| AGTTTCCGGCAACAAACCAC+CGG | 0.625545 | 2_1:+27188116 | Msa0203400:CDS |
| CTAGGGATGATGTTCACAGT+AGG | 0.634680 | 2_1:-27189714 | None:intergenic |
| AGCCAGCTGAGTCCATGTCA+TGG | 0.640187 | 2_1:+27190108 | Msa0203400:CDS |
| CACAGTAGGAACGATTGGAG+CGG | 0.672313 | 2_1:-27189700 | None:intergenic |
| AACTTCTGAATATTCCGATG+AGG | 0.677602 | 2_1:-27188097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTATTTTTTAAAATT+TGG | + | chr2_1:27188340-27188359 | Msa0203400:intron | 0.0% |
| !! | TACAATTGAATAATTATAAA+AGG | - | chr2_1:27188543-27188562 | None:intergenic | 10.0% |
| !! | AAATAAAAAAATAAACAACA+TGG | - | chr2_1:27188594-27188613 | None:intergenic | 10.0% |
| !! | AGTTAAAAAAATAAATTTGA+TGG | + | chr2_1:27189160-27189179 | Msa0203400:intron | 10.0% |
| !! | AAAAATTAATAATCAACTAA+TGG | - | chr2_1:27189422-27189441 | None:intergenic | 10.0% |
| !! | TTTATTGAGTCAATATATTA+AGG | + | chr2_1:27188179-27188198 | Msa0203400:CDS | 15.0% |
| !!! | AATCTTTGAAATTTTTTTGT+GGG | + | chr2_1:27188313-27188332 | Msa0203400:intron | 15.0% |
| !!! | TTTAAAATTTGGTATCTTAA+TGG | + | chr2_1:27188351-27188370 | Msa0203400:intron | 15.0% |
| !!! | ATTTTTTTTCCTTTTTTGTA+AGG | + | chr2_1:27188487-27188506 | Msa0203400:intron | 15.0% |
| !!! | TAATTTATAGCTCTAATTAA+TGG | + | chr2_1:27188661-27188680 | Msa0203400:intron | 15.0% |
| !!! | ATTTTTTTACAAACCTAATT+TGG | - | chr2_1:27189006-27189025 | None:intergenic | 15.0% |
| !! | ATAAGATGAATAAAATTCAA+TGG | - | chr2_1:27190495-27190514 | None:intergenic | 15.0% |
| !! | AGTCAATATATTAAGGAAAA+GGG | + | chr2_1:27188186-27188205 | Msa0203400:CDS | 20.0% |
| !! | GAAACAAAAAACGAAAAATT+CGG | - | chr2_1:27188281-27188300 | None:intergenic | 20.0% |
| !!! | ATTTTTCGTTTTTTGTTTCT+TGG | + | chr2_1:27188282-27188301 | Msa0203400:intron | 20.0% |
| !!! | CAATCTTTGAAATTTTTTTG+TGG | + | chr2_1:27188312-27188331 | Msa0203400:intron | 20.0% |
| !!! | ATTGTTTTTATCTGCTAAAT+TGG | + | chr2_1:27188704-27188723 | Msa0203400:intron | 20.0% |
| !!! | AATTTGTTTTTTTTCTTTGC+AGG | + | chr2_1:27188804-27188823 | Msa0203400:intron | 20.0% |
| !!! | ATTTGTTTTTTTTCTTTGCA+GGG | + | chr2_1:27188805-27188824 | Msa0203400:intron | 20.0% |
| !! | ATTTCATTTCATACCAAATT+AGG | + | chr2_1:27188990-27189009 | Msa0203400:intron | 20.0% |
| !! | AAAAAATAAATTTGATGGAG+AGG | + | chr2_1:27189165-27189184 | Msa0203400:intron | 20.0% |
| !!! | CAATTGACAATGTTTTATAA+CGG | + | chr2_1:27189516-27189535 | Msa0203400:CDS | 20.0% |
| !! | AAACTTTGTCTAAAAAATTC+CGG | - | chr2_1:27190250-27190269 | None:intergenic | 20.0% |
| !!! | AATTTTTTAGACAAAGTTTC+TGG | + | chr2_1:27190251-27190270 | Msa0203400:three_prime_UTR | 20.0% |
| !! | GTTAAGATGTAATATGTTAT+TGG | + | chr2_1:27190339-27190358 | Msa0203400:three_prime_UTR | 20.0% |
| !!! | ATATGTTATTGGTTTTTTGT+TGG | + | chr2_1:27190350-27190369 | Msa0203400:three_prime_UTR | 20.0% |
| !! | TAAAAAACCTATGTATGATA+AGG | - | chr2_1:27190408-27190427 | None:intergenic | 20.0% |
| ! | GAGTCAATATATTAAGGAAA+AGG | + | chr2_1:27188185-27188204 | Msa0203400:CDS | 25.0% |
| ! | ATTATTCCTTTCTTCTTAGT+TGG | + | chr2_1:27188377-27188396 | Msa0203400:intron | 25.0% |
| ! | ATTCTAGTACTTAAGAGTAA+CGG | + | chr2_1:27188411-27188430 | Msa0203400:intron | 25.0% |
| !! | ATAGTTCTACCTTACAAAAA+AGG | - | chr2_1:27188499-27188518 | None:intergenic | 25.0% |
| ! | GTCTACAAAAATAAACAACA+TGG | - | chr2_1:27188622-27188641 | None:intergenic | 25.0% |
| ! | TTGATAAGATTGTAATCTTG+TGG | + | chr2_1:27188736-27188755 | Msa0203400:intron | 25.0% |
| ! | AATTTATGAGTGATGACAAA+TGG | + | chr2_1:27189027-27189046 | Msa0203400:intron | 25.0% |
| ! | AACCATTGACACATAAAATT+CGG | + | chr2_1:27189814-27189833 | Msa0203400:intron | 25.0% |
| !!! | TTAGTCAGATTTATTTTTGC+CGG | + | chr2_1:27190228-27190247 | Msa0203400:three_prime_UTR | 25.0% |
| !!! | TTTTTCTTGTTTAATGCACA+TGG | + | chr2_1:27190317-27190336 | Msa0203400:three_prime_UTR | 25.0% |
| !!! | GATTCTTTGTGTTGTTGTTT+TGG | - | chr2_1:27187992-27188011 | None:intergenic | 30.0% |
| CGAAAAATTCGGAGAAATTA+AGG | - | chr2_1:27188270-27188289 | None:intergenic | 30.0% | |
| TATGAACCAACTAAGAAGAA+AGG | - | chr2_1:27188386-27188405 | None:intergenic | 30.0% | |
| ! | TTGTGTCAAATTGTTTTCCA+TGG | - | chr2_1:27188880-27188899 | None:intergenic | 30.0% |
| ACAAAAGAACCTTACAACTA+TGG | + | chr2_1:27188896-27188915 | Msa0203400:CDS | 30.0% | |
| CAAAATGAAGAAAACTCACT+TGG | - | chr2_1:27188955-27188974 | None:intergenic | 30.0% | |
| !! | TTTTTAACTAGTTCCACCTA+GGG | - | chr2_1:27189149-27189168 | None:intergenic | 30.0% |
| !!! | TTTTTTAACTAGTTCCACCT+AGG | - | chr2_1:27189150-27189169 | None:intergenic | 30.0% |
| ATTTCACTCGCTAAATGTAA+CGG | + | chr2_1:27189261-27189280 | Msa0203400:intron | 30.0% | |
| TGCTATCAATCATTACTAAG+CGG | - | chr2_1:27189345-27189364 | None:intergenic | 30.0% | |
| AAGAAATTACCGCAAAGATT+AGG | - | chr2_1:27189792-27189811 | None:intergenic | 30.0% | |
| ! | ATCCGAATTTTATGTGTCAA+TGG | - | chr2_1:27189819-27189838 | None:intergenic | 30.0% |
| ! | ATTAACTTGATATGGTGCAT+TGG | - | chr2_1:27190087-27190106 | None:intergenic | 30.0% |
| !! | TTGATAATGCTATCTAGTCA+AGG | - | chr2_1:27190286-27190305 | None:intergenic | 30.0% |
| GCCAAAGTATGACAAATAAA+GGG | - | chr2_1:27190376-27190395 | None:intergenic | 30.0% | |
| AGCCAAAGTATGACAAATAA+AGG | - | chr2_1:27190377-27190396 | None:intergenic | 30.0% | |
| GTTCAAAAGTTGTTAATCGT+TGG | + | chr2_1:27190557-27190576 | Msa0203400:three_prime_UTR | 30.0% | |
| !!! | CTTTGTGTTGTTGTTTTGGA+TGG | - | chr2_1:27187988-27188007 | None:intergenic | 35.0% |
| TCTAACTATGTCTACCTCAT+CGG | + | chr2_1:27188083-27188102 | Msa0203400:exon | 35.0% | |
| AACTTCTGAATATTCCGATG+AGG | - | chr2_1:27188100-27188119 | None:intergenic | 35.0% | |
| TCGGAATATTCAGAAGTTTC+CGG | + | chr2_1:27188102-27188121 | Msa0203400:CDS | 35.0% | |
| !! | TGAGAGAAAGTTGTTTTCTC+CGG | - | chr2_1:27188150-27188169 | None:intergenic | 35.0% |
| TGCTTCAAAGATCTTTCTCT+TGG | + | chr2_1:27188210-27188229 | Msa0203400:CDS | 35.0% | |
| CATGGTTGGAAACAAATTCA+TGG | - | chr2_1:27188862-27188881 | None:intergenic | 35.0% | |
| ! | CATGAATTTGTTTCCAACCA+TGG | + | chr2_1:27188860-27188879 | Msa0203400:CDS | 35.0% |
| ! | GTCAAATTGTTTTCCATGGT+TGG | - | chr2_1:27188876-27188895 | None:intergenic | 35.0% |
| TGAGCAAATCCATAGTTGTA+AGG | - | chr2_1:27188908-27188927 | None:intergenic | 35.0% | |
| TAACCTCTACAATTGCAGTA+TGG | - | chr2_1:27189304-27189323 | None:intergenic | 35.0% | |
| ! | AATGATTTGCAGTGCTATCA+AGG | + | chr2_1:27189479-27189498 | Msa0203400:intron | 35.0% |
| ! | ATGATTTGCAGTGCTATCAA+GGG | + | chr2_1:27189480-27189499 | Msa0203400:intron | 35.0% |
| ATTGTCAATTGTGCAGCTTT+AGG | - | chr2_1:27189507-27189526 | None:intergenic | 35.0% | |
| ! | CTCATGGCTTTTGCTAATAA+AGG | + | chr2_1:27189585-27189604 | Msa0203400:CDS | 35.0% |
| ACCAAATTAGGAGGAAATGA+AGG | - | chr2_1:27189660-27189679 | None:intergenic | 35.0% | |
| TCCTAATTTGGTCAGAACTT+CGG | + | chr2_1:27189668-27189687 | Msa0203400:CDS | 35.0% | |
| ATTCGGATGACACGAAAAAT+TGG | + | chr2_1:27189831-27189850 | Msa0203400:intron | 35.0% | |
| ATTGGCAGATCTGCAAATAA+AGG | - | chr2_1:27189882-27189901 | None:intergenic | 35.0% | |
| ! | GCTGGCTTATTAACTTGATA+TGG | - | chr2_1:27190095-27190114 | None:intergenic | 35.0% |
| ! | GCCCTTTATTTGTCATACTT+TGG | + | chr2_1:27190372-27190391 | Msa0203400:three_prime_UTR | 35.0% |
| CAATGGCAAAAAATACAGAG+AGG | - | chr2_1:27190463-27190482 | None:intergenic | 35.0% | |
| !!! | CTCTCTGTATTTTTTGCCAT+TGG | + | chr2_1:27190461-27190480 | Msa0203400:three_prime_UTR | 35.0% |
| !!! | GTATTTTTTGCCATTGGTAC+TGG | + | chr2_1:27190467-27190486 | Msa0203400:three_prime_UTR | 35.0% |
| ATTAAGGTTGCGTACCAGAA+GGG | - | chr2_1:27188254-27188273 | None:intergenic | 40.0% | |
| AATTAAGGTTGCGTACCAGA+AGG | - | chr2_1:27188255-27188274 | None:intergenic | 40.0% | |
| GAATTGTTCAAAGCAGCTTG+TGG | - | chr2_1:27188933-27188952 | None:intergenic | 40.0% | |
| TTTCCACGAATTGACCCTTT+CGG | - | chr2_1:27189100-27189119 | None:intergenic | 40.0% | |
| ! | TTCGTGGAAATAACTTGCAG+AGG | + | chr2_1:27189110-27189129 | Msa0203400:intron | 40.0% |
| ACCTAGATCCTCTACAGATA+CGG | + | chr2_1:27189195-27189214 | Msa0203400:intron | 40.0% | |
| ATCAATCATTACTAAGCGGC+TGG | - | chr2_1:27189341-27189360 | None:intergenic | 40.0% | |
| CATGAGCTCATGTGCTTTAT+CGG | - | chr2_1:27189571-27189590 | None:intergenic | 40.0% | |
| AATTAGGAGGAAATGAAGGC+TGG | - | chr2_1:27189656-27189675 | None:intergenic | 40.0% | |
| GCCTTCATTTCCTCCTAATT+TGG | + | chr2_1:27189656-27189675 | Msa0203400:CDS | 40.0% | |
| ! | GAAGTTCTGACCAAATTAGG+AGG | - | chr2_1:27189669-27189688 | None:intergenic | 40.0% |
| ! | ACCGAAGTTCTGACCAAATT+AGG | - | chr2_1:27189672-27189691 | None:intergenic | 40.0% |
| ATGTTCACAGTAGGAACGAT+TGG | - | chr2_1:27189708-27189727 | None:intergenic | 40.0% | |
| ! | AAGGTGTTCATTAATCGAGC+CGG | - | chr2_1:27189754-27189773 | None:intergenic | 40.0% |
| ATTACCGCAAAGATTAGGTC+TGG | - | chr2_1:27189787-27189806 | None:intergenic | 40.0% | |
| TTGCAGATCTGCCAATTATG+AGG | + | chr2_1:27189886-27189905 | Msa0203400:intron | 40.0% | |
| AGCGAAGCTTTCCTCATAAT+TGG | - | chr2_1:27189900-27189919 | None:intergenic | 40.0% | |
| ! | TTCTGGAGAAGAGAAAGGAT+AGG | + | chr2_1:27189928-27189947 | Msa0203400:CDS | 40.0% |
| ! | TTGTCATACTTTGGCTCCAA+TGG | + | chr2_1:27190381-27190400 | Msa0203400:three_prime_UTR | 40.0% |
| ! | TGTCATACTTTGGCTCCAAT+GGG | + | chr2_1:27190382-27190401 | Msa0203400:three_prime_UTR | 40.0% |
| CTATGTATGATAAGGCCCAT+TGG | - | chr2_1:27190400-27190419 | None:intergenic | 40.0% | |
| ! | CAATGGGCCTTATCATACAT+AGG | + | chr2_1:27190398-27190417 | Msa0203400:three_prime_UTR | 40.0% |
| TTCAATGGTACCAGTACCAA+TGG | - | chr2_1:27190480-27190499 | None:intergenic | 40.0% | |
| CTCTTGTTGAACCTGTTCAT+TGG | + | chr2_1:27190582-27190601 | Msa0203400:three_prime_UTR | 40.0% | |
| AAAGTCTCAAGCCAATGAAC+AGG | - | chr2_1:27190596-27190615 | None:intergenic | 40.0% | |
| !! | GAGACTTTGAAGTGTGTTTC+TGG | + | chr2_1:27190608-27190627 | Msa0203400:three_prime_UTR | 40.0% |
| AGGATTTAGATCCTCTCCCT+AGG | + | chr2_1:27189130-27189149 | Msa0203400:intron | 45.0% | |
| ATTTAGATCCTCTCCCTAGG+TGG | + | chr2_1:27189133-27189152 | Msa0203400:intron | 45.0% | |
| TCTGTAGAGGATCTAGGTGT+GGG | - | chr2_1:27189193-27189212 | None:intergenic | 45.0% | |
| ATCTGTAGAGGATCTAGGTG+TGG | - | chr2_1:27189194-27189213 | None:intergenic | 45.0% | |
| ACCGTATCTGTAGAGGATCT+AGG | - | chr2_1:27189199-27189218 | None:intergenic | 45.0% | |
| GATCCTCTACAGATACGGTA+TGG | + | chr2_1:27189200-27189219 | Msa0203400:intron | 45.0% | |
| GCACCATACTGCAATTGTAG+AGG | + | chr2_1:27189298-27189317 | Msa0203400:intron | 45.0% | |
| CGATAAAGCACATGAGCTCA+TGG | + | chr2_1:27189569-27189588 | Msa0203400:CDS | 45.0% | |
| CTAGGGATGATGTTCACAGT+AGG | - | chr2_1:27189717-27189736 | None:intergenic | 45.0% | |
| GTGAACATCATCCCTAGTAC+TGG | + | chr2_1:27189720-27189739 | Msa0203400:CDS | 45.0% | |
| CCTTCCAGACCTAATCTTTG+CGG | + | chr2_1:27189780-27189799 | Msa0203400:CDS | 45.0% | |
| TGAGGAAAGCTTCGCTTCAT+CGG | + | chr2_1:27189904-27189923 | Msa0203400:CDS | 45.0% | |
| ! | TCGGTTTCTGGAGAAGAGAA+AGG | + | chr2_1:27189923-27189942 | Msa0203400:CDS | 45.0% |
| GGAGAAGAGAAAGGATAGGT+AGG | + | chr2_1:27189932-27189951 | Msa0203400:intron | 45.0% | |
| AGTTTCCGGCAACAAACCAC+CGG | + | chr2_1:27188116-27188135 | Msa0203400:CDS | 50.0% | |
| ACATGCAACACAGACCCTTC+TGG | + | chr2_1:27188237-27188256 | Msa0203400:CDS | 50.0% | |
| ACGAATTGACCCTTTCGGCA+AGG | - | chr2_1:27189095-27189114 | None:intergenic | 50.0% | |
| TTGCCGAAAGGGTCAATTCG+TGG | + | chr2_1:27189094-27189113 | Msa0203400:intron | 50.0% | |
| AACTAGTTCCACCTAGGGAG+AGG | - | chr2_1:27189144-27189163 | None:intergenic | 50.0% | |
| GCACCATACCGTATCTGTAG+AGG | - | chr2_1:27189206-27189225 | None:intergenic | 50.0% | |
| ! | TCATTACTAAGCGGCTGGCT+CGG | - | chr2_1:27189336-27189355 | None:intergenic | 50.0% |
| AGCTCATGTGCTTTATCGGC+AGG | - | chr2_1:27189567-27189586 | None:intergenic | 50.0% | |
| CACAGTAGGAACGATTGGAG+CGG | - | chr2_1:27189703-27189722 | None:intergenic | 50.0% | |
| !! | ATCATCCCTAGTACTGGCAC+CGG | + | chr2_1:27189726-27189745 | Msa0203400:CDS | 50.0% |
| TTCATTAATCGAGCCGGTGC+CGG | - | chr2_1:27189748-27189767 | None:intergenic | 50.0% | |
| !! | TAGGTCTGGAAGGCACTTGA+AGG | - | chr2_1:27189773-27189792 | None:intergenic | 50.0% |
| CCGCAAAGATTAGGTCTGGA+AGG | - | chr2_1:27189783-27189802 | None:intergenic | 50.0% | |
| !! | AGCTTCGCTTCATCGGTTTC+TGG | + | chr2_1:27189911-27189930 | Msa0203400:CDS | 50.0% |
| TGAGTCCATGTCATGGCTTG+TGG | + | chr2_1:27190115-27190134 | Msa0203400:CDS | 50.0% | |
| ! | GAGTCCATGTCATGGCTTGT+GGG | + | chr2_1:27190116-27190135 | Msa0203400:CDS | 50.0% |
| ! | GTTTTCTCCGGTGACTTCGC+CGG | - | chr2_1:27188138-27188157 | None:intergenic | 55.0% |
| TATCGTCACGCTAGCCGCTA+AGG | - | chr2_1:27189063-27189082 | None:intergenic | 55.0% | |
| ATAGCTGTCGCCTTGCCGAA+AGG | + | chr2_1:27189082-27189101 | Msa0203400:intron | 55.0% | |
| TAGCTGTCGCCTTGCCGAAA+GGG | + | chr2_1:27189083-27189102 | Msa0203400:intron | 55.0% | |
| AGCCAGCTGAGTCCATGTCA+TGG | + | chr2_1:27190108-27190127 | Msa0203400:CDS | 55.0% | |
| AGCCATGACATGGACTCAGC+TGG | - | chr2_1:27190113-27190132 | None:intergenic | 55.0% | |
| TGCACCCACAAGCCATGACA+TGG | - | chr2_1:27190123-27190142 | None:intergenic | 55.0% | |
| !! | CTTCGCCGGTGGTTTGTTGC+CGG | - | chr2_1:27188124-27188143 | None:intergenic | 60.0% |
| CAAACCACCGGCGAAGTCAC+CGG | + | chr2_1:27188128-27188147 | Msa0203400:CDS | 60.0% | |
| ATGGCGAGTGCGAGCCTTAG+CGG | + | chr2_1:27189046-27189065 | Msa0203400:intron | 60.0% | |
| TTCTCCGGTGACTTCGCCGG+TGG | - | chr2_1:27188135-27188154 | None:intergenic | 65.0% | |
| !! | CGGTGCCGGTGCCAGTACTA+GGG | - | chr2_1:27189734-27189753 | None:intergenic | 65.0% |
| !! | CCTAGTACTGGCACCGGCAC+CGG | + | chr2_1:27189732-27189751 | Msa0203400:CDS | 65.0% |
| !! | CCGGTGCCGGTGCCAGTACT+AGG | - | chr2_1:27189735-27189754 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 27187968 | 27190631 | 27187968 | ID=Msa0203400;Name=Msa0203400 |
| chr2_1 | mRNA | 27187968 | 27190631 | 27187968 | ID=Msa0203400-mRNA-1;Parent=Msa0203400;Name=Msa0203400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=122|1|1|1|1|1|5|471|250 |
| chr2_1 | exon | 27187968 | 27188258 | 27187968 | ID=Msa0203400-mRNA-1:exon:10088;Parent=Msa0203400-mRNA-1 |
| chr2_1 | exon | 27188826 | 27188955 | 27188826 | ID=Msa0203400-mRNA-1:exon:10089;Parent=Msa0203400-mRNA-1 |
| chr2_1 | exon | 27189491 | 27189801 | 27189491 | ID=Msa0203400-mRNA-1:exon:10090;Parent=Msa0203400-mRNA-1 |
| chr2_1 | exon | 27189892 | 27189949 | 27189892 | ID=Msa0203400-mRNA-1:exon:10091;Parent=Msa0203400-mRNA-1 |
| chr2_1 | exon | 27190076 | 27190631 | 27190076 | ID=Msa0203400-mRNA-1:exon:10092;Parent=Msa0203400-mRNA-1 |
| chr2_1 | five_prime_UTR | 27187968 | 27188089 | 27187968 | ID=Msa0203400-mRNA-1:five_prime_utr;Parent=Msa0203400-mRNA-1 |
| chr2_1 | CDS | 27188090 | 27188258 | 27188090 | ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1 |
| chr2_1 | CDS | 27188826 | 27188955 | 27188826 | ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1 |
| chr2_1 | CDS | 27189491 | 27189801 | 27189491 | ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1 |
| chr2_1 | CDS | 27189892 | 27189949 | 27189892 | ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1 |
| chr2_1 | CDS | 27190076 | 27190160 | 27190076 | ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1 |
| chr2_1 | three_prime_UTR | 27190161 | 27190631 | 27190161 | ID=Msa0203400-mRNA-1:three_prime_utr;Parent=Msa0203400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
