AlfalfaGEDB | Msa0203400

M. sativa cultivar zhongmu-4 / Msa0203400

KEGG: K13464
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0022414 GO:0023051 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0080134 GO:0090567 GO:0098542 GO:0140110 GO:1900067 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0203400	XP_003595354.1	96.443	253	6	1	1	250	1	253	2.77e-178	500

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0203400	sp\|Q9S7M2\|TI10B_ARATH	37.143	280	101	9	2	242	3	246	3.11e-42	147

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0203400	G7IIQ4	96.443	253	6	1	1	250	1	253	1.32e-178	500

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0203400	TF	Tify

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101240	Msa0203400	0.801468	8.878894e-49	-8.615850e-47
Msa0203400	Msa0236660	0.813928	1.997098e-51	-8.615850e-47
Msa0203400	Msa0246540	0.943358	1.388781e-102	-8.615850e-47
Msa0203400	Msa0323880	0.935140	1.352673e-96	-8.615850e-47
Msa0203400	Msa0689650	0.808081	3.689346e-50	-8.615850e-47
Msa0203400	Msa0713910	0.803731	3.030379e-49	-8.615850e-47
Msa0203400	Msa0756170	0.807054	6.096870e-50	-8.615850e-47
Msa0203400	Msa0799620	0.834437	2.999255e-56	-8.615850e-47
Msa0203400	Msa1174800	0.816250	6.091471e-52	-8.615850e-47
Msa0203400	Msa1268530	0.803579	3.259257e-49	-8.615850e-47

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0203400	MtrunA17_Chr2g0301131	96.443	253	6	1	1	250	1	253	0.0	500
Msa0203400	MtrunA17_Chr4g0070271	44.961	258	77	10	1	248	1	203	1.53e-48	159
Msa0203400	MtrunA17_Chr5g0399851	45.513	156	47	6	99	242	10	139	5.37e-35	122
Msa0203400	MtrunA17_Chr5g0399881	44.512	164	43	5	96	242	25	157	1.09e-33	120
Msa0203400	MtrunA17_Chr5g0399861	42.162	185	58	7	76	242	3	156	1.84e-33	119
Msa0203400	MtrunA17_Chr8g0344481	32.018	228	121	6	12	233	11	210	1.00e-22	93.2
Msa0203400	MtrunA17_Chr4g0070241	55.882	68	24	3	69	136	1	62	3.22e-15	68.9
Msa0203400	MtrunA17_Chr2g0302041	32.031	128	62	5	109	230	58	166	1.56e-13	67.4
Msa0203400	MtrunA17_Chr1g0161031	30.460	174	67	4	107	237	172	334	6.16e-12	64.7
Msa0203400	MtrunA17_Chr4g0069721	29.771	131	69	4	105	230	41	153	5.12e-11	60.1

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0203400	AT1G74950.1	37.143	280	101	9	2	242	3	246	3.17e-43	147
Msa0203400	AT1G19180.1	37.037	270	119	8	1	242	1	247	5.39e-41	141
Msa0203400	AT1G19180.3	37.037	270	119	8	1	242	1	247	5.39e-41	141
Msa0203400	AT1G74950.2	36.863	255	92	8	2	223	3	221	5.65e-37	130
Msa0203400	AT1G72450.1	32.328	232	121	9	17	234	4	213	3.23e-27	106
Msa0203400	AT1G17380.1	30.677	251	129	7	1	241	1	216	6.13e-25	100
Msa0203400	AT1G19180.2	39.041	146	59	4	106	242	57	181	1.94e-22	91.3
Msa0203400	AT1G72450.2	30.317	221	118	9	17	223	4	202	3.26e-22	91.3
Msa0203400	AT1G17380.3	29.954	217	114	6	17	223	10	198	1.84e-19	84.3
Msa0203400	AT1G17380.2	34.507	142	59	5	105	236	65	182	4.04e-14	70.1

Showing 1 to 10 of 15 entries

Previous1 2Next

Find 74 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTCAAGCCAATGAAC+AGG	0.492608	2_1:-27190593	None:intergenic
AACTTCTGAATATTCCGATG+AGG	0.677602	2_1:-27188097	None:intergenic
AAGAAATTACCGCAAAGATT+AGG	0.403918	2_1:-27189789	None:intergenic
AAGGTGTTCATTAATCGAGC+CGG	0.572295	2_1:-27189751	None:intergenic
AATGATTTGCAGTGCTATCA+AGG	0.444008	2_1:+27189479	Msa0203400:intron
AATTAGGAGGAAATGAAGGC+TGG	0.580229	2_1:-27189653	None:intergenic
ACAAAAGAACCTTACAACTA+TGG	0.341905	2_1:+27188896	Msa0203400:CDS
ACATGCAACACAGACCCTTC+TGG	0.507485	2_1:+27188237	Msa0203400:CDS
ACCAAATTAGGAGGAAATGA+AGG	0.565826	2_1:-27189657	None:intergenic
ACCGAAGTTCTGACCAAATT+AGG	0.285058	2_1:-27189669	None:intergenic

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CGAAAAATTCGGAGAAATTA+AGG	-	chr2_1:27188270-27188289	None:intergenic	30.0%
TATGAACCAACTAAGAAGAA+AGG	-	chr2_1:27188386-27188405	None:intergenic	30.0%
ACAAAAGAACCTTACAACTA+TGG	+	chr2_1:27188896-27188915	Msa0203400:CDS	30.0%
CAAAATGAAGAAAACTCACT+TGG	-	chr2_1:27188955-27188974	None:intergenic	30.0%
ATTTCACTCGCTAAATGTAA+CGG	+	chr2_1:27189261-27189280	Msa0203400:intron	30.0%
TGCTATCAATCATTACTAAG+CGG	-	chr2_1:27189345-27189364	None:intergenic	30.0%
AAGAAATTACCGCAAAGATT+AGG	-	chr2_1:27189792-27189811	None:intergenic	30.0%
GCCAAAGTATGACAAATAAA+GGG	-	chr2_1:27190376-27190395	None:intergenic	30.0%
AGCCAAAGTATGACAAATAA+AGG	-	chr2_1:27190377-27190396	None:intergenic	30.0%
GTTCAAAAGTTGTTAATCGT+TGG	+	chr2_1:27190557-27190576	Msa0203400:three_prime_UTR	30.0%

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	27187968	27190631	27187968	ID=Msa0203400;Name=Msa0203400
chr2_1	mRNA	27187968	27190631	27187968	ID=Msa0203400-mRNA-1;Parent=Msa0203400;Name=Msa0203400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=122\|1\|1\|1\|1\|1\|5\|471\|250
chr2_1	exon	27187968	27188258	27187968	ID=Msa0203400-mRNA-1:exon:10088;Parent=Msa0203400-mRNA-1
chr2_1	exon	27188826	27188955	27188826	ID=Msa0203400-mRNA-1:exon:10089;Parent=Msa0203400-mRNA-1
chr2_1	exon	27189491	27189801	27189491	ID=Msa0203400-mRNA-1:exon:10090;Parent=Msa0203400-mRNA-1
chr2_1	exon	27189892	27189949	27189892	ID=Msa0203400-mRNA-1:exon:10091;Parent=Msa0203400-mRNA-1
chr2_1	exon	27190076	27190631	27190076	ID=Msa0203400-mRNA-1:exon:10092;Parent=Msa0203400-mRNA-1
chr2_1	five_prime_UTR	27187968	27188089	27187968	ID=Msa0203400-mRNA-1:five_prime_utr;Parent=Msa0203400-mRNA-1
chr2_1	CDS	27188090	27188258	27188090	ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1
chr2_1	CDS	27188826	27188955	27188826	ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1
chr2_1	CDS	27189491	27189801	27189491	ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1
chr2_1	CDS	27189892	27189949	27189892	ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1
chr2_1	CDS	27190076	27190160	27190076	ID=Msa0203400-mRNA-1:cds;Parent=Msa0203400-mRNA-1
chr2_1	three_prime_UTR	27190161	27190631	27190161	ID=Msa0203400-mRNA-1:three_prime_utr;Parent=Msa0203400-mRNA-1

Gene Sequence

>Msa0203400

ATGTCTACCTCATCGGAATATTCAGAAGTTTCCGGCAACAAACCACCGGCGAAGTCACCGGAGAAAACAACTTTCTCTCAAACATGTAGTTTATTGAGTCAATATATTAAGGAAAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATCACATGCAACACAGACCCTTCTGGGTCTTCTGAGACTTCTTCTCAATCTGCAACAACCATGAATTTGTTTCCAACCATGGAAAACAATTTGACACAAAAGAACCTTACAACTATGGATTTGCTCACTCCACAAGCTGCTTTGAACAATTCCAATGCTATCAAGGGACCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTTATTGTATTCGATGATTTTCCTGCCGATAAAGCACATGAGCTCATGGCTTTTGCTAATAAAGGAATCTCTCAAAGTCAGAACAATTCTGTGTACACTTACACACAGAGCCAGCCTTCATTTCCTCCTAATTTGGTCAGAACTTCGGTTAACACAACCGCTCCAATCGTTCCTACTGTGAACATCATCCCTAGTACTGGCACCGGCACCGGCTCGATTAATGAACACCTTCAAGTGCCTTCCAGACCTAATCTTTGCGATCTGCCAATTATGAGGAAAGCTTCGCTTCATCGGTTTCTGGAGAAGAGAAAGGATAGAATTGCTGCCAATGCACCATATCAAGTTAATAAGCCAGCTGAGTCCATGTCATGGCTTGTGGGTGCAAAATCAACTCAAATTTGA

Protein sequence

>Msa0203400

MSTSSEYSEVSGNKPPAKSPEKTTFSQTCSLLSQYIKEKGCFKDLSLGITCNTDPSGSSETSSQSATTMNLFPTMENNLTQKNLTTMDLLTPQAALNNSNAIKGPKAAQLTMFYNGQVIVFDDFPADKAHELMAFANKGISQSQNNSVYTYTQSQPSFPPNLVRTSVNTTAPIVPTVNIIPSTGTGTGSINEHLQVPSRPNLCDLPIMRKASLHRFLEKRKDRIAANAPYQVNKPAESMSWLVGAKSTQI*