Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275520 | XP_013462737.1 | 97.605 | 167 | 4 | 0 | 6 | 172 | 1 | 167 | 1.20e-115 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275520 | sp|Q9M8K6|MUTE_ARATH | 66.474 | 173 | 51 | 2 | 6 | 171 | 1 | 173 | 1.84e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0275520 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0219190 | Msa0275520 | 0.829711 | 4.417414e-55 | -8.615850e-47 |
| Msa0238100 | Msa0275520 | 0.810286 | 1.242990e-50 | -8.615850e-47 |
| Msa0275520 | Msa0298240 | 0.831444 | 1.663233e-55 | -8.615850e-47 |
| Msa0275520 | Msa0315990 | 0.910849 | 1.181001e-82 | -8.615850e-47 |
| Msa0275520 | Msa0351770 | 0.821953 | 3.069303e-53 | -8.615850e-47 |
| Msa0275520 | Msa0685330 | 0.811566 | 6.567154e-51 | -8.615850e-47 |
| Msa0275520 | Msa0688500 | 0.807214 | 5.638940e-50 | -8.615850e-47 |
| Msa0275520 | Msa0867350 | 0.808355 | 3.225352e-50 | -8.615850e-47 |
| Msa0275520 | Msa0885060 | 0.804675 | 1.928027e-49 | -8.615850e-47 |
| Msa0275520 | Msa1081570 | 0.808585 | 2.881535e-50 | -8.615850e-47 |
| Msa0275520 | Msa1127140 | 0.803200 | 3.904292e-49 | -8.615850e-47 |
| Msa0275520 | Msa1129960 | 0.802095 | 6.599534e-49 | -8.615850e-47 |
| Msa0275520 | Msa1130010 | 0.829505 | 4.957149e-55 | -8.615850e-47 |
| Msa0275520 | Msa1145020 | 0.812415 | 4.289706e-51 | -8.615850e-47 |
| Msa0275520 | Msa1420060 | 0.846891 | 1.633457e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275520 | MtrunA17_Chr2g0287761 | 97.605 | 167 | 4 | 0 | 6 | 172 | 1 | 167 | 1.11e-119 | 336 |
| Msa0275520 | MtrunA17_Chr1g0158941 | 47.059 | 187 | 78 | 2 | 6 | 171 | 87 | 273 | 3.61e-50 | 163 |
| Msa0275520 | MtrunA17_Chr0c01g0489461 | 47.253 | 182 | 86 | 2 | 6 | 177 | 195 | 376 | 3.01e-47 | 158 |
| Msa0275520 | MtrunA17_Chr3g0132471 | 37.989 | 179 | 95 | 4 | 6 | 172 | 116 | 290 | 4.79e-34 | 122 |
| Msa0275520 | MtrunA17_Chr1g0191571 | 40.462 | 173 | 97 | 2 | 6 | 172 | 136 | 308 | 1.06e-33 | 122 |
| Msa0275520 | MtrunA17_Chr7g0273081 | 40.000 | 170 | 98 | 2 | 6 | 172 | 116 | 284 | 5.29e-33 | 119 |
| Msa0275520 | MtrunA17_Chr8g0366551 | 37.278 | 169 | 103 | 2 | 6 | 172 | 124 | 291 | 8.50e-33 | 119 |
| Msa0275520 | MtrunA17_Chr3g0126381 | 41.111 | 180 | 63 | 5 | 35 | 171 | 1 | 180 | 1.10e-32 | 115 |
| Msa0275520 | MtrunA17_Chr8g0345871 | 43.452 | 168 | 87 | 1 | 6 | 173 | 181 | 340 | 3.24e-31 | 115 |
| Msa0275520 | MtrunA17_Chr5g0426851 | 36.842 | 171 | 104 | 2 | 6 | 172 | 100 | 270 | 9.00e-31 | 113 |
| Msa0275520 | MtrunA17_Chr8g0346161 | 28.994 | 169 | 108 | 3 | 3 | 171 | 287 | 443 | 2.61e-18 | 81.3 |
| Msa0275520 | MtrunA17_Chr8g0346151 | 26.627 | 169 | 111 | 4 | 3 | 169 | 275 | 432 | 5.48e-14 | 68.9 |
| Msa0275520 | MtrunA17_Chr3g0126361 | 77.143 | 35 | 8 | 0 | 3 | 37 | 98 | 132 | 2.08e-13 | 64.3 |
| Msa0275520 | MtrunA17_Chr7g0275821 | 24.551 | 167 | 101 | 3 | 6 | 170 | 251 | 394 | 6.29e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275520 | AT3G06120.1 | 66.474 | 173 | 51 | 2 | 6 | 171 | 1 | 173 | 1.87e-72 | 217 |
| Msa0275520 | AT3G24140.2 | 46.809 | 188 | 80 | 3 | 6 | 177 | 197 | 380 | 7.96e-48 | 160 |
| Msa0275520 | AT3G24140.1 | 46.809 | 188 | 80 | 3 | 6 | 177 | 197 | 380 | 1.04e-47 | 160 |
| Msa0275520 | AT1G72210.2 | 37.209 | 172 | 96 | 3 | 6 | 171 | 125 | 290 | 7.41e-32 | 116 |
| Msa0275520 | AT2G46810.4 | 44.379 | 169 | 79 | 4 | 6 | 171 | 121 | 277 | 7.43e-32 | 117 |
| Msa0275520 | AT1G72210.1 | 36.994 | 173 | 97 | 3 | 6 | 172 | 125 | 291 | 8.31e-32 | 117 |
| Msa0275520 | AT2G46810.2 | 43.529 | 170 | 81 | 4 | 6 | 172 | 121 | 278 | 1.06e-31 | 116 |
| Msa0275520 | AT4G01460.1 | 41.420 | 169 | 95 | 2 | 6 | 172 | 115 | 281 | 1.26e-31 | 116 |
| Msa0275520 | AT4G01460.2 | 41.420 | 169 | 95 | 2 | 6 | 172 | 115 | 281 | 1.26e-31 | 116 |
| Msa0275520 | AT2G46810.3 | 43.529 | 170 | 81 | 4 | 6 | 172 | 181 | 338 | 2.71e-31 | 116 |
| Msa0275520 | AT2G46810.1 | 43.529 | 170 | 81 | 4 | 6 | 172 | 193 | 350 | 3.34e-31 | 116 |
| Msa0275520 | AT5G53210.2 | 72.464 | 69 | 19 | 0 | 3 | 71 | 99 | 167 | 4.90e-31 | 115 |
| Msa0275520 | AT5G53210.2 | 52.857 | 70 | 33 | 0 | 103 | 172 | 276 | 345 | 5.17e-18 | 80.5 |
| Msa0275520 | AT5G53210.1 | 72.464 | 69 | 19 | 0 | 3 | 71 | 99 | 167 | 5.97e-31 | 115 |
| Msa0275520 | AT5G53210.1 | 52.174 | 69 | 33 | 0 | 103 | 171 | 276 | 344 | 1.94e-17 | 79.0 |
| Msa0275520 | AT1G22490.1 | 37.126 | 167 | 102 | 2 | 6 | 172 | 115 | 278 | 1.40e-30 | 113 |
| Msa0275520 | AT1G22490.2 | 38.323 | 167 | 100 | 2 | 6 | 172 | 115 | 278 | 1.43e-30 | 114 |
| Msa0275520 | AT3G61950.6 | 43.038 | 158 | 76 | 5 | 2 | 158 | 124 | 268 | 1.22e-29 | 110 |
| Msa0275520 | AT3G61950.2 | 43.038 | 158 | 76 | 5 | 2 | 158 | 124 | 268 | 1.49e-29 | 110 |
| Msa0275520 | AT3G61950.1 | 43.038 | 158 | 76 | 5 | 2 | 158 | 175 | 319 | 5.50e-29 | 110 |
| Msa0275520 | AT3G61950.3 | 43.038 | 158 | 76 | 5 | 2 | 158 | 175 | 319 | 5.83e-29 | 110 |
| Msa0275520 | AT5G65320.2 | 34.118 | 170 | 111 | 1 | 6 | 174 | 102 | 271 | 3.95e-23 | 93.2 |
| Msa0275520 | AT5G65320.1 | 34.524 | 168 | 109 | 1 | 6 | 172 | 102 | 269 | 6.62e-23 | 92.8 |
| Msa0275520 | AT5G46690.2 | 34.872 | 195 | 92 | 4 | 6 | 171 | 88 | 276 | 6.32e-22 | 90.1 |
| Msa0275520 | AT5G46690.1 | 34.343 | 198 | 95 | 4 | 6 | 174 | 88 | 279 | 8.89e-22 | 90.5 |
| Msa0275520 | AT5G46760.1 | 28.488 | 172 | 102 | 4 | 6 | 171 | 414 | 570 | 2.77e-13 | 67.4 |
Find 34 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTGTTTCTATATTAAA+AGG | 0.106112 | 2_3:-7576965 | Msa0275520:CDS |
| TTAAACTCTTCCTTCTCTTT+TGG | 0.165473 | 2_3:+7576462 | None:intergenic |
| GGAGACCAAGCATCAATAAT+AGG | 0.279505 | 2_3:-7576539 | Msa0275520:CDS |
| GATATCTCTTCCGGTGGAAT+TGG | 0.287634 | 2_3:-7576386 | Msa0275520:CDS |
| GATGTAGAAGTGAAAATTTC+GGG | 0.305312 | 2_3:-7576311 | Msa0275520:CDS |
| CATCAATTTGATATCTCTTC+CGG | 0.314307 | 2_3:-7576395 | Msa0275520:CDS |
| TTTGGACTCGGACCTGGGCT+AGG | 0.337861 | 2_3:+7576437 | None:intergenic |
| AGATGTAGAAGTGAAAATTT+CGG | 0.352906 | 2_3:-7576312 | Msa0275520:CDS |
| GAGACCAAGCATCAATAATA+GGG | 0.364080 | 2_3:-7576538 | Msa0275520:CDS |
| GTGGTTTCTCAAAGAATTCC+AGG | 0.381915 | 2_3:-7576269 | Msa0275520:CDS |
| ATATCTCTTCCGGTGGAATT+GGG | 0.386333 | 2_3:-7576385 | Msa0275520:CDS |
| TGGGACTAATAATGCTTTCA+AGG | 0.390600 | 2_3:-7576366 | Msa0275520:CDS |
| ACATAGCTGTTGAGAGGAAC+AGG | 0.425460 | 2_3:-7577031 | Msa0275520:CDS |
| ACCACTCTCAAAATCACGTT+TGG | 0.426156 | 2_3:+7576287 | None:intergenic |
| GAATTCCAGGTCAAGTTTCA+AGG | 0.446514 | 2_3:-7576256 | Msa0275520:CDS |
| CCCTTGTTTCTATATTAAAA+GGG | 0.462565 | 2_3:-7576964 | Msa0275520:intron |
| GACCGTTCTATACCAATTTG+TGG | 0.465718 | 2_3:-7576168 | Msa0275520:CDS |
| ATTCTAAAGCTTGAAGAACT+TGG | 0.481599 | 2_3:+7576486 | None:intergenic |
| TTGGACTCGGACCTGGGCTA+GGG | 0.504016 | 2_3:+7576438 | None:intergenic |
| TCTATACCAATTTGTGGTCA+AGG | 0.525881 | 2_3:-7576162 | Msa0275520:CDS |
| TCATCTTAACATCAGTAGCA+TGG | 0.547962 | 2_3:-7576195 | Msa0275520:CDS |
| ATAATCCTTGAAACTTGACC+TGG | 0.556421 | 2_3:+7576251 | None:intergenic |
| CAATTTGATATCTCTTCCGG+TGG | 0.570441 | 2_3:-7576392 | Msa0275520:CDS |
| AAGAGTTTAAGCCCTAGCCC+AGG | 0.572825 | 2_3:-7576449 | Msa0275520:CDS |
| ACAGATGAATGAACATCTCA+AGG | 0.583323 | 2_3:-7577003 | Msa0275520:CDS |
| ATTATTAGTCCCAATTCCAC+CGG | 0.583906 | 2_3:+7576376 | None:intergenic |
| CTATGTGAGACATGATCGAT+TGG | 0.585589 | 2_3:+7577048 | None:intergenic |
| AATAATGCTTTCAAGGAACT+AGG | 0.585664 | 2_3:-7576359 | Msa0275520:CDS |
| CTTTAGAATCCCAAAAGAGA+AGG | 0.588008 | 2_3:-7576472 | Msa0275520:CDS |
| ATATCAAATTGATGAAGTGT+TGG | 0.611378 | 2_3:+7576404 | None:intergenic |
| AGACCAAGCATCAATAATAG+GGG | 0.616273 | 2_3:-7576537 | Msa0275520:CDS |
| GACCACAAATTGGTATAGAA+CGG | 0.617195 | 2_3:+7576166 | None:intergenic |
| TGTCTCACATAGCTGTTGAG+AGG | 0.643820 | 2_3:-7577037 | Msa0275520:CDS |
| GACCAAGCATCAATAATAGG+GGG | 0.668211 | 2_3:-7576536 | Msa0275520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAGAAAATGTTAAATTA+CGG | + | chr2_3:7576398-7576417 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | + | chr2_3:7576530-7576549 | None:intergenic | 15.0% |
| !! | TACAAGAAAATGTTAAATTA+CGG | + | chr2_3:7576398-7576417 | None:intergenic | 15.0% |
| !! | AGACAATTTATAATATGATT+TGG | + | chr2_3:7576530-7576549 | None:intergenic | 15.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | + | chr2_3:7576268-7576287 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | + | chr2_3:7576269-7576288 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | + | chr2_3:7576397-7576416 | None:intergenic | 20.0% |
| !! | TCAATAGTGAAATAAAGATA+GGG | + | chr2_3:7576268-7576287 | None:intergenic | 20.0% |
| !! | TTCAATAGTGAAATAAAGAT+AGG | + | chr2_3:7576269-7576288 | None:intergenic | 20.0% |
| !! | ACAAGAAAATGTTAAATTAC+GGG | + | chr2_3:7576397-7576416 | None:intergenic | 20.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | + | chr2_3:7576224-7576243 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | + | chr2_3:7576225-7576244 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | - | chr2_3:7576222-7576241 | Msa0275520:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | + | chr2_3:7576226-7576245 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | + | chr2_3:7576317-7576336 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | - | chr2_3:7576594-7576613 | Msa0275520:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | + | chr2_3:7576785-7576804 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | - | chr2_3:7576874-7576893 | Msa0275520:intron | 25.0% |
| !! | CCTTTTAATATAGAAACAAG+GGG | + | chr2_3:7576224-7576243 | None:intergenic | 25.0% |
| !! | CCCTTTTAATATAGAAACAA+GGG | + | chr2_3:7576225-7576244 | None:intergenic | 25.0% |
| !!! | CCCTTGTTTCTATATTAAAA+GGG | - | chr2_3:7576222-7576241 | Msa0275520:CDS | 25.0% |
| !! | ACCCTTTTAATATAGAAACA+AGG | + | chr2_3:7576226-7576245 | None:intergenic | 25.0% |
| ! | TTAGCAATGAAATTAAAGAG+TGG | + | chr2_3:7576317-7576336 | None:intergenic | 25.0% |
| !!! | TTTTTGTAATTTGTGTGTGA+TGG | - | chr2_3:7576594-7576613 | Msa0275520:intron | 25.0% |
| ! | ATATCAAATTGATGAAGTGT+TGG | + | chr2_3:7576785-7576804 | None:intergenic | 25.0% |
| ! | AGATGTAGAAGTGAAAATTT+CGG | - | chr2_3:7576874-7576893 | Msa0275520:intron | 25.0% |
| ! | ATGAACATCTCAAGGTTTTA+AGG | - | chr2_3:7576191-7576210 | Msa0275520:CDS | 30.0% |
| !! | CCCCTTGTTTCTATATTAAA+AGG | - | chr2_3:7576221-7576240 | Msa0275520:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | - | chr2_3:7576544-7576563 | Msa0275520:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | + | chr2_3:7576703-7576722 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | + | chr2_3:7576726-7576745 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | + | chr2_3:7576727-7576746 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | - | chr2_3:7576791-7576810 | Msa0275520:intron | 30.0% | |
| AATAATGCTTTCAAGGAACT+AGG | - | chr2_3:7576827-7576846 | Msa0275520:intron | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | - | chr2_3:7576875-7576894 | Msa0275520:intron | 30.0% | |
| ! | ATGAACATCTCAAGGTTTTA+AGG | - | chr2_3:7576191-7576210 | Msa0275520:CDS | 30.0% |
| !! | CCCCTTGTTTCTATATTAAA+AGG | - | chr2_3:7576221-7576240 | Msa0275520:CDS | 30.0% |
| TTGTCTCTAAATATATGACG+AGG | - | chr2_3:7576544-7576563 | Msa0275520:intron | 30.0% | |
| !! | ATTCTAAAGCTTGAAGAACT+TGG | + | chr2_3:7576703-7576722 | None:intergenic | 30.0% |
| ! | TAAACTCTTCCTTCTCTTTT+GGG | + | chr2_3:7576726-7576745 | None:intergenic | 30.0% |
| ! | TTAAACTCTTCCTTCTCTTT+TGG | + | chr2_3:7576727-7576746 | None:intergenic | 30.0% |
| CATCAATTTGATATCTCTTC+CGG | - | chr2_3:7576791-7576810 | Msa0275520:intron | 30.0% | |
| AATAATGCTTTCAAGGAACT+AGG | - | chr2_3:7576827-7576846 | Msa0275520:intron | 30.0% | |
| GATGTAGAAGTGAAAATTTC+GGG | - | chr2_3:7576875-7576894 | Msa0275520:intron | 30.0% | |
| ACAGATGAATGAACATCTCA+AGG | - | chr2_3:7576183-7576202 | Msa0275520:CDS | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | - | chr2_3:7576599-7576618 | Msa0275520:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | - | chr2_3:7576648-7576667 | Msa0275520:intron | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | - | chr2_3:7576649-7576668 | Msa0275520:intron | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | - | chr2_3:7576714-7576733 | Msa0275520:intron | 35.0% |
| ATTATTAGTCCCAATTCCAC+CGG | + | chr2_3:7576813-7576832 | None:intergenic | 35.0% | |
| TGGGACTAATAATGCTTTCA+AGG | - | chr2_3:7576820-7576839 | Msa0275520:intron | 35.0% | |
| ATAATCCTTGAAACTTGACC+TGG | + | chr2_3:7576938-7576957 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | - | chr2_3:7576991-7577010 | Msa0275520:CDS | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | + | chr2_3:7577023-7577042 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | - | chr2_3:7577024-7577043 | Msa0275520:CDS | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | + | chr2_3:7577033-7577052 | None:intergenic | 35.0% |
| ACAGATGAATGAACATCTCA+AGG | - | chr2_3:7576183-7576202 | Msa0275520:CDS | 35.0% | |
| !! | GTAATTTGTGTGTGATGGAT+TGG | - | chr2_3:7576599-7576618 | Msa0275520:intron | 35.0% |
| GAGACCAAGCATCAATAATA+GGG | - | chr2_3:7576648-7576667 | Msa0275520:intron | 35.0% | |
| AGACCAAGCATCAATAATAG+GGG | - | chr2_3:7576649-7576668 | Msa0275520:intron | 35.0% | |
| !! | CTTTAGAATCCCAAAAGAGA+AGG | - | chr2_3:7576714-7576733 | Msa0275520:intron | 35.0% |
| ATTATTAGTCCCAATTCCAC+CGG | + | chr2_3:7576813-7576832 | None:intergenic | 35.0% | |
| TGGGACTAATAATGCTTTCA+AGG | - | chr2_3:7576820-7576839 | Msa0275520:intron | 35.0% | |
| ATAATCCTTGAAACTTGACC+TGG | + | chr2_3:7576938-7576957 | None:intergenic | 35.0% | |
| TCATCTTAACATCAGTAGCA+TGG | - | chr2_3:7576991-7577010 | Msa0275520:CDS | 35.0% | |
| GACCACAAATTGGTATAGAA+CGG | + | chr2_3:7577023-7577042 | None:intergenic | 35.0% | |
| TCTATACCAATTTGTGGTCA+AGG | - | chr2_3:7577024-7577043 | Msa0275520:CDS | 35.0% | |
| ! | GTTTTACCTTGACCACAAAT+TGG | + | chr2_3:7577033-7577052 | None:intergenic | 35.0% |
| CTATGTGAGACATGATCGAT+TGG | + | chr2_3:7576141-7576160 | None:intergenic | 40.0% | |
| GGAGACCAAGCATCAATAAT+AGG | - | chr2_3:7576647-7576666 | Msa0275520:intron | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | - | chr2_3:7576650-7576669 | Msa0275520:intron | 40.0% | |
| CAATTTGATATCTCTTCCGG+TGG | - | chr2_3:7576794-7576813 | Msa0275520:intron | 40.0% | |
| ATATCTCTTCCGGTGGAATT+GGG | - | chr2_3:7576801-7576820 | Msa0275520:intron | 40.0% | |
| !! | TCCAAACGTGATTTTGAGAG+TGG | - | chr2_3:7576898-7576917 | Msa0275520:intron | 40.0% |
| ACCACTCTCAAAATCACGTT+TGG | + | chr2_3:7576902-7576921 | None:intergenic | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | - | chr2_3:7576917-7576936 | Msa0275520:intron | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | - | chr2_3:7576930-7576949 | Msa0275520:intron | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | - | chr2_3:7577018-7577037 | Msa0275520:CDS | 40.0% | |
| CTATGTGAGACATGATCGAT+TGG | + | chr2_3:7576141-7576160 | None:intergenic | 40.0% | |
| GGAGACCAAGCATCAATAAT+AGG | - | chr2_3:7576647-7576666 | Msa0275520:intron | 40.0% | |
| GACCAAGCATCAATAATAGG+GGG | - | chr2_3:7576650-7576669 | Msa0275520:intron | 40.0% | |
| CAATTTGATATCTCTTCCGG+TGG | - | chr2_3:7576794-7576813 | Msa0275520:intron | 40.0% | |
| ATATCTCTTCCGGTGGAATT+GGG | - | chr2_3:7576801-7576820 | Msa0275520:intron | 40.0% | |
| !! | TCCAAACGTGATTTTGAGAG+TGG | - | chr2_3:7576898-7576917 | Msa0275520:intron | 40.0% |
| ACCACTCTCAAAATCACGTT+TGG | + | chr2_3:7576902-7576921 | None:intergenic | 40.0% | |
| GTGGTTTCTCAAAGAATTCC+AGG | - | chr2_3:7576917-7576936 | Msa0275520:intron | 40.0% | |
| GAATTCCAGGTCAAGTTTCA+AGG | - | chr2_3:7576930-7576949 | Msa0275520:intron | 40.0% | |
| GACCGTTCTATACCAATTTG+TGG | - | chr2_3:7577018-7577037 | Msa0275520:CDS | 40.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | - | chr2_3:7576149-7576168 | Msa0275520:CDS | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | - | chr2_3:7576155-7576174 | Msa0275520:CDS | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | + | chr2_3:7576655-7576674 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | + | chr2_3:7576770-7576789 | None:intergenic | 45.0% |
| GATATCTCTTCCGGTGGAAT+TGG | - | chr2_3:7576800-7576819 | Msa0275520:intron | 45.0% | |
| TGTCTCACATAGCTGTTGAG+AGG | - | chr2_3:7576149-7576168 | Msa0275520:CDS | 45.0% | |
| ACATAGCTGTTGAGAGGAAC+AGG | - | chr2_3:7576155-7576174 | Msa0275520:CDS | 45.0% | |
| CTCCCCCTATTATTGATGCT+TGG | + | chr2_3:7576655-7576674 | None:intergenic | 45.0% | |
| !!! | AGTGTTGGCTGCAGTGTTTT+TGG | + | chr2_3:7576770-7576789 | None:intergenic | 45.0% |
| GATATCTCTTCCGGTGGAAT+TGG | - | chr2_3:7576800-7576819 | Msa0275520:intron | 45.0% | |
| !!! | TCAATTTATTTTTTTATTTT+AGG | - | chr2_3:7576625-7576644 | Msa0275520:intron | 5.0% |
| !!! | CAATTTATTTTTTTATTTTA+GGG | - | chr2_3:7576626-7576645 | Msa0275520:intron | 5.0% |
| !!! | TCAATTTATTTTTTTATTTT+AGG | - | chr2_3:7576625-7576644 | Msa0275520:intron | 5.0% |
| !!! | CAATTTATTTTTTTATTTTA+GGG | - | chr2_3:7576626-7576645 | Msa0275520:intron | 5.0% |
| AAGAGTTTAAGCCCTAGCCC+AGG | - | chr2_3:7576737-7576756 | Msa0275520:intron | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | + | chr2_3:7576757-7576776 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | + | chr2_3:7576758-7576777 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | + | chr2_3:7576764-7576783 | None:intergenic | 50.0% |
| AAGAGTTTAAGCCCTAGCCC+AGG | - | chr2_3:7576737-7576756 | Msa0275520:intron | 50.0% | |
| !!! | GTGTTTTTGGACTCGGACCT+GGG | + | chr2_3:7576757-7576776 | None:intergenic | 50.0% |
| !!! | AGTGTTTTTGGACTCGGACC+TGG | + | chr2_3:7576758-7576777 | None:intergenic | 50.0% |
| !!! | GGCTGCAGTGTTTTTGGACT+CGG | + | chr2_3:7576764-7576783 | None:intergenic | 50.0% |
| TTGGACTCGGACCTGGGCTA+GGG | + | chr2_3:7576751-7576770 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | + | chr2_3:7576752-7576771 | None:intergenic | 60.0% | |
| TTGGACTCGGACCTGGGCTA+GGG | + | chr2_3:7576751-7576770 | None:intergenic | 60.0% | |
| TTTGGACTCGGACCTGGGCT+AGG | + | chr2_3:7576752-7576771 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7576133 | 7577075 | 7576133 | ID=Msa0275520;Name=Msa0275520 |
| chr2_3 | mRNA | 7576133 | 7577075 | 7576133 | ID=Msa0275520-mRNA-1;Parent=Msa0275520;Name=Msa0275520-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|179 |
| chr2_3 | exon | 7576965 | 7577075 | 7576965 | ID=Msa0275520-mRNA-1:exon:3463;Parent=Msa0275520-mRNA-1 |
| chr2_3 | exon | 7576133 | 7576561 | 7576133 | ID=Msa0275520-mRNA-1:exon:3462;Parent=Msa0275520-mRNA-1 |
| chr2_3 | CDS | 7576965 | 7577075 | 7576965 | ID=Msa0275520-mRNA-1:cds;Parent=Msa0275520-mRNA-1 |
| chr2_3 | CDS | 7576133 | 7576561 | 7576133 | ID=Msa0275520-mRNA-1:cds;Parent=Msa0275520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
