Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238820 | RHN72570.1 | 71.333 | 150 | 16 | 4 | 1 | 124 | 10 | 158 | 1.12e-41 | 175 |
| Msa0238820 | RHN72570.1 | 87.081 | 627 | 60 | 4 | 107 | 723 | 212 | 827 | 0.0 | 1076 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238820 | sp|Q9SSE9|JMJ25_ARATH | 47.695 | 499 | 214 | 9 | 249 | 716 | 410 | 892 | 1.41e-138 | 436 |
| Msa0238820 | sp|Q9SSE9|JMJ25_ARATH | 44.262 | 122 | 67 | 1 | 113 | 233 | 219 | 340 | 8.60e-22 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238820 | A0A396J3U9 | 71.333 | 150 | 16 | 4 | 1 | 124 | 10 | 158 | 5.34e-42 | 175 |
| Msa0238820 | A0A396J3U9 | 87.081 | 627 | 60 | 4 | 107 | 723 | 212 | 827 | 0.0 | 1076 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0238820 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197010 | Msa0238820 | 0.845573 | 3.732916e-59 | -8.615850e-47 |
| Msa0238820 | Msa0238840 | 0.942003 | 1.549362e-101 | -8.615850e-47 |
| Msa0238820 | Msa0276570 | 0.845007 | 5.309968e-59 | -8.615850e-47 |
| Msa0238820 | Msa0316590 | 0.864939 | 8.473995e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238820 | MtrunA17_Chr2g0289121 | 87.081 | 627 | 60 | 4 | 107 | 723 | 212 | 827 | 0.0 | 1076 |
| Msa0238820 | MtrunA17_Chr2g0289121 | 71.333 | 150 | 16 | 4 | 1 | 124 | 10 | 158 | 1.03e-45 | 175 |
| Msa0238820 | MtrunA17_Chr4g0075261 | 61.178 | 662 | 198 | 9 | 104 | 721 | 224 | 870 | 0.0 | 788 |
| Msa0238820 | MtrunA17_Chr2g0289031 | 83.123 | 397 | 66 | 1 | 323 | 719 | 2 | 397 | 0.0 | 664 |
| Msa0238820 | MtrunA17_Chr1g0211711 | 49.083 | 654 | 277 | 10 | 109 | 715 | 404 | 1048 | 0.0 | 580 |
| Msa0238820 | MtrunA17_Chr1g0183311 | 48.567 | 663 | 257 | 12 | 129 | 715 | 225 | 879 | 0.0 | 573 |
| Msa0238820 | MtrunA17_Chr5g0426961 | 48.674 | 641 | 295 | 9 | 104 | 715 | 197 | 832 | 0.0 | 557 |
| Msa0238820 | MtrunA17_Chr5g0420361 | 46.625 | 637 | 269 | 16 | 125 | 699 | 152 | 779 | 4.97e-171 | 511 |
| Msa0238820 | MtrunA17_Chr6g0472441 | 41.291 | 666 | 285 | 18 | 105 | 699 | 71 | 701 | 2.27e-148 | 450 |
| Msa0238820 | MtrunA17_Chr1g0211661 | 44.464 | 578 | 267 | 12 | 123 | 658 | 300 | 865 | 1.36e-142 | 439 |
| Msa0238820 | MtrunA17_Chr8g0361381 | 85.981 | 214 | 24 | 2 | 300 | 513 | 1 | 208 | 2.08e-123 | 367 |
| Msa0238820 | MtrunA17_Chr1g0192011 | 34.195 | 658 | 350 | 11 | 117 | 718 | 333 | 963 | 1.40e-121 | 387 |
| Msa0238820 | MtrunA17_Chr1g0211691 | 44.528 | 530 | 235 | 12 | 129 | 606 | 423 | 945 | 5.28e-116 | 372 |
| Msa0238820 | MtrunA17_Chr7g0275771 | 40.517 | 464 | 239 | 7 | 116 | 543 | 204 | 666 | 9.41e-108 | 349 |
| Msa0238820 | MtrunA17_Chr7g0275771 | 50.679 | 221 | 96 | 3 | 497 | 717 | 719 | 926 | 1.29e-57 | 211 |
| Msa0238820 | MtrunA17_Chr2g0289041 | 91.411 | 163 | 14 | 0 | 112 | 274 | 42 | 204 | 2.03e-102 | 312 |
| Msa0238820 | MtrunA17_Chr5g0448301 | 41.273 | 487 | 229 | 12 | 176 | 628 | 168 | 631 | 3.71e-101 | 324 |
| Msa0238820 | MtrunA17_Chr2g0281051 | 32.253 | 679 | 366 | 13 | 123 | 714 | 282 | 953 | 5.55e-96 | 318 |
| Msa0238820 | MtrunA17_Chr1g0147021 | 41.986 | 443 | 214 | 8 | 124 | 546 | 944 | 1363 | 6.22e-96 | 326 |
| Msa0238820 | MtrunA17_Chr1g0147021 | 61.146 | 157 | 61 | 0 | 566 | 722 | 1546 | 1702 | 1.14e-54 | 204 |
| Msa0238820 | MtrunA17_Chr2g0289101 | 91.304 | 138 | 11 | 1 | 180 | 316 | 8 | 145 | 2.10e-84 | 264 |
| Msa0238820 | MtrunA17_Chr2g0289091 | 89.630 | 135 | 14 | 0 | 402 | 536 | 20 | 154 | 2.37e-81 | 265 |
| Msa0238820 | MtrunA17_Chr2g0289091 | 84.354 | 147 | 12 | 2 | 544 | 680 | 275 | 420 | 1.20e-76 | 253 |
| Msa0238820 | MtrunA17_Chr8g0361391 | 65.426 | 188 | 13 | 4 | 547 | 724 | 18 | 163 | 2.35e-70 | 227 |
| Msa0238820 | MtrunA17_Chr1g0211701 | 70.536 | 112 | 33 | 0 | 604 | 715 | 4 | 115 | 4.52e-47 | 164 |
| Msa0238820 | MtrunA17_Chr4g0048531 | 35.048 | 311 | 168 | 6 | 255 | 541 | 718 | 1018 | 1.87e-46 | 178 |
| Msa0238820 | MtrunA17_Chr4g0048531 | 43.005 | 193 | 93 | 3 | 541 | 717 | 1087 | 1278 | 1.57e-40 | 160 |
| Msa0238820 | MtrunA17_Chr4g0048531 | 36.196 | 163 | 98 | 3 | 123 | 281 | 340 | 500 | 5.07e-20 | 95.5 |
| Msa0238820 | MtrunA17_Chr7g0231061 | 49.032 | 155 | 79 | 0 | 392 | 546 | 12 | 166 | 5.22e-45 | 160 |
| Msa0238820 | MtrunA17_Chr8g0340381 | 63.218 | 87 | 28 | 2 | 426 | 512 | 36 | 118 | 4.95e-29 | 114 |
| Msa0238820 | MtrunA17_Chr8g0364421 | 32.636 | 239 | 133 | 5 | 156 | 383 | 3 | 224 | 7.43e-24 | 100 |
| Msa0238820 | MtrunA17_Chr1g0211671 | 59.322 | 59 | 24 | 0 | 657 | 715 | 15 | 73 | 7.29e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238820 | AT1G11950.1 | 55.395 | 621 | 259 | 7 | 112 | 718 | 255 | 871 | 0.0 | 695 |
| Msa0238820 | AT1G11950.3 | 55.395 | 621 | 259 | 7 | 112 | 718 | 255 | 871 | 0.0 | 695 |
| Msa0238820 | AT1G62310.1 | 56.066 | 610 | 244 | 6 | 112 | 699 | 271 | 878 | 0.0 | 673 |
| Msa0238820 | AT1G11950.2 | 52.813 | 551 | 242 | 7 | 112 | 648 | 255 | 801 | 0.0 | 579 |
| Msa0238820 | AT3G07610.1 | 47.695 | 499 | 214 | 9 | 249 | 716 | 410 | 892 | 1.43e-139 | 436 |
| Msa0238820 | AT3G07610.1 | 44.262 | 122 | 67 | 1 | 113 | 233 | 219 | 340 | 8.74e-23 | 104 |
| Msa0238820 | AT3G07610.3 | 44.981 | 518 | 222 | 10 | 249 | 716 | 410 | 914 | 2.52e-130 | 412 |
| Msa0238820 | AT3G07610.3 | 44.262 | 122 | 67 | 1 | 113 | 233 | 219 | 340 | 7.86e-23 | 105 |
| Msa0238820 | AT4G00990.2 | 43.880 | 433 | 207 | 9 | 124 | 533 | 154 | 573 | 2.81e-107 | 344 |
| Msa0238820 | AT4G00990.2 | 62.500 | 88 | 33 | 0 | 569 | 656 | 683 | 770 | 3.63e-29 | 124 |
| Msa0238820 | AT4G00990.3 | 43.880 | 433 | 207 | 9 | 124 | 533 | 154 | 573 | 3.15e-107 | 344 |
| Msa0238820 | AT4G00990.3 | 58.333 | 96 | 40 | 0 | 569 | 664 | 683 | 778 | 6.68e-30 | 127 |
| Msa0238820 | AT4G00990.1 | 43.880 | 433 | 207 | 9 | 124 | 533 | 154 | 573 | 6.23e-107 | 345 |
| Msa0238820 | AT4G00990.1 | 56.863 | 153 | 66 | 0 | 569 | 721 | 683 | 835 | 6.16e-52 | 194 |
| Msa0238820 | AT1G09060.2 | 30.920 | 663 | 355 | 12 | 117 | 718 | 273 | 893 | 4.26e-94 | 313 |
| Msa0238820 | AT1G09060.1 | 30.920 | 663 | 355 | 12 | 117 | 718 | 273 | 893 | 4.26e-94 | 313 |
| Msa0238820 | AT1G09060.4 | 30.920 | 663 | 355 | 12 | 117 | 718 | 287 | 907 | 5.27e-94 | 313 |
| Msa0238820 | AT1G09060.3 | 30.920 | 663 | 355 | 12 | 117 | 718 | 287 | 907 | 5.27e-94 | 313 |
| Msa0238820 | AT4G21430.1 | 28.919 | 657 | 377 | 15 | 120 | 722 | 299 | 919 | 3.71e-72 | 253 |
| Msa0238820 | AT3G07610.2 | 41.924 | 291 | 139 | 6 | 249 | 519 | 410 | 690 | 2.30e-59 | 214 |
| Msa0238820 | AT3G07610.2 | 44.262 | 122 | 67 | 1 | 113 | 233 | 219 | 340 | 1.43e-22 | 103 |
Find 114 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTATACCTTGTATTT+TGG | 0.175006 | 2_2:+12673467 | None:intergenic |
| CCACAACCACCTAGTTCTTT+TGG | 0.232816 | 2_2:+12672836 | None:intergenic |
| ATAAGTATGCCTAAATTCTT+TGG | 0.242870 | 2_2:+12671638 | None:intergenic |
| CATATTTCAAAGGAACATTT+AGG | 0.255943 | 2_2:+12673058 | None:intergenic |
| CAGATTTCGAGTGACCTTAT+AGG | 0.271177 | 2_2:-12672650 | Msa0238820:CDS |
| TCTCTTGCCCTGTGATTCTT+AGG | 0.277632 | 2_2:+12671075 | None:intergenic |
| GAGGGTCTTGTTCAAGATAA+TGG | 0.306737 | 2_2:-12671777 | Msa0238820:CDS |
| AGGAAAGTTGGATAATATAT+TGG | 0.315919 | 2_2:-12674140 | Msa0238820:intron |
| TTACTTGTATCGCAAGTTAT+TGG | 0.320991 | 2_2:+12672926 | None:intergenic |
| ACCATGATAGTTCTTTGATT+TGG | 0.323236 | 2_2:+12674246 | None:intergenic |
| GAAAACACTCCAAAGAATTT+AGG | 0.338721 | 2_2:-12671647 | Msa0238820:CDS |
| AAGAAGCTAGAGGAAGAGTT+TGG | 0.361005 | 2_2:-12671462 | Msa0238820:intron |
| TGACCAAGTTGTTAAAGAAT+TGG | 0.364202 | 2_2:-12670902 | Msa0238820:CDS |
| AGATGGGAGGATATATAAAT+TGG | 0.365687 | 2_2:-12672780 | Msa0238820:CDS |
| ATCACTATTCACATTCCATT+TGG | 0.366620 | 2_2:+12672877 | None:intergenic |
| AGAAACAGCTGGTGCACTTT+GGG | 0.368153 | 2_2:-12671715 | Msa0238820:CDS |
| CTTCCAATTCTTTAACAACT+TGG | 0.368676 | 2_2:+12670899 | None:intergenic |
| TTGCGATACAAGTAATTTAG+AGG | 0.380863 | 2_2:-12672918 | Msa0238820:CDS |
| AGTTGCCACCAAATGTTATA+AGG | 0.385343 | 2_2:-12672103 | Msa0238820:CDS |
| TCCTCTGCCAAGCTCTTCTC+TGG | 0.390375 | 2_2:+12672043 | None:intergenic |
| GACACTCGCCAGTTCTTTGA+AGG | 0.395120 | 2_2:-12672302 | Msa0238820:CDS |
| AAAGAATTGGAAGCTTTCAT+TGG | 0.399008 | 2_2:-12670889 | Msa0238820:CDS |
| AGGTGTAGTACCTTTGACTT+TGG | 0.407243 | 2_2:-12671359 | Msa0238820:CDS |
| ATTTAGGACAGCTTCTATAA+AGG | 0.417061 | 2_2:+12673074 | None:intergenic |
| TTATCATGACATGGAGTTTG+TGG | 0.423540 | 2_2:+12673342 | None:intergenic |
| GTTGGGAACCAATGGTTACT+TGG | 0.425031 | 2_2:-12672541 | Msa0238820:CDS |
| CTTTATAACCTTCAAAGAAC+TGG | 0.427941 | 2_2:+12672294 | None:intergenic |
| TGTACAGGCTATTGATTGCT+TGG | 0.428553 | 2_2:-12672465 | Msa0238820:CDS |
| CACCGTTCCTCCAATACTCT+TGG | 0.432232 | 2_2:+12672609 | None:intergenic |
| GAGCACATAAGGCTCAAGAT+AGG | 0.434348 | 2_2:-12671803 | Msa0238820:CDS |
| AAGTCAGGCCTTATAACATT+TGG | 0.438608 | 2_2:+12672095 | None:intergenic |
| AATTTATATATCCTCCCATC+TGG | 0.440912 | 2_2:+12672782 | None:intergenic |
| GTGATAGATGATGGCACAAA+AGG | 0.451379 | 2_2:+12671750 | None:intergenic |
| ACTTTGCAGTATCTTCTCTT+CGG | 0.452091 | 2_2:+12671685 | None:intergenic |
| TTGACTTTGGAGCAGAAACT+TGG | 0.452525 | 2_2:-12671346 | Msa0238820:CDS |
| CAGAAACAGCTGGTGCACTT+TGG | 0.453707 | 2_2:-12671716 | Msa0238820:CDS |
| GTCAAGAAGCAAAGGAAAGT+TGG | 0.457233 | 2_2:-12674152 | Msa0238820:CDS |
| ATGTTGAGATATTTACCAAA+TGG | 0.459203 | 2_2:-12672892 | Msa0238820:CDS |
| TATTTAAATTCCAAGAGTAT+TGG | 0.460840 | 2_2:-12672619 | Msa0238820:CDS |
| AGAACGTCAGATATTAGAAC+AGG | 0.460930 | 2_2:+12672584 | None:intergenic |
| GTATTTCTTTGCAACAACTA+AGG | 0.462093 | 2_2:+12673035 | None:intergenic |
| GGATCGCAATACTCTTGAAA+TGG | 0.475406 | 2_2:+12672155 | None:intergenic |
| TTAAATTCCAAGAGTATTGG+AGG | 0.475955 | 2_2:-12672616 | Msa0238820:CDS |
| AAATGATAATTCAAATGTAC+AGG | 0.476218 | 2_2:-12672480 | Msa0238820:CDS |
| TTATTGTTCTCCAGTAAAAG+AGG | 0.483787 | 2_2:-12671619 | Msa0238820:intron |
| GTAGTAAATTAATCATATAT+CGG | 0.484803 | 2_2:+12673544 | None:intergenic |
| GTTCTTTGAAGGTTATAAAG+AGG | 0.497551 | 2_2:-12672291 | Msa0238820:CDS |
| GTCGACTTCCTAAGAATCAC+AGG | 0.505039 | 2_2:-12671083 | Msa0238820:CDS |
| ACACCTTCAGATTTCTCACT+TGG | 0.506166 | 2_2:+12671290 | None:intergenic |
| AACAAGGGACAGGATTGAGT+TGG | 0.510060 | 2_2:-12672559 | Msa0238820:CDS |
| GTATCGCAAGTTATTGGTAG+AGG | 0.513590 | 2_2:+12672932 | None:intergenic |
| ACAAACTCCATGTCATGATA+AGG | 0.516847 | 2_2:-12673340 | Msa0238820:CDS |
| ACCAAATCAAAGAACTATCA+TGG | 0.517406 | 2_2:-12674247 | Msa0238820:CDS |
| TGGTTGTGGTGGCTGTGTGA+TGG | 0.522574 | 2_2:-12672822 | Msa0238820:CDS |
| TTCAGATTTCTCACTTGGTG+AGG | 0.524957 | 2_2:+12671295 | None:intergenic |
| AGCACATAAGGCTCAAGATA+GGG | 0.524973 | 2_2:-12671802 | Msa0238820:CDS |
| GAGTATTGCGATCCTCGAGC+TGG | 0.528942 | 2_2:-12672146 | Msa0238820:CDS |
| TCAGGCCTTATAACATTTGG+TGG | 0.529368 | 2_2:+12672098 | None:intergenic |
| TCAGATTTCTCACTTGGTGA+GGG | 0.534163 | 2_2:+12671296 | None:intergenic |
| CTGAAACGCATTCTTCCAGA+TGG | 0.536903 | 2_2:-12672797 | Msa0238820:CDS |
| ATGATAAGGAGCGTATGTAT+TGG | 0.537974 | 2_2:-12673326 | Msa0238820:intron |
| ACCAGAGAAGAGCTTGGCAG+AGG | 0.538284 | 2_2:-12672044 | Msa0238820:CDS |
| AGGATTGAGTTGGGAACCAA+TGG | 0.540538 | 2_2:-12672549 | Msa0238820:CDS |
| ACAAGGGACAGGATTGAGTT+GGG | 0.543562 | 2_2:-12672558 | Msa0238820:CDS |
| CTTTGTGTCACCAGAAAATG+TGG | 0.546636 | 2_2:-12671136 | Msa0238820:CDS |
| GACGTTCTCAAACAAGGGAC+AGG | 0.546938 | 2_2:-12672569 | Msa0238820:CDS |
| AAGATTAAAATTTATAAACA+AGG | 0.547287 | 2_2:-12674454 | Msa0238820:CDS |
| GAGATTGAAGCCAAAATACA+AGG | 0.547821 | 2_2:-12673477 | Msa0238820:intron |
| ACTTGGTGAGGGCATCCAGC+AGG | 0.549347 | 2_2:+12671307 | None:intergenic |
| ACTTGAAGATGAAGAAGATG+AGG | 0.552004 | 2_2:-12674200 | Msa0238820:CDS |
| AATGTTATAAGGCCTGACTT+AGG | 0.554124 | 2_2:-12672092 | Msa0238820:CDS |
| TTCTTTGAAGGTTATAAAGA+GGG | 0.554859 | 2_2:-12672290 | Msa0238820:CDS |
| ATATCTGACGTTCTCAAACA+AGG | 0.554941 | 2_2:-12672575 | Msa0238820:CDS |
| TTCCAAGAGTATTGGAGGAA+CGG | 0.556361 | 2_2:-12672611 | Msa0238820:CDS |
| CCAAAAGAACTAGGTGGTTG+TGG | 0.561255 | 2_2:-12672836 | Msa0238820:CDS |
| ACAACTAAGGCATATTTCAA+AGG | 0.561651 | 2_2:+12673048 | None:intergenic |
| TATCTGACGTTCTCAAACAA+GGG | 0.569647 | 2_2:-12672574 | Msa0238820:CDS |
| AAAACAAAAGAATGTTGAGA+AGG | 0.573446 | 2_2:-12672714 | Msa0238820:CDS |
| TGAAACTTCATTTCAAAGCG+TGG | 0.577340 | 2_2:+12672995 | None:intergenic |
| TGATTGCTTGGCTAGTTGTG+AGG | 0.579197 | 2_2:-12672453 | Msa0238820:intron |
| TAACAACTTGGTCAACAGCA+TGG | 0.580070 | 2_2:+12670911 | None:intergenic |
| ATGACAAAGTCAAGAAGCAA+AGG | 0.583092 | 2_2:-12674160 | Msa0238820:CDS |
| AGATGCTCAAGCTAAAAGAC+TGG | 0.588373 | 2_2:-12672241 | Msa0238820:CDS |
| AATGCTCTCCAAGTAACCAT+TGG | 0.591964 | 2_2:+12672533 | None:intergenic |
| TAAGGCTCAAGATAGGGAAG+AGG | 0.594993 | 2_2:-12671796 | Msa0238820:CDS |
| AAATGGAATGTGAATAGTGA+TGG | 0.595578 | 2_2:-12672875 | Msa0238820:CDS |
| TTGGTGGCAACTTTGCAGCA+AGG | 0.598809 | 2_2:+12672114 | None:intergenic |
| AACGGATAAACTCGTCACAA+TGG | 0.599920 | 2_2:+12672183 | None:intergenic |
| TGCGATACAAGTAATTTAGA+GGG | 0.601791 | 2_2:-12672917 | Msa0238820:CDS |
| AAAGATACATCAGAAACAGC+TGG | 0.604136 | 2_2:-12671726 | Msa0238820:CDS |
| GGTATCTCAATCTCTGAACA+TGG | 0.604496 | 2_2:+12673363 | None:intergenic |
| GAAGCAGTATTTATACCTGC+TGG | 0.606997 | 2_2:-12671322 | Msa0238820:CDS |
| AGTTTCTGCTCCAAAGTCAA+AGG | 0.611547 | 2_2:+12671349 | None:intergenic |
| TATGGAACCAGAGAAGAGCT+TGG | 0.615802 | 2_2:-12672050 | Msa0238820:CDS |
| AAGGCTCAAGATAGGGAAGA+GGG | 0.620022 | 2_2:-12671795 | Msa0238820:CDS |
| TAAGGTCACTCGAAATCTGA+CGG | 0.626973 | 2_2:+12672654 | None:intergenic |
| TGAGCATAAGAAGAAGCTAG+AGG | 0.629510 | 2_2:-12671472 | Msa0238820:CDS |
| GAATGTGCTCCAAAAGAACT+AGG | 0.632610 | 2_2:-12672845 | Msa0238820:CDS |
| TCACCAAGTGAGAAATCTGA+AGG | 0.633939 | 2_2:-12671293 | Msa0238820:intron |
| AACGCATTCTTCCAGATGGG+AGG | 0.648445 | 2_2:-12672793 | Msa0238820:CDS |
| ACTCTTGAAATGGCAAACAA+CGG | 0.653289 | 2_2:+12672165 | None:intergenic |
| ATACGCTCCTTATCATGACA+TGG | 0.656480 | 2_2:+12673333 | None:intergenic |
| TGAAACGCATTCTTCCAGAT+GGG | 0.664559 | 2_2:-12672796 | Msa0238820:CDS |
| AGGTTGAGAATTCCAGCTCG+AGG | 0.678355 | 2_2:+12672134 | None:intergenic |
| TGTTGCAAAGAAATACGCAA+CGG | 0.692822 | 2_2:-12673028 | Msa0238820:CDS |
| TCATTGTGATATTGCAGACG+CGG | 0.702116 | 2_2:-12672003 | Msa0238820:intron |
| GGTCTTGTTCAAGATAATGG+AGG | 0.703775 | 2_2:-12671774 | Msa0238820:CDS |
| AAAGAACTAGGTGGTTGTGG+TGG | 0.707130 | 2_2:-12672833 | Msa0238820:CDS |
| AGAGGTGATGAATACATGCA+TGG | 0.707440 | 2_2:-12672962 | Msa0238820:CDS |
| ATAAACTCGTCACAATGGCG+CGG | 0.715284 | 2_2:+12672188 | None:intergenic |
| TCGACTTCCTAAGAATCACA+GGG | 0.715729 | 2_2:-12671082 | Msa0238820:CDS |
| GGCAAGAGAAGACAAACTTG+AGG | 0.737690 | 2_2:-12671061 | Msa0238820:intron |
| TGTGCTCCAAAAGAACTAGG+TGG | 0.792037 | 2_2:-12672842 | Msa0238820:CDS |
| GGTGATGAATACATGCATGG+TGG | 0.798300 | 2_2:-12672959 | Msa0238820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTAAAATTTATAAACA+AGG | - | chr2_2:12670873-12670892 | Msa0238820:CDS | 10.0% |
| !! | TTATAAAGAGAAATAAATAT+TGG | + | chr2_2:12672986-12673005 | None:intergenic | 10.0% |
| !! | TTAATTATTGTGTTTATTTA+TGG | - | chr2_2:12674345-12674364 | Msa0238820:CDS | 10.0% |
| !! | TAATTATTGTGTTTATTTAT+GGG | - | chr2_2:12674346-12674365 | Msa0238820:CDS | 10.0% |
| !! | GTAGTAAATTAATCATATAT+CGG | + | chr2_2:12671786-12671805 | None:intergenic | 15.0% |
| !!! | TCTTTTGTATTTTGTTTTTT+TGG | - | chr2_2:12672198-12672217 | Msa0238820:CDS | 15.0% |
| !! | AATTATTGTGTTTATTTATG+GGG | - | chr2_2:12674347-12674366 | Msa0238820:CDS | 15.0% |
| !!! | ATGCTAATTTTATTCCTTTA+TGG | - | chr2_2:12671225-12671244 | Msa0238820:intron | 20.0% |
| !! | AACTTGTGTTAAATAATTAC+AGG | - | chr2_2:12671285-12671304 | Msa0238820:intron | 20.0% |
| !!! | ACATGTTTTGATATTTTGTT+TGG | + | chr2_2:12671314-12671333 | None:intergenic | 20.0% |
| !!! | GTTTAAGATGTATTAAAGAT+TGG | - | chr2_2:12671398-12671417 | Msa0238820:intron | 20.0% |
| !!! | TTTTTTTCATTTTTGCACAT+AGG | - | chr2_2:12671517-12671536 | Msa0238820:intron | 20.0% |
| !! | CATTAGAGAAACAAATTTAA+GGG | + | chr2_2:12671667-12671686 | None:intergenic | 20.0% |
| !! | TCATTAGAGAAACAAATTTA+AGG | + | chr2_2:12671668-12671687 | None:intergenic | 20.0% |
| !!! | TAAATTTTCCAAACTATTAC+TGG | - | chr2_2:12672100-12672119 | Msa0238820:CDS | 20.0% |
| !! | AAGTTTCAATACAAAAATAG+AGG | - | chr2_2:12672347-12672366 | Msa0238820:intron | 20.0% |
| !!! | TAAATAGCTTTTTTCCTATA+AGG | + | chr2_2:12672694-12672713 | None:intergenic | 20.0% |
| !!! | TATTTAAATTCCAAGAGTAT+TGG | - | chr2_2:12672708-12672727 | Msa0238820:CDS | 20.0% |
| !! | AAATGATAATTCAAATGTAC+AGG | - | chr2_2:12672847-12672866 | Msa0238820:CDS | 20.0% |
| !! | GAAGAAGATATAAAAATTTC+TGG | - | chr2_2:12673059-12673078 | Msa0238820:CDS | 20.0% |
| !!! | TATTGTTCAATAATTTTGAC+AGG | - | chr2_2:12673429-12673448 | Msa0238820:intron | 20.0% |
| !!! | AAAAATAAAAAGAGCACATA+AGG | - | chr2_2:12673513-12673532 | Msa0238820:CDS | 20.0% |
| !!! | TAATAAAATACCTCTTTTAC+TGG | + | chr2_2:12673721-12673740 | None:intergenic | 20.0% |
| !!! | TCACATATAATCAACATTTT+CGG | - | chr2_2:12673741-12673760 | Msa0238820:intron | 20.0% |
| !! | CAAAAGTCAAATAAAAACAT+TGG | + | chr2_2:12673837-12673856 | None:intergenic | 20.0% |
| !! | ATTATTGTGTTTATTTATGG+GGG | - | chr2_2:12674348-12674367 | Msa0238820:CDS | 20.0% |
| !! | ATCAACAATCTGAGTTTTTA+AGG | - | chr2_2:12670904-12670923 | Msa0238820:CDS | 25.0% |
| ! | AGGAAAGTTGGATAATATAT+TGG | - | chr2_2:12671187-12671206 | Msa0238820:intron | 25.0% |
| ! | TTTGTACAAGATACAAATTG+TGG | + | chr2_2:12671361-12671380 | None:intergenic | 25.0% |
| ! | TATTAACAAATATGTGACCT+TGG | + | chr2_2:12671454-12671473 | None:intergenic | 25.0% |
| ! | ATATCTCCAATTGACATATT+GGG | + | chr2_2:12671546-12671565 | None:intergenic | 25.0% |
| ! | TCAAAAATTAAGCAAAGAGA+TGG | + | chr2_2:12671811-12671830 | None:intergenic | 25.0% |
| !! | TGAAGTTATACCTTGTATTT+TGG | + | chr2_2:12671863-12671882 | None:intergenic | 25.0% |
| ! | ATATGAGAGTTTATTGTTAG+TGG | + | chr2_2:12671936-12671955 | None:intergenic | 25.0% |
| ! | TAACAATAAACTCTCATATC+AGG | - | chr2_2:12671937-12671956 | Msa0238820:intron | 25.0% |
| ! | TGCAACATAGTAAGTATAAA+AGG | + | chr2_2:12672045-12672064 | None:intergenic | 25.0% |
| ! | CATATTTCAAAGGAACATTT+AGG | + | chr2_2:12672272-12672291 | None:intergenic | 25.0% |
| ! | ATGTTGAGATATTTACCAAA+TGG | - | chr2_2:12672435-12672454 | Msa0238820:intron | 25.0% |
| ! | AAAACAAAAGAATGTTGAGA+AGG | - | chr2_2:12672613-12672632 | Msa0238820:CDS | 25.0% |
| ! | TTTCGTAGTTAAATTTCCTT+TGG | - | chr2_2:12672902-12672921 | Msa0238820:CDS | 25.0% |
| !! | TTCTTTGAAGGTTATAAAGA+GGG | - | chr2_2:12673037-12673056 | Msa0238820:CDS | 25.0% |
| !! | ACATTTTCAAACTCATCATA+AGG | + | chr2_2:12673115-12673134 | None:intergenic | 25.0% |
| !!! | TATTTTGACTCATATAACTG+AGG | - | chr2_2:12673456-12673475 | Msa0238820:intron | 25.0% |
| ! | ATAAGTATGCCTAAATTCTT+TGG | + | chr2_2:12673692-12673711 | None:intergenic | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | + | chr2_2:12673826-12673845 | None:intergenic | 25.0% |
| ! | CAAGATTCTTAATCAATTAC+AGG | - | chr2_2:12673948-12673967 | Msa0238820:intron | 25.0% |
| !!! | ACATACATGTACTTTTAAAG+AGG | + | chr2_2:12674083-12674102 | None:intergenic | 25.0% |
| ! | CACAATAATTAAGCAAAGTT+TGG | + | chr2_2:12674337-12674356 | None:intergenic | 25.0% |
| !! | GTGATATTTTTCTATGAAAC+AGG | - | chr2_2:12674377-12674396 | Msa0238820:CDS | 25.0% |
| ACCAAATCAAAGAACTATCA+TGG | - | chr2_2:12671080-12671099 | Msa0238820:CDS | 30.0% | |
| ACCATGATAGTTCTTTGATT+TGG | + | chr2_2:12671084-12671103 | None:intergenic | 30.0% | |
| AGCAAAAATAGTTGCCATAA+AGG | + | chr2_2:12671242-12671261 | None:intergenic | 30.0% | |
| ACATCTAAATAACCATTCCA+AGG | - | chr2_2:12671434-12671453 | Msa0238820:intron | 30.0% | |
| TATCTCCAATTGACATATTG+GGG | + | chr2_2:12671545-12671564 | None:intergenic | 30.0% | |
| GATATCTCCAATTGACATAT+TGG | + | chr2_2:12671547-12671566 | None:intergenic | 30.0% | |
| CATTGCAATTGCAATTCTTA+CGG | + | chr2_2:12671590-12671609 | None:intergenic | 30.0% | |
| TTAAACCTTAATCATTCCTC+TGG | + | chr2_2:12671625-12671644 | None:intergenic | 30.0% | |
| TGTCAATACCAGTAATAGTT+TGG | + | chr2_2:12672111-12672130 | None:intergenic | 30.0% | |
| ! | ATTTAGGACAGCTTCTATAA+AGG | + | chr2_2:12672256-12672275 | None:intergenic | 30.0% |
| ACAACTAAGGCATATTTCAA+AGG | + | chr2_2:12672282-12672301 | None:intergenic | 30.0% | |
| GTATTTCTTTGCAACAACTA+AGG | + | chr2_2:12672295-12672314 | None:intergenic | 30.0% | |
| TTACTTGTATCGCAAGTTAT+TGG | + | chr2_2:12672404-12672423 | None:intergenic | 30.0% | |
| TTGCGATACAAGTAATTTAG+AGG | - | chr2_2:12672409-12672428 | Msa0238820:intron | 30.0% | |
| TGCGATACAAGTAATTTAGA+GGG | - | chr2_2:12672410-12672429 | Msa0238820:intron | 30.0% | |
| ATCACTATTCACATTCCATT+TGG | + | chr2_2:12672453-12672472 | None:intergenic | 30.0% | |
| AAATGGAATGTGAATAGTGA+TGG | - | chr2_2:12672452-12672471 | Msa0238820:intron | 30.0% | |
| AATTTATATATCCTCCCATC+TGG | + | chr2_2:12672548-12672567 | None:intergenic | 30.0% | |
| AGATGGGAGGATATATAAAT+TGG | - | chr2_2:12672547-12672566 | Msa0238820:CDS | 30.0% | |
| !! | TTAAATTCCAAGAGTATTGG+AGG | - | chr2_2:12672711-12672730 | Msa0238820:CDS | 30.0% |
| TTCTCTTTATAAACCTTTGC+AGG | - | chr2_2:12672994-12673013 | Msa0238820:CDS | 30.0% | |
| CTTTATAACCTTCAAAGAAC+TGG | + | chr2_2:12673036-12673055 | None:intergenic | 30.0% | |
| ! | GTTCTTTGAAGGTTATAAAG+AGG | - | chr2_2:12673036-12673055 | Msa0238820:CDS | 30.0% |
| ! | TTTTCAAACTCATCATAAGG+TGG | + | chr2_2:12673112-12673131 | None:intergenic | 30.0% |
| ! | CCATAAGCAATGTAAGTTTT+TGG | + | chr2_2:12673262-12673281 | None:intergenic | 30.0% |
| CCAAAAACTTACATTGCTTA+TGG | - | chr2_2:12673259-12673278 | Msa0238820:intron | 30.0% | |
| ! | GTATCTTTTGTGATAGATGA+TGG | + | chr2_2:12673589-12673608 | None:intergenic | 30.0% |
| GAAAACACTCCAAAGAATTT+AGG | - | chr2_2:12673680-12673699 | Msa0238820:intron | 30.0% | |
| TTATTGTTCTCCAGTAAAAG+AGG | - | chr2_2:12673708-12673727 | Msa0238820:intron | 30.0% | |
| AACCTAAGAAACAAAGAAGT+TGG | + | chr2_2:12673797-12673816 | None:intergenic | 30.0% | |
| ! | ATGCATATATCCACATTTTC+TGG | + | chr2_2:12674204-12674223 | None:intergenic | 30.0% |
| TGGAATTCACATCAAAAGAA+AGG | + | chr2_2:12674317-12674336 | None:intergenic | 30.0% | |
| TGACCAAGTTGTTAAAGAAT+TGG | - | chr2_2:12674425-12674444 | Msa0238820:CDS | 30.0% | |
| CTTCCAATTCTTTAACAACT+TGG | + | chr2_2:12674431-12674450 | None:intergenic | 30.0% | |
| AAAGAATTGGAAGCTTTCAT+TGG | - | chr2_2:12674438-12674457 | Msa0238820:CDS | 30.0% | |
| ACTTGAAGATGAAGAAGATG+AGG | - | chr2_2:12671127-12671146 | Msa0238820:CDS | 35.0% | |
| ATGACAAAGTCAAGAAGCAA+AGG | - | chr2_2:12671167-12671186 | Msa0238820:intron | 35.0% | |
| ACAAATATGTGACCTTGGAA+TGG | + | chr2_2:12671449-12671468 | None:intergenic | 35.0% | |
| TTGCAATTCTTACGGCAAAA+GGG | + | chr2_2:12671582-12671601 | None:intergenic | 35.0% | |
| ATTGCAATTCTTACGGCAAA+AGG | + | chr2_2:12671583-12671602 | None:intergenic | 35.0% | |
| GAGATTGAAGCCAAAATACA+AGG | - | chr2_2:12671850-12671869 | Msa0238820:CDS | 35.0% | |
| TTATCATGACATGGAGTTTG+TGG | + | chr2_2:12671988-12672007 | None:intergenic | 35.0% | |
| ACAAACTCCATGTCATGATA+AGG | - | chr2_2:12671987-12672006 | Msa0238820:intron | 35.0% | |
| ! | ATGATAAGGAGCGTATGTAT+TGG | - | chr2_2:12672001-12672020 | Msa0238820:intron | 35.0% |
| TGTTGCAAAGAAATACGCAA+CGG | - | chr2_2:12672299-12672318 | Msa0238820:CDS | 35.0% | |
| TGAAACTTCATTTCAAAGCG+TGG | + | chr2_2:12672335-12672354 | None:intergenic | 35.0% | |
| AGAACGTCAGATATTAGAAC+AGG | + | chr2_2:12672746-12672765 | None:intergenic | 35.0% | |
| ATATCTGACGTTCTCAAACA+AGG | - | chr2_2:12672752-12672771 | Msa0238820:CDS | 35.0% | |
| TATCTGACGTTCTCAAACAA+GGG | - | chr2_2:12672753-12672772 | Msa0238820:CDS | 35.0% | |
| ! | GTGTCAATTTTTACCTGCAA+AGG | + | chr2_2:12673010-12673029 | None:intergenic | 35.0% |
| ACTCTTGAAATGGCAAACAA+CGG | + | chr2_2:12673165-12673184 | None:intergenic | 35.0% | |
| AGTTGCCACCAAATGTTATA+AGG | - | chr2_2:12673224-12673243 | Msa0238820:intron | 35.0% | |
| ! | AAGTCAGGCCTTATAACATT+TGG | + | chr2_2:12673235-12673254 | None:intergenic | 35.0% |
| AATGTTATAAGGCCTGACTT+AGG | - | chr2_2:12673235-12673254 | Msa0238820:intron | 35.0% | |
| !! | TAAGTTTTTGGACCTAAGTC+AGG | + | chr2_2:12673250-12673269 | None:intergenic | 35.0% |
| CTGTACTTTCAACGCTATAT+TGG | - | chr2_2:12673373-12673392 | Msa0238820:intron | 35.0% | |
| AAAGATACATCAGAAACAGC+TGG | - | chr2_2:12673601-12673620 | Msa0238820:intron | 35.0% | |
| ACTTTGCAGTATCTTCTCTT+CGG | + | chr2_2:12673645-12673664 | None:intergenic | 35.0% | |
| ! | CACCAACTTCTTTGTTTCTT+AGG | - | chr2_2:12673792-12673811 | Msa0238820:intron | 35.0% |
| GTCAAGAAGCAAAGGAAAGT+TGG | - | chr2_2:12671175-12671194 | Msa0238820:intron | 40.0% | |
| ATGTCATCAGTGCTTGAGAA+AGG | - | chr2_2:12671330-12671349 | Msa0238820:CDS | 40.0% | |
| ATCAGTGCTTGAGAAAGGAT+AGG | - | chr2_2:12671335-12671354 | Msa0238820:CDS | 40.0% | |
| AGGTACCCCAATATGTCAAT+TGG | - | chr2_2:12671537-12671556 | Msa0238820:intron | 40.0% | |
| TGCAATTCTTACGGCAAAAG+GGG | + | chr2_2:12671581-12671600 | None:intergenic | 40.0% | |
| AATGTTTGCTTGTGTTCCAG+AGG | - | chr2_2:12671606-12671625 | Msa0238820:intron | 40.0% | |
| GTGTTCCAGAGGAATGATTA+AGG | - | chr2_2:12671617-12671636 | Msa0238820:intron | 40.0% | |
| GGTATCTCAATCTCTGAACA+TGG | + | chr2_2:12671967-12671986 | None:intergenic | 40.0% | |
| ATACGCTCCTTATCATGACA+TGG | + | chr2_2:12671997-12672016 | None:intergenic | 40.0% | |
| AGAGGTGATGAATACATGCA+TGG | - | chr2_2:12672365-12672384 | Msa0238820:intron | 40.0% | |
| GTATCGCAAGTTATTGGTAG+AGG | + | chr2_2:12672398-12672417 | None:intergenic | 40.0% | |
| GAATGTGCTCCAAAAGAACT+AGG | - | chr2_2:12672482-12672501 | Msa0238820:CDS | 40.0% | |
| TGAAACGCATTCTTCCAGAT+GGG | - | chr2_2:12672531-12672550 | Msa0238820:CDS | 40.0% | |
| TAAGGTCACTCGAAATCTGA+CGG | + | chr2_2:12672676-12672695 | None:intergenic | 40.0% | |
| ! | CAGATTTCGAGTGACCTTAT+AGG | - | chr2_2:12672677-12672696 | Msa0238820:CDS | 40.0% |
| !! | TTCCAAGAGTATTGGAGGAA+CGG | - | chr2_2:12672716-12672735 | Msa0238820:CDS | 40.0% |
| AATGCTCTCCAAGTAACCAT+TGG | + | chr2_2:12672797-12672816 | None:intergenic | 40.0% | |
| ! | TGTACAGGCTATTGATTGCT+TGG | - | chr2_2:12672862-12672881 | Msa0238820:CDS | 40.0% |
| GTAAGAACGAACATCACCAA+AGG | + | chr2_2:12672921-12672940 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGCTTGAGCATCTC+TGG | + | chr2_2:12673085-12673104 | None:intergenic | 40.0% |
| AGATGCTCAAGCTAAAAGAC+TGG | - | chr2_2:12673086-12673105 | Msa0238820:CDS | 40.0% | |
| AACGGATAAACTCGTCACAA+TGG | + | chr2_2:12673147-12673166 | None:intergenic | 40.0% | |
| GGATCGCAATACTCTTGAAA+TGG | + | chr2_2:12673175-12673194 | None:intergenic | 40.0% | |
| ! | TCAGGCCTTATAACATTTGG+TGG | + | chr2_2:12673232-12673251 | None:intergenic | 40.0% |
| TCATTGTGATATTGCAGACG+CGG | - | chr2_2:12673324-12673343 | Msa0238820:intron | 40.0% | |
| TTGGTGCGACAAGTATAAGA+TGG | - | chr2_2:12673392-12673411 | Msa0238820:intron | 40.0% | |
| AGCACATAAGGCTCAAGATA+GGG | - | chr2_2:12673525-12673544 | Msa0238820:CDS | 40.0% | |
| !! | GAGGGTCTTGTTCAAGATAA+TGG | - | chr2_2:12673550-12673569 | Msa0238820:CDS | 40.0% |
| !! | GGTCTTGTTCAAGATAATGG+AGG | - | chr2_2:12673553-12673572 | Msa0238820:CDS | 40.0% |
| ! | GTGATAGATGATGGCACAAA+AGG | + | chr2_2:12673580-12673599 | None:intergenic | 40.0% |
| TGAGCATAAGAAGAAGCTAG+AGG | - | chr2_2:12673855-12673874 | Msa0238820:intron | 40.0% | |
| AAGAAGCTAGAGGAAGAGTT+TGG | - | chr2_2:12673865-12673884 | Msa0238820:intron | 40.0% | |
| ! | AGGTGTAGTACCTTTGACTT+TGG | - | chr2_2:12673968-12673987 | Msa0238820:intron | 40.0% |
| AGTTTCTGCTCCAAAGTCAA+AGG | + | chr2_2:12673981-12674000 | None:intergenic | 40.0% | |
| !! | TTGACTTTGGAGCAGAAACT+TGG | - | chr2_2:12673981-12674000 | Msa0238820:intron | 40.0% |
| GAAGCAGTATTTATACCTGC+TGG | - | chr2_2:12674005-12674024 | Msa0238820:intron | 40.0% | |
| ! | TCAGATTTCTCACTTGGTGA+GGG | + | chr2_2:12674034-12674053 | None:intergenic | 40.0% |
| ! | TTCAGATTTCTCACTTGGTG+AGG | + | chr2_2:12674035-12674054 | None:intergenic | 40.0% |
| TCACCAAGTGAGAAATCTGA+AGG | - | chr2_2:12674034-12674053 | Msa0238820:intron | 40.0% | |
| ACACCTTCAGATTTCTCACT+TGG | + | chr2_2:12674040-12674059 | None:intergenic | 40.0% | |
| CTTTGTGTCACCAGAAAATG+TGG | - | chr2_2:12674191-12674210 | Msa0238820:CDS | 40.0% | |
| TCGACTTCCTAAGAATCACA+GGG | - | chr2_2:12674245-12674264 | Msa0238820:CDS | 40.0% | |
| TAACAACTTGGTCAACAGCA+TGG | + | chr2_2:12674419-12674438 | None:intergenic | 40.0% | |
| CAATTGGAGATATCGCAGAG+AGG | - | chr2_2:12671553-12671572 | Msa0238820:intron | 45.0% | |
| GGTGATGAATACATGCATGG+TGG | - | chr2_2:12672368-12672387 | Msa0238820:intron | 45.0% | |
| TGTGCTCCAAAAGAACTAGG+TGG | - | chr2_2:12672485-12672504 | Msa0238820:CDS | 45.0% | |
| !! | CCACAACCACCTAGTTCTTT+TGG | + | chr2_2:12672494-12672513 | None:intergenic | 45.0% |
| CCAAAAGAACTAGGTGGTTG+TGG | - | chr2_2:12672491-12672510 | Msa0238820:CDS | 45.0% | |
| AAAGAACTAGGTGGTTGTGG+TGG | - | chr2_2:12672494-12672513 | Msa0238820:CDS | 45.0% | |
| CTGAAACGCATTCTTCCAGA+TGG | - | chr2_2:12672530-12672549 | Msa0238820:CDS | 45.0% | |
| AACAAGGGACAGGATTGAGT+TGG | - | chr2_2:12672768-12672787 | Msa0238820:CDS | 45.0% | |
| ACAAGGGACAGGATTGAGTT+GGG | - | chr2_2:12672769-12672788 | Msa0238820:CDS | 45.0% | |
| !! | AGGATTGAGTTGGGAACCAA+TGG | - | chr2_2:12672778-12672797 | Msa0238820:CDS | 45.0% |
| GTTGGGAACCAATGGTTACT+TGG | - | chr2_2:12672786-12672805 | Msa0238820:CDS | 45.0% | |
| ! | TGATTGCTTGGCTAGTTGTG+AGG | - | chr2_2:12672874-12672893 | Msa0238820:CDS | 45.0% |
| ATAAACTCGTCACAATGGCG+CGG | + | chr2_2:12673142-12673161 | None:intergenic | 45.0% | |
| TATGGAACCAGAGAAGAGCT+TGG | - | chr2_2:12673277-12673296 | Msa0238820:intron | 45.0% | |
| GAGCACATAAGGCTCAAGAT+AGG | - | chr2_2:12673524-12673543 | Msa0238820:CDS | 45.0% | |
| TAAGGCTCAAGATAGGGAAG+AGG | - | chr2_2:12673531-12673550 | Msa0238820:CDS | 45.0% | |
| AAGGCTCAAGATAGGGAAGA+GGG | - | chr2_2:12673532-12673551 | Msa0238820:CDS | 45.0% | |
| AGAAACAGCTGGTGCACTTT+GGG | - | chr2_2:12673612-12673631 | Msa0238820:intron | 45.0% | |
| ! | GTCGACTTCCTAAGAATCAC+AGG | - | chr2_2:12674244-12674263 | Msa0238820:CDS | 45.0% |
| TCTCTTGCCCTGTGATTCTT+AGG | + | chr2_2:12674255-12674274 | None:intergenic | 45.0% | |
| GGCAAGAGAAGACAAACTTG+AGG | - | chr2_2:12674266-12674285 | Msa0238820:CDS | 45.0% | |
| AACGCATTCTTCCAGATGGG+AGG | - | chr2_2:12672534-12672553 | Msa0238820:CDS | 50.0% | |
| CACCGTTCCTCCAATACTCT+TGG | + | chr2_2:12672721-12672740 | None:intergenic | 50.0% | |
| GACGTTCTCAAACAAGGGAC+AGG | - | chr2_2:12672758-12672777 | Msa0238820:CDS | 50.0% | |
| GACACTCGCCAGTTCTTTGA+AGG | - | chr2_2:12673025-12673044 | Msa0238820:CDS | 50.0% | |
| AGGTTGAGAATTCCAGCTCG+AGG | + | chr2_2:12673196-12673215 | None:intergenic | 50.0% | |
| ! | TTGGTGGCAACTTTGCAGCA+AGG | + | chr2_2:12673216-12673235 | None:intergenic | 50.0% |
| CAGAAACAGCTGGTGCACTT+TGG | - | chr2_2:12673611-12673630 | Msa0238820:intron | 50.0% | |
| TGGTTGTGGTGGCTGTGTGA+TGG | - | chr2_2:12672505-12672524 | Msa0238820:CDS | 55.0% | |
| ! | GAGTATTGCGATCCTCGAGC+TGG | - | chr2_2:12673181-12673200 | Msa0238820:intron | 55.0% |
| ACCAGAGAAGAGCTTGGCAG+AGG | - | chr2_2:12673283-12673302 | Msa0238820:intron | 55.0% | |
| TCCTCTGCCAAGCTCTTCTC+TGG | + | chr2_2:12673287-12673306 | None:intergenic | 55.0% | |
| !! | ACTTGGTGAGGGCATCCAGC+AGG | + | chr2_2:12674023-12674042 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 12670870 | 12674479 | 12670870 | ID=Msa0238820;Name=Msa0238820 |
| chr2_2 | mRNA | 12670870 | 12674479 | 12670870 | ID=Msa0238820-mRNA-1;Parent=Msa0238820;Name=Msa0238820-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|10|0|724 |
| chr2_2 | exon | 12674141 | 12674479 | 12674141 | ID=Msa0238820-mRNA-1:exon:5353;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12673478 | 12673610 | 12673478 | ID=Msa0238820-mRNA-1:exon:5352;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12673327 | 12673390 | 12673327 | ID=Msa0238820-mRNA-1:exon:5351;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12672454 | 12673123 | 12672454 | ID=Msa0238820-mRNA-1:exon:5350;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12672004 | 12672333 | 12672004 | ID=Msa0238820-mRNA-1:exon:5349;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12671620 | 12671898 | 12671620 | ID=Msa0238820-mRNA-1:exon:5348;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12671463 | 12671535 | 12671463 | ID=Msa0238820-mRNA-1:exon:5347;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12671294 | 12671379 | 12671294 | ID=Msa0238820-mRNA-1:exon:5346;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12671062 | 12671181 | 12671062 | ID=Msa0238820-mRNA-1:exon:5345;Parent=Msa0238820-mRNA-1 |
| chr2_2 | exon | 12670870 | 12670950 | 12670870 | ID=Msa0238820-mRNA-1:exon:5344;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12674141 | 12674479 | 12674141 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12673478 | 12673610 | 12673478 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12673327 | 12673390 | 12673327 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12672454 | 12673123 | 12672454 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12672004 | 12672333 | 12672004 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12671620 | 12671898 | 12671620 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12671463 | 12671535 | 12671463 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12671294 | 12671379 | 12671294 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12671062 | 12671181 | 12671062 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| chr2_2 | CDS | 12670870 | 12670950 | 12670870 | ID=Msa0238820-mRNA-1:cds;Parent=Msa0238820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
