Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276570 | XP_013462889.1 | 72.973 | 148 | 21 | 2 | 1 | 130 | 10 | 156 | 1.62e-47 | 192 |
| Msa0276570 | XP_013462889.1 | 87.261 | 628 | 57 | 4 | 111 | 728 | 211 | 825 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276570 | sp|Q9SSE9|JMJ25_ARATH | 47.791 | 498 | 214 | 9 | 255 | 721 | 410 | 892 | 1.99e-140 | 441 |
| Msa0276570 | sp|Q9SSE9|JMJ25_ARATH | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 9.30e-22 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0276570 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197010 | Msa0276570 | 0.888803 | 4.268717e-73 | -8.615850e-47 |
| Msa0238820 | Msa0276570 | 0.845007 | 5.309968e-59 | -8.615850e-47 |
| Msa0238840 | Msa0276570 | 0.869939 | 2.126103e-66 | -8.615850e-47 |
| Msa0276570 | Msa0316590 | 0.913396 | 6.457394e-84 | -8.615850e-47 |
| Msa0276570 | Msa0784290 | 0.808642 | 2.802099e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276570 | MtrunA17_Chr2g0289121 | 87.261 | 628 | 57 | 4 | 111 | 728 | 213 | 827 | 0.0 | 1082 |
| Msa0276570 | MtrunA17_Chr2g0289121 | 72.667 | 150 | 20 | 3 | 1 | 130 | 10 | 158 | 2.72e-50 | 189 |
| Msa0276570 | MtrunA17_Chr4g0075261 | 61.689 | 663 | 192 | 10 | 110 | 726 | 224 | 870 | 0.0 | 791 |
| Msa0276570 | MtrunA17_Chr2g0289031 | 83.586 | 396 | 65 | 0 | 329 | 724 | 2 | 397 | 0.0 | 670 |
| Msa0276570 | MtrunA17_Chr1g0211711 | 49.317 | 659 | 276 | 12 | 110 | 720 | 400 | 1048 | 0.0 | 585 |
| Msa0276570 | MtrunA17_Chr1g0183311 | 48.869 | 663 | 254 | 12 | 135 | 720 | 225 | 879 | 0.0 | 575 |
| Msa0276570 | MtrunA17_Chr5g0426961 | 48.750 | 640 | 295 | 9 | 110 | 720 | 197 | 832 | 0.0 | 561 |
| Msa0276570 | MtrunA17_Chr5g0420361 | 47.179 | 638 | 263 | 18 | 131 | 704 | 152 | 779 | 2.28e-173 | 517 |
| Msa0276570 | MtrunA17_Chr6g0472441 | 41.679 | 655 | 277 | 18 | 120 | 704 | 82 | 701 | 8.50e-148 | 448 |
| Msa0276570 | MtrunA17_Chr1g0211661 | 44.202 | 595 | 280 | 12 | 110 | 663 | 282 | 865 | 4.19e-144 | 444 |
| Msa0276570 | MtrunA17_Chr1g0192011 | 34.446 | 659 | 346 | 11 | 123 | 723 | 333 | 963 | 2.05e-121 | 387 |
| Msa0276570 | MtrunA17_Chr8g0361381 | 85.047 | 214 | 26 | 2 | 306 | 519 | 1 | 208 | 2.61e-121 | 361 |
| Msa0276570 | MtrunA17_Chr1g0211691 | 43.019 | 530 | 242 | 10 | 135 | 611 | 423 | 945 | 1.13e-114 | 368 |
| Msa0276570 | MtrunA17_Chr7g0275771 | 41.009 | 456 | 232 | 7 | 130 | 549 | 212 | 666 | 2.69e-109 | 353 |
| Msa0276570 | MtrunA17_Chr7g0275771 | 51.364 | 220 | 95 | 4 | 503 | 722 | 719 | 926 | 1.94e-58 | 213 |
| Msa0276570 | MtrunA17_Chr2g0289041 | 89.412 | 170 | 15 | 1 | 111 | 280 | 38 | 204 | 4.97e-103 | 314 |
| Msa0276570 | MtrunA17_Chr5g0448301 | 40.741 | 486 | 232 | 10 | 182 | 633 | 168 | 631 | 1.61e-102 | 327 |
| Msa0276570 | MtrunA17_Chr2g0281051 | 32.106 | 679 | 366 | 11 | 129 | 719 | 282 | 953 | 4.19e-98 | 324 |
| Msa0276570 | MtrunA17_Chr1g0147021 | 41.986 | 443 | 214 | 9 | 130 | 552 | 944 | 1363 | 6.77e-94 | 320 |
| Msa0276570 | MtrunA17_Chr1g0147021 | 61.783 | 157 | 60 | 0 | 571 | 727 | 1546 | 1702 | 2.11e-55 | 206 |
| Msa0276570 | MtrunA17_Chr2g0289101 | 93.382 | 136 | 8 | 1 | 186 | 320 | 8 | 143 | 4.46e-85 | 266 |
| Msa0276570 | MtrunA17_Chr2g0289091 | 89.630 | 135 | 14 | 0 | 408 | 542 | 20 | 154 | 2.85e-81 | 265 |
| Msa0276570 | MtrunA17_Chr2g0289091 | 85.616 | 146 | 11 | 1 | 550 | 685 | 275 | 420 | 3.69e-79 | 259 |
| Msa0276570 | MtrunA17_Chr8g0361391 | 66.310 | 187 | 12 | 3 | 553 | 729 | 18 | 163 | 7.35e-73 | 233 |
| Msa0276570 | MtrunA17_Chr1g0211701 | 71.429 | 112 | 32 | 0 | 609 | 720 | 4 | 115 | 7.68e-48 | 166 |
| Msa0276570 | MtrunA17_Chr4g0048531 | 35.294 | 306 | 174 | 4 | 261 | 547 | 718 | 1018 | 2.48e-47 | 181 |
| Msa0276570 | MtrunA17_Chr4g0048531 | 48.387 | 155 | 79 | 1 | 568 | 722 | 1125 | 1278 | 2.81e-41 | 162 |
| Msa0276570 | MtrunA17_Chr4g0048531 | 34.135 | 208 | 114 | 5 | 84 | 287 | 312 | 500 | 5.32e-21 | 99.0 |
| Msa0276570 | MtrunA17_Chr7g0231061 | 48.101 | 158 | 82 | 0 | 395 | 552 | 9 | 166 | 4.61e-45 | 160 |
| Msa0276570 | MtrunA17_Chr8g0340381 | 63.218 | 87 | 28 | 2 | 432 | 518 | 36 | 118 | 5.66e-29 | 114 |
| Msa0276570 | MtrunA17_Chr8g0364421 | 30.769 | 234 | 144 | 4 | 162 | 389 | 3 | 224 | 1.74e-23 | 99.8 |
| Msa0276570 | MtrunA17_Chr1g0211671 | 59.322 | 59 | 24 | 0 | 662 | 720 | 15 | 73 | 5.82e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276570 | AT1G11950.1 | 55.556 | 630 | 254 | 8 | 111 | 723 | 251 | 871 | 0.0 | 705 |
| Msa0276570 | AT1G11950.3 | 55.556 | 630 | 254 | 8 | 111 | 723 | 251 | 871 | 0.0 | 705 |
| Msa0276570 | AT1G62310.1 | 56.322 | 609 | 243 | 5 | 118 | 704 | 271 | 878 | 0.0 | 679 |
| Msa0276570 | AT1G11950.2 | 53.036 | 560 | 237 | 8 | 111 | 653 | 251 | 801 | 0.0 | 588 |
| Msa0276570 | AT3G07610.1 | 47.791 | 498 | 214 | 9 | 255 | 721 | 410 | 892 | 2.03e-141 | 441 |
| Msa0276570 | AT3G07610.1 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 9.46e-23 | 104 |
| Msa0276570 | AT3G07610.3 | 45.068 | 517 | 222 | 10 | 255 | 721 | 410 | 914 | 6.59e-132 | 416 |
| Msa0276570 | AT3G07610.3 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 8.51e-23 | 104 |
| Msa0276570 | AT4G00990.3 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 2.08e-107 | 345 |
| Msa0276570 | AT4G00990.3 | 59.375 | 96 | 39 | 0 | 574 | 669 | 683 | 778 | 1.45e-30 | 129 |
| Msa0276570 | AT4G00990.2 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 3.34e-107 | 344 |
| Msa0276570 | AT4G00990.2 | 63.636 | 88 | 32 | 0 | 574 | 661 | 683 | 770 | 8.62e-30 | 126 |
| Msa0276570 | AT4G00990.1 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 7.10e-107 | 345 |
| Msa0276570 | AT4G00990.1 | 57.516 | 153 | 65 | 0 | 574 | 726 | 683 | 835 | 1.19e-52 | 196 |
| Msa0276570 | AT1G09060.2 | 31.269 | 662 | 353 | 13 | 123 | 723 | 273 | 893 | 9.12e-95 | 315 |
| Msa0276570 | AT1G09060.1 | 31.269 | 662 | 353 | 13 | 123 | 723 | 273 | 893 | 9.12e-95 | 315 |
| Msa0276570 | AT1G09060.4 | 31.269 | 662 | 353 | 13 | 123 | 723 | 287 | 907 | 1.23e-94 | 315 |
| Msa0276570 | AT1G09060.3 | 31.269 | 662 | 353 | 13 | 123 | 723 | 287 | 907 | 1.23e-94 | 315 |
| Msa0276570 | AT4G21430.1 | 28.919 | 657 | 376 | 15 | 126 | 727 | 299 | 919 | 1.05e-72 | 254 |
| Msa0276570 | AT3G07610.2 | 41.924 | 291 | 139 | 6 | 255 | 525 | 410 | 690 | 1.06e-59 | 215 |
| Msa0276570 | AT3G07610.2 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 1.74e-22 | 103 |
Find 115 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTATACCTTGTATTT+TGG | 0.175006 | 2_3:+8847904 | None:intergenic |
| AAGATTAAAATTTATATAAA+AGG | 0.198623 | 2_3:-8848910 | Msa0276570:CDS |
| CCACAACCACCTAGTTCTTT+TGG | 0.232816 | 2_3:+8847273 | None:intergenic |
| CATATTTCAAAGGAACATTT+AGG | 0.255943 | 2_3:+8847495 | None:intergenic |
| TCTCTTGCCCTGTGATTCTT+AGG | 0.277632 | 2_3:+8845505 | None:intergenic |
| AAGAAGAGAAGAGTTGAAAA+TGG | 0.299932 | 2_3:-8848742 | Msa0276570:CDS |
| AGGAATGTTGGATAATATAT+TGG | 0.300780 | 2_3:-8848578 | Msa0276570:intron |
| GAGGGTCTTGTTCAAGATAA+TGG | 0.306737 | 2_3:-8846208 | Msa0276570:CDS |
| TTACTTGTATCACAAGTTAT+TGG | 0.332796 | 2_3:+8847363 | None:intergenic |
| GAAAACACTCGAAAGAATTT+AGG | 0.344475 | 2_3:-8846081 | Msa0276570:CDS |
| AGTACCATAGTTCTTTGATT+TGG | 0.344680 | 2_3:+8848702 | None:intergenic |
| AGATGGGAGGATATCTAAAT+TGG | 0.352006 | 2_3:-8847217 | Msa0276570:CDS |
| AAGAAGCTAGAGGAAGAGTT+TGG | 0.361005 | 2_3:-8845896 | Msa0276570:intron |
| TGACCAAGTTGTTAAAGAAT+TGG | 0.364202 | 2_3:-8845333 | Msa0276570:CDS |
| ATCACTATTCACATTCCATT+TGG | 0.366620 | 2_3:+8847314 | None:intergenic |
| AGAAACAGCTGGTGCACTTT+GGG | 0.368153 | 2_3:-8846149 | Msa0276570:CDS |
| CTTCCAATTCTTTAACAACT+TGG | 0.368676 | 2_3:+8845330 | None:intergenic |
| CAGATGTCAAGTGACCTTAT+AGG | 0.384738 | 2_3:-8847087 | Msa0276570:CDS |
| AGTTGCCACCAAATGTTATA+AGG | 0.385343 | 2_3:-8846540 | Msa0276570:CDS |
| TCCTCTGCCAAGCTCTTCTC+TGG | 0.390375 | 2_3:+8846480 | None:intergenic |
| GACACTCGCCAGTTCTTTGA+AGG | 0.395120 | 2_3:-8846739 | Msa0276570:CDS |
| AAAGAATTGGAAGCTTTCAT+TGG | 0.399008 | 2_3:-8845320 | Msa0276570:CDS |
| TTGTGATACAAGTAATTTAG+AGG | 0.403494 | 2_3:-8847355 | Msa0276570:CDS |
| ATCAAAATGCTCAAGAGATT+CGG | 0.413063 | 2_3:-8848773 | Msa0276570:CDS |
| GTTGGGAGCCAATGGTTACT+TGG | 0.413326 | 2_3:-8846978 | Msa0276570:CDS |
| ATTTAGGACAGCTTCTATAA+AGG | 0.417061 | 2_3:+8847511 | None:intergenic |
| TTATCATGACATGGAGTTTG+TGG | 0.423540 | 2_3:+8847779 | None:intergenic |
| ATTACCAAATCAAAGAACTA+TGG | 0.426043 | 2_3:-8848706 | Msa0276570:CDS |
| CTTTATAACCTTCAAAGAAC+TGG | 0.427941 | 2_3:+8846731 | None:intergenic |
| TGTACAGGCTATTGATTGCT+TGG | 0.428553 | 2_3:-8846902 | Msa0276570:CDS |
| GAGCACATAAGGCTCAAGAT+AGG | 0.434348 | 2_3:-8846234 | Msa0276570:CDS |
| AAGTCAGGCCTTATAACATT+TGG | 0.438608 | 2_3:+8846532 | None:intergenic |
| CACCGTTCCTCCAATACTCT+TGG | 0.440918 | 2_3:+8847046 | None:intergenic |
| AGAACGTCAAATATTAGAAC+AGG | 0.441025 | 2_3:+8847021 | None:intergenic |
| ACTTTGCAGTATCTTCTCTT+CGG | 0.452091 | 2_3:+8846119 | None:intergenic |
| CAGAAACAGCTGGTGCACTT+TGG | 0.453707 | 2_3:-8846150 | Msa0276570:CDS |
| ATGTTGAGATATTTACCAAA+TGG | 0.459203 | 2_3:-8847329 | Msa0276570:CDS |
| TATTTAAATTCCAAGAGTAT+TGG | 0.460840 | 2_3:-8847056 | Msa0276570:CDS |
| AATTTAGATATCCTCCCATC+TGG | 0.461007 | 2_3:+8847219 | None:intergenic |
| GTATTTCTTTGCAACAACTA+AGG | 0.462093 | 2_3:+8847472 | None:intergenic |
| GGATCGCAATACTCTTGAAA+TGG | 0.475406 | 2_3:+8846592 | None:intergenic |
| TTAAATTCCAAGAGTATTGG+AGG | 0.475955 | 2_3:-8847053 | Msa0276570:CDS |
| AAATGATAATTCAAATGTAC+AGG | 0.476218 | 2_3:-8846917 | Msa0276570:CDS |
| CACAAGAAAATAAAACTTGA+AGG | 0.478550 | 2_3:-8848670 | Msa0276570:CDS |
| TTATTGTTCTCCAGTAAAAG+AGG | 0.483787 | 2_3:-8846053 | Msa0276570:intron |
| GTAGTAAATTAATCATATAT+CGG | 0.484803 | 2_3:+8847981 | None:intergenic |
| GACGTTCTCAAACAAGGGAC+AGG | 0.489842 | 2_3:-8847006 | Msa0276570:CDS |
| GTCAAGAAGCAAAGGAATGT+TGG | 0.491438 | 2_3:-8848590 | Msa0276570:CDS |
| GTTCTTTGAAGGTTATAAAG+AGG | 0.497551 | 2_3:-8846728 | Msa0276570:CDS |
| TTTGTGATAGATGGCACAAA+AGG | 0.498165 | 2_3:+8846181 | None:intergenic |
| GTCGACTTCCTAAGAATCAC+AGG | 0.505039 | 2_3:-8845513 | Msa0276570:CDS |
| ACACCTTCAGATTTCTCACT+TGG | 0.506166 | 2_3:+8845724 | None:intergenic |
| AACAAGGGACAGGATTGAGT+TGG | 0.510060 | 2_3:-8846996 | Msa0276570:CDS |
| ACAAACTCCATGTCATGATA+AGG | 0.516847 | 2_3:-8847777 | Msa0276570:CDS |
| TGGTTGTGGTGGCTGTGTGA+TGG | 0.522574 | 2_3:-8847259 | Msa0276570:CDS |
| AGGATTGAGTTGGGAGCCAA+TGG | 0.523462 | 2_3:-8846986 | Msa0276570:CDS |
| TTCAGATTTCTCACTTGGTG+AGG | 0.524957 | 2_3:+8845729 | None:intergenic |
| AGCACATAAGGCTCAAGATA+GGG | 0.524973 | 2_3:-8846233 | Msa0276570:CDS |
| GAGTATTGCGATCCTCGAGC+TGG | 0.528942 | 2_3:-8846583 | Msa0276570:CDS |
| TCAGGCCTTATAACATTTGG+TGG | 0.529368 | 2_3:+8846535 | None:intergenic |
| GTATCACAAGTTATTGGTAG+AGG | 0.529567 | 2_3:+8847369 | None:intergenic |
| ACAAGGGACAGGATTGAGTT+GGG | 0.531143 | 2_3:-8846995 | Msa0276570:CDS |
| TCAGATTTCTCACTTGGTGA+GGG | 0.534163 | 2_3:+8845730 | None:intergenic |
| ATGATAAGGAGCGTATGTAT+TGG | 0.537974 | 2_3:-8847763 | Msa0276570:intron |
| ACCAGAGAAGAGCTTGGCAG+AGG | 0.538284 | 2_3:-8846481 | Msa0276570:CDS |
| CTGAAGCGCATTCTTCCAGA+TGG | 0.539199 | 2_3:-8847234 | Msa0276570:CDS |
| ATATTTGACGTTCTCAAACA+AGG | 0.544534 | 2_3:-8847012 | Msa0276570:CDS |
| CTTTGTGTCACCAGAAAATG+TGG | 0.546636 | 2_3:-8845566 | Msa0276570:CDS |
| GAGATTGAAGCCAAAATACA+AGG | 0.547821 | 2_3:-8847914 | Msa0276570:intron |
| ACTTGGTGAGGGCATCCAGC+AGG | 0.549347 | 2_3:+8845741 | None:intergenic |
| AATGTTATAAGGCCTGACTT+AGG | 0.554124 | 2_3:-8846529 | Msa0276570:CDS |
| TTCTTTGAAGGTTATAAAGA+GGG | 0.554859 | 2_3:-8846727 | Msa0276570:CDS |
| TTCCAAGAGTATTGGAGGAA+CGG | 0.556361 | 2_3:-8847048 | Msa0276570:CDS |
| TATTTGACGTTCTCAAACAA+GGG | 0.560423 | 2_3:-8847011 | Msa0276570:CDS |
| CCAAAAGAACTAGGTGGTTG+TGG | 0.561255 | 2_3:-8847273 | Msa0276570:CDS |
| ACAACTAAGGCATATTTCAA+AGG | 0.561651 | 2_3:+8847485 | None:intergenic |
| AATGCTCTCCAAGTAACCAT+TGG | 0.575828 | 2_3:+8846970 | None:intergenic |
| TGAAACTTCATTTCAAAGCG+TGG | 0.577340 | 2_3:+8847432 | None:intergenic |
| TGATTGCTTGGCTAGTTGTG+AGG | 0.579197 | 2_3:-8846890 | Msa0276570:intron |
| TAACAACTTGGTCAACAGCA+TGG | 0.580070 | 2_3:+8845342 | None:intergenic |
| ATGACAAAGTCAAGAAGCAA+AGG | 0.583092 | 2_3:-8848598 | Msa0276570:CDS |
| AGATGCTCAAGCTAAAAGAC+TGG | 0.588373 | 2_3:-8846678 | Msa0276570:CDS |
| TAAGGCTCAAGATAGGGAAG+AGG | 0.594993 | 2_3:-8846227 | Msa0276570:CDS |
| AAATGGAATGTGAATAGTGA+TGG | 0.595578 | 2_3:-8847312 | Msa0276570:CDS |
| TTGGTGGCAACTTTGCAGCA+AGG | 0.598809 | 2_3:+8846551 | None:intergenic |
| AACGGATAAACTCGTCACAA+TGG | 0.599920 | 2_3:+8846620 | None:intergenic |
| AAAGATACATCAGAAACAGC+TGG | 0.604136 | 2_3:-8846160 | Msa0276570:CDS |
| GGTATCTCAATCTCTGAACA+TGG | 0.604496 | 2_3:+8847800 | None:intergenic |
| GAAGCAGTATTTATACCTGC+TGG | 0.606997 | 2_3:-8845756 | Msa0276570:CDS |
| TAAGGTCACTTGACATCTGA+CGG | 0.610508 | 2_3:+8847091 | None:intergenic |
| TATGGAACCAGAGAAGAGCT+TGG | 0.615802 | 2_3:-8846487 | Msa0276570:CDS |
| TGTGATACAAGTAATTTAGA+GGG | 0.619079 | 2_3:-8847354 | Msa0276570:CDS |
| AAAACAAAAGAATGTTGAGA+CGG | 0.619556 | 2_3:-8847151 | Msa0276570:CDS |
| AAGGCTCAAGATAGGGAAGA+GGG | 0.620022 | 2_3:-8846226 | Msa0276570:CDS |
| AGTTTCTGCTCAAAAGTCAA+AGG | 0.620576 | 2_3:+8845783 | None:intergenic |
| TGAGCATAAGAAGAAGCTAG+AGG | 0.629510 | 2_3:-8845906 | Msa0276570:CDS |
| GAATGTGCTCCAAAAGAACT+AGG | 0.632610 | 2_3:-8847282 | Msa0276570:CDS |
| TCACCAAGTGAGAAATCTGA+AGG | 0.633939 | 2_3:-8845727 | Msa0276570:intron |
| CCATTGTGATATTGCAGACG+CGG | 0.646331 | 2_3:-8846440 | Msa0276570:intron |
| AGCGCATTCTTCCAGATGGG+AGG | 0.648445 | 2_3:-8847230 | Msa0276570:CDS |
| ACTCTTGAAATGGCAAACAA+CGG | 0.653289 | 2_3:+8846602 | None:intergenic |
| TGAAGCGCATTCTTCCAGAT+GGG | 0.654134 | 2_3:-8847233 | Msa0276570:CDS |
| ATACGCTCCTTATCATGACA+TGG | 0.656480 | 2_3:+8847770 | None:intergenic |
| AGGTTGAGAATTCCAGCTCG+AGG | 0.678355 | 2_3:+8846571 | None:intergenic |
| CCGCGTCTGCAATATCACAA+TGG | 0.685598 | 2_3:+8846440 | None:intergenic |
| TGTTGCAAAGAAATACGCAA+CGG | 0.692822 | 2_3:-8847465 | Msa0276570:CDS |
| GGTCTTGTTCAAGATAATGG+AGG | 0.703775 | 2_3:-8846205 | Msa0276570:CDS |
| AAAGAACTAGGTGGTTGTGG+TGG | 0.707130 | 2_3:-8847270 | Msa0276570:CDS |
| AGAGGTGATGAATACATGCA+TGG | 0.707440 | 2_3:-8847399 | Msa0276570:CDS |
| ATAAACTCGTCACAATGGCG+CGG | 0.715284 | 2_3:+8846625 | None:intergenic |
| TCGACTTCCTAAGAATCACA+GGG | 0.715729 | 2_3:-8845512 | Msa0276570:CDS |
| GGCAAGAGAAGACAAACTTG+AGG | 0.737690 | 2_3:-8845491 | Msa0276570:intron |
| AAATTGGTAACAAAAGCTCG+CGG | 0.750601 | 2_3:-8847201 | Msa0276570:CDS |
| TGTGCTCCAAAAGAACTAGG+TGG | 0.792037 | 2_3:-8847279 | Msa0276570:CDS |
| GGTGATGAATACATGCATGG+TGG | 0.798300 | 2_3:-8847396 | Msa0276570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAGAGAAATAAATAT+TGG | + | chr2_3:8847436-8847455 | None:intergenic | 10.0% |
| !! | TTAATTATTGTGTTTATTTA+TGG | - | chr2_3:8848801-8848820 | Msa0276570:CDS | 10.0% |
| !! | TAATTATTGTGTTTATTTAT+GGG | - | chr2_3:8848802-8848821 | Msa0276570:CDS | 10.0% |
| !! | AATTTGTGTTAAATAATTAC+AGG | - | chr2_3:8845734-8845753 | Msa0276570:CDS | 15.0% |
| !! | GTAGTAAATTAATCATATAT+CGG | + | chr2_3:8846236-8846255 | None:intergenic | 15.0% |
| !!! | TCTTTTGTATTTTGTTTTTT+TGG | - | chr2_3:8846648-8846667 | Msa0276570:CDS | 15.0% |
| !! | AATTATTGTGTTTATTTATG+GGG | - | chr2_3:8848803-8848822 | Msa0276570:CDS | 15.0% |
| !!! | ACATGTTTTGATATTTTGTT+TGG | + | chr2_3:8845763-8845782 | None:intergenic | 20.0% |
| !!! | GTTTAAGATGTATTAAAGAT+TGG | - | chr2_3:8845847-8845866 | Msa0276570:intron | 20.0% |
| !!! | TTTTTTTCATTTTTGCACAT+AGG | - | chr2_3:8845967-8845986 | Msa0276570:intron | 20.0% |
| !! | CATTAGAGAAACAAATTTAA+GGG | + | chr2_3:8846117-8846136 | None:intergenic | 20.0% |
| !! | TCATTAGAGAAACAAATTTA+AGG | + | chr2_3:8846118-8846137 | None:intergenic | 20.0% |
| !!! | TAAATTTTCCAAACTATTAC+TGG | - | chr2_3:8846550-8846569 | Msa0276570:CDS | 20.0% |
| !! | AAGTTTCAATACAAAAATAG+AGG | - | chr2_3:8846797-8846816 | Msa0276570:intron | 20.0% |
| !!! | TAAATAGCTTTTTTCCTATA+AGG | + | chr2_3:8847144-8847163 | None:intergenic | 20.0% |
| !!! | TATTTAAATTCCAAGAGTAT+TGG | - | chr2_3:8847158-8847177 | Msa0276570:CDS | 20.0% |
| !! | AAATGATAATTCAAATGTAC+AGG | - | chr2_3:8847297-8847316 | Msa0276570:CDS | 20.0% |
| !! | GAAGAAGATATAAAAATTTC+TGG | - | chr2_3:8847509-8847528 | Msa0276570:CDS | 20.0% |
| !!! | TATTGTTCAATAATTTTGAC+AGG | - | chr2_3:8847885-8847904 | Msa0276570:intron | 20.0% |
| !!! | AAAAATAAAAAGAGCACATA+AGG | - | chr2_3:8847969-8847988 | Msa0276570:CDS | 20.0% |
| !!! | TAATAAAATACCTCTTTTAC+TGG | + | chr2_3:8848174-8848193 | None:intergenic | 20.0% |
| !!! | TCACATATAATCAACATTTT+CGG | - | chr2_3:8848194-8848213 | Msa0276570:intron | 20.0% |
| !! | CAAAAGTCAAATAAAAACAT+TGG | + | chr2_3:8848290-8848309 | None:intergenic | 20.0% |
| !! | ATTATTGTGTTTATTTATGG+GGG | - | chr2_3:8848804-8848823 | Msa0276570:CDS | 20.0% |
| !! | ATCAACAATCTGAGTTTTTA+AGG | - | chr2_3:8845335-8845354 | Msa0276570:CDS | 25.0% |
| ! | ATTACCAAATCAAAGAACTA+TGG | - | chr2_3:8845508-8845527 | Msa0276570:CDS | 25.0% |
| ! | CACAAGAAAATAAAACTTGA+AGG | - | chr2_3:8845544-8845563 | Msa0276570:CDS | 25.0% |
| ! | AGGAATGTTGGATAATATAT+TGG | - | chr2_3:8845636-8845655 | Msa0276570:intron | 25.0% |
| !! | TTCCTTTATGACAACTATTT+TGG | - | chr2_3:8845686-8845705 | Msa0276570:intron | 25.0% |
| ! | AACCAAAATAGTTGTCATAA+AGG | + | chr2_3:8845691-8845710 | None:intergenic | 25.0% |
| ! | TTTGTACAAGATACAAATTG+TGG | + | chr2_3:8845810-8845829 | None:intergenic | 25.0% |
| ! | TATTAACAAATATGTGACCT+TGG | + | chr2_3:8845903-8845922 | None:intergenic | 25.0% |
| ! | ATATCTCCAATTGACATATT+GGG | + | chr2_3:8845996-8846015 | None:intergenic | 25.0% |
| ! | TCAAAAATTAAGCAAAGAGA+TGG | + | chr2_3:8846261-8846280 | None:intergenic | 25.0% |
| !! | TGAAGTTATACCTTGTATTT+TGG | + | chr2_3:8846313-8846332 | None:intergenic | 25.0% |
| ! | ATATGAGAGTTTATTGTTAG+TGG | + | chr2_3:8846386-8846405 | None:intergenic | 25.0% |
| ! | TAACAATAAACTCTCATATC+AGG | - | chr2_3:8846387-8846406 | Msa0276570:intron | 25.0% |
| ! | TGCAACATAGTAAGTATAAA+AGG | + | chr2_3:8846495-8846514 | None:intergenic | 25.0% |
| ! | CATATTTCAAAGGAACATTT+AGG | + | chr2_3:8846722-8846741 | None:intergenic | 25.0% |
| ! | TTACTTGTATCACAAGTTAT+TGG | + | chr2_3:8846854-8846873 | None:intergenic | 25.0% |
| ! | TTGTGATACAAGTAATTTAG+AGG | - | chr2_3:8846859-8846878 | Msa0276570:intron | 25.0% |
| ! | TGTGATACAAGTAATTTAGA+GGG | - | chr2_3:8846860-8846879 | Msa0276570:intron | 25.0% |
| ! | ATGTTGAGATATTTACCAAA+TGG | - | chr2_3:8846885-8846904 | Msa0276570:intron | 25.0% |
| ! | AAAACAAAAGAATGTTGAGA+CGG | - | chr2_3:8847063-8847082 | Msa0276570:CDS | 25.0% |
| ! | TTTCGTAGTTAAATTTCCTT+TGG | - | chr2_3:8847352-8847371 | Msa0276570:CDS | 25.0% |
| !! | TTCTTTGAAGGTTATAAAGA+GGG | - | chr2_3:8847487-8847506 | Msa0276570:CDS | 25.0% |
| !! | ACATTTTCAAACTCATCATA+AGG | + | chr2_3:8847565-8847584 | None:intergenic | 25.0% |
| ! | TTTCAATTTCAACGCTATAT+TGG | - | chr2_3:8847829-8847848 | Msa0276570:intron | 25.0% |
| !!! | TATTTTGACTCATATAACTG+AGG | - | chr2_3:8847912-8847931 | Msa0276570:intron | 25.0% |
| ! | TAAAAACATTGGTCATGAAT+AGG | + | chr2_3:8848279-8848298 | None:intergenic | 25.0% |
| ! | CAAGATTCTTAATCAATTAC+AGG | - | chr2_3:8848401-8848420 | Msa0276570:intron | 25.0% |
| !!! | ACATACATGTACTTTTAAAG+AGG | + | chr2_3:8848536-8848555 | None:intergenic | 25.0% |
| ! | CACAATAATTAAGCAAAGTT+TGG | + | chr2_3:8848793-8848812 | None:intergenic | 25.0% |
| !! | GTGATATTTTTCTATGAAAC+AGG | - | chr2_3:8848833-8848852 | Msa0276570:CDS | 25.0% |
| ATCAAAATGCTCAAGAGATT+CGG | - | chr2_3:8845441-8845460 | Msa0276570:intron | 30.0% | |
| AAGAAGAGAAGAGTTGAAAA+TGG | - | chr2_3:8845472-8845491 | Msa0276570:intron | 30.0% | |
| AGTACCATAGTTCTTTGATT+TGG | + | chr2_3:8845515-8845534 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGAAGAAGATG+AGG | - | chr2_3:8845576-8845595 | Msa0276570:CDS | 30.0% |
| ACATCTAAATAACCATTCCA+AGG | - | chr2_3:8845883-8845902 | Msa0276570:intron | 30.0% | |
| TATCTCCAATTGACATATTG+GGG | + | chr2_3:8845995-8846014 | None:intergenic | 30.0% | |
| GATATCTCCAATTGACATAT+TGG | + | chr2_3:8845997-8846016 | None:intergenic | 30.0% | |
| CATTGCAATTGCAATTCTTA+CGG | + | chr2_3:8846040-8846059 | None:intergenic | 30.0% | |
| AATGTTTGCTTGTGTTCAAA+AGG | - | chr2_3:8846056-8846075 | Msa0276570:CDS | 30.0% | |
| ! | ATTTAGGACAGCTTCTATAA+AGG | + | chr2_3:8846706-8846725 | None:intergenic | 30.0% |
| ACAACTAAGGCATATTTCAA+AGG | + | chr2_3:8846732-8846751 | None:intergenic | 30.0% | |
| GTATTTCTTTGCAACAACTA+AGG | + | chr2_3:8846745-8846764 | None:intergenic | 30.0% | |
| ATCACTATTCACATTCCATT+TGG | + | chr2_3:8846903-8846922 | None:intergenic | 30.0% | |
| AAATGGAATGTGAATAGTGA+TGG | - | chr2_3:8846902-8846921 | Msa0276570:CDS | 30.0% | |
| !! | TTAAATTCCAAGAGTATTGG+AGG | - | chr2_3:8847161-8847180 | Msa0276570:CDS | 30.0% |
| AGAACGTCAAATATTAGAAC+AGG | + | chr2_3:8847196-8847215 | None:intergenic | 30.0% | |
| ATATTTGACGTTCTCAAACA+AGG | - | chr2_3:8847202-8847221 | Msa0276570:CDS | 30.0% | |
| TATTTGACGTTCTCAAACAA+GGG | - | chr2_3:8847203-8847222 | Msa0276570:CDS | 30.0% | |
| TTCTCTTTATAAACCTTTGC+AGG | - | chr2_3:8847444-8847463 | Msa0276570:CDS | 30.0% | |
| CTTTATAACCTTCAAAGAAC+TGG | + | chr2_3:8847486-8847505 | None:intergenic | 30.0% | |
| ! | GTTCTTTGAAGGTTATAAAG+AGG | - | chr2_3:8847486-8847505 | Msa0276570:CDS | 30.0% |
| ! | TTTTCAAACTCATCATAAGG+TGG | + | chr2_3:8847562-8847581 | None:intergenic | 30.0% |
| ! | CCATAAGCAATGTAAGTTTT+TGG | + | chr2_3:8847712-8847731 | None:intergenic | 30.0% |
| CCAAAAACTTACATTGCTTA+TGG | - | chr2_3:8847709-8847728 | Msa0276570:intron | 30.0% | |
| ! | GATGTATCTTTTGTGATAGA+TGG | + | chr2_3:8848045-8848064 | None:intergenic | 30.0% |
| GAAAACACTCGAAAGAATTT+AGG | - | chr2_3:8848133-8848152 | Msa0276570:intron | 30.0% | |
| TTATTGTTCTCCAGTAAAAG+AGG | - | chr2_3:8848161-8848180 | Msa0276570:intron | 30.0% | |
| AACCTAAGAAACAAAGAAGT+TGG | + | chr2_3:8848250-8848269 | None:intergenic | 30.0% | |
| ! | ATGCATATATCCACATTTTC+TGG | + | chr2_3:8848661-8848680 | None:intergenic | 30.0% |
| TGGAATTCACATCAAAAGAA+AGG | + | chr2_3:8848773-8848792 | None:intergenic | 30.0% | |
| TGACCAAGTTGTTAAAGAAT+TGG | - | chr2_3:8848881-8848900 | Msa0276570:CDS | 30.0% | |
| CTTCCAATTCTTTAACAACT+TGG | + | chr2_3:8848887-8848906 | None:intergenic | 30.0% | |
| AAAGAATTGGAAGCTTTCAT+TGG | - | chr2_3:8848894-8848913 | Msa0276570:CDS | 30.0% | |
| ATGACAAAGTCAAGAAGCAA+AGG | - | chr2_3:8845616-8845635 | Msa0276570:intron | 35.0% | |
| ACAAATATGTGACCTTGGAA+TGG | + | chr2_3:8845898-8845917 | None:intergenic | 35.0% | |
| TTGCAATTCTTACGGCAAAA+GGG | + | chr2_3:8846032-8846051 | None:intergenic | 35.0% | |
| ATTGCAATTCTTACGGCAAA+AGG | + | chr2_3:8846033-8846052 | None:intergenic | 35.0% | |
| GTGTTCAAAAGGAATGATCA+AGG | - | chr2_3:8846067-8846086 | Msa0276570:CDS | 35.0% | |
| GAGATTGAAGCCAAAATACA+AGG | - | chr2_3:8846300-8846319 | Msa0276570:CDS | 35.0% | |
| TTATCATGACATGGAGTTTG+TGG | + | chr2_3:8846438-8846457 | None:intergenic | 35.0% | |
| ACAAACTCCATGTCATGATA+AGG | - | chr2_3:8846437-8846456 | Msa0276570:intron | 35.0% | |
| ! | ATGATAAGGAGCGTATGTAT+TGG | - | chr2_3:8846451-8846470 | Msa0276570:CDS | 35.0% |
| CGTCAATACCAGTAATAGTT+TGG | + | chr2_3:8846561-8846580 | None:intergenic | 35.0% | |
| TGTTGCAAAGAAATACGCAA+CGG | - | chr2_3:8846749-8846768 | Msa0276570:CDS | 35.0% | |
| TGAAACTTCATTTCAAAGCG+TGG | + | chr2_3:8846785-8846804 | None:intergenic | 35.0% | |
| GTATCACAAGTTATTGGTAG+AGG | + | chr2_3:8846848-8846867 | None:intergenic | 35.0% | |
| AATTTAGATATCCTCCCATC+TGG | + | chr2_3:8846998-8847017 | None:intergenic | 35.0% | |
| AGATGGGAGGATATCTAAAT+TGG | - | chr2_3:8846997-8847016 | Msa0276570:CDS | 35.0% | |
| ! | AAATTGGTAACAAAAGCTCG+CGG | - | chr2_3:8847013-8847032 | Msa0276570:CDS | 35.0% |
| ! | GTGTCAATTTTTACCTGCAA+AGG | + | chr2_3:8847460-8847479 | None:intergenic | 35.0% |
| ACTCTTGAAATGGCAAACAA+CGG | + | chr2_3:8847615-8847634 | None:intergenic | 35.0% | |
| AGTTGCCACCAAATGTTATA+AGG | - | chr2_3:8847674-8847693 | Msa0276570:intron | 35.0% | |
| ! | AAGTCAGGCCTTATAACATT+TGG | + | chr2_3:8847685-8847704 | None:intergenic | 35.0% |
| AATGTTATAAGGCCTGACTT+AGG | - | chr2_3:8847685-8847704 | Msa0276570:intron | 35.0% | |
| !! | TAAGTTTTTGGACCTAAGTC+AGG | + | chr2_3:8847700-8847719 | None:intergenic | 35.0% |
| TTTGTGATAGATGGCACAAA+AGG | + | chr2_3:8848036-8848055 | None:intergenic | 35.0% | |
| AAAGATACATCAGAAACAGC+TGG | - | chr2_3:8848054-8848073 | Msa0276570:intron | 35.0% | |
| ACTTTGCAGTATCTTCTCTT+CGG | + | chr2_3:8848098-8848117 | None:intergenic | 35.0% | |
| ! | CACCAACTTCTTTGTTTCTT+AGG | - | chr2_3:8848245-8848264 | Msa0276570:intron | 35.0% |
| AGTTTCTGCTCAAAAGTCAA+AGG | + | chr2_3:8848434-8848453 | None:intergenic | 35.0% | |
| ! | TTGACTTTTGAGCAGAAACT+TGG | - | chr2_3:8848434-8848453 | Msa0276570:intron | 35.0% |
| GTCAAGAAGCAAAGGAATGT+TGG | - | chr2_3:8845624-8845643 | Msa0276570:intron | 40.0% | |
| ATGTCATCAGTGCTTGAGAA+AGG | - | chr2_3:8845779-8845798 | Msa0276570:CDS | 40.0% | |
| ATCAGTGCTTGAGAAAGGAT+AGG | - | chr2_3:8845784-8845803 | Msa0276570:CDS | 40.0% | |
| AGGTACCCCAATATGTCAAT+TGG | - | chr2_3:8845987-8846006 | Msa0276570:intron | 40.0% | |
| TGCAATTCTTACGGCAAAAG+GGG | + | chr2_3:8846031-8846050 | None:intergenic | 40.0% | |
| GGTATCTCAATCTCTGAACA+TGG | + | chr2_3:8846417-8846436 | None:intergenic | 40.0% | |
| ATACGCTCCTTATCATGACA+TGG | + | chr2_3:8846447-8846466 | None:intergenic | 40.0% | |
| AGAGGTGATGAATACATGCA+TGG | - | chr2_3:8846815-8846834 | Msa0276570:intron | 40.0% | |
| GAATGTGCTCCAAAAGAACT+AGG | - | chr2_3:8846932-8846951 | Msa0276570:CDS | 40.0% | |
| TAAGGTCACTTGACATCTGA+CGG | + | chr2_3:8847126-8847145 | None:intergenic | 40.0% | |
| CAGATGTCAAGTGACCTTAT+AGG | - | chr2_3:8847127-8847146 | Msa0276570:CDS | 40.0% | |
| !! | TTCCAAGAGTATTGGAGGAA+CGG | - | chr2_3:8847166-8847185 | Msa0276570:CDS | 40.0% |
| AATGCTCTCCAAGTAACCAT+TGG | + | chr2_3:8847247-8847266 | None:intergenic | 40.0% | |
| ! | TGTACAGGCTATTGATTGCT+TGG | - | chr2_3:8847312-8847331 | Msa0276570:CDS | 40.0% |
| GTAAGAACGAACATCACCAA+AGG | + | chr2_3:8847371-8847390 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGCTTGAGCATCTC+TGG | + | chr2_3:8847535-8847554 | None:intergenic | 40.0% |
| AGATGCTCAAGCTAAAAGAC+TGG | - | chr2_3:8847536-8847555 | Msa0276570:CDS | 40.0% | |
| AACGGATAAACTCGTCACAA+TGG | + | chr2_3:8847597-8847616 | None:intergenic | 40.0% | |
| GGATCGCAATACTCTTGAAA+TGG | + | chr2_3:8847625-8847644 | None:intergenic | 40.0% | |
| ! | TCAGGCCTTATAACATTTGG+TGG | + | chr2_3:8847682-8847701 | None:intergenic | 40.0% |
| TTGGTGCGACAAGTATAAGA+TGG | - | chr2_3:8847848-8847867 | Msa0276570:intron | 40.0% | |
| AGCACATAAGGCTCAAGATA+GGG | - | chr2_3:8847981-8848000 | Msa0276570:CDS | 40.0% | |
| !! | GAGGGTCTTGTTCAAGATAA+TGG | - | chr2_3:8848006-8848025 | Msa0276570:CDS | 40.0% |
| !! | GGTCTTGTTCAAGATAATGG+AGG | - | chr2_3:8848009-8848028 | Msa0276570:CDS | 40.0% |
| TGAGCATAAGAAGAAGCTAG+AGG | - | chr2_3:8848308-8848327 | Msa0276570:intron | 40.0% | |
| AAGAAGCTAGAGGAAGAGTT+TGG | - | chr2_3:8848318-8848337 | Msa0276570:intron | 40.0% | |
| GAAGCAGTATTTATACCTGC+TGG | - | chr2_3:8848458-8848477 | Msa0276570:intron | 40.0% | |
| ! | TCAGATTTCTCACTTGGTGA+GGG | + | chr2_3:8848487-8848506 | None:intergenic | 40.0% |
| ! | TTCAGATTTCTCACTTGGTG+AGG | + | chr2_3:8848488-8848507 | None:intergenic | 40.0% |
| TCACCAAGTGAGAAATCTGA+AGG | - | chr2_3:8848487-8848506 | Msa0276570:intron | 40.0% | |
| ACACCTTCAGATTTCTCACT+TGG | + | chr2_3:8848493-8848512 | None:intergenic | 40.0% | |
| CTTTGTGTCACCAGAAAATG+TGG | - | chr2_3:8848648-8848667 | Msa0276570:CDS | 40.0% | |
| TCGACTTCCTAAGAATCACA+GGG | - | chr2_3:8848702-8848721 | Msa0276570:CDS | 40.0% | |
| TAACAACTTGGTCAACAGCA+TGG | + | chr2_3:8848875-8848894 | None:intergenic | 40.0% | |
| CAATTGGAGATATCGCAGAG+AGG | - | chr2_3:8846003-8846022 | Msa0276570:intron | 45.0% | |
| GGTGATGAATACATGCATGG+TGG | - | chr2_3:8846818-8846837 | Msa0276570:intron | 45.0% | |
| TGTGCTCCAAAAGAACTAGG+TGG | - | chr2_3:8846935-8846954 | Msa0276570:CDS | 45.0% | |
| !! | CCACAACCACCTAGTTCTTT+TGG | + | chr2_3:8846944-8846963 | None:intergenic | 45.0% |
| CCAAAAGAACTAGGTGGTTG+TGG | - | chr2_3:8846941-8846960 | Msa0276570:CDS | 45.0% | |
| AAAGAACTAGGTGGTTGTGG+TGG | - | chr2_3:8846944-8846963 | Msa0276570:CDS | 45.0% | |
| TGAAGCGCATTCTTCCAGAT+GGG | - | chr2_3:8846981-8847000 | Msa0276570:CDS | 45.0% | |
| AACAAGGGACAGGATTGAGT+TGG | - | chr2_3:8847218-8847237 | Msa0276570:CDS | 45.0% | |
| ACAAGGGACAGGATTGAGTT+GGG | - | chr2_3:8847219-8847238 | Msa0276570:CDS | 45.0% | |
| ! | TGATTGCTTGGCTAGTTGTG+AGG | - | chr2_3:8847324-8847343 | Msa0276570:CDS | 45.0% |
| ATAAACTCGTCACAATGGCG+CGG | + | chr2_3:8847592-8847611 | None:intergenic | 45.0% | |
| TATGGAACCAGAGAAGAGCT+TGG | - | chr2_3:8847727-8847746 | Msa0276570:intron | 45.0% | |
| CCATTGTGATATTGCAGACG+CGG | - | chr2_3:8847774-8847793 | Msa0276570:CDS | 45.0% | |
| GAGCACATAAGGCTCAAGAT+AGG | - | chr2_3:8847980-8847999 | Msa0276570:CDS | 45.0% | |
| TAAGGCTCAAGATAGGGAAG+AGG | - | chr2_3:8847987-8848006 | Msa0276570:CDS | 45.0% | |
| AAGGCTCAAGATAGGGAAGA+GGG | - | chr2_3:8847988-8848007 | Msa0276570:CDS | 45.0% | |
| AGAAACAGCTGGTGCACTTT+GGG | - | chr2_3:8848065-8848084 | Msa0276570:intron | 45.0% | |
| ! | GTCGACTTCCTAAGAATCAC+AGG | - | chr2_3:8848701-8848720 | Msa0276570:CDS | 45.0% |
| TCTCTTGCCCTGTGATTCTT+AGG | + | chr2_3:8848712-8848731 | None:intergenic | 45.0% | |
| GGCAAGAGAAGACAAACTTG+AGG | - | chr2_3:8848723-8848742 | Msa0276570:CDS | 45.0% | |
| !! | AAGATTAAAATTTATATAAA+AGG | - | chr2_3:8845304-8845323 | Msa0276570:CDS | 5.0% |
| CTGAAGCGCATTCTTCCAGA+TGG | - | chr2_3:8846980-8846999 | Msa0276570:CDS | 50.0% | |
| CACCGTTCCTCCAATACTCT+TGG | + | chr2_3:8847171-8847190 | None:intergenic | 50.0% | |
| GACGTTCTCAAACAAGGGAC+AGG | - | chr2_3:8847208-8847227 | Msa0276570:CDS | 50.0% | |
| !! | AGGATTGAGTTGGGAGCCAA+TGG | - | chr2_3:8847228-8847247 | Msa0276570:CDS | 50.0% |
| GTTGGGAGCCAATGGTTACT+TGG | - | chr2_3:8847236-8847255 | Msa0276570:CDS | 50.0% | |
| GACACTCGCCAGTTCTTTGA+AGG | - | chr2_3:8847475-8847494 | Msa0276570:CDS | 50.0% | |
| AGGTTGAGAATTCCAGCTCG+AGG | + | chr2_3:8847646-8847665 | None:intergenic | 50.0% | |
| ! | TTGGTGGCAACTTTGCAGCA+AGG | + | chr2_3:8847666-8847685 | None:intergenic | 50.0% |
| CCGCGTCTGCAATATCACAA+TGG | + | chr2_3:8847777-8847796 | None:intergenic | 50.0% | |
| CAGAAACAGCTGGTGCACTT+TGG | - | chr2_3:8848064-8848083 | Msa0276570:intron | 50.0% | |
| TGGTTGTGGTGGCTGTGTGA+TGG | - | chr2_3:8846955-8846974 | Msa0276570:CDS | 55.0% | |
| AGCGCATTCTTCCAGATGGG+AGG | - | chr2_3:8846984-8847003 | Msa0276570:CDS | 55.0% | |
| ! | GAGTATTGCGATCCTCGAGC+TGG | - | chr2_3:8847631-8847650 | Msa0276570:intron | 55.0% |
| ACCAGAGAAGAGCTTGGCAG+AGG | - | chr2_3:8847733-8847752 | Msa0276570:intron | 55.0% | |
| TCCTCTGCCAAGCTCTTCTC+TGG | + | chr2_3:8847737-8847756 | None:intergenic | 55.0% | |
| !! | ACTTGGTGAGGGCATCCAGC+AGG | + | chr2_3:8848476-8848495 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 8845301 | 8848935 | 8845301 | ID=Msa0276570;Name=Msa0276570 |
| chr2_3 | mRNA | 8845301 | 8848935 | 8845301 | ID=Msa0276570-mRNA-1;Parent=Msa0276570;Name=Msa0276570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|10|0|729 |
| chr2_3 | exon | 8848579 | 8848935 | 8848579 | ID=Msa0276570-mRNA-1:exon:3995;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8847915 | 8848047 | 8847915 | ID=Msa0276570-mRNA-1:exon:3994;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8847764 | 8847827 | 8847764 | ID=Msa0276570-mRNA-1:exon:3993;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8846891 | 8847560 | 8846891 | ID=Msa0276570-mRNA-1:exon:3992;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8846441 | 8846770 | 8846441 | ID=Msa0276570-mRNA-1:exon:3991;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8846054 | 8846329 | 8846054 | ID=Msa0276570-mRNA-1:exon:3990;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8845897 | 8845969 | 8845897 | ID=Msa0276570-mRNA-1:exon:3989;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8845728 | 8845813 | 8845728 | ID=Msa0276570-mRNA-1:exon:3988;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8845492 | 8845611 | 8845492 | ID=Msa0276570-mRNA-1:exon:3987;Parent=Msa0276570-mRNA-1 |
| chr2_3 | exon | 8845301 | 8845381 | 8845301 | ID=Msa0276570-mRNA-1:exon:3986;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8848579 | 8848935 | 8848579 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8847915 | 8848047 | 8847915 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8847764 | 8847827 | 8847764 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8846891 | 8847560 | 8846891 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8846441 | 8846770 | 8846441 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8846054 | 8846329 | 8846054 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8845897 | 8845969 | 8845897 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8845728 | 8845813 | 8845728 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8845492 | 8845611 | 8845492 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| chr2_3 | CDS | 8845301 | 8845381 | 8845301 | ID=Msa0276570-mRNA-1:cds;Parent=Msa0276570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
