AlfalfaGEDB | Msa0197010

M. sativa cultivar zhongmu-4 / Msa0197010

KEGG: K15601|K21989
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0197010	RHN72570.1	72.667	150	20	3	1	130	10	158	2.96e-46	189
Msa0197010	RHN72570.1	87.102	628	58	4	111	728	213	827	0.0	1079

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0197010	sp\|Q9SSE9\|JMJ25_ARATH	47.791	498	214	9	255	721	410	892	2.10e-140	441
Msa0197010	sp\|Q9SSE9\|JMJ25_ARATH	44.262	122	67	1	119	239	219	340	9.14e-22	104

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0197010	A0A396J3U9	72.667	150	20	3	1	130	10	158	1.41e-46	189
Msa0197010	A0A396J3U9	87.102	628	58	4	111	728	213	827	0.0	1079

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0197010	TR	Jumonji

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016570	Msa0197010	0.826727	2.314157e-54	-8.615850e-47
Msa0016580	Msa0197010	0.807501	4.901444e-50	-8.615850e-47
Msa0110270	Msa0197010	0.800785	1.224738e-48	-8.615850e-47
Msa0197010	Msa0231000	0.800458	1.427711e-48	-8.615850e-47
Msa0197010	Msa0238820	0.845573	3.732916e-59	-8.615850e-47
Msa0197010	Msa0238840	0.867388	1.419936e-65	-8.615850e-47
Msa0197010	Msa0267000	0.825433	4.699317e-54	-8.615850e-47
Msa0197010	Msa0267010	0.831100	2.020972e-55	-8.615850e-47
Msa0197010	Msa0270520	0.803382	3.580224e-49	-8.615850e-47
Msa0197010	Msa0276570	0.888803	4.268717e-73	-8.615850e-47

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0197010	MtrunA17_Chr2g0289121	87.102	628	58	4	111	728	213	827	0.0	1079
Msa0197010	MtrunA17_Chr2g0289121	72.667	150	20	3	1	130	10	158	2.72e-50	189
Msa0197010	MtrunA17_Chr4g0075261	61.538	663	193	10	110	726	224	870	0.0	789
Msa0197010	MtrunA17_Chr2g0289031	83.586	396	65	0	329	724	2	397	0.0	670
Msa0197010	MtrunA17_Chr1g0211711	49.317	659	276	12	110	720	400	1048	0.0	583
Msa0197010	MtrunA17_Chr1g0183311	48.869	663	254	12	135	720	225	879	0.0	575
Msa0197010	MtrunA17_Chr5g0426961	48.750	640	295	9	110	720	197	832	0.0	560
Msa0197010	MtrunA17_Chr5g0420361	47.179	638	263	18	131	704	152	779	7.88e-173	515
Msa0197010	MtrunA17_Chr6g0472441	41.679	655	277	18	120	704	82	701	9.26e-148	448
Msa0197010	MtrunA17_Chr1g0211661	44.202	595	280	12	110	663	282	865	2.83e-144	444

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0197010	AT1G11950.1	55.556	630	254	8	111	723	251	871	0.0	705
Msa0197010	AT1G11950.3	55.556	630	254	8	111	723	251	871	0.0	705
Msa0197010	AT1G62310.1	56.322	609	243	5	118	704	271	878	0.0	678
Msa0197010	AT1G11950.2	53.036	560	237	8	111	653	251	801	0.0	588
Msa0197010	AT3G07610.1	47.791	498	214	9	255	721	410	892	2.14e-141	441
Msa0197010	AT3G07610.1	44.262	122	67	1	119	239	219	340	9.30e-23	104
Msa0197010	AT3G07610.3	45.068	517	222	10	255	721	410	914	8.84e-132	416
Msa0197010	AT3G07610.3	44.262	122	67	1	119	239	219	340	8.29e-23	104
Msa0197010	AT4G00990.3	43.649	433	208	9	130	539	154	573	1.91e-107	345
Msa0197010	AT4G00990.3	59.375	96	39	0	574	669	683	778	1.53e-30	129

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 117 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAAGAATGTTGAGA+CGG	0.619556	2_1:-14635159	Msa0197010:CDS
AAAGAACTAGGTGGTTGTGG+TGG	0.707130	2_1:-14635278	Msa0197010:CDS
AAAGAATTGGAAGCTTTCAT+TGG	0.399008	2_1:-14633330	Msa0197010:CDS
AAAGATACATCAGAAACAGC+TGG	0.604136	2_1:-14634168	Msa0197010:CDS
AAATGATAATTCAAATGTAC+AGG	0.476218	2_1:-14634925	Msa0197010:CDS
AAATGGAATGTGAATAGTGA+TGG	0.595578	2_1:-14635320	Msa0197010:CDS
AAATTGGTAACAAAAGCTCA+CGG	0.688434	2_1:-14635209	Msa0197010:CDS
AACAAGGGACAGGATTGAGT+TGG	0.510060	2_1:-14635004	Msa0197010:CDS
AAGAAGAGAAGAGTTGAAAA+TGG	0.299932	2_1:-14636749	Msa0197010:CDS
AAGAAGCTGGAGGAAGAGTT+TGG	0.302446	2_1:-14633904	Msa0197010:intron

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCAAAATGCTCAAGAGATT+CGG	-	chr2_1:14633451-14633470	Msa0197010:intron	30.0%
AAGAAGAGAAGAGTTGAAAA+TGG	-	chr2_1:14633482-14633501	Msa0197010:intron	30.0%
AGTACCATAGTTCTTTGATT+TGG	+	chr2_1:14633525-14633544	None:intergenic	30.0%
ACATCTAAATAACCATTCCA+AGG	-	chr2_1:14633893-14633912	Msa0197010:intron	30.0%
TATCTCCAATTGACATATTG+GGG	+	chr2_1:14634004-14634023	None:intergenic	30.0%
GATATCTCCAATTGACATAT+TGG	+	chr2_1:14634006-14634025	None:intergenic	30.0%
CATTGCAATTGCAATTCTTA+CGG	+	chr2_1:14634049-14634068	None:intergenic	30.0%
AATGTTTGCTTGTGTTCAAA+AGG	-	chr2_1:14634065-14634084	Msa0197010:CDS	30.0%
ACAACTAAGGCATATTTCAA+AGG	+	chr2_1:14634741-14634760	None:intergenic	30.0%
GTATTTCTTTGCAACAACTA+AGG	+	chr2_1:14634754-14634773	None:intergenic	30.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	14633311	14636942	14633311	ID=Msa0197010;Name=Msa0197010
chr2_1	mRNA	14633311	14636942	14633311	ID=Msa0197010-mRNA-1;Parent=Msa0197010;Name=Msa0197010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|10\|0\|729
chr2_1	exon	14636586	14636942	14636586	ID=Msa0197010-mRNA-1:exon:6204;Parent=Msa0197010-mRNA-1
chr2_1	exon	14635923	14636055	14635923	ID=Msa0197010-mRNA-1:exon:6203;Parent=Msa0197010-mRNA-1
chr2_1	exon	14635772	14635835	14635772	ID=Msa0197010-mRNA-1:exon:6202;Parent=Msa0197010-mRNA-1
chr2_1	exon	14634899	14635568	14634899	ID=Msa0197010-mRNA-1:exon:6201;Parent=Msa0197010-mRNA-1
chr2_1	exon	14634449	14634778	14634449	ID=Msa0197010-mRNA-1:exon:6200;Parent=Msa0197010-mRNA-1
chr2_1	exon	14634062	14634337	14634062	ID=Msa0197010-mRNA-1:exon:6199;Parent=Msa0197010-mRNA-1
chr2_1	exon	14633905	14633977	14633905	ID=Msa0197010-mRNA-1:exon:6198;Parent=Msa0197010-mRNA-1
chr2_1	exon	14633740	14633825	14633740	ID=Msa0197010-mRNA-1:exon:6197;Parent=Msa0197010-mRNA-1
chr2_1	exon	14633504	14633623	14633504	ID=Msa0197010-mRNA-1:exon:6196;Parent=Msa0197010-mRNA-1
chr2_1	exon	14633311	14633391	14633311	ID=Msa0197010-mRNA-1:exon:6195;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14636586	14636942	14636586	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14635923	14636055	14635923	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14635772	14635835	14635772	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14634899	14635568	14634899	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14634449	14634778	14634449	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14634062	14634337	14634062	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14633905	14633977	14633905	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14633740	14633825	14633740	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14633504	14633623	14633504	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1
chr2_1	CDS	14633311	14633391	14633311	ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1

Gene Sequence

>Msa0197010

ATGAAGATTAAAATTTATATAAAAGGAAACTCAAATCAACAATCTGAGTTTTTAAGGAACTCAAAATCAGTTGAAAGAAAAGTTTCAGCTTCTGCAGCAGAATCGTCACAACAAAATATTGATACAAATCAAAACAAAACATCAAAATGCTCAAGAGATTCGGCAAATTCAAAGAAGAGAAGAGTTGAAAATGGTTGTAAACTTGATATTACCAAATCAAAGAACTATGGTACTACATCAAAACACAAGAAAATAAAACTTGAAGGCAGTAACAATTTTGAAGATGAAGAAGATGAGGAAGTTATATTTGTTTCAATGACAAAGTCAAGAAGCAAAGGAATGTTGGATAATATATTGACGTCTAACAAGAACATCACAGATTGTGAAAAAATTCATCATCACCGATATATGATTAATTTACTACTTCCATCTCTTTGCTTAATTTTTGAAGAGCAATGTCAAGAACAAGAGATTGAAGCCAAAATACAAGGCAAACCATGTTCAGAGATTGAGATACCACAAACTCCATGTCATGATAAGGAGCGTATGTATTGTGATCATTGTGCTACTTCAATTGTTGACCTTTATAGAAGCTGTCCTAAATGTTCCTTTGAAATATGCCTTAGTTGTTGCAAAGAAATACGCAACGGAAGTATCACACCACGCTTTGAAATGAAGTTTCAATACAAAAATAGAGGTGATGAATACATGCATGGTGGTGATCCTCTACCAATAACTTGTGATACAAGTAATTTAGAGGGTCATGTTGAGATATTTACCAAATGGAATGTGAATAGTGATGGAAGTGTTGAATGTGCTCCAAAAGAACTAGGTGGTTGTGGTGGCTGTGTGATGGAGCTGAAGCGCATTCTTCCAGATGGGAGGATATCTAAATTGGTAACAAAAGCTCACGGTATGAAGAAACATTTTTGCATAATTGAAAAACAAAAGAATGTTGAGACGGAAAGAATCTCAAGTTGCAGCAATTACAATGACATATACCGTCAGATGTCAAGTGACCTTATAGGAAAAAAGCTATTTAAATTCCAAGAGTATTGGAGGAACGGTGTACCTGTTCTAATATTTGACGTTCTCAAACAAGGGACAGGATTGAGTTGGGAGCCAATGGTTACTTGGAGAGCATTGCGTGTAAATTCATCTTCAAGTGTCAGCTCAAATGATAATTCAAATGTACAGGCTATTGATTGCTTGGCTAGTTGTGAGGTAAAAATTGACACTCGCCAGTTCTTTGAAGGTTATAAAGAGGGAAGAAGATATAAAAATTTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCACCTTATGATGAGTTTGAAAATGTCTTGCCGCGACATTGTGACGAGTTTATCCGTTGTTTGCCATTTCAAGAGTATTGCGATCCTCGAGCTGGAATTCTCAACCTTGCTGCAAAGTTGCCACCAAATGTTATAAGGCCTGACTTAGGTCCAAAAACTTACATTGCTTATGGAACCAGAGAAGAGCTTGGCAGAGGAGATTCTGTTACAAAACTCCATTGTGATATTGCAGACGCGGTCAATATTTTGACTCATATAACTGAGGTGAAATTAACAGATGAACAACTTTATGCTATTAAAAAAATAAAAAGAGCACATAAGGCTCAAGATAGGGAAGAGGGTCTTGTTCAAGATAATGGAGGTCCTTTTGTGCCATCTATCACAAAAGATACATCAGAAACAGCTGGTGCACTTTGGGACATATTCCGAAGAGAAGATACTGCAAAGTTAGAAGCATATCTTAGAAAACATTCCAAAGAATTTAGGCATACTTATTGTTCTCCAGTAAAAGAGGTTATTCATCCTATTCATGACCAATGCTTTTATTTGACTTTTGAGCATAAGAAGAAGCTGGAGGAAGAGTTTGGTGTAGTACCTTTGACTTTTGAGCAGAAACTTGGTGAAGCAGTATTTATACCTGCTGGATGCCCTCACCAAGTGAGAAATCTGAAGTCATGCACAAAAGTTGCAGTAGACTTTGTGTCACCAGAAAATGTGGATATATGCATGCTTTTAACTGAAGAGTTTCGTCGACTTCCTAAGAATCACAGGGCAAGAGAAGACAAACTTGAGGTAAAAAAGATGATAATCCATGCTGTTGACCAAGTTGTTAAAGAATTGGAAGCTTTCATTGGATGCTCATCACTCGACTGA

Protein sequence

>Msa0197010

MKIKIYIKGNSNQQSEFLRNSKSVERKVSASAAESSQQNIDTNQNKTSKCSRDSANSKKRRVENGCKLDITKSKNYGTTSKHKKIKLEGSNNFEDEEDEEVIFVSMTKSRSKGMLDNILTSNKNITDCEKIHHHRYMINLLLPSLCLIFEEQCQEQEIEAKIQGKPCSEIEIPQTPCHDKERMYCDHCATSIVDLYRSCPKCSFEICLSCCKEIRNGSITPRFEMKFQYKNRGDEYMHGGDPLPITCDTSNLEGHVEIFTKWNVNSDGSVECAPKELGGCGGCVMELKRILPDGRISKLVTKAHGMKKHFCIIEKQKNVETERISSCSNYNDIYRQMSSDLIGKKLFKFQEYWRNGVPVLIFDVLKQGTGLSWEPMVTWRALRVNSSSSVSSNDNSNVQAIDCLASCEVKIDTRQFFEGYKEGRRYKNFWPEMLKLKDWPPYDEFENVLPRHCDEFIRCLPFQEYCDPRAGILNLAAKLPPNVIRPDLGPKTYIAYGTREELGRGDSVTKLHCDIADAVNILTHITEVKLTDEQLYAIKKIKRAHKAQDREEGLVQDNGGPFVPSITKDTSETAGALWDIFRREDTAKLEAYLRKHSKEFRHTYCSPVKEVIHPIHDQCFYLTFEHKKKLEEEFGVVPLTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDICMLLTEEFRRLPKNHRAREDKLEVKKMIIHAVDQVVKELEAFIGCSSLD*