Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197010 | RHN72570.1 | 72.667 | 150 | 20 | 3 | 1 | 130 | 10 | 158 | 2.96e-46 | 189 |
| Msa0197010 | RHN72570.1 | 87.102 | 628 | 58 | 4 | 111 | 728 | 213 | 827 | 0.0 | 1079 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197010 | sp|Q9SSE9|JMJ25_ARATH | 47.791 | 498 | 214 | 9 | 255 | 721 | 410 | 892 | 2.10e-140 | 441 |
| Msa0197010 | sp|Q9SSE9|JMJ25_ARATH | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 9.14e-22 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197010 | A0A396J3U9 | 72.667 | 150 | 20 | 3 | 1 | 130 | 10 | 158 | 1.41e-46 | 189 |
| Msa0197010 | A0A396J3U9 | 87.102 | 628 | 58 | 4 | 111 | 728 | 213 | 827 | 0.0 | 1079 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0197010 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0197010 | 0.826727 | 2.314157e-54 | -8.615850e-47 |
| Msa0016580 | Msa0197010 | 0.807501 | 4.901444e-50 | -8.615850e-47 |
| Msa0110270 | Msa0197010 | 0.800785 | 1.224738e-48 | -8.615850e-47 |
| Msa0197010 | Msa0231000 | 0.800458 | 1.427711e-48 | -8.615850e-47 |
| Msa0197010 | Msa0238820 | 0.845573 | 3.732916e-59 | -8.615850e-47 |
| Msa0197010 | Msa0238840 | 0.867388 | 1.419936e-65 | -8.615850e-47 |
| Msa0197010 | Msa0267000 | 0.825433 | 4.699317e-54 | -8.615850e-47 |
| Msa0197010 | Msa0267010 | 0.831100 | 2.020972e-55 | -8.615850e-47 |
| Msa0197010 | Msa0270520 | 0.803382 | 3.580224e-49 | -8.615850e-47 |
| Msa0197010 | Msa0276570 | 0.888803 | 4.268717e-73 | -8.615850e-47 |
| Msa0197010 | Msa0316590 | 0.882042 | 1.450943e-70 | -8.615850e-47 |
| Msa0197010 | Msa0342240 | 0.824803 | 6.620402e-54 | -8.615850e-47 |
| Msa0197010 | Msa0360510 | 0.808305 | 3.305655e-50 | -8.615850e-47 |
| Msa0197010 | Msa0414410 | 0.804346 | 2.257231e-49 | -8.615850e-47 |
| Msa0197010 | Msa0414420 | 0.815582 | 8.588407e-52 | -8.615850e-47 |
| Msa0197010 | Msa0452900 | 0.814443 | 1.536710e-51 | -8.615850e-47 |
| Msa0197010 | Msa0453120 | 0.813134 | 2.985446e-51 | -8.615850e-47 |
| Msa0197010 | Msa0459160 | 0.801524 | 8.647909e-49 | -8.615850e-47 |
| Msa0197010 | Msa0491590 | 0.807630 | 4.601569e-50 | -8.615850e-47 |
| Msa0197010 | Msa0564890 | 0.822302 | 2.548090e-53 | -8.615850e-47 |
| Msa0197010 | Msa0604350 | 0.827480 | 1.528503e-54 | -8.615850e-47 |
| Msa0197010 | Msa0636170 | 0.819072 | 1.407167e-52 | -8.615850e-47 |
| Msa0197010 | Msa0694370 | 0.811586 | 6.502335e-51 | -8.615850e-47 |
| Msa0197010 | Msa0726140 | 0.809987 | 1.442247e-50 | -8.615850e-47 |
| Msa0197010 | Msa0729800 | 0.803113 | 4.069697e-49 | -8.615850e-47 |
| Msa0197010 | Msa0733290 | 0.801615 | 8.283083e-49 | -8.615850e-47 |
| Msa0197010 | Msa0743810 | 0.821936 | 3.096435e-53 | -8.615850e-47 |
| Msa0197010 | Msa0745060 | 0.815542 | 8.766473e-52 | -8.615850e-47 |
| Msa0197010 | Msa0784290 | 0.821716 | 3.483105e-53 | -8.615850e-47 |
| Msa0197010 | Msa0808010 | 0.806002 | 1.016165e-49 | -8.615850e-47 |
| Msa0197010 | Msa0825860 | 0.818410 | 1.989498e-52 | -8.615850e-47 |
| Msa0197010 | Msa0845930 | 0.802246 | 6.143835e-49 | -8.615850e-47 |
| Msa0197010 | Msa0846330 | 0.804902 | 1.727990e-49 | -8.615850e-47 |
| Msa0197010 | Msa0846350 | 0.808365 | 3.210582e-50 | -8.615850e-47 |
| Msa0197010 | Msa0888370 | 0.832866 | 7.402690e-56 | -8.615850e-47 |
| Msa0197010 | Msa0899450 | 0.823132 | 1.632709e-53 | -8.615850e-47 |
| Msa0197010 | Msa0989060 | 0.812433 | 4.250780e-51 | -8.615850e-47 |
| Msa0197010 | Msa1024240 | 0.803434 | 3.492735e-49 | -8.615850e-47 |
| Msa0197010 | Msa1025360 | 0.837974 | 3.786821e-57 | -8.615850e-47 |
| Msa0197010 | Msa1025370 | 0.839073 | 1.970225e-57 | -8.615850e-47 |
| Msa0197010 | Msa1044830 | 0.831592 | 1.529479e-55 | -8.615850e-47 |
| Msa0197010 | Msa1044840 | 0.835225 | 1.898803e-56 | -8.615850e-47 |
| Msa0197010 | Msa1092990 | 0.818578 | 1.821626e-52 | -8.615850e-47 |
| Msa0197010 | Msa1099970 | 0.821817 | 3.300554e-53 | -8.615850e-47 |
| Msa0197010 | Msa1100980 | 0.804875 | 1.750854e-49 | -8.615850e-47 |
| Msa0197010 | Msa1112300 | 0.808683 | 2.746068e-50 | -8.615850e-47 |
| Msa0197010 | Msa1121200 | 0.817570 | 3.078964e-52 | -8.615850e-47 |
| Msa0197010 | Msa1146110 | 0.816819 | 4.543734e-52 | -8.615850e-47 |
| Msa0197010 | Msa1187940 | 0.801073 | 1.069383e-48 | -8.615850e-47 |
| Msa0197010 | Msa1269670 | 0.805024 | 1.629647e-49 | -8.615850e-47 |
| Msa0197010 | Msa1270230 | 0.815755 | 7.857603e-52 | -8.615850e-47 |
| Msa0197010 | Msa1270240 | 0.822848 | 1.901814e-53 | -8.615850e-47 |
| Msa0197010 | Msa1283330 | 0.815839 | 7.525899e-52 | -8.615850e-47 |
| Msa0197010 | Msa1287800 | 0.819596 | 1.068678e-52 | -8.615850e-47 |
| Msa0197010 | Msa1287810 | 0.823631 | 1.248493e-53 | -8.615850e-47 |
| Msa0197010 | Msa1307890 | 0.815311 | 9.866157e-52 | -8.615850e-47 |
| Msa0197010 | Msa1320300 | 0.812921 | 3.324021e-51 | -8.615850e-47 |
| Msa0197010 | Msa1340590 | 0.822799 | 1.952063e-53 | -8.615850e-47 |
| Msa0197010 | Msa1397580 | 0.827310 | 1.679164e-54 | -8.615850e-47 |
| Msa0197010 | Msa1404000 | 0.831966 | 1.236957e-55 | -8.615850e-47 |
| Msa0197010 | Msa1415310 | 0.814782 | 1.292969e-51 | -8.615850e-47 |
| Msa0197010 | Msa1433120 | 0.806341 | 8.622490e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197010 | MtrunA17_Chr2g0289121 | 87.102 | 628 | 58 | 4 | 111 | 728 | 213 | 827 | 0.0 | 1079 |
| Msa0197010 | MtrunA17_Chr2g0289121 | 72.667 | 150 | 20 | 3 | 1 | 130 | 10 | 158 | 2.72e-50 | 189 |
| Msa0197010 | MtrunA17_Chr4g0075261 | 61.538 | 663 | 193 | 10 | 110 | 726 | 224 | 870 | 0.0 | 789 |
| Msa0197010 | MtrunA17_Chr2g0289031 | 83.586 | 396 | 65 | 0 | 329 | 724 | 2 | 397 | 0.0 | 670 |
| Msa0197010 | MtrunA17_Chr1g0211711 | 49.317 | 659 | 276 | 12 | 110 | 720 | 400 | 1048 | 0.0 | 583 |
| Msa0197010 | MtrunA17_Chr1g0183311 | 48.869 | 663 | 254 | 12 | 135 | 720 | 225 | 879 | 0.0 | 575 |
| Msa0197010 | MtrunA17_Chr5g0426961 | 48.750 | 640 | 295 | 9 | 110 | 720 | 197 | 832 | 0.0 | 560 |
| Msa0197010 | MtrunA17_Chr5g0420361 | 47.179 | 638 | 263 | 18 | 131 | 704 | 152 | 779 | 7.88e-173 | 515 |
| Msa0197010 | MtrunA17_Chr6g0472441 | 41.679 | 655 | 277 | 18 | 120 | 704 | 82 | 701 | 9.26e-148 | 448 |
| Msa0197010 | MtrunA17_Chr1g0211661 | 44.202 | 595 | 280 | 12 | 110 | 663 | 282 | 865 | 2.83e-144 | 444 |
| Msa0197010 | MtrunA17_Chr1g0192011 | 34.446 | 659 | 346 | 11 | 123 | 723 | 333 | 963 | 1.97e-121 | 387 |
| Msa0197010 | MtrunA17_Chr8g0361381 | 85.047 | 214 | 26 | 2 | 306 | 519 | 1 | 208 | 2.61e-121 | 361 |
| Msa0197010 | MtrunA17_Chr1g0211691 | 43.019 | 530 | 242 | 10 | 135 | 611 | 423 | 945 | 3.06e-114 | 367 |
| Msa0197010 | MtrunA17_Chr7g0275771 | 41.009 | 456 | 232 | 7 | 130 | 549 | 212 | 666 | 2.51e-109 | 353 |
| Msa0197010 | MtrunA17_Chr7g0275771 | 51.364 | 220 | 95 | 4 | 503 | 722 | 719 | 926 | 1.96e-58 | 213 |
| Msa0197010 | MtrunA17_Chr2g0289041 | 89.412 | 170 | 15 | 1 | 111 | 280 | 38 | 204 | 5.19e-103 | 314 |
| Msa0197010 | MtrunA17_Chr5g0448301 | 40.741 | 486 | 232 | 10 | 182 | 633 | 168 | 631 | 1.20e-102 | 328 |
| Msa0197010 | MtrunA17_Chr2g0281051 | 31.959 | 679 | 367 | 10 | 129 | 719 | 282 | 953 | 5.04e-98 | 324 |
| Msa0197010 | MtrunA17_Chr1g0147021 | 41.986 | 443 | 214 | 9 | 130 | 552 | 944 | 1363 | 5.54e-94 | 320 |
| Msa0197010 | MtrunA17_Chr1g0147021 | 61.783 | 157 | 60 | 0 | 571 | 727 | 1546 | 1702 | 2.17e-55 | 206 |
| Msa0197010 | MtrunA17_Chr2g0289101 | 92.647 | 136 | 9 | 1 | 186 | 320 | 8 | 143 | 3.91e-84 | 263 |
| Msa0197010 | MtrunA17_Chr2g0289091 | 89.630 | 135 | 14 | 0 | 408 | 542 | 20 | 154 | 2.71e-81 | 265 |
| Msa0197010 | MtrunA17_Chr2g0289091 | 85.616 | 146 | 11 | 1 | 550 | 685 | 275 | 420 | 3.69e-79 | 259 |
| Msa0197010 | MtrunA17_Chr8g0361391 | 66.310 | 187 | 12 | 3 | 553 | 729 | 18 | 163 | 8.17e-73 | 233 |
| Msa0197010 | MtrunA17_Chr1g0211701 | 71.429 | 112 | 32 | 0 | 609 | 720 | 4 | 115 | 7.68e-48 | 166 |
| Msa0197010 | MtrunA17_Chr4g0048531 | 35.294 | 306 | 174 | 4 | 261 | 547 | 718 | 1018 | 2.69e-47 | 181 |
| Msa0197010 | MtrunA17_Chr4g0048531 | 48.387 | 155 | 79 | 1 | 568 | 722 | 1125 | 1278 | 3.24e-41 | 162 |
| Msa0197010 | MtrunA17_Chr4g0048531 | 34.135 | 208 | 114 | 5 | 84 | 287 | 312 | 500 | 5.41e-21 | 99.0 |
| Msa0197010 | MtrunA17_Chr7g0231061 | 48.101 | 158 | 82 | 0 | 395 | 552 | 9 | 166 | 4.85e-45 | 160 |
| Msa0197010 | MtrunA17_Chr8g0340381 | 63.218 | 87 | 28 | 2 | 432 | 518 | 36 | 118 | 5.77e-29 | 114 |
| Msa0197010 | MtrunA17_Chr8g0364421 | 30.769 | 234 | 144 | 4 | 162 | 389 | 3 | 224 | 1.71e-23 | 99.8 |
| Msa0197010 | MtrunA17_Chr1g0211671 | 59.322 | 59 | 24 | 0 | 662 | 720 | 15 | 73 | 5.82e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197010 | AT1G11950.1 | 55.556 | 630 | 254 | 8 | 111 | 723 | 251 | 871 | 0.0 | 705 |
| Msa0197010 | AT1G11950.3 | 55.556 | 630 | 254 | 8 | 111 | 723 | 251 | 871 | 0.0 | 705 |
| Msa0197010 | AT1G62310.1 | 56.322 | 609 | 243 | 5 | 118 | 704 | 271 | 878 | 0.0 | 678 |
| Msa0197010 | AT1G11950.2 | 53.036 | 560 | 237 | 8 | 111 | 653 | 251 | 801 | 0.0 | 588 |
| Msa0197010 | AT3G07610.1 | 47.791 | 498 | 214 | 9 | 255 | 721 | 410 | 892 | 2.14e-141 | 441 |
| Msa0197010 | AT3G07610.1 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 9.30e-23 | 104 |
| Msa0197010 | AT3G07610.3 | 45.068 | 517 | 222 | 10 | 255 | 721 | 410 | 914 | 8.84e-132 | 416 |
| Msa0197010 | AT3G07610.3 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 8.29e-23 | 104 |
| Msa0197010 | AT4G00990.3 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 1.91e-107 | 345 |
| Msa0197010 | AT4G00990.3 | 59.375 | 96 | 39 | 0 | 574 | 669 | 683 | 778 | 1.53e-30 | 129 |
| Msa0197010 | AT4G00990.2 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 2.74e-107 | 345 |
| Msa0197010 | AT4G00990.2 | 63.636 | 88 | 32 | 0 | 574 | 661 | 683 | 770 | 8.77e-30 | 126 |
| Msa0197010 | AT4G00990.1 | 43.649 | 433 | 208 | 9 | 130 | 539 | 154 | 573 | 6.53e-107 | 345 |
| Msa0197010 | AT4G00990.1 | 57.516 | 153 | 65 | 0 | 574 | 726 | 683 | 835 | 1.28e-52 | 196 |
| Msa0197010 | AT1G09060.2 | 31.269 | 662 | 353 | 13 | 123 | 723 | 273 | 893 | 9.12e-95 | 315 |
| Msa0197010 | AT1G09060.1 | 31.269 | 662 | 353 | 13 | 123 | 723 | 273 | 893 | 9.12e-95 | 315 |
| Msa0197010 | AT1G09060.4 | 31.269 | 662 | 353 | 13 | 123 | 723 | 287 | 907 | 1.01e-94 | 315 |
| Msa0197010 | AT1G09060.3 | 31.269 | 662 | 353 | 13 | 123 | 723 | 287 | 907 | 1.01e-94 | 315 |
| Msa0197010 | AT4G21430.1 | 28.919 | 657 | 376 | 15 | 126 | 727 | 299 | 919 | 9.33e-73 | 254 |
| Msa0197010 | AT3G07610.2 | 41.924 | 291 | 139 | 6 | 255 | 525 | 410 | 690 | 1.31e-59 | 215 |
| Msa0197010 | AT3G07610.2 | 44.262 | 122 | 67 | 1 | 119 | 239 | 219 | 340 | 1.79e-22 | 103 |
Find 117 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTTATACCTTGTATTT+TGG | 0.175006 | 2_1:+14635912 | None:intergenic |
| AAGATTAAAATTTATATAAA+AGG | 0.198623 | 2_1:-14636917 | Msa0197010:CDS |
| GAAAACATTCCAAAGAATTT+AGG | 0.229200 | 2_1:-14634089 | Msa0197010:CDS |
| CCACAACCACCTAGTTCTTT+TGG | 0.232816 | 2_1:+14635281 | None:intergenic |
| ATAAGTATGCCTAAATTCTT+TGG | 0.239219 | 2_1:+14634080 | None:intergenic |
| CATATTTCAAAGGAACATTT+AGG | 0.255943 | 2_1:+14635503 | None:intergenic |
| TCTCTTGCCCTGTGATTCTT+AGG | 0.277632 | 2_1:+14633517 | None:intergenic |
| AAGAAGAGAAGAGTTGAAAA+TGG | 0.299932 | 2_1:-14636749 | Msa0197010:CDS |
| AGGAATGTTGGATAATATAT+TGG | 0.300780 | 2_1:-14636585 | Msa0197010:intron |
| AAGAAGCTGGAGGAAGAGTT+TGG | 0.302446 | 2_1:-14633904 | Msa0197010:intron |
| GAGGGTCTTGTTCAAGATAA+TGG | 0.306737 | 2_1:-14634216 | Msa0197010:CDS |
| TTACTTGTATCACAAGTTAT+TGG | 0.332796 | 2_1:+14635371 | None:intergenic |
| AGTACCATAGTTCTTTGATT+TGG | 0.344680 | 2_1:+14636709 | None:intergenic |
| AGATGGGAGGATATCTAAAT+TGG | 0.352006 | 2_1:-14635225 | Msa0197010:CDS |
| TGACCAAGTTGTTAAAGAAT+TGG | 0.364202 | 2_1:-14633343 | Msa0197010:CDS |
| ATCACTATTCACATTCCATT+TGG | 0.366620 | 2_1:+14635322 | None:intergenic |
| AGAAACAGCTGGTGCACTTT+GGG | 0.368153 | 2_1:-14634157 | Msa0197010:CDS |
| CTTCCAATTCTTTAACAACT+TGG | 0.368676 | 2_1:+14633340 | None:intergenic |
| CAGATGTCAAGTGACCTTAT+AGG | 0.384738 | 2_1:-14635095 | Msa0197010:CDS |
| AGTTGCCACCAAATGTTATA+AGG | 0.385343 | 2_1:-14634548 | Msa0197010:CDS |
| TCCTCTGCCAAGCTCTTCTC+TGG | 0.390375 | 2_1:+14634488 | None:intergenic |
| GACACTCGCCAGTTCTTTGA+AGG | 0.395120 | 2_1:-14634747 | Msa0197010:CDS |
| TAAAAGCATTGGTCATGAAT+AGG | 0.398371 | 2_1:+14633946 | None:intergenic |
| AAAGAATTGGAAGCTTTCAT+TGG | 0.399008 | 2_1:-14633330 | Msa0197010:CDS |
| TTGTGATACAAGTAATTTAG+AGG | 0.403494 | 2_1:-14635363 | Msa0197010:CDS |
| ATCAAAATGCTCAAGAGATT+CGG | 0.413063 | 2_1:-14636780 | Msa0197010:CDS |
| GTTGGGAGCCAATGGTTACT+TGG | 0.413326 | 2_1:-14634986 | Msa0197010:CDS |
| ATTTAGGACAGCTTCTATAA+AGG | 0.417061 | 2_1:+14635519 | None:intergenic |
| TTATCATGACATGGAGTTTG+TGG | 0.423540 | 2_1:+14635787 | None:intergenic |
| ATTACCAAATCAAAGAACTA+TGG | 0.426043 | 2_1:-14636713 | Msa0197010:CDS |
| CTTTATAACCTTCAAAGAAC+TGG | 0.427941 | 2_1:+14634739 | None:intergenic |
| TGTACAGGCTATTGATTGCT+TGG | 0.428553 | 2_1:-14634910 | Msa0197010:CDS |
| GAGCACATAAGGCTCAAGAT+AGG | 0.434348 | 2_1:-14634242 | Msa0197010:CDS |
| AAGTCAGGCCTTATAACATT+TGG | 0.438608 | 2_1:+14634540 | None:intergenic |
| CACCGTTCCTCCAATACTCT+TGG | 0.440918 | 2_1:+14635054 | None:intergenic |
| AGAACGTCAAATATTAGAAC+AGG | 0.441025 | 2_1:+14635029 | None:intergenic |
| ACTTTGCAGTATCTTCTCTT+CGG | 0.452091 | 2_1:+14634127 | None:intergenic |
| CAGAAACAGCTGGTGCACTT+TGG | 0.453707 | 2_1:-14634158 | Msa0197010:CDS |
| ATGTTGAGATATTTACCAAA+TGG | 0.459203 | 2_1:-14635337 | Msa0197010:CDS |
| TATTTAAATTCCAAGAGTAT+TGG | 0.460840 | 2_1:-14635064 | Msa0197010:CDS |
| AATTTAGATATCCTCCCATC+TGG | 0.461007 | 2_1:+14635227 | None:intergenic |
| GTATTTCTTTGCAACAACTA+AGG | 0.462093 | 2_1:+14635480 | None:intergenic |
| GGATCGCAATACTCTTGAAA+TGG | 0.475406 | 2_1:+14634600 | None:intergenic |
| TTAAATTCCAAGAGTATTGG+AGG | 0.475955 | 2_1:-14635061 | Msa0197010:CDS |
| AAATGATAATTCAAATGTAC+AGG | 0.476218 | 2_1:-14634925 | Msa0197010:CDS |
| CACAAGAAAATAAAACTTGA+AGG | 0.478550 | 2_1:-14636677 | Msa0197010:CDS |
| TTATTGTTCTCCAGTAAAAG+AGG | 0.483787 | 2_1:-14634061 | Msa0197010:intron |
| GTAGTAAATTAATCATATAT+CGG | 0.484803 | 2_1:+14635989 | None:intergenic |
| GACGTTCTCAAACAAGGGAC+AGG | 0.489842 | 2_1:-14635014 | Msa0197010:CDS |
| GTCAAGAAGCAAAGGAATGT+TGG | 0.491438 | 2_1:-14636597 | Msa0197010:CDS |
| GTTCTTTGAAGGTTATAAAG+AGG | 0.497551 | 2_1:-14634736 | Msa0197010:CDS |
| TTTGTGATAGATGGCACAAA+AGG | 0.498165 | 2_1:+14634189 | None:intergenic |
| GTCGACTTCCTAAGAATCAC+AGG | 0.505039 | 2_1:-14633525 | Msa0197010:CDS |
| ACACCTTCAGATTTCTCACT+TGG | 0.506166 | 2_1:+14633736 | None:intergenic |
| AACAAGGGACAGGATTGAGT+TGG | 0.510060 | 2_1:-14635004 | Msa0197010:CDS |
| ACAAACTCCATGTCATGATA+AGG | 0.516847 | 2_1:-14635785 | Msa0197010:CDS |
| TGGTTGTGGTGGCTGTGTGA+TGG | 0.522574 | 2_1:-14635267 | Msa0197010:CDS |
| CAAAAGTCAAATAAAAGCAT+TGG | 0.523289 | 2_1:+14633935 | None:intergenic |
| AGGATTGAGTTGGGAGCCAA+TGG | 0.523462 | 2_1:-14634994 | Msa0197010:CDS |
| TTCAGATTTCTCACTTGGTG+AGG | 0.524957 | 2_1:+14633741 | None:intergenic |
| AGCACATAAGGCTCAAGATA+GGG | 0.524973 | 2_1:-14634241 | Msa0197010:CDS |
| GAGTATTGCGATCCTCGAGC+TGG | 0.528942 | 2_1:-14634591 | Msa0197010:CDS |
| TCAGGCCTTATAACATTTGG+TGG | 0.529368 | 2_1:+14634543 | None:intergenic |
| GTATCACAAGTTATTGGTAG+AGG | 0.529567 | 2_1:+14635377 | None:intergenic |
| ACAAGGGACAGGATTGAGTT+GGG | 0.531143 | 2_1:-14635003 | Msa0197010:CDS |
| TCAGATTTCTCACTTGGTGA+GGG | 0.534163 | 2_1:+14633742 | None:intergenic |
| ATGATAAGGAGCGTATGTAT+TGG | 0.537974 | 2_1:-14635771 | Msa0197010:intron |
| ACCAGAGAAGAGCTTGGCAG+AGG | 0.538284 | 2_1:-14634489 | Msa0197010:CDS |
| CTGAAGCGCATTCTTCCAGA+TGG | 0.539199 | 2_1:-14635242 | Msa0197010:CDS |
| ATATTTGACGTTCTCAAACA+AGG | 0.544534 | 2_1:-14635020 | Msa0197010:CDS |
| CTTTGTGTCACCAGAAAATG+TGG | 0.546636 | 2_1:-14633578 | Msa0197010:CDS |
| GAGATTGAAGCCAAAATACA+AGG | 0.547821 | 2_1:-14635922 | Msa0197010:intron |
| ACTTGGTGAGGGCATCCAGC+AGG | 0.549347 | 2_1:+14633753 | None:intergenic |
| AATGTTATAAGGCCTGACTT+AGG | 0.554124 | 2_1:-14634537 | Msa0197010:CDS |
| TTCTTTGAAGGTTATAAAGA+GGG | 0.554859 | 2_1:-14634735 | Msa0197010:CDS |
| TTCCAAGAGTATTGGAGGAA+CGG | 0.556361 | 2_1:-14635056 | Msa0197010:CDS |
| TATTTGACGTTCTCAAACAA+GGG | 0.560423 | 2_1:-14635019 | Msa0197010:CDS |
| CCAAAAGAACTAGGTGGTTG+TGG | 0.561255 | 2_1:-14635281 | Msa0197010:CDS |
| ACAACTAAGGCATATTTCAA+AGG | 0.561651 | 2_1:+14635493 | None:intergenic |
| AATGCTCTCCAAGTAACCAT+TGG | 0.575828 | 2_1:+14634978 | None:intergenic |
| TGAAACTTCATTTCAAAGCG+TGG | 0.577340 | 2_1:+14635440 | None:intergenic |
| TGATTGCTTGGCTAGTTGTG+AGG | 0.579197 | 2_1:-14634898 | Msa0197010:intron |
| TAACAACTTGGTCAACAGCA+TGG | 0.580070 | 2_1:+14633352 | None:intergenic |
| ATGACAAAGTCAAGAAGCAA+AGG | 0.583092 | 2_1:-14636605 | Msa0197010:CDS |
| AGATGCTCAAGCTAAAAGAC+TGG | 0.588373 | 2_1:-14634686 | Msa0197010:CDS |
| TAAGGCTCAAGATAGGGAAG+AGG | 0.594993 | 2_1:-14634235 | Msa0197010:CDS |
| AAATGGAATGTGAATAGTGA+TGG | 0.595578 | 2_1:-14635320 | Msa0197010:CDS |
| TTGGTGGCAACTTTGCAGCA+AGG | 0.598809 | 2_1:+14634559 | None:intergenic |
| AAAGATACATCAGAAACAGC+TGG | 0.604136 | 2_1:-14634168 | Msa0197010:CDS |
| GGTATCTCAATCTCTGAACA+TGG | 0.604496 | 2_1:+14635808 | None:intergenic |
| GAAGCAGTATTTATACCTGC+TGG | 0.606997 | 2_1:-14633768 | Msa0197010:CDS |
| TAAGGTCACTTGACATCTGA+CGG | 0.610508 | 2_1:+14635099 | None:intergenic |
| TATGGAACCAGAGAAGAGCT+TGG | 0.615802 | 2_1:-14634495 | Msa0197010:CDS |
| TGTGATACAAGTAATTTAGA+GGG | 0.619079 | 2_1:-14635362 | Msa0197010:CDS |
| AAAACAAAAGAATGTTGAGA+CGG | 0.619556 | 2_1:-14635159 | Msa0197010:CDS |
| AAGGCTCAAGATAGGGAAGA+GGG | 0.620022 | 2_1:-14634234 | Msa0197010:CDS |
| AGTTTCTGCTCAAAAGTCAA+AGG | 0.620576 | 2_1:+14633795 | None:intergenic |
| GAATGTGCTCCAAAAGAACT+AGG | 0.632610 | 2_1:-14635290 | Msa0197010:CDS |
| TCACCAAGTGAGAAATCTGA+AGG | 0.633939 | 2_1:-14633739 | Msa0197010:intron |
| CCATTGTGATATTGCAGACG+CGG | 0.646331 | 2_1:-14634448 | Msa0197010:intron |
| AGCGCATTCTTCCAGATGGG+AGG | 0.648445 | 2_1:-14635238 | Msa0197010:CDS |
| ACTCTTGAAATGGCAAACAA+CGG | 0.653289 | 2_1:+14634610 | None:intergenic |
| TGAAGCGCATTCTTCCAGAT+GGG | 0.654134 | 2_1:-14635241 | Msa0197010:CDS |
| TGAGCATAAGAAGAAGCTGG+AGG | 0.656147 | 2_1:-14633914 | Msa0197010:CDS |
| ATACGCTCCTTATCATGACA+TGG | 0.656480 | 2_1:+14635778 | None:intergenic |
| AGGTTGAGAATTCCAGCTCG+AGG | 0.678355 | 2_1:+14634579 | None:intergenic |
| CCGCGTCTGCAATATCACAA+TGG | 0.685598 | 2_1:+14634448 | None:intergenic |
| AAATTGGTAACAAAAGCTCA+CGG | 0.688434 | 2_1:-14635209 | Msa0197010:CDS |
| TGTTGCAAAGAAATACGCAA+CGG | 0.692822 | 2_1:-14635473 | Msa0197010:CDS |
| GGTCTTGTTCAAGATAATGG+AGG | 0.703775 | 2_1:-14634213 | Msa0197010:CDS |
| AAAGAACTAGGTGGTTGTGG+TGG | 0.707130 | 2_1:-14635278 | Msa0197010:CDS |
| AGAGGTGATGAATACATGCA+TGG | 0.707440 | 2_1:-14635407 | Msa0197010:CDS |
| ATAAACTCGTCACAATGTCG+CGG | 0.715284 | 2_1:+14634633 | None:intergenic |
| TCGACTTCCTAAGAATCACA+GGG | 0.715729 | 2_1:-14633524 | Msa0197010:CDS |
| GGCAAGAGAAGACAAACTTG+AGG | 0.737690 | 2_1:-14633503 | Msa0197010:intron |
| TGTGCTCCAAAAGAACTAGG+TGG | 0.792037 | 2_1:-14635287 | Msa0197010:CDS |
| GGTGATGAATACATGCATGG+TGG | 0.798300 | 2_1:-14635404 | Msa0197010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAGAGAAATAAATAT+TGG | + | chr2_1:14635445-14635464 | None:intergenic | 10.0% |
| !! | TTAATTATTGTGTTTATTTA+TGG | - | chr2_1:14636807-14636826 | Msa0197010:CDS | 10.0% |
| !! | TAATTATTGTGTTTATTTAT+GGG | - | chr2_1:14636808-14636827 | Msa0197010:CDS | 10.0% |
| !! | AATTTGTGTTAAATAATTAC+AGG | - | chr2_1:14633744-14633763 | Msa0197010:CDS | 15.0% |
| !! | GTAGTAAATTAATCATATAT+CGG | + | chr2_1:14634245-14634264 | None:intergenic | 15.0% |
| !!! | TCTTTTGTATTTTGTTTTTT+TGG | - | chr2_1:14634657-14634676 | Msa0197010:CDS | 15.0% |
| !! | AATTATTGTGTTTATTTATG+GGG | - | chr2_1:14636809-14636828 | Msa0197010:CDS | 15.0% |
| !!! | ACATGTTTTGATATTTTGTT+TGG | + | chr2_1:14633773-14633792 | None:intergenic | 20.0% |
| !!! | GTTTAAGATGTATTAAAGAT+TGG | - | chr2_1:14633857-14633876 | Msa0197010:intron | 20.0% |
| !!! | TTTTTTTCATTTTTGCACAT+AGG | - | chr2_1:14633976-14633995 | Msa0197010:intron | 20.0% |
| !! | CATTAGAGAAACAAATTTAA+GGG | + | chr2_1:14634126-14634145 | None:intergenic | 20.0% |
| !! | TCATTAGAGAAACAAATTTA+AGG | + | chr2_1:14634127-14634146 | None:intergenic | 20.0% |
| !!! | TAAATTTTCCAAACTATTAC+TGG | - | chr2_1:14634559-14634578 | Msa0197010:CDS | 20.0% |
| !! | AAGTTTCAATACAAAAATAG+AGG | - | chr2_1:14634806-14634825 | Msa0197010:intron | 20.0% |
| !!! | TAAATAGCTTTTTTCCTATA+AGG | + | chr2_1:14635153-14635172 | None:intergenic | 20.0% |
| !!! | TATTTAAATTCCAAGAGTAT+TGG | - | chr2_1:14635167-14635186 | Msa0197010:CDS | 20.0% |
| !! | AAATGATAATTCAAATGTAC+AGG | - | chr2_1:14635306-14635325 | Msa0197010:CDS | 20.0% |
| !! | GAAGAAGATATAAAAATTTC+TGG | - | chr2_1:14635518-14635537 | Msa0197010:CDS | 20.0% |
| !!! | TATTGTTCAATAATTTTGAC+AGG | - | chr2_1:14635894-14635913 | Msa0197010:intron | 20.0% |
| !!! | AAAAATAAAAAGAGCACATA+AGG | - | chr2_1:14635978-14635997 | Msa0197010:CDS | 20.0% |
| !!! | TAATAAAATACCTCTTTTAC+TGG | + | chr2_1:14636183-14636202 | None:intergenic | 20.0% |
| !!! | TCACATATAATCAACATTTT+CGG | - | chr2_1:14636203-14636222 | Msa0197010:intron | 20.0% |
| !! | ATTATTGTGTTTATTTATGG+GGG | - | chr2_1:14636810-14636829 | Msa0197010:CDS | 20.0% |
| !!! | TGATATTTTTTCTATGAAAC+AGG | - | chr2_1:14636840-14636859 | Msa0197010:CDS | 20.0% |
| !! | ATCAACAATCTGAGTTTTTA+AGG | - | chr2_1:14633345-14633364 | Msa0197010:CDS | 25.0% |
| ! | ATTACCAAATCAAAGAACTA+TGG | - | chr2_1:14633518-14633537 | Msa0197010:CDS | 25.0% |
| ! | CACAAGAAAATAAAACTTGA+AGG | - | chr2_1:14633554-14633573 | Msa0197010:CDS | 25.0% |
| ! | AGGAATGTTGGATAATATAT+TGG | - | chr2_1:14633646-14633665 | Msa0197010:intron | 25.0% |
| !! | TTCCTTTATGACAACTATTT+TGG | - | chr2_1:14633696-14633715 | Msa0197010:intron | 25.0% |
| ! | AACCAAAATAGTTGTCATAA+AGG | + | chr2_1:14633701-14633720 | None:intergenic | 25.0% |
| ! | TTTGTACAAGATACAAATTG+TGG | + | chr2_1:14633820-14633839 | None:intergenic | 25.0% |
| ! | TATTAACAAATATGTGACCT+TGG | + | chr2_1:14633913-14633932 | None:intergenic | 25.0% |
| ! | ATATCTCCAATTGACATATT+GGG | + | chr2_1:14634005-14634024 | None:intergenic | 25.0% |
| ! | TCAAAAATTAAGCAAAGAGA+TGG | + | chr2_1:14634270-14634289 | None:intergenic | 25.0% |
| !! | TGAAGTTATACCTTGTATTT+TGG | + | chr2_1:14634322-14634341 | None:intergenic | 25.0% |
| ! | ATATGAGAGTTTATTGTTAG+TGG | + | chr2_1:14634395-14634414 | None:intergenic | 25.0% |
| ! | TAACAATAAACTCTCATATC+AGG | - | chr2_1:14634396-14634415 | Msa0197010:intron | 25.0% |
| ! | TGCAACATAGTAAGTATAAA+AGG | + | chr2_1:14634504-14634523 | None:intergenic | 25.0% |
| ! | CATATTTCAAAGGAACATTT+AGG | + | chr2_1:14634731-14634750 | None:intergenic | 25.0% |
| ! | TTACTTGTATCACAAGTTAT+TGG | + | chr2_1:14634863-14634882 | None:intergenic | 25.0% |
| ! | TTGTGATACAAGTAATTTAG+AGG | - | chr2_1:14634868-14634887 | Msa0197010:intron | 25.0% |
| ! | TGTGATACAAGTAATTTAGA+GGG | - | chr2_1:14634869-14634888 | Msa0197010:intron | 25.0% |
| ! | ATGTTGAGATATTTACCAAA+TGG | - | chr2_1:14634894-14634913 | Msa0197010:intron | 25.0% |
| ! | AAAACAAAAGAATGTTGAGA+CGG | - | chr2_1:14635072-14635091 | Msa0197010:CDS | 25.0% |
| ! | TTTCGTAGTTAAATTTCCTT+TGG | - | chr2_1:14635361-14635380 | Msa0197010:CDS | 25.0% |
| !! | TTCTTTGAAGGTTATAAAGA+GGG | - | chr2_1:14635496-14635515 | Msa0197010:CDS | 25.0% |
| !! | ACATTTTCAAACTCATCATA+AGG | + | chr2_1:14635574-14635593 | None:intergenic | 25.0% |
| ! | TTTCAATTTCAACGCTATAT+TGG | - | chr2_1:14635838-14635857 | Msa0197010:intron | 25.0% |
| !!! | TATTTTGACTCATATAACTG+AGG | - | chr2_1:14635921-14635940 | Msa0197010:intron | 25.0% |
| ! | GAAAACATTCCAAAGAATTT+AGG | - | chr2_1:14636142-14636161 | Msa0197010:intron | 25.0% |
| ! | ATAAGTATGCCTAAATTCTT+TGG | + | chr2_1:14636154-14636173 | None:intergenic | 25.0% |
| !! | CAAAAGTCAAATAAAAGCAT+TGG | + | chr2_1:14636299-14636318 | None:intergenic | 25.0% |
| !!! | ACATACATGTACTTTTAAAG+AGG | + | chr2_1:14636541-14636560 | None:intergenic | 25.0% |
| ! | CACAATAATTAAGCAAAGTT+TGG | + | chr2_1:14636799-14636818 | None:intergenic | 25.0% |
| ATCAAAATGCTCAAGAGATT+CGG | - | chr2_1:14633451-14633470 | Msa0197010:intron | 30.0% | |
| AAGAAGAGAAGAGTTGAAAA+TGG | - | chr2_1:14633482-14633501 | Msa0197010:intron | 30.0% | |
| AGTACCATAGTTCTTTGATT+TGG | + | chr2_1:14633525-14633544 | None:intergenic | 30.0% | |
| !! | TTTTGAAGATGAAGAAGATG+AGG | - | chr2_1:14633586-14633605 | Msa0197010:CDS | 30.0% |
| ACATCTAAATAACCATTCCA+AGG | - | chr2_1:14633893-14633912 | Msa0197010:intron | 30.0% | |
| TATCTCCAATTGACATATTG+GGG | + | chr2_1:14634004-14634023 | None:intergenic | 30.0% | |
| GATATCTCCAATTGACATAT+TGG | + | chr2_1:14634006-14634025 | None:intergenic | 30.0% | |
| CATTGCAATTGCAATTCTTA+CGG | + | chr2_1:14634049-14634068 | None:intergenic | 30.0% | |
| AATGTTTGCTTGTGTTCAAA+AGG | - | chr2_1:14634065-14634084 | Msa0197010:CDS | 30.0% | |
| ! | ATTTAGGACAGCTTCTATAA+AGG | + | chr2_1:14634715-14634734 | None:intergenic | 30.0% |
| ACAACTAAGGCATATTTCAA+AGG | + | chr2_1:14634741-14634760 | None:intergenic | 30.0% | |
| GTATTTCTTTGCAACAACTA+AGG | + | chr2_1:14634754-14634773 | None:intergenic | 30.0% | |
| ATCACTATTCACATTCCATT+TGG | + | chr2_1:14634912-14634931 | None:intergenic | 30.0% | |
| AAATGGAATGTGAATAGTGA+TGG | - | chr2_1:14634911-14634930 | Msa0197010:CDS | 30.0% | |
| ! | AAATTGGTAACAAAAGCTCA+CGG | - | chr2_1:14635022-14635041 | Msa0197010:CDS | 30.0% |
| !! | TTAAATTCCAAGAGTATTGG+AGG | - | chr2_1:14635170-14635189 | Msa0197010:CDS | 30.0% |
| AGAACGTCAAATATTAGAAC+AGG | + | chr2_1:14635205-14635224 | None:intergenic | 30.0% | |
| ATATTTGACGTTCTCAAACA+AGG | - | chr2_1:14635211-14635230 | Msa0197010:CDS | 30.0% | |
| TATTTGACGTTCTCAAACAA+GGG | - | chr2_1:14635212-14635231 | Msa0197010:CDS | 30.0% | |
| TTCTCTTTATAAACCTTTGC+AGG | - | chr2_1:14635453-14635472 | Msa0197010:CDS | 30.0% | |
| CTTTATAACCTTCAAAGAAC+TGG | + | chr2_1:14635495-14635514 | None:intergenic | 30.0% | |
| ! | GTTCTTTGAAGGTTATAAAG+AGG | - | chr2_1:14635495-14635514 | Msa0197010:CDS | 30.0% |
| ! | TTTTCAAACTCATCATAAGG+TGG | + | chr2_1:14635571-14635590 | None:intergenic | 30.0% |
| ! | CCATAAGCAATGTAAGTTTT+TGG | + | chr2_1:14635721-14635740 | None:intergenic | 30.0% |
| CCAAAAACTTACATTGCTTA+TGG | - | chr2_1:14635718-14635737 | Msa0197010:intron | 30.0% | |
| ! | GATGTATCTTTTGTGATAGA+TGG | + | chr2_1:14636054-14636073 | None:intergenic | 30.0% |
| TTATTGTTCTCCAGTAAAAG+AGG | - | chr2_1:14636170-14636189 | Msa0197010:intron | 30.0% | |
| AACCTAAGAAACAAAGAAGT+TGG | + | chr2_1:14636259-14636278 | None:intergenic | 30.0% | |
| !! | TAAAAGCATTGGTCATGAAT+AGG | + | chr2_1:14636288-14636307 | None:intergenic | 30.0% |
| CCTGTAATTGATTAAGATTC+TGG | + | chr2_1:14636409-14636428 | None:intergenic | 30.0% | |
| CCAGAATCTTAATCAATTAC+AGG | - | chr2_1:14636406-14636425 | Msa0197010:intron | 30.0% | |
| ! | ATGCATATATCCACATTTTC+TGG | + | chr2_1:14636666-14636685 | None:intergenic | 30.0% |
| TGGAATTCACATCAAAAGAA+AGG | + | chr2_1:14636779-14636798 | None:intergenic | 30.0% | |
| TGACCAAGTTGTTAAAGAAT+TGG | - | chr2_1:14636888-14636907 | Msa0197010:CDS | 30.0% | |
| CTTCCAATTCTTTAACAACT+TGG | + | chr2_1:14636894-14636913 | None:intergenic | 30.0% | |
| AAAGAATTGGAAGCTTTCAT+TGG | - | chr2_1:14636901-14636920 | Msa0197010:CDS | 30.0% | |
| ATGACAAAGTCAAGAAGCAA+AGG | - | chr2_1:14633626-14633645 | Msa0197010:intron | 35.0% | |
| ACAAATATGTGACCTTGGAA+TGG | + | chr2_1:14633908-14633927 | None:intergenic | 35.0% | |
| TTGCAATTCTTACGGCAAAA+GGG | + | chr2_1:14634041-14634060 | None:intergenic | 35.0% | |
| ATTGCAATTCTTACGGCAAA+AGG | + | chr2_1:14634042-14634061 | None:intergenic | 35.0% | |
| GTGTTCAAAAGGAATGATCA+AGG | - | chr2_1:14634076-14634095 | Msa0197010:CDS | 35.0% | |
| GAGATTGAAGCCAAAATACA+AGG | - | chr2_1:14634309-14634328 | Msa0197010:CDS | 35.0% | |
| TTATCATGACATGGAGTTTG+TGG | + | chr2_1:14634447-14634466 | None:intergenic | 35.0% | |
| ACAAACTCCATGTCATGATA+AGG | - | chr2_1:14634446-14634465 | Msa0197010:intron | 35.0% | |
| ! | ATGATAAGGAGCGTATGTAT+TGG | - | chr2_1:14634460-14634479 | Msa0197010:CDS | 35.0% |
| CGTCAATACCAGTAATAGTT+TGG | + | chr2_1:14634570-14634589 | None:intergenic | 35.0% | |
| TGTTGCAAAGAAATACGCAA+CGG | - | chr2_1:14634758-14634777 | Msa0197010:CDS | 35.0% | |
| TGAAACTTCATTTCAAAGCG+TGG | + | chr2_1:14634794-14634813 | None:intergenic | 35.0% | |
| GTATCACAAGTTATTGGTAG+AGG | + | chr2_1:14634857-14634876 | None:intergenic | 35.0% | |
| AATTTAGATATCCTCCCATC+TGG | + | chr2_1:14635007-14635026 | None:intergenic | 35.0% | |
| AGATGGGAGGATATCTAAAT+TGG | - | chr2_1:14635006-14635025 | Msa0197010:CDS | 35.0% | |
| GTAAGAATGAACATCACCAA+AGG | + | chr2_1:14635380-14635399 | None:intergenic | 35.0% | |
| ! | GTGTCAATTTTTACCTGCAA+AGG | + | chr2_1:14635469-14635488 | None:intergenic | 35.0% |
| ACTCTTGAAATGGCAAACAA+CGG | + | chr2_1:14635624-14635643 | None:intergenic | 35.0% | |
| AGTTGCCACCAAATGTTATA+AGG | - | chr2_1:14635683-14635702 | Msa0197010:intron | 35.0% | |
| ! | AAGTCAGGCCTTATAACATT+TGG | + | chr2_1:14635694-14635713 | None:intergenic | 35.0% |
| AATGTTATAAGGCCTGACTT+AGG | - | chr2_1:14635694-14635713 | Msa0197010:intron | 35.0% | |
| !! | TAAGTTTTTGGACCTAAGTC+AGG | + | chr2_1:14635709-14635728 | None:intergenic | 35.0% |
| TTTGTGATAGATGGCACAAA+AGG | + | chr2_1:14636045-14636064 | None:intergenic | 35.0% | |
| AAAGATACATCAGAAACAGC+TGG | - | chr2_1:14636063-14636082 | Msa0197010:intron | 35.0% | |
| ACTTTGCAGTATCTTCTCTT+CGG | + | chr2_1:14636107-14636126 | None:intergenic | 35.0% | |
| ! | CACCAACTTCTTTGTTTCTT+AGG | - | chr2_1:14636254-14636273 | Msa0197010:intron | 35.0% |
| ! | TTTTGAGCATAAGAAGAAGC+TGG | - | chr2_1:14636314-14636333 | Msa0197010:intron | 35.0% |
| AGTTTCTGCTCAAAAGTCAA+AGG | + | chr2_1:14636439-14636458 | None:intergenic | 35.0% | |
| ! | TTGACTTTTGAGCAGAAACT+TGG | - | chr2_1:14636439-14636458 | Msa0197010:intron | 35.0% |
| GTCAAGAAGCAAAGGAATGT+TGG | - | chr2_1:14633634-14633653 | Msa0197010:intron | 40.0% | |
| ATGTCATCAGTGCTTGAGAA+AGG | - | chr2_1:14633789-14633808 | Msa0197010:CDS | 40.0% | |
| ATCAGTGCTTGAGAAAGGAT+AGG | - | chr2_1:14633794-14633813 | Msa0197010:CDS | 40.0% | |
| AGGTACCCCAATATGTCAAT+TGG | - | chr2_1:14633996-14634015 | Msa0197010:intron | 40.0% | |
| TGCAATTCTTACGGCAAAAG+GGG | + | chr2_1:14634040-14634059 | None:intergenic | 40.0% | |
| GGTATCTCAATCTCTGAACA+TGG | + | chr2_1:14634426-14634445 | None:intergenic | 40.0% | |
| ATACGCTCCTTATCATGACA+TGG | + | chr2_1:14634456-14634475 | None:intergenic | 40.0% | |
| AGAGGTGATGAATACATGCA+TGG | - | chr2_1:14634824-14634843 | Msa0197010:intron | 40.0% | |
| GAATGTGCTCCAAAAGAACT+AGG | - | chr2_1:14634941-14634960 | Msa0197010:CDS | 40.0% | |
| TAAGGTCACTTGACATCTGA+CGG | + | chr2_1:14635135-14635154 | None:intergenic | 40.0% | |
| CAGATGTCAAGTGACCTTAT+AGG | - | chr2_1:14635136-14635155 | Msa0197010:CDS | 40.0% | |
| !! | TTCCAAGAGTATTGGAGGAA+CGG | - | chr2_1:14635175-14635194 | Msa0197010:CDS | 40.0% |
| AATGCTCTCCAAGTAACCAT+TGG | + | chr2_1:14635256-14635275 | None:intergenic | 40.0% | |
| ! | TGTACAGGCTATTGATTGCT+TGG | - | chr2_1:14635321-14635340 | Msa0197010:CDS | 40.0% |
| !!! | TCTTTTAGCTTGAGCATCTC+TGG | + | chr2_1:14635544-14635563 | None:intergenic | 40.0% |
| AGATGCTCAAGCTAAAAGAC+TGG | - | chr2_1:14635545-14635564 | Msa0197010:CDS | 40.0% | |
| ATAAACTCGTCACAATGTCG+CGG | + | chr2_1:14635601-14635620 | None:intergenic | 40.0% | |
| GGATCGCAATACTCTTGAAA+TGG | + | chr2_1:14635634-14635653 | None:intergenic | 40.0% | |
| ! | TCAGGCCTTATAACATTTGG+TGG | + | chr2_1:14635691-14635710 | None:intergenic | 40.0% |
| TTGGTGCGACAAGTATAAGA+TGG | - | chr2_1:14635857-14635876 | Msa0197010:intron | 40.0% | |
| AGCACATAAGGCTCAAGATA+GGG | - | chr2_1:14635990-14636009 | Msa0197010:CDS | 40.0% | |
| !! | GAGGGTCTTGTTCAAGATAA+TGG | - | chr2_1:14636015-14636034 | Msa0197010:CDS | 40.0% |
| !! | GGTCTTGTTCAAGATAATGG+AGG | - | chr2_1:14636018-14636037 | Msa0197010:CDS | 40.0% |
| GAAGCAGTATTTATACCTGC+TGG | - | chr2_1:14636463-14636482 | Msa0197010:intron | 40.0% | |
| ! | TCAGATTTCTCACTTGGTGA+GGG | + | chr2_1:14636492-14636511 | None:intergenic | 40.0% |
| ! | TTCAGATTTCTCACTTGGTG+AGG | + | chr2_1:14636493-14636512 | None:intergenic | 40.0% |
| TCACCAAGTGAGAAATCTGA+AGG | - | chr2_1:14636492-14636511 | Msa0197010:intron | 40.0% | |
| ACACCTTCAGATTTCTCACT+TGG | + | chr2_1:14636498-14636517 | None:intergenic | 40.0% | |
| CTTTGTGTCACCAGAAAATG+TGG | - | chr2_1:14636653-14636672 | Msa0197010:CDS | 40.0% | |
| TCGACTTCCTAAGAATCACA+GGG | - | chr2_1:14636707-14636726 | Msa0197010:CDS | 40.0% | |
| TAACAACTTGGTCAACAGCA+TGG | + | chr2_1:14636882-14636901 | None:intergenic | 40.0% | |
| CAATTGGAGATATCGCAGAG+AGG | - | chr2_1:14634012-14634031 | Msa0197010:intron | 45.0% | |
| GGTGATGAATACATGCATGG+TGG | - | chr2_1:14634827-14634846 | Msa0197010:intron | 45.0% | |
| TGTGCTCCAAAAGAACTAGG+TGG | - | chr2_1:14634944-14634963 | Msa0197010:CDS | 45.0% | |
| !! | CCACAACCACCTAGTTCTTT+TGG | + | chr2_1:14634953-14634972 | None:intergenic | 45.0% |
| CCAAAAGAACTAGGTGGTTG+TGG | - | chr2_1:14634950-14634969 | Msa0197010:CDS | 45.0% | |
| AAAGAACTAGGTGGTTGTGG+TGG | - | chr2_1:14634953-14634972 | Msa0197010:CDS | 45.0% | |
| TGAAGCGCATTCTTCCAGAT+GGG | - | chr2_1:14634990-14635009 | Msa0197010:CDS | 45.0% | |
| AACAAGGGACAGGATTGAGT+TGG | - | chr2_1:14635227-14635246 | Msa0197010:CDS | 45.0% | |
| ACAAGGGACAGGATTGAGTT+GGG | - | chr2_1:14635228-14635247 | Msa0197010:CDS | 45.0% | |
| ! | TGATTGCTTGGCTAGTTGTG+AGG | - | chr2_1:14635333-14635352 | Msa0197010:CDS | 45.0% |
| TATGGAACCAGAGAAGAGCT+TGG | - | chr2_1:14635736-14635755 | Msa0197010:intron | 45.0% | |
| CCATTGTGATATTGCAGACG+CGG | - | chr2_1:14635783-14635802 | Msa0197010:CDS | 45.0% | |
| GAGCACATAAGGCTCAAGAT+AGG | - | chr2_1:14635989-14636008 | Msa0197010:CDS | 45.0% | |
| TAAGGCTCAAGATAGGGAAG+AGG | - | chr2_1:14635996-14636015 | Msa0197010:CDS | 45.0% | |
| AAGGCTCAAGATAGGGAAGA+GGG | - | chr2_1:14635997-14636016 | Msa0197010:CDS | 45.0% | |
| AGAAACAGCTGGTGCACTTT+GGG | - | chr2_1:14636074-14636093 | Msa0197010:intron | 45.0% | |
| TGAGCATAAGAAGAAGCTGG+AGG | - | chr2_1:14636317-14636336 | Msa0197010:intron | 45.0% | |
| AAGAAGCTGGAGGAAGAGTT+TGG | - | chr2_1:14636327-14636346 | Msa0197010:intron | 45.0% | |
| ! | GTCGACTTCCTAAGAATCAC+AGG | - | chr2_1:14636706-14636725 | Msa0197010:CDS | 45.0% |
| TCTCTTGCCCTGTGATTCTT+AGG | + | chr2_1:14636717-14636736 | None:intergenic | 45.0% | |
| GGCAAGAGAAGACAAACTTG+AGG | - | chr2_1:14636728-14636747 | Msa0197010:CDS | 45.0% | |
| !! | AAGATTAAAATTTATATAAA+AGG | - | chr2_1:14633314-14633333 | Msa0197010:CDS | 5.0% |
| CTGAAGCGCATTCTTCCAGA+TGG | - | chr2_1:14634989-14635008 | Msa0197010:CDS | 50.0% | |
| CACCGTTCCTCCAATACTCT+TGG | + | chr2_1:14635180-14635199 | None:intergenic | 50.0% | |
| GACGTTCTCAAACAAGGGAC+AGG | - | chr2_1:14635217-14635236 | Msa0197010:CDS | 50.0% | |
| !! | AGGATTGAGTTGGGAGCCAA+TGG | - | chr2_1:14635237-14635256 | Msa0197010:CDS | 50.0% |
| GTTGGGAGCCAATGGTTACT+TGG | - | chr2_1:14635245-14635264 | Msa0197010:CDS | 50.0% | |
| GACACTCGCCAGTTCTTTGA+AGG | - | chr2_1:14635484-14635503 | Msa0197010:CDS | 50.0% | |
| AGGTTGAGAATTCCAGCTCG+AGG | + | chr2_1:14635655-14635674 | None:intergenic | 50.0% | |
| ! | TTGGTGGCAACTTTGCAGCA+AGG | + | chr2_1:14635675-14635694 | None:intergenic | 50.0% |
| CCGCGTCTGCAATATCACAA+TGG | + | chr2_1:14635786-14635805 | None:intergenic | 50.0% | |
| CAGAAACAGCTGGTGCACTT+TGG | - | chr2_1:14636073-14636092 | Msa0197010:intron | 50.0% | |
| TGGTTGTGGTGGCTGTGTGA+TGG | - | chr2_1:14634964-14634983 | Msa0197010:CDS | 55.0% | |
| AGCGCATTCTTCCAGATGGG+AGG | - | chr2_1:14634993-14635012 | Msa0197010:CDS | 55.0% | |
| ! | GAGTATTGCGATCCTCGAGC+TGG | - | chr2_1:14635640-14635659 | Msa0197010:intron | 55.0% |
| ACCAGAGAAGAGCTTGGCAG+AGG | - | chr2_1:14635742-14635761 | Msa0197010:intron | 55.0% | |
| TCCTCTGCCAAGCTCTTCTC+TGG | + | chr2_1:14635746-14635765 | None:intergenic | 55.0% | |
| !! | ACTTGGTGAGGGCATCCAGC+AGG | + | chr2_1:14636481-14636500 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 14633311 | 14636942 | 14633311 | ID=Msa0197010;Name=Msa0197010 |
| chr2_1 | mRNA | 14633311 | 14636942 | 14633311 | ID=Msa0197010-mRNA-1;Parent=Msa0197010;Name=Msa0197010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|10|0|729 |
| chr2_1 | exon | 14636586 | 14636942 | 14636586 | ID=Msa0197010-mRNA-1:exon:6204;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14635923 | 14636055 | 14635923 | ID=Msa0197010-mRNA-1:exon:6203;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14635772 | 14635835 | 14635772 | ID=Msa0197010-mRNA-1:exon:6202;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14634899 | 14635568 | 14634899 | ID=Msa0197010-mRNA-1:exon:6201;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14634449 | 14634778 | 14634449 | ID=Msa0197010-mRNA-1:exon:6200;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14634062 | 14634337 | 14634062 | ID=Msa0197010-mRNA-1:exon:6199;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14633905 | 14633977 | 14633905 | ID=Msa0197010-mRNA-1:exon:6198;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14633740 | 14633825 | 14633740 | ID=Msa0197010-mRNA-1:exon:6197;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14633504 | 14633623 | 14633504 | ID=Msa0197010-mRNA-1:exon:6196;Parent=Msa0197010-mRNA-1 |
| chr2_1 | exon | 14633311 | 14633391 | 14633311 | ID=Msa0197010-mRNA-1:exon:6195;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14636586 | 14636942 | 14636586 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14635923 | 14636055 | 14635923 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14635772 | 14635835 | 14635772 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14634899 | 14635568 | 14634899 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14634449 | 14634778 | 14634449 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14634062 | 14634337 | 14634062 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14633905 | 14633977 | 14633905 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14633740 | 14633825 | 14633740 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14633504 | 14633623 | 14633504 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| chr2_1 | CDS | 14633311 | 14633391 | 14633311 | ID=Msa0197010-mRNA-1:cds;Parent=Msa0197010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
