Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239340 | XP_003594243.1 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 3.91e-173 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239340 | sp|Q9M8S8|VTC4_ARATH | 82.083 | 240 | 42 | 1 | 1 | 240 | 1 | 239 | 5.01e-143 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239340 | G7IP84 | 98.750 | 240 | 3 | 0 | 1 | 240 | 1 | 240 | 1.87e-173 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197300 | Msa0239340 | 0.995994 | 3.525223e-222 | -8.615850e-47 |
| Msa0239340 | Msa0277400 | 0.883392 | 4.665167e-71 | -8.615850e-47 |
| Msa0239340 | Msa1379570 | 0.872787 | 2.430842e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239340 | MtrunA17_Chr2g0290121 | 98.340 | 241 | 3 | 1 | 1 | 240 | 1 | 241 | 1.57e-175 | 483 |
| Msa0239340 | MtrunA17_Chr2g0306101 | 35.897 | 234 | 137 | 6 | 11 | 237 | 66 | 293 | 1.27e-36 | 132 |
| Msa0239340 | MtrunA17_Chr3g0145001 | 28.270 | 237 | 155 | 6 | 7 | 239 | 62 | 287 | 1.00e-20 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0239340 | AT3G02870.1 | 82.083 | 240 | 42 | 1 | 1 | 240 | 1 | 239 | 5.10e-144 | 404 |
| Msa0239340 | AT3G02870.3 | 80.833 | 240 | 42 | 1 | 1 | 240 | 1 | 236 | 9.95e-142 | 398 |
| Msa0239340 | AT3G02870.2 | 81.250 | 240 | 42 | 2 | 1 | 240 | 1 | 237 | 8.45e-141 | 395 |
| Msa0239340 | AT1G31190.1 | 35.294 | 238 | 132 | 8 | 12 | 237 | 87 | 314 | 4.76e-32 | 120 |
| Msa0239340 | AT4G39120.1 | 26.360 | 239 | 162 | 4 | 4 | 239 | 79 | 306 | 6.85e-20 | 87.4 |
| Msa0239340 | AT4G39120.2 | 26.360 | 239 | 162 | 4 | 4 | 239 | 108 | 335 | 1.06e-19 | 87.0 |
Find 74 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCACACCTCATTGATTAT+TGG | 0.252568 | 2_2:+13624464 | None:intergenic |
| TTGAATGGGAACCCTATAAA+AGG | 0.275907 | 2_2:-13624156 | Msa0239340:intron |
| TATGTTCGACGTGCTTAGTT+TGG | 0.301815 | 2_2:+13625321 | None:intergenic |
| GAAGAAACCACAGCTGCTTT+TGG | 0.311320 | 2_2:-13624716 | Msa0239340:CDS |
| GTCTCCATTGGTCTTACAAT+TGG | 0.356667 | 2_2:-13624518 | Msa0239340:CDS |
| CTGGATGTGTTCTATGAAAC+TGG | 0.361010 | 2_2:-13622214 | Msa0239340:CDS |
| ATGTTCGACGTGCTTAGTTT+GGG | 0.361457 | 2_2:+13625322 | None:intergenic |
| AAGCAAACTATTAATCCTAT+TGG | 0.366970 | 2_2:+13622392 | None:intergenic |
| GGGAAAGGTGCTTTCTTGAA+TGG | 0.393210 | 2_2:-13624171 | Msa0239340:CDS |
| TTATGTTTCGCAGGTTGATT+TGG | 0.403023 | 2_2:-13624934 | Msa0239340:intron |
| AGTGTCATCACAAACTGAAT+TGG | 0.403212 | 2_2:-13624052 | Msa0239340:CDS |
| TTGTGGTCTTATTAGTTCAT+TGG | 0.409883 | 2_2:-13624740 | Msa0239340:intron |
| CCCTTCGTTTGTGTCTCCAT+TGG | 0.411102 | 2_2:-13624530 | Msa0239340:CDS |
| CACATGGATTGTTGATCCCT+TGG | 0.431815 | 2_2:-13624669 | Msa0239340:CDS |
| ACTAAGCACGTCGAACATAA+AGG | 0.438472 | 2_2:-13625317 | Msa0239340:CDS |
| GGAAAGGTGCTTTCTTGAAT+GGG | 0.450317 | 2_2:-13624170 | Msa0239340:CDS |
| GATTAATAGTTTGCTTTACA+AGG | 0.459303 | 2_2:-13622385 | Msa0239340:intron |
| GTGTTCTATGAAACTGGATT+TGG | 0.463035 | 2_2:-13622208 | Msa0239340:CDS |
| TCTCTTTCCAGGGATGTGGC+AGG | 0.464025 | 2_2:-13621268 | Msa0239340:intron |
| ACAGCTTTATCCCACTCATA+AGG | 0.465552 | 2_2:-13624862 | Msa0239340:intron |
| CACTAGATGCGACCACCAAT+AGG | 0.470798 | 2_2:-13622407 | Msa0239340:CDS |
| GCTGTCATTGTTAGAGAAGC+TGG | 0.476874 | 2_2:-13621241 | Msa0239340:CDS |
| TTCTATGAAACTGGATTTGG+TGG | 0.477412 | 2_2:-13622205 | Msa0239340:CDS |
| TCATATCAGGTTATTCGAAA+AGG | 0.480344 | 2_2:-13625350 | Msa0239340:intron |
| TATTTAAGCAAAGTTACTTA+CGG | 0.481698 | 2_2:+13621202 | None:intergenic |
| TGGAATTGCATGTGGAAGAC+TGG | 0.486197 | 2_2:-13622233 | Msa0239340:CDS |
| TCCTGTGCTCTGAATCTTTG+TGG | 0.486333 | 2_2:-13622253 | Msa0239340:CDS |
| GGTCTCTCTTTCCAGGGATG+TGG | 0.490417 | 2_2:-13621272 | Msa0239340:intron |
| TGAACAGAAACGAGATGATA+CGG | 0.495443 | 2_2:+13625664 | None:intergenic |
| TGTTGAGTGTGGTGAGTGGC+CGG | 0.503182 | 2_2:-13625747 | Msa0239340:five_prime_UTR |
| TCGCCTACTAACGCACTAAC+CGG | 0.533062 | 2_2:+13625728 | None:intergenic |
| TTCACTGCAGTCCATGGGAA+AGG | 0.541447 | 2_2:-13624186 | Msa0239340:CDS |
| TAGTAGGCGAAAGGTAGGAC+AGG | 0.549833 | 2_2:-13625715 | Msa0239340:five_prime_UTR |
| TCAAGAAAGCACCTTTCCCA+TGG | 0.553403 | 2_2:+13624175 | None:intergenic |
| CAAACTATTAATCCTATTGG+TGG | 0.553541 | 2_2:+13622395 | None:intergenic |
| AGTACATAAAAGACACATGC+GGG | 0.560887 | 2_2:-13625774 | Msa0239340:five_prime_UTR |
| AGGCGAAAGGTAGGACAGGA+AGG | 0.565104 | 2_2:-13625711 | Msa0239340:five_prime_UTR |
| TGGATTGTTGATCCCTTGGA+TGG | 0.566106 | 2_2:-13624665 | Msa0239340:CDS |
| GTCGACGCTGCTCATAAAGC+TGG | 0.566423 | 2_2:-13625463 | Msa0239340:CDS |
| GGAACTACTAACTTTGTGCA+TGG | 0.566745 | 2_2:-13624644 | Msa0239340:CDS |
| TCCACAAAGATTCAGAGCAC+AGG | 0.570894 | 2_2:+13622252 | None:intergenic |
| GGCTGGAACAAAACGTGACA+AGG | 0.572747 | 2_2:-13622433 | Msa0239340:CDS |
| CTTTCCAGGGATGTGGCAGG+TGG | 0.578921 | 2_2:-13621265 | Msa0239340:intron |
| TGTAGTTCCAAAAGCAGCTG+TGG | 0.579976 | 2_2:+13624709 | None:intergenic |
| GAACAGAAACGAGATGATAC+GGG | 0.581281 | 2_2:+13625665 | None:intergenic |
| AAAGTTAGTAGTTCCATCCA+AGG | 0.583222 | 2_2:+13624652 | None:intergenic |
| TGGCCGGTTAGTGCGTTAGT+AGG | 0.587865 | 2_2:-13625731 | Msa0239340:five_prime_UTR |
| TGCGTTAGTAGGCGAAAGGT+AGG | 0.588989 | 2_2:-13625720 | Msa0239340:five_prime_UTR |
| GAACTACTAACTTTGTGCAT+GGG | 0.591023 | 2_2:-13624643 | Msa0239340:intron |
| CCAATGGAGACACAAACGAA+GGG | 0.595236 | 2_2:+13624530 | None:intergenic |
| TTGTACACAACACCGACTGT+TGG | 0.598803 | 2_2:+13624488 | None:intergenic |
| CTATCAGAACAGAACAAACA+TGG | 0.603365 | 2_2:-13625635 | Msa0239340:exon |
| GAACTCTCTTCTTGCAACTG+AGG | 0.612995 | 2_2:-13624028 | Msa0239340:intron |
| TCGGAATGAACCTTATGAGT+GGG | 0.614146 | 2_2:+13624852 | None:intergenic |
| ATCGGAATGAACCTTATGAG+TGG | 0.614350 | 2_2:+13624851 | None:intergenic |
| AATCTTTGTGGAATTGCATG+TGG | 0.620245 | 2_2:-13622241 | Msa0239340:CDS |
| AAACTGGATTTGGTGGTCCA+TGG | 0.624338 | 2_2:-13622198 | Msa0239340:intron |
| CAGCGTCGACAGCAGATGCG+AGG | 0.636535 | 2_2:+13625476 | None:intergenic |
| GTGAGATCTATTAGAATGAG+CGG | 0.638610 | 2_2:-13622277 | Msa0239340:CDS |
| GAAACGAGATGATACGGGAA+AGG | 0.639370 | 2_2:+13625670 | None:intergenic |
| CAATGGAGACACAAACGAAG+GGG | 0.643264 | 2_2:+13624531 | None:intergenic |
| ACAAACATGGCTGACAACAA+TGG | 0.645798 | 2_2:-13625622 | Msa0239340:intron |
| AAGTTAGTAGTTCCATCCAA+GGG | 0.647544 | 2_2:+13624653 | None:intergenic |
| GCACGTCGAACATAAAGGAT+CGG | 0.652028 | 2_2:-13625312 | Msa0239340:intron |
| ATTGGAAAAGTTCCAACAGT+CGG | 0.655715 | 2_2:-13624500 | Msa0239340:CDS |
| TTAGTGCGTTAGTAGGCGAA+AGG | 0.660502 | 2_2:-13625724 | Msa0239340:five_prime_UTR |
| CAAGGGATCAACAATCCATG+TGG | 0.665230 | 2_2:+13624670 | None:intergenic |
| AACTTACAGATGATCCCACA+TGG | 0.672174 | 2_2:-13624685 | Msa0239340:CDS |
| AAGGGATCAACAATCCATGT+GGG | 0.674293 | 2_2:+13624671 | None:intergenic |
| ACCAATGGAGACACAAACGA+AGG | 0.679016 | 2_2:+13624529 | None:intergenic |
| GTACAATCCAATAATCAATG+AGG | 0.684726 | 2_2:-13624471 | Msa0239340:intron |
| TAGTACATAAAAGACACATG+CGG | 0.724510 | 2_2:-13625775 | Msa0239340:five_prime_UTR |
| GTCATTGTTAGAGAAGCTGG+AGG | 0.743505 | 2_2:-13621238 | Msa0239340:CDS |
| GTACATAAAAGACACATGCG+GGG | 0.762189 | 2_2:-13625773 | Msa0239340:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATATTTTACAGAAT+TGG | + | chr2_2:13623438-13623457 | None:intergenic | 10.0% |
| !! | TTAAAAATATACAGATAATT+TGG | + | chr2_2:13623848-13623867 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | - | chr2_2:13625020-13625039 | Msa0239340:intron | 10.0% |
| !! | TTTAGGAATATTATTCAATA+AGG | - | chr2_2:13622666-13622685 | Msa0239340:intron | 15.0% |
| !! | TATTATTCAATAAGGATTAT+CGG | - | chr2_2:13622674-13622693 | Msa0239340:intron | 15.0% |
| !! | AAATACAAATGATAATTCTA+TGG | - | chr2_2:13623507-13623526 | Msa0239340:intron | 15.0% |
| !! | AGAAATAAAAAACTTATCTA+GGG | + | chr2_2:13624021-13624040 | None:intergenic | 15.0% |
| !! | TAGAAATAAAAAACTTATCT+AGG | + | chr2_2:13624022-13624041 | None:intergenic | 15.0% |
| !! | TAAAAAAATACATGTATACT+TGG | + | chr2_2:13624366-13624385 | None:intergenic | 15.0% |
| !! | AGTTAATTCAAAAAAATTCA+TGG | + | chr2_2:13624624-13624643 | None:intergenic | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | - | chr2_2:13625019-13625038 | Msa0239340:intron | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | - | chr2_2:13625021-13625040 | Msa0239340:intron | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | - | chr2_2:13625132-13625151 | Msa0239340:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | - | chr2_2:13625133-13625152 | Msa0239340:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | + | chr2_2:13625164-13625183 | None:intergenic | 15.0% |
| !! | ATAATAGCTTATGTTAAAAA+TGG | - | chr2_2:13625473-13625492 | Msa0239340:CDS | 15.0% |
| !!! | TTTTCTTATGTTAAATTGTA+AGG | - | chr2_2:13625586-13625605 | Msa0239340:intron | 15.0% |
| !! | ATTCTTTCTTATATCATATC+AGG | - | chr2_2:13621605-13621624 | Msa0239340:intron | 20.0% |
| !!! | TGATTTGAATTTGAGATTTT+AGG | + | chr2_2:13621718-13621737 | None:intergenic | 20.0% |
| !! | ACAATAATAAGTGAAATCAA+CGG | + | chr2_2:13621770-13621789 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTGATTATAAGC+TGG | + | chr2_2:13621983-13622002 | None:intergenic | 20.0% |
| !! | CAAAAACATTATATGATTAG+AGG | + | chr2_2:13622146-13622165 | None:intergenic | 20.0% |
| !!! | CATATAATGTTTTTGATTAG+TGG | - | chr2_2:13622151-13622170 | Msa0239340:intron | 20.0% |
| !!! | ATTTCTGATATTTTCTTTGA+TGG | - | chr2_2:13622356-13622375 | Msa0239340:intron | 20.0% |
| !!! | TTTCTGATATTTTCTTTGAT+GGG | - | chr2_2:13622357-13622376 | Msa0239340:intron | 20.0% |
| !! | TTAGTCCAATATGTAAATAT+GGG | + | chr2_2:13622396-13622415 | None:intergenic | 20.0% |
| !! | TTTAGTCCAATATGTAAATA+TGG | + | chr2_2:13622397-13622416 | None:intergenic | 20.0% |
| !! | CTAAAAATTATACTATCTGT+AGG | - | chr2_2:13622412-13622431 | Msa0239340:CDS | 20.0% |
| !!! | AGAAAAATGTAATGATTTTG+TGG | + | chr2_2:13622564-13622583 | None:intergenic | 20.0% |
| !!! | TAGTATGCAAATTGAAATTT+TGG | - | chr2_2:13622740-13622759 | Msa0239340:intron | 20.0% |
| !! | AATGATAATTCTATGGTATT+TGG | - | chr2_2:13623514-13623533 | Msa0239340:intron | 20.0% |
| !! | ATGATAATTCTATGGTATTT+GGG | - | chr2_2:13623515-13623534 | Msa0239340:intron | 20.0% |
| !! | GAGATTATTGCATAATAATA+AGG | - | chr2_2:13623537-13623556 | Msa0239340:intron | 20.0% |
| !! | TAAAACTTGGAATATTAAGT+GGG | + | chr2_2:13623990-13624009 | None:intergenic | 20.0% |
| !! | TTAAAACTTGGAATATTAAG+TGG | + | chr2_2:13623991-13624010 | None:intergenic | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | - | chr2_2:13624799-13624818 | Msa0239340:intron | 20.0% |
| !! | TCTAATATATTCGAAATGTA+CGG | + | chr2_2:13624904-13624923 | None:intergenic | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | - | chr2_2:13624993-13625012 | Msa0239340:intron | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | - | chr2_2:13624994-13625013 | Msa0239340:intron | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | + | chr2_2:13625165-13625184 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | - | chr2_2:13625166-13625185 | Msa0239340:intron | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | - | chr2_2:13624799-13624818 | Msa0239340:intron | 20.0% |
| !!! | GTTTTATGTATGAATCTTAT+AGG | - | chr2_2:13625543-13625562 | Msa0239340:intron | 20.0% |
| !! | TATTTAAGCAAAGTTACTTA+CGG | + | chr2_2:13625769-13625788 | None:intergenic | 20.0% |
| !!! | AATTGATAGTGATAGATGAA+GGG | + | chr2_2:13621575-13621594 | None:intergenic | 25.0% |
| !!! | AAATTGATAGTGATAGATGA+AGG | + | chr2_2:13621576-13621595 | None:intergenic | 25.0% |
| ! | GAGAAAAAATAGAAGAGAAT+GGG | + | chr2_2:13621689-13621708 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATAGAAGAGAA+TGG | + | chr2_2:13621690-13621709 | None:intergenic | 25.0% |
| !!! | TTGAATTTGAGATTTTAGGA+TGG | + | chr2_2:13621714-13621733 | None:intergenic | 25.0% |
| ! | AGAAATAAGTAAGTAGTTTG+AGG | - | chr2_2:13621864-13621883 | Msa0239340:intron | 25.0% |
| !! | TTACTTGTTAGTAATGTGAT+TGG | - | chr2_2:13621924-13621943 | Msa0239340:intron | 25.0% |
| ! | TTATATGATTAGAGGAAGAT+CGG | + | chr2_2:13622138-13622157 | None:intergenic | 25.0% |
| !!! | TTTTTGATTAGTGGCTATTA+TGG | - | chr2_2:13622160-13622179 | Msa0239340:intron | 25.0% |
| !! | TTCTGATATTTTCTTTGATG+GGG | - | chr2_2:13622358-13622377 | Msa0239340:intron | 25.0% |
| !! | ATATGTAAATATGGGAGTAT+CGG | + | chr2_2:13622388-13622407 | None:intergenic | 25.0% |
| ! | ATACTCCCATATTTACATAT+TGG | - | chr2_2:13622388-13622407 | Msa0239340:CDS | 25.0% |
| ! | CTTAAAATGATTCTTCAAGA+AGG | + | chr2_2:13622534-13622553 | None:intergenic | 25.0% |
| ! | GACATTGAAGTGATTAATTT+AGG | - | chr2_2:13622649-13622668 | Msa0239340:intron | 25.0% |
| ! | TTTATTATTGTTCATGTGGT+TGG | + | chr2_2:13623134-13623153 | None:intergenic | 25.0% |
| !!! | AAGCTTTATTATTGTTCATG+TGG | + | chr2_2:13623138-13623157 | None:intergenic | 25.0% |
| ! | ATAACAGTATAAGGCAAATT+AGG | + | chr2_2:13623187-13623206 | None:intergenic | 25.0% |
| ! | AAGTCATGTATAACAGTATA+AGG | + | chr2_2:13623196-13623215 | None:intergenic | 25.0% |
| ! | CAATTGTATAGGAAATATCA+AGG | + | chr2_2:13623381-13623400 | None:intergenic | 25.0% |
| ! | CTTGATATTTCCTATACAAT+TGG | - | chr2_2:13623379-13623398 | Msa0239340:intron | 25.0% |
| ! | TACTTCTTTACCAATTGTAT+AGG | + | chr2_2:13623392-13623411 | None:intergenic | 25.0% |
| ! | GATTATAAATAAAGATGCAG+AGG | + | chr2_2:13623690-13623709 | None:intergenic | 25.0% |
| !!! | AAATGATTTTAAAGCGTCTT+AGG | - | chr2_2:13623921-13623940 | Msa0239340:intron | 25.0% |
| !!! | AATGATTTTAAAGCGTCTTA+GGG | - | chr2_2:13623922-13623941 | Msa0239340:intron | 25.0% |
| ! | AAAATACATGTATACTTGGT+GGG | + | chr2_2:13624362-13624381 | None:intergenic | 25.0% |
| ! | AAAAATACATGTATACTTGG+TGG | + | chr2_2:13624363-13624382 | None:intergenic | 25.0% |
| ! | TGGAAATCTTACTAATTGTA+AGG | + | chr2_2:13624389-13624408 | None:intergenic | 25.0% |
| ! | AATTAGAATTCCAAGCATTA+TGG | + | chr2_2:13624409-13624428 | None:intergenic | 25.0% |
| ! | ATAATGCTTGGAATTCTAAT+TGG | - | chr2_2:13624408-13624427 | Msa0239340:intron | 25.0% |
| !!! | AATATCAAGATTATTGGTTC+AGG | - | chr2_2:13624436-13624455 | Msa0239340:intron | 25.0% |
| ! | AAGCAAACTATTAATCCTAT+TGG | + | chr2_2:13624579-13624598 | None:intergenic | 25.0% |
| !!! | GATTAATAGTTTGCTTTACA+AGG | - | chr2_2:13624583-13624602 | Msa0239340:intron | 25.0% |
| ! | CTAATATATTCGAAATGTAC+GGG | + | chr2_2:13624903-13624922 | None:intergenic | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | - | chr2_2:13624949-13624968 | Msa0239340:intron | 25.0% |
| !!! | AAAACCTTTAAAACGAATCA+GGG | + | chr2_2:13625528-13625547 | None:intergenic | 25.0% |
| !!! | TAAAACCTTTAAAACGAATC+AGG | + | chr2_2:13625529-13625548 | None:intergenic | 25.0% |
| TAGTACATAAAAGACACATG+CGG | - | chr2_2:13621193-13621212 | Msa0239340:three_prime_UTR | 30.0% | |
| TCATATCAGGTTATTCGAAA+AGG | - | chr2_2:13621618-13621637 | Msa0239340:intron | 30.0% | |
| ATAATAAGTGAAATCAACGG+CGG | + | chr2_2:13621767-13621786 | None:intergenic | 30.0% | |
| ! | ATATCTTTGTTATGTTTCGC+AGG | - | chr2_2:13622025-13622044 | Msa0239340:intron | 30.0% |
| CTGAAGTTCATTTGTATTTG+TGG | - | chr2_2:13622211-13622230 | Msa0239340:CDS | 30.0% | |
| !! | TTGTGGTCTTATTAGTTCAT+TGG | - | chr2_2:13622228-13622247 | Msa0239340:CDS | 30.0% |
| ! | TTTTCCAATTGTAAGACCAA+TGG | + | chr2_2:13622457-13622476 | None:intergenic | 30.0% |
| GTACAATCCAATAATCAATG+AGG | - | chr2_2:13622497-13622516 | Msa0239340:intron | 30.0% | |
| AAATCTCCAAAAAGAAGCTT+TGG | + | chr2_2:13622629-13622648 | None:intergenic | 30.0% | |
| ATTTGCATACTAAGCAATGA+AGG | + | chr2_2:13622732-13622751 | None:intergenic | 30.0% | |
| ATTGATACAGGTACATGATA+AGG | + | chr2_2:13623053-13623072 | None:intergenic | 30.0% | |
| AATGACCAACAAAATCAGAA+TGG | - | chr2_2:13623079-13623098 | Msa0239340:intron | 30.0% | |
| ! | AAGAACCATTCTGATTTTGT+TGG | + | chr2_2:13623087-13623106 | None:intergenic | 30.0% |
| TTATACCCTCAAAGTTTATG+TGG | - | chr2_2:13623453-13623472 | Msa0239340:intron | 30.0% | |
| ATAAGAAAGTAACTGCAGAA+AGG | - | chr2_2:13623586-13623605 | Msa0239340:intron | 30.0% | |
| ! | ACATTGGGTATTTTGTATGT+GGG | + | chr2_2:13623657-13623676 | None:intergenic | 30.0% |
| AATAAAGATGCAGAGGAAAA+GGG | + | chr2_2:13623683-13623702 | None:intergenic | 30.0% | |
| AAATAAAGATGCAGAGGAAA+AGG | + | chr2_2:13623684-13623703 | None:intergenic | 30.0% | |
| ATTCTATAACTTATGCCCTT+AGG | - | chr2_2:13623799-13623818 | Msa0239340:intron | 30.0% | |
| TGGATATCAGTGTTAGATAT+AGG | + | chr2_2:13623828-13623847 | None:intergenic | 30.0% | |
| TAGGGAATAAGCTTAAAACT+TGG | + | chr2_2:13624003-13624022 | None:intergenic | 30.0% | |
| GCTTATCAAACACTTATCTA+GGG | + | chr2_2:13624057-13624076 | None:intergenic | 30.0% | |
| AGCTTATCAAACACTTATCT+AGG | + | chr2_2:13624058-13624077 | None:intergenic | 30.0% | |
| AATCACTAATCCCACTTAAA+AGG | - | chr2_2:13624323-13624342 | Msa0239340:intron | 30.0% | |
| ! | AAATACATGTATACTTGGTG+GGG | + | chr2_2:13624361-13624380 | None:intergenic | 30.0% |
| AGTAAGATTTCCATAATGCT+TGG | - | chr2_2:13624396-13624415 | Msa0239340:intron | 30.0% | |
| GCATGGAATATCAAGATTAT+TGG | - | chr2_2:13624430-13624449 | Msa0239340:intron | 30.0% | |
| !! | CAAACAGTCATTGATTCAAA+AGG | + | chr2_2:13624481-13624500 | None:intergenic | 30.0% |
| CAAACTATTAATCCTATTGG+TGG | + | chr2_2:13624576-13624595 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | + | chr2_2:13624807-13624826 | None:intergenic | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | + | chr2_2:13625120-13625139 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | + | chr2_2:13625121-13625140 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | + | chr2_2:13624807-13624826 | None:intergenic | 30.0% | |
| ! | TGTACATCCGGAATTATTTT+AGG | - | chr2_2:13625412-13625431 | Msa0239340:intron | 30.0% |
| !! | GTACATCCGGAATTATTTTA+GGG | - | chr2_2:13625413-13625432 | Msa0239340:intron | 30.0% |
| TATTAGAGAAAAAGTTCCCT+CGG | + | chr2_2:13625439-13625458 | None:intergenic | 30.0% | |
| !! | AAACCTTTAAAACGAATCAG+GGG | + | chr2_2:13625527-13625546 | None:intergenic | 30.0% |
| AGTACATAAAAGACACATGC+GGG | - | chr2_2:13621194-13621213 | Msa0239340:three_prime_UTR | 35.0% | |
| TGAACAGAAACGAGATGATA+CGG | + | chr2_2:13621307-13621326 | None:intergenic | 35.0% | |
| CTATCAGAACAGAACAAACA+TGG | - | chr2_2:13621333-13621352 | Msa0239340:intron | 35.0% | |
| !! | CGTTTCAGTTTGTTGTAGTA+TGG | - | chr2_2:13621394-13621413 | Msa0239340:intron | 35.0% |
| !! | TTATGTTTCGCAGGTTGATT+TGG | - | chr2_2:13622034-13622053 | Msa0239340:intron | 35.0% |
| TATGGCTACTTATCAGTTAC+CGG | - | chr2_2:13622178-13622197 | Msa0239340:intron | 35.0% | |
| GAACTTCAGCAAATATACAC+CGG | + | chr2_2:13622200-13622219 | None:intergenic | 35.0% | |
| AAGTTAGTAGTTCCATCCAA+GGG | + | chr2_2:13622318-13622337 | None:intergenic | 35.0% | |
| AAAGTTAGTAGTTCCATCCA+AGG | + | chr2_2:13622319-13622338 | None:intergenic | 35.0% | |
| GAACTACTAACTTTGTGCAT+GGG | - | chr2_2:13622325-13622344 | Msa0239340:intron | 35.0% | |
| ATTGGAAAAGTTCCAACAGT+CGG | - | chr2_2:13622468-13622487 | Msa0239340:intron | 35.0% | |
| ATCCAATAATCAATGAGGTG+TGG | - | chr2_2:13622502-13622521 | Msa0239340:intron | 35.0% | |
| ! | TACCACACCTCATTGATTAT+TGG | + | chr2_2:13622507-13622526 | None:intergenic | 35.0% |
| !! | AAAAAGAAGCTTTGGAGCAA+TGG | + | chr2_2:13622621-13622640 | None:intergenic | 35.0% |
| ! | ATTGCTCCAAAGCTTCTTTT+TGG | - | chr2_2:13622620-13622639 | Msa0239340:intron | 35.0% |
| TTCAATAAGGATTATCGGCA+TGG | - | chr2_2:13622679-13622698 | Msa0239340:intron | 35.0% | |
| TTGAATGGGAACCCTATAAA+AGG | - | chr2_2:13622812-13622831 | Msa0239340:intron | 35.0% | |
| TGTGATGACACTGAAATTCA+AGG | + | chr2_2:13622908-13622927 | None:intergenic | 35.0% | |
| AGTGTCATCACAAACTGAAT+TGG | - | chr2_2:13622916-13622935 | Msa0239340:intron | 35.0% | |
| TTAGGTGTTAGTCCAAATAC+AGG | + | chr2_2:13623169-13623188 | None:intergenic | 35.0% | |
| CAGATTATGACAGTGTCATA+GGG | + | chr2_2:13623239-13623258 | None:intergenic | 35.0% | |
| TCAGATTATGACAGTGTCAT+AGG | + | chr2_2:13623240-13623259 | None:intergenic | 35.0% | |
| TGTTAGAATTTCTACACTCG+TGG | - | chr2_2:13623278-13623297 | Msa0239340:intron | 35.0% | |
| ATCAGCCACATAAACTTTGA+GGG | + | chr2_2:13623461-13623480 | None:intergenic | 35.0% | |
| AATCAGCCACATAAACTTTG+AGG | + | chr2_2:13623462-13623481 | None:intergenic | 35.0% | |
| !!! | TTTTGTATGTGGGTTGGTTT+GGG | + | chr2_2:13623647-13623666 | None:intergenic | 35.0% |
| !!! | ATTTTGTATGTGGGTTGGTT+TGG | + | chr2_2:13623648-13623667 | None:intergenic | 35.0% |
| ! | GACATTGGGTATTTTGTATG+TGG | + | chr2_2:13623658-13623677 | None:intergenic | 35.0% |
| TGTAACTGCTATAGTGAGTT+AGG | + | chr2_2:13623712-13623731 | None:intergenic | 35.0% | |
| GTTAGATATAGGACTCCTAA+GGG | + | chr2_2:13623817-13623836 | None:intergenic | 35.0% | |
| TGTTAGATATAGGACTCCTA+AGG | + | chr2_2:13623818-13623837 | None:intergenic | 35.0% | |
| !! | TGATCACGTTGTAACTTGTT+GGG | + | chr2_2:13624276-13624295 | None:intergenic | 35.0% |
| !! | TGGGGATAAACCTTTTAAGT+GGG | + | chr2_2:13624336-13624355 | None:intergenic | 35.0% |
| ! | ATGGGGATAAACCTTTTAAG+TGG | + | chr2_2:13624337-13624356 | None:intergenic | 35.0% |
| AATAGATCTCACCTGACATA+TGG | + | chr2_2:13624683-13624702 | None:intergenic | 35.0% | |
| GTGAGATCTATTAGAATGAG+CGG | - | chr2_2:13624691-13624710 | Msa0239340:CDS | 35.0% | |
| AATCTTTGTGGAATTGCATG+TGG | - | chr2_2:13624727-13624746 | Msa0239340:CDS | 35.0% | |
| GTGTTCTATGAAACTGGATT+TGG | - | chr2_2:13624760-13624779 | Msa0239340:intron | 35.0% | |
| TTCTATGAAACTGGATTTGG+TGG | - | chr2_2:13624763-13624782 | Msa0239340:intron | 35.0% | |
| ATATATTCGAAATGTACGGG+TGG | + | chr2_2:13624900-13624919 | None:intergenic | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | - | chr2_2:13624997-13625016 | Msa0239340:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+AGG | - | chr2_2:13625029-13625048 | Msa0239340:intron | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | - | chr2_2:13625030-13625049 | Msa0239340:intron | 35.0% | |
| ! | GAGCAATTTTCGAAATGTAC+GGG | + | chr2_2:13625302-13625321 | None:intergenic | 35.0% |
| ! | GGAGCAATTTTCGAAATGTA+CGG | + | chr2_2:13625303-13625322 | None:intergenic | 35.0% |
| ! | CTTTTTCTGAACTGTACATC+CGG | - | chr2_2:13625400-13625419 | Msa0239340:intron | 35.0% |
| AAAAATGGCCTTTGACCTAA+CGG | - | chr2_2:13625488-13625507 | Msa0239340:CDS | 35.0% | |
| TAACATTTGCTTTAGCCTAG+TGG | - | chr2_2:13625644-13625663 | Msa0239340:five_prime_UTR | 35.0% | |
| GTACATAAAAGACACATGCG+GGG | - | chr2_2:13621195-13621214 | Msa0239340:three_prime_UTR | 40.0% | |
| GAACAGAAACGAGATGATAC+GGG | + | chr2_2:13621306-13621325 | None:intergenic | 40.0% | |
| ACAAACATGGCTGACAACAA+TGG | - | chr2_2:13621346-13621365 | Msa0239340:intron | 40.0% | |
| ATAGATGAAGGGAGAAAGGA+AGG | + | chr2_2:13621564-13621583 | None:intergenic | 40.0% | |
| AGTGATAGATGAAGGGAGAA+AGG | + | chr2_2:13621568-13621587 | None:intergenic | 40.0% | |
| ATGTTCGACGTGCTTAGTTT+GGG | + | chr2_2:13621649-13621668 | None:intergenic | 40.0% | |
| TATGTTCGACGTGCTTAGTT+TGG | + | chr2_2:13621650-13621669 | None:intergenic | 40.0% | |
| ACTAAGCACGTCGAACATAA+AGG | - | chr2_2:13621651-13621670 | Msa0239340:intron | 40.0% | |
| CTTGTTCTCTGTTCTTGCAA+AGG | - | chr2_2:13621893-13621912 | Msa0239340:intron | 40.0% | |
| ! | ACAGCTTTATCCCACTCATA+AGG | - | chr2_2:13622106-13622125 | Msa0239340:intron | 40.0% |
| TCGGAATGAACCTTATGAGT+GGG | + | chr2_2:13622119-13622138 | None:intergenic | 40.0% | |
| ATCGGAATGAACCTTATGAG+TGG | + | chr2_2:13622120-13622139 | None:intergenic | 40.0% | |
| AACTTACAGATGATCCCACA+TGG | - | chr2_2:13622283-13622302 | Msa0239340:intron | 40.0% | |
| AAGGGATCAACAATCCATGT+GGG | + | chr2_2:13622300-13622319 | None:intergenic | 40.0% | |
| GGAACTACTAACTTTGTGCA+TGG | - | chr2_2:13622324-13622343 | Msa0239340:intron | 40.0% | |
| !! | GTCTCCATTGGTCTTACAAT+TGG | - | chr2_2:13622450-13622469 | Msa0239340:intron | 40.0% |
| GCTATGGCTATATGATCAGA+AGG | + | chr2_2:13622593-13622612 | None:intergenic | 40.0% | |
| ! | GGATTATCGGCATGGAATTT+TGG | - | chr2_2:13622687-13622706 | Msa0239340:intron | 40.0% |
| !! | GGAAAGGTGCTTTCTTGAAT+GGG | - | chr2_2:13622798-13622817 | Msa0239340:intron | 40.0% |
| ! | CAGAGGACACACCTTTTATA+GGG | + | chr2_2:13622826-13622845 | None:intergenic | 40.0% |
| GATCGAAAGATGAAAACCAG+AGG | + | chr2_2:13622843-13622862 | None:intergenic | 40.0% | |
| ACAGGTACATGATAAGGACA+GGG | + | chr2_2:13623047-13623066 | None:intergenic | 40.0% | |
| TACAGGTACATGATAAGGAC+AGG | + | chr2_2:13623048-13623067 | None:intergenic | 40.0% | |
| CATGTACCTGTATCAATGTG+TGG | - | chr2_2:13623056-13623075 | Msa0239340:intron | 40.0% | |
| GTCATTCCACACATTGATAC+AGG | + | chr2_2:13623065-13623084 | None:intergenic | 40.0% | |
| ! | GCTTGTTAGTCTCCTGTATT+TGG | - | chr2_2:13623154-13623173 | Msa0239340:intron | 40.0% |
| GAAATGAGATTCTTCAGAGC+AGG | + | chr2_2:13623416-13623435 | None:intergenic | 40.0% | |
| TGTGGCTGATTGTTAGATAC+TGG | - | chr2_2:13623471-13623490 | Msa0239340:intron | 40.0% | |
| ! | TGGGTATTTTGTATGTGGGT+TGG | + | chr2_2:13623653-13623672 | None:intergenic | 40.0% |
| TTAGGGCAGACATGTTAGAT+TGG | - | chr2_2:13623939-13623958 | Msa0239340:intron | 40.0% | |
| CAGATAGCAATCAAGACAGA+AGG | + | chr2_2:13623967-13623986 | None:intergenic | 40.0% | |
| !! | ATCACGTTGTAACTTGTTGG+GGG | + | chr2_2:13624274-13624293 | None:intergenic | 40.0% |
| !! | GATCACGTTGTAACTTGTTG+GGG | + | chr2_2:13624275-13624294 | None:intergenic | 40.0% |
| ! | GTGATCACGTTGTAACTTGT+TGG | + | chr2_2:13624277-13624296 | None:intergenic | 40.0% |
| ! | ATGTATACTTGGTGGGGAAT+GGG | + | chr2_2:13624355-13624374 | None:intergenic | 40.0% |
| GCTTGGAATTCTAATTGGCA+TGG | - | chr2_2:13624413-13624432 | Msa0239340:intron | 40.0% | |
| !! | TTTTTCCCTTCTGAAAGAGC+AGG | - | chr2_2:13624514-13624533 | Msa0239340:CDS | 40.0% |
| TCACCTGACATATGGAAACA+GGG | + | chr2_2:13624675-13624694 | None:intergenic | 40.0% | |
| CTGGATGTGTTCTATGAAAC+TGG | - | chr2_2:13624754-13624773 | Msa0239340:intron | 40.0% | |
| TGCAGGAAATACTCATACCA+TGG | + | chr2_2:13624790-13624809 | None:intergenic | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | - | chr2_2:13624819-13624838 | Msa0239340:intron | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | - | chr2_2:13624819-13624838 | Msa0239340:intron | 40.0% | |
| ! | CAATTTTCGAAATGTACGGG+TGG | + | chr2_2:13625299-13625318 | None:intergenic | 40.0% |
| ! | TTGCTCCAGAAGTGTATTTC+CGG | - | chr2_2:13625316-13625335 | Msa0239340:CDS | 40.0% |
| ATTGTTCGGAAAGACACATC+TGG | - | chr2_2:13625350-13625369 | Msa0239340:intron | 40.0% | |
| AGTCTTAACCGTTAGGTCAA+AGG | + | chr2_2:13625499-13625518 | None:intergenic | 40.0% | |
| !! | AGACCCCTGATTCGTTTTAA+AGG | - | chr2_2:13625521-13625540 | Msa0239340:intron | 40.0% |
| ATTTGCTTTAGCCTAGTGGT+TGG | - | chr2_2:13625648-13625667 | Msa0239340:five_prime_UTR | 40.0% | |
| !! | TAGCCTAGTGGTTGGTTTAT+TGG | - | chr2_2:13625656-13625675 | Msa0239340:five_prime_UTR | 40.0% |
| !! | AGCCTAGTGGTTGGTTTATT+GGG | - | chr2_2:13625657-13625676 | Msa0239340:five_prime_UTR | 40.0% |
| ATCCCAATAAACCAACCACT+AGG | + | chr2_2:13625662-13625681 | None:intergenic | 40.0% | |
| !! | TAGTGGTTGGTTTATTGGGA+TGG | - | chr2_2:13625661-13625680 | Msa0239340:five_prime_UTR | 40.0% |
| GAAAGAGAGACCATGTGATT+AGG | + | chr2_2:13625688-13625707 | None:intergenic | 40.0% | |
| !! | GTTTTGTTGAGTGTGGTGAG+TGG | - | chr2_2:13621217-13621236 | Msa0239340:exon | 45.0% |
| TTAGTGCGTTAGTAGGCGAA+AGG | - | chr2_2:13621244-13621263 | Msa0239340:CDS | 45.0% | |
| GAAACGAGATGATACGGGAA+AGG | + | chr2_2:13621301-13621320 | None:intergenic | 45.0% | |
| GCACGTCGAACATAAAGGAT+CGG | - | chr2_2:13621656-13621675 | Msa0239340:intron | 45.0% | |
| !! | GAAGAAACCACAGCTGCTTT+TGG | - | chr2_2:13622252-13622271 | Msa0239340:CDS | 45.0% |
| TGTAGTTCCAAAAGCAGCTG+TGG | + | chr2_2:13622262-13622281 | None:intergenic | 45.0% | |
| CAAGGGATCAACAATCCATG+TGG | + | chr2_2:13622301-13622320 | None:intergenic | 45.0% | |
| ! | CACATGGATTGTTGATCCCT+TGG | - | chr2_2:13622299-13622318 | Msa0239340:intron | 45.0% |
| TGGATTGTTGATCCCTTGGA+TGG | - | chr2_2:13622303-13622322 | Msa0239340:intron | 45.0% | |
| CAATGGAGACACAAACGAAG+GGG | + | chr2_2:13622440-13622459 | None:intergenic | 45.0% | |
| CCAATGGAGACACAAACGAA+GGG | + | chr2_2:13622441-13622460 | None:intergenic | 45.0% | |
| ACCAATGGAGACACAAACGA+AGG | + | chr2_2:13622442-13622461 | None:intergenic | 45.0% | |
| ! | TTGTACACAACACCGACTGT+TGG | + | chr2_2:13622483-13622502 | None:intergenic | 45.0% |
| !! | AGAAGCTTTGGAGCAATGGT+TGG | + | chr2_2:13622617-13622636 | None:intergenic | 45.0% |
| ! | TAGCTTTTCACTGCAGTCCA+TGG | - | chr2_2:13622776-13622795 | Msa0239340:intron | 45.0% |
| ! | AGCTTTTCACTGCAGTCCAT+GGG | - | chr2_2:13622777-13622796 | Msa0239340:intron | 45.0% |
| !! | TCAAGAAAGCACCTTTCCCA+TGG | + | chr2_2:13622796-13622815 | None:intergenic | 45.0% |
| !! | GGGAAAGGTGCTTTCTTGAA+TGG | - | chr2_2:13622797-13622816 | Msa0239340:intron | 45.0% |
| ! | CCAGAGGACACACCTTTTAT+AGG | + | chr2_2:13622827-13622846 | None:intergenic | 45.0% |
| ! | CCTATAAAAGGTGTGTCCTC+TGG | - | chr2_2:13622824-13622843 | Msa0239340:intron | 45.0% |
| GAACTCTCTTCTTGCAACTG+AGG | - | chr2_2:13622940-13622959 | Msa0239340:intron | 45.0% | |
| CAGAAAGGTAACCAACCTCT+AGG | - | chr2_2:13623601-13623620 | Msa0239340:intron | 45.0% | |
| AGAGGAAAAGGGAGGACATT+GGG | + | chr2_2:13623672-13623691 | None:intergenic | 45.0% | |
| AAAGATGCAGAGGAAAAGGG+AGG | + | chr2_2:13623680-13623699 | None:intergenic | 45.0% | |
| !! | TCACGTTGTAACTTGTTGGG+GGG | + | chr2_2:13624273-13624292 | None:intergenic | 45.0% |
| CAACGTGATCACTGATCAGT+TGG | - | chr2_2:13624285-13624304 | Msa0239340:intron | 45.0% | |
| ! | TGTATACTTGGTGGGGAATG+GGG | + | chr2_2:13624354-13624373 | None:intergenic | 45.0% |
| ! | CATGTATACTTGGTGGGGAA+TGG | + | chr2_2:13624356-13624375 | None:intergenic | 45.0% |
| CTACCCTGTTTCCATATGTC+AGG | - | chr2_2:13624669-13624688 | Msa0239340:CDS | 45.0% | |
| CTCACCTGACATATGGAAAC+AGG | + | chr2_2:13624676-13624695 | None:intergenic | 45.0% | |
| ! | TCCTGTGCTCTGAATCTTTG+TGG | - | chr2_2:13624715-13624734 | Msa0239340:CDS | 45.0% |
| TCCACAAAGATTCAGAGCAC+AGG | + | chr2_2:13624719-13624738 | None:intergenic | 45.0% | |
| TGGAATTGCATGTGGAAGAC+TGG | - | chr2_2:13624735-13624754 | Msa0239340:intron | 45.0% | |
| !! | AAACTGGATTTGGTGGTCCA+TGG | - | chr2_2:13624770-13624789 | Msa0239340:intron | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | + | chr2_2:13624851-13624870 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | - | chr2_2:13624851-13624870 | Msa0239340:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | - | chr2_2:13624852-13624871 | Msa0239340:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | - | chr2_2:13624859-13624878 | Msa0239340:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | + | chr2_2:13624891-13624910 | None:intergenic | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | - | chr2_2:13625066-13625085 | Msa0239340:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | - | chr2_2:13625067-13625086 | Msa0239340:intron | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | - | chr2_2:13625085-13625104 | Msa0239340:intron | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | + | chr2_2:13624851-13624870 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | - | chr2_2:13624851-13624870 | Msa0239340:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | - | chr2_2:13624852-13624871 | Msa0239340:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | - | chr2_2:13624859-13624878 | Msa0239340:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | + | chr2_2:13624891-13624910 | None:intergenic | 45.0% | |
| ! | TCCAGAAGTGTATTTCCGGA+CGG | - | chr2_2:13625320-13625339 | Msa0239340:CDS | 45.0% |
| ! | CGAACAATTTTTGTCCCGTC+CGG | + | chr2_2:13625338-13625357 | None:intergenic | 45.0% |
| CGGACGGGACAAAAATTGTT+CGG | - | chr2_2:13625336-13625355 | Msa0239340:CDS | 45.0% | |
| CCTCGGCCCTAAAATAATTC+CGG | + | chr2_2:13625422-13625441 | None:intergenic | 45.0% | |
| !!! | CGGAATTATTTTAGGGCCGA+GGG | - | chr2_2:13625420-13625439 | Msa0239340:intron | 45.0% |
| GGTCTTGAGTCTTAACCGTT+AGG | + | chr2_2:13625506-13625525 | None:intergenic | 45.0% | |
| TTGGGATGGTCCTAATCACA+TGG | - | chr2_2:13625675-13625694 | Msa0239340:five_prime_UTR | 45.0% | |
| ATCACATGGTCTCTCTTTCC+AGG | - | chr2_2:13625689-13625708 | Msa0239340:five_prime_UTR | 45.0% | |
| TCACATGGTCTCTCTTTCCA+GGG | - | chr2_2:13625690-13625709 | Msa0239340:five_prime_UTR | 45.0% | |
| GCTGTCATTGTTAGAGAAGC+TGG | - | chr2_2:13625727-13625746 | Msa0239340:five_prime_UTR | 45.0% | |
| GTCATTGTTAGAGAAGCTGG+AGG | - | chr2_2:13625730-13625749 | Msa0239340:five_prime_UTR | 45.0% | |
| !!! | ATGCGGGGTTTTGTTGAGTG+TGG | - | chr2_2:13621210-13621229 | Msa0239340:exon | 50.0% |
| TCGCCTACTAACGCACTAAC+CGG | + | chr2_2:13621243-13621262 | None:intergenic | 50.0% | |
| TGCGTTAGTAGGCGAAAGGT+AGG | - | chr2_2:13621248-13621267 | Msa0239340:CDS | 50.0% | |
| TAGTAGGCGAAAGGTAGGAC+AGG | - | chr2_2:13621253-13621272 | Msa0239340:CDS | 50.0% | |
| ACGAGAGAGAGAGAGAGAGA+GGG | + | chr2_2:13621377-13621396 | None:intergenic | 50.0% | |
| AACGAGAGAGAGAGAGAGAG+AGG | + | chr2_2:13621378-13621397 | None:intergenic | 50.0% | |
| CCCTTCGTTTGTGTCTCCAT+TGG | - | chr2_2:13622438-13622457 | Msa0239340:intron | 50.0% | |
| TGGAGCAATGGTTGGAGCTA+TGG | + | chr2_2:13622609-13622628 | None:intergenic | 50.0% | |
| TTCACTGCAGTCCATGGGAA+AGG | - | chr2_2:13622782-13622801 | Msa0239340:intron | 50.0% | |
| GCTCTCTAACTCCTAGAGGT+TGG | + | chr2_2:13623615-13623634 | None:intergenic | 50.0% | |
| CTAGGCTCTCTAACTCCTAG+AGG | + | chr2_2:13623619-13623638 | None:intergenic | 50.0% | |
| CAGAGGAAAAGGGAGGACAT+TGG | + | chr2_2:13623673-13623692 | None:intergenic | 50.0% | |
| TCCAGCCTGCTCTTTCAGAA+GGG | + | chr2_2:13624522-13624541 | None:intergenic | 50.0% | |
| TTCCAGCCTGCTCTTTCAGA+AGG | + | chr2_2:13624523-13624542 | None:intergenic | 50.0% | |
| GGCTGGAACAAAACGTGACA+AGG | - | chr2_2:13624535-13624554 | Msa0239340:CDS | 50.0% | |
| CACTAGATGCGACCACCAAT+AGG | - | chr2_2:13624561-13624580 | Msa0239340:intron | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | + | chr2_2:13624845-13624864 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | + | chr2_2:13624846-13624865 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | + | chr2_2:13624855-13624874 | None:intergenic | 50.0% | |
| GGGAGAGAAGGGAAGATTGA+GGG | - | chr2_2:13625041-13625060 | Msa0239340:intron | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | - | chr2_2:13625042-13625061 | Msa0239340:intron | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | - | chr2_2:13625062-13625081 | Msa0239340:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | - | chr2_2:13625068-13625087 | Msa0239340:intron | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | - | chr2_2:13625084-13625103 | Msa0239340:intron | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | + | chr2_2:13625094-13625113 | None:intergenic | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | + | chr2_2:13624845-13624864 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | + | chr2_2:13624846-13624865 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | + | chr2_2:13624855-13624874 | None:intergenic | 50.0% | |
| ! | CCAGAAGTGTATTTCCGGAC+GGG | - | chr2_2:13625321-13625340 | Msa0239340:CDS | 50.0% |
| !!! | CCGGAATTATTTTAGGGCCG+AGG | - | chr2_2:13625419-13625438 | Msa0239340:intron | 50.0% |
| TGTTGAGTGTGGTGAGTGGC+CGG | - | chr2_2:13621221-13621240 | Msa0239340:CDS | 55.0% | |
| TGGCCGGTTAGTGCGTTAGT+AGG | - | chr2_2:13621237-13621256 | Msa0239340:CDS | 55.0% | |
| AGGCGAAAGGTAGGACAGGA+AGG | - | chr2_2:13621257-13621276 | Msa0239340:CDS | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+TGG | + | chr2_2:13621374-13621393 | None:intergenic | 55.0% | |
| GTCGACGCTGCTCATAAAGC+TGG | - | chr2_2:13621505-13621524 | Msa0239340:intron | 55.0% | |
| !! | GGGTTGGTTTGGGAGAGACT+AGG | + | chr2_2:13623637-13623656 | None:intergenic | 55.0% |
| ! | TCCCTTCTGAAAGAGCAGGC+TGG | - | chr2_2:13624518-13624537 | Msa0239340:CDS | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | - | chr2_2:13624836-13624855 | Msa0239340:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | - | chr2_2:13624837-13624856 | Msa0239340:intron | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+AGG | - | chr2_2:13625040-13625059 | Msa0239340:intron | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | - | chr2_2:13625051-13625070 | Msa0239340:intron | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | - | chr2_2:13625061-13625080 | Msa0239340:intron | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | - | chr2_2:13625077-13625096 | Msa0239340:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | - | chr2_2:13625088-13625107 | Msa0239340:intron | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | - | chr2_2:13624836-13624855 | Msa0239340:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | - | chr2_2:13624837-13624856 | Msa0239340:intron | 55.0% | |
| CCCGTCCGGAAATACACTTC+TGG | + | chr2_2:13625324-13625343 | None:intergenic | 55.0% | |
| GGTCTCTCTTTCCAGGGATG+TGG | - | chr2_2:13625696-13625715 | Msa0239340:five_prime_UTR | 55.0% | |
| TCTCTTTCCAGGGATGTGGC+AGG | - | chr2_2:13625700-13625719 | Msa0239340:five_prime_UTR | 55.0% | |
| CTTTCCAGGGATGTGGCAGG+TGG | - | chr2_2:13625703-13625722 | Msa0239340:five_prime_UTR | 60.0% | |
| !! | CAGCGTCGACAGCAGATGCG+AGG | + | chr2_2:13621495-13621514 | None:intergenic | 65.0% |
| AGCACCACCTGCCACATCCC+TGG | + | chr2_2:13625710-13625729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 13621192 | 13625798 | 13621192 | ID=Msa0239340;Name=Msa0239340 |
| chr2_2 | mRNA | 13621192 | 13625798 | 13621192 | ID=Msa0239340-mRNA-1;Parent=Msa0239340;Name=Msa0239340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=160|1|1|1|1|1|11|27|240 |
| chr2_2 | exon | 13621192 | 13621279 | 13621192 | ID=Msa0239340-mRNA-1:exon:5667;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13622199 | 13622299 | 13622199 | ID=Msa0239340-mRNA-1:exon:5666;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13622386 | 13622454 | 13622386 | ID=Msa0239340-mRNA-1:exon:5665;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13624029 | 13624072 | 13624029 | ID=Msa0239340-mRNA-1:exon:5664;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13624157 | 13624211 | 13624157 | ID=Msa0239340-mRNA-1:exon:5663;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13624472 | 13624556 | 13624472 | ID=Msa0239340-mRNA-1:exon:5662;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13624644 | 13624747 | 13624644 | ID=Msa0239340-mRNA-1:exon:5661;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13624863 | 13624943 | 13624863 | ID=Msa0239340-mRNA-1:exon:5660;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13625313 | 13625363 | 13625313 | ID=Msa0239340-mRNA-1:exon:5659;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13625459 | 13625514 | 13625459 | ID=Msa0239340-mRNA-1:exon:5658;Parent=Msa0239340-mRNA-1 |
| chr2_2 | exon | 13625623 | 13625798 | 13625623 | ID=Msa0239340-mRNA-1:exon:5657;Parent=Msa0239340-mRNA-1 |
| chr2_2 | five_prime_UTR | 13625639 | 13625798 | 13625639 | ID=Msa0239340-mRNA-1:five_prime_utr;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13625623 | 13625638 | 13625623 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13625459 | 13625514 | 13625459 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13625313 | 13625363 | 13625313 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13624863 | 13624943 | 13624863 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13624644 | 13624747 | 13624644 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13624472 | 13624556 | 13624472 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13624157 | 13624211 | 13624157 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13624029 | 13624072 | 13624029 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13622386 | 13622454 | 13622386 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13622199 | 13622299 | 13622199 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | CDS | 13621219 | 13621279 | 13621219 | ID=Msa0239340-mRNA-1:cds;Parent=Msa0239340-mRNA-1 |
| chr2_2 | three_prime_UTR | 13621192 | 13621218 | 13621192 | ID=Msa0239340-mRNA-1:three_prime_utr;Parent=Msa0239340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
