Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379570 | XP_003594243.1 | 98.893 | 271 | 3 | 0 | 1 | 271 | 1 | 271 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379570 | sp|Q9M8S8|VTC4_ARATH | 79.259 | 270 | 55 | 1 | 1 | 270 | 1 | 269 | 8.21e-156 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379570 | G7IP84 | 98.893 | 271 | 3 | 0 | 1 | 271 | 1 | 271 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1379570 | 0.820707 | 5.948159e-53 | -8.615850e-47 |
| Msa0004360 | Msa1379570 | 0.829682 | 4.490967e-55 | -8.615850e-47 |
| Msa0008830 | Msa1379570 | 0.813401 | 2.607452e-51 | -8.615850e-47 |
| Msa0016670 | Msa1379570 | 0.822286 | 2.569832e-53 | -8.615850e-47 |
| Msa0017940 | Msa1379570 | 0.803396 | 3.556115e-49 | -8.615850e-47 |
| Msa0021810 | Msa1379570 | 0.801323 | 9.505298e-49 | -8.615850e-47 |
| Msa0024680 | Msa1379570 | 0.818860 | 1.572597e-52 | -8.615850e-47 |
| Msa0027540 | Msa1379570 | 0.815996 | 6.943216e-52 | -8.615850e-47 |
| Msa0032120 | Msa1379570 | 0.809435 | 1.894648e-50 | -8.615850e-47 |
| Msa0041620 | Msa1379570 | 0.809181 | 2.147764e-50 | -8.615850e-47 |
| Msa0044020 | Msa1379570 | 0.815923 | 7.207642e-52 | -8.615850e-47 |
| Msa0044220 | Msa1379570 | 0.802715 | 4.918942e-49 | -8.615850e-47 |
| Msa0046750 | Msa1379570 | 0.801100 | 1.055750e-48 | -8.615850e-47 |
| Msa0048030 | Msa1379570 | 0.803789 | 2.948083e-49 | -8.615850e-47 |
| Msa0050580 | Msa1379570 | 0.815506 | 8.928310e-52 | -8.615850e-47 |
| Msa0053110 | Msa1379570 | 0.821506 | 3.894911e-53 | -8.615850e-47 |
| Msa0072810 | Msa1379570 | 0.828839 | 7.193157e-55 | -8.615850e-47 |
| Msa0075310 | Msa1379570 | 0.810098 | 1.364798e-50 | -8.615850e-47 |
| Msa0090590 | Msa1379570 | 0.810483 | 1.127238e-50 | -8.615850e-47 |
| Msa0096670 | Msa1379570 | 0.839905 | 1.197559e-57 | -8.615850e-47 |
| Msa0103000 | Msa1379570 | 0.818257 | 2.154668e-52 | -8.615850e-47 |
| Msa0105420 | Msa1379570 | 0.808759 | 2.644729e-50 | -8.615850e-47 |
| Msa0109950 | Msa1379570 | 0.812105 | 5.013066e-51 | -8.615850e-47 |
| Msa0120330 | Msa1379570 | 0.819418 | 1.173916e-52 | -8.615850e-47 |
| Msa1365200 | Msa1379570 | 0.810460 | 1.140139e-50 | -8.615850e-47 |
| Msa1379570 | Msa1379990 | 0.831072 | 2.053811e-55 | -8.615850e-47 |
| Msa1379570 | Msa1382310 | 0.842888 | 1.964000e-58 | -8.615850e-47 |
| Msa1379570 | Msa1389950 | 0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa1379570 | Msa1390310 | 0.840973 | 6.295061e-58 | -8.615850e-47 |
| Msa1379570 | Msa1397810 | 0.807386 | 5.184064e-50 | -8.615850e-47 |
| Msa1379570 | Msa1398480 | 0.822313 | 2.532143e-53 | -8.615850e-47 |
| Msa1379570 | Msa1406040 | 0.805849 | 1.094233e-49 | -8.615850e-47 |
| Msa1379570 | Msa1442850 | 0.802655 | 5.061671e-49 | -8.615850e-47 |
| Msa1379570 | Msa1449880 | 0.810891 | 9.198050e-51 | -8.615850e-47 |
| Msa1379570 | Msa1450030 | 0.800371 | 1.487185e-48 | -8.615850e-47 |
| Msa0607200 | Msa1379570 | 0.803420 | 3.516184e-49 | -8.615850e-47 |
| Msa0609450 | Msa1379570 | 0.804302 | 2.305695e-49 | -8.615850e-47 |
| Msa0619070 | Msa1379570 | 0.813732 | 2.205564e-51 | -8.615850e-47 |
| Msa0620990 | Msa1379570 | 0.813505 | 2.474542e-51 | -8.615850e-47 |
| Msa0623700 | Msa1379570 | 0.806453 | 8.166318e-50 | -8.615850e-47 |
| Msa0642650 | Msa1379570 | 0.837770 | 4.273217e-57 | -8.615850e-47 |
| Msa0650090 | Msa1379570 | 0.808341 | 3.247466e-50 | -8.615850e-47 |
| Msa0654540 | Msa1379570 | 0.823668 | 1.223379e-53 | -8.615850e-47 |
| Msa0669850 | Msa1379570 | 0.803525 | 3.344247e-49 | -8.615850e-47 |
| Msa0677290 | Msa1379570 | 0.813036 | 3.136127e-51 | -8.615850e-47 |
| Msa0678860 | Msa1379570 | 0.806611 | 7.561429e-50 | -8.615850e-47 |
| Msa0680240 | Msa1379570 | 0.801963 | 7.026089e-49 | -8.615850e-47 |
| Msa0687630 | Msa1379570 | 0.800552 | 1.365886e-48 | -8.615850e-47 |
| Msa0692080 | Msa1379570 | 0.831598 | 1.524194e-55 | -8.615850e-47 |
| Msa0696620 | Msa1379570 | 0.803476 | 3.423989e-49 | -8.615850e-47 |
| Msa0706370 | Msa1379570 | 0.807935 | 3.964782e-50 | -8.615850e-47 |
| Msa0709760 | Msa1379570 | 0.802055 | 6.726911e-49 | -8.615850e-47 |
| Msa0716790 | Msa1379570 | 0.803434 | 3.491992e-49 | -8.615850e-47 |
| Msa0741900 | Msa1379570 | 0.802609 | 5.173151e-49 | -8.615850e-47 |
| Msa0746610 | Msa1379570 | 0.802011 | 6.869366e-49 | -8.615850e-47 |
| Msa0747780 | Msa1379570 | 0.811145 | 8.105158e-51 | -8.615850e-47 |
| Msa0759030 | Msa1379570 | 0.813443 | 2.553180e-51 | -8.615850e-47 |
| Msa0778320 | Msa1379570 | 0.811478 | 6.862418e-51 | -8.615850e-47 |
| Msa0822990 | Msa1379570 | 0.831302 | 1.802670e-55 | -8.615850e-47 |
| Msa0124340 | Msa1379570 | 0.817294 | 3.553223e-52 | -8.615850e-47 |
| Msa0124990 | Msa1379570 | 0.810418 | 1.164328e-50 | -8.615850e-47 |
| Msa0139900 | Msa1379570 | 0.807684 | 4.481233e-50 | -8.615850e-47 |
| Msa0141830 | Msa1379570 | 0.825670 | 4.130746e-54 | -8.615850e-47 |
| Msa0143430 | Msa1379570 | 0.808678 | 2.751817e-50 | -8.615850e-47 |
| Msa0168100 | Msa1379570 | 0.807550 | 4.785587e-50 | -8.615850e-47 |
| Msa0172350 | Msa1379570 | 0.837676 | 4.516046e-57 | -8.615850e-47 |
| Msa0172960 | Msa1379570 | -0.805097 | 1.573849e-49 | -8.615850e-47 |
| Msa0183830 | Msa1379570 | 0.821120 | 4.779792e-53 | -8.615850e-47 |
| Msa0185700 | Msa1379570 | 0.801858 | 7.382243e-49 | -8.615850e-47 |
| Msa0186890 | Msa1379570 | 0.804241 | 2.374583e-49 | -8.615850e-47 |
| Msa0187690 | Msa1379570 | 0.801810 | 7.553106e-49 | -8.615850e-47 |
| Msa0197300 | Msa1379570 | 0.869126 | 3.910288e-66 | -8.615850e-47 |
| Msa0200970 | Msa1379570 | 0.809724 | 1.642785e-50 | -8.615850e-47 |
| Msa0203160 | Msa1379570 | 0.803940 | 2.742073e-49 | -8.615850e-47 |
| Msa0222920 | Msa1379570 | 0.800561 | 1.360245e-48 | -8.615850e-47 |
| Msa0230550 | Msa1379570 | -0.801542 | 8.571400e-49 | -8.615850e-47 |
| Msa1226620 | Msa1379570 | 0.865882 | 4.277266e-65 | -8.615850e-47 |
| Msa1237030 | Msa1379570 | 0.838403 | 2.935886e-57 | -8.615850e-47 |
| Msa1249870 | Msa1379570 | 0.822837 | 1.913099e-53 | -8.615850e-47 |
| Msa1252190 | Msa1379570 | 0.808853 | 2.524594e-50 | -8.615850e-47 |
| Msa1281190 | Msa1379570 | 0.817749 | 2.805962e-52 | -8.615850e-47 |
| Msa1284520 | Msa1379570 | 0.823220 | 1.557659e-53 | -8.615850e-47 |
| Msa1292830 | Msa1379570 | 0.813195 | 2.894419e-51 | -8.615850e-47 |
| Msa1316830 | Msa1379570 | 0.801200 | 1.007537e-48 | -8.615850e-47 |
| Msa1324000 | Msa1379570 | 0.826377 | 2.805060e-54 | -8.615850e-47 |
| Msa0365850 | Msa1379570 | 0.811404 | 7.121392e-51 | -8.615850e-47 |
| Msa0369570 | Msa1379570 | 0.804938 | 1.698838e-49 | -8.615850e-47 |
| Msa0402330 | Msa1379570 | 0.836301 | 1.014048e-56 | -8.615850e-47 |
| Msa0413720 | Msa1379570 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
| Msa0419820 | Msa1379570 | 0.804997 | 1.651106e-49 | -8.615850e-47 |
| Msa0425940 | Msa1379570 | 0.840801 | 6.986577e-58 | -8.615850e-47 |
| Msa0426020 | Msa1379570 | 0.820777 | 5.734029e-53 | -8.615850e-47 |
| Msa0426160 | Msa1379570 | 0.840625 | 7.770775e-58 | -8.615850e-47 |
| Msa0431430 | Msa1379570 | 0.801496 | 8.762003e-49 | -8.615850e-47 |
| Msa0436460 | Msa1379570 | 0.836603 | 8.497070e-57 | -8.615850e-47 |
| Msa0461640 | Msa1379570 | 0.813084 | 3.061242e-51 | -8.615850e-47 |
| Msa0468610 | Msa1379570 | 0.801966 | 7.017720e-49 | -8.615850e-47 |
| Msa0472380 | Msa1379570 | 0.836403 | 9.552405e-57 | -8.615850e-47 |
| Msa0982690 | Msa1379570 | 0.803387 | 3.571982e-49 | -8.615850e-47 |
| Msa0996080 | Msa1379570 | 0.813631 | 2.321710e-51 | -8.615850e-47 |
| Msa1012700 | Msa1379570 | 0.813265 | 2.793158e-51 | -8.615850e-47 |
| Msa1012810 | Msa1379570 | 0.812714 | 3.690220e-51 | -8.615850e-47 |
| Msa1018790 | Msa1379570 | 0.854301 | 1.348452e-61 | -8.615850e-47 |
| Msa1040830 | Msa1379570 | 0.812123 | 4.966718e-51 | -8.615850e-47 |
| Msa1044340 | Msa1379570 | 0.842571 | 2.383620e-58 | -8.615850e-47 |
| Msa1046870 | Msa1379570 | 0.801200 | 1.007322e-48 | -8.615850e-47 |
| Msa1049510 | Msa1379570 | -0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa1054240 | Msa1379570 | 0.804470 | 2.127564e-49 | -8.615850e-47 |
| Msa1082700 | Msa1379570 | 0.831694 | 1.443852e-55 | -8.615850e-47 |
| Msa0239340 | Msa1379570 | 0.872787 | 2.430842e-67 | -8.615850e-47 |
| Msa0242680 | Msa1379570 | 0.826781 | 2.247446e-54 | -8.615850e-47 |
| Msa0246690 | Msa1379570 | 0.803714 | 3.055657e-49 | -8.615850e-47 |
| Msa0259560 | Msa1379570 | 0.812712 | 3.692330e-51 | -8.615850e-47 |
| Msa0264570 | Msa1379570 | 0.814773 | 1.298838e-51 | -8.615850e-47 |
| Msa0267760 | Msa1379570 | 0.841214 | 5.442567e-58 | -8.615850e-47 |
| Msa0277400 | Msa1379570 | 0.897639 | 1.156952e-76 | -8.615850e-47 |
| Msa0277630 | Msa1379570 | 0.816273 | 6.019538e-52 | -8.615850e-47 |
| Msa0280900 | Msa1379570 | 0.833961 | 3.947832e-56 | -8.615850e-47 |
| Msa0282850 | Msa1379570 | 0.801592 | 8.374289e-49 | -8.615850e-47 |
| Msa0297920 | Msa1379570 | 0.803281 | 3.756780e-49 | -8.615850e-47 |
| Msa0317310 | Msa1379570 | 0.812014 | 5.245620e-51 | -8.615850e-47 |
| Msa0320100 | Msa1379570 | 0.811474 | 6.874586e-51 | -8.615850e-47 |
| Msa0337850 | Msa1379570 | 0.802149 | 6.432847e-49 | -8.615850e-47 |
| Msa0355270 | Msa1379570 | 0.833797 | 4.338263e-56 | -8.615850e-47 |
| Msa1129560 | Msa1379570 | 0.813674 | 2.271574e-51 | -8.615850e-47 |
| Msa1129720 | Msa1379570 | 0.802305 | 5.974840e-49 | -8.615850e-47 |
| Msa1134110 | Msa1379570 | 0.822257 | 2.610010e-53 | -8.615850e-47 |
| Msa1139810 | Msa1379570 | 0.823814 | 1.131001e-53 | -8.615850e-47 |
| Msa1147270 | Msa1379570 | 0.813280 | 2.772058e-51 | -8.615850e-47 |
| Msa1174010 | Msa1379570 | 0.834947 | 2.232141e-56 | -8.615850e-47 |
| Msa1185540 | Msa1379570 | 0.807006 | 6.240714e-50 | -8.615850e-47 |
| Msa0505370 | Msa1379570 | 0.835463 | 1.653481e-56 | -8.615850e-47 |
| Msa0514490 | Msa1379570 | 0.804167 | 2.459920e-49 | -8.615850e-47 |
| Msa0520320 | Msa1379570 | 0.808410 | 3.139733e-50 | -8.615850e-47 |
| Msa0521880 | Msa1379570 | 0.831897 | 1.286098e-55 | -8.615850e-47 |
| Msa0525340 | Msa1379570 | 0.807153 | 5.808229e-50 | -8.615850e-47 |
| Msa0526700 | Msa1379570 | 0.832238 | 1.059577e-55 | -8.615850e-47 |
| Msa0526710 | Msa1379570 | 0.834015 | 3.826498e-56 | -8.615850e-47 |
| Msa0527590 | Msa1379570 | 0.818964 | 1.489166e-52 | -8.615850e-47 |
| Msa0527600 | Msa1379570 | 0.815350 | 9.671445e-52 | -8.615850e-47 |
| Msa0541860 | Msa1379570 | 0.807115 | 5.916191e-50 | -8.615850e-47 |
| Msa0546380 | Msa1379570 | 0.810552 | 1.089359e-50 | -8.615850e-47 |
| Msa0546840 | Msa1379570 | 0.821997 | 2.997771e-53 | -8.615850e-47 |
| Msa0553150 | Msa1379570 | 0.800268 | 1.560481e-48 | -8.615850e-47 |
| Msa0563530 | Msa1379570 | 0.804969 | 1.673282e-49 | -8.615850e-47 |
| Msa0574890 | Msa1379570 | 0.806917 | 6.515712e-50 | -8.615850e-47 |
| Msa0577390 | Msa1379570 | 0.826724 | 2.318577e-54 | -8.615850e-47 |
| Msa0581460 | Msa1379570 | 0.802775 | 4.779617e-49 | -8.615850e-47 |
| Msa0591770 | Msa1379570 | 0.809141 | 2.190551e-50 | -8.615850e-47 |
| Msa0846030 | Msa1379570 | 0.800312 | 1.529031e-48 | -8.615850e-47 |
| Msa0862100 | Msa1379570 | 0.813958 | 1.966717e-51 | -8.615850e-47 |
| Msa0863370 | Msa1379570 | 0.817326 | 3.494994e-52 | -8.615850e-47 |
| Msa0863690 | Msa1379570 | 0.801826 | 7.498082e-49 | -8.615850e-47 |
| Msa0864310 | Msa1379570 | 0.816231 | 6.151002e-52 | -8.615850e-47 |
| Msa0872310 | Msa1379570 | 0.809615 | 1.734002e-50 | -8.615850e-47 |
| Msa0878400 | Msa1379570 | 0.800325 | 1.519427e-48 | -8.615850e-47 |
| Msa0890250 | Msa1379570 | 0.826807 | 2.215176e-54 | -8.615850e-47 |
| Msa0903330 | Msa1379570 | 0.803725 | 3.038865e-49 | -8.615850e-47 |
| Msa0905550 | Msa1379570 | 0.816682 | 4.876619e-52 | -8.615850e-47 |
| Msa0925160 | Msa1379570 | 0.804562 | 2.035774e-49 | -8.615850e-47 |
| Msa0930780 | Msa1379570 | 0.814759 | 1.308052e-51 | -8.615850e-47 |
| Msa0931610 | Msa1379570 | 0.805110 | 1.563952e-49 | -8.615850e-47 |
| Msa0937550 | Msa1379570 | 0.824890 | 6.316245e-54 | -8.615850e-47 |
| Msa0974750 | Msa1379570 | 0.813970 | 1.954906e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379570 | MtrunA17_Chr2g0290121 | 98.529 | 272 | 3 | 1 | 1 | 271 | 1 | 272 | 0.0 | 544 |
| Msa1379570 | MtrunA17_Chr2g0306101 | 34.091 | 264 | 161 | 6 | 11 | 267 | 66 | 323 | 3.39e-39 | 139 |
| Msa1379570 | MtrunA17_Chr3g0145001 | 28.333 | 240 | 157 | 6 | 7 | 242 | 62 | 290 | 7.82e-21 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1379570 | AT3G02870.1 | 79.259 | 270 | 55 | 1 | 1 | 270 | 1 | 269 | 8.35e-157 | 437 |
| Msa1379570 | AT3G02870.3 | 78.148 | 270 | 55 | 1 | 1 | 270 | 1 | 266 | 2.29e-154 | 431 |
| Msa1379570 | AT3G02870.2 | 78.519 | 270 | 55 | 2 | 1 | 270 | 1 | 267 | 1.48e-153 | 429 |
| Msa1379570 | AT1G31190.1 | 33.955 | 268 | 155 | 8 | 12 | 267 | 87 | 344 | 1.39e-35 | 131 |
| Msa1379570 | AT4G39120.1 | 26.848 | 257 | 172 | 5 | 4 | 255 | 79 | 324 | 1.20e-20 | 90.1 |
| Msa1379570 | AT4G39120.2 | 26.848 | 257 | 172 | 5 | 4 | 255 | 108 | 353 | 1.74e-20 | 90.1 |
Find 85 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTATCCGATAAAATTAT+TGG | 0.175221 | tig0020280:+35402 | Msa1379570:three_prime_UTR |
| AATAAAAGACGGAAGCTTTC+GGG | 0.238935 | tig0020280:-35556 | None:intergenic |
| TACCACACCTCATTGATTAT+TGG | 0.252568 | tig0020280:-32009 | None:intergenic |
| TTGAATGGGAACCCTATAAA+AGG | 0.275907 | tig0020280:+32317 | Msa1379570:CDS |
| TTTATTATTAATCTATGATT+AGG | 0.298511 | tig0020280:+35300 | Msa1379570:three_prime_UTR |
| TATGTTCGACGTGCTTAGTT+TGG | 0.301815 | tig0020280:-31148 | None:intergenic |
| GAAGAAACCACAGCTGCTTT+TGG | 0.311320 | tig0020280:+31757 | Msa1379570:CDS |
| TAATAAAAGACGGAAGCTTT+CGG | 0.332087 | tig0020280:-35557 | None:intergenic |
| GTCTCCATTGGTCTTACAAT+TGG | 0.356667 | tig0020280:+31955 | Msa1379570:CDS |
| CTGGATGTGTTCTATGAAAC+TGG | 0.361010 | tig0020280:+33861 | Msa1379570:CDS |
| ATGTTCGACGTGCTTAGTTT+GGG | 0.361457 | tig0020280:-31147 | None:intergenic |
| AAGCAAACTATTAATCCTAT+TGG | 0.366970 | tig0020280:-33683 | None:intergenic |
| GGGAAAGGTGCTTTCTTGAA+TGG | 0.393210 | tig0020280:+32302 | Msa1379570:CDS |
| TTATGTTTCGCAGGTTGATT+TGG | 0.403023 | tig0020280:+31539 | Msa1379570:intron |
| AGTGTCATCACAAACTGAAT+TGG | 0.403212 | tig0020280:+32420 | Msa1379570:intron |
| TTGTGGTCTTATTAGTTCAT+TGG | 0.409883 | tig0020280:+31733 | Msa1379570:intron |
| CCCTTCGTTTGTGTCTCCAT+TGG | 0.411102 | tig0020280:+31943 | Msa1379570:CDS |
| TGCTTCAAACCCTCTCTTGA+AGG | 0.415374 | tig0020280:+35230 | Msa1379570:CDS |
| CACATGGATTGTTGATCCCT+TGG | 0.431815 | tig0020280:+31804 | Msa1379570:CDS |
| ACTAAGCACGTCGAACATAA+AGG | 0.438472 | tig0020280:+31152 | Msa1379570:CDS |
| GGAAAGGTGCTTTCTTGAAT+GGG | 0.450317 | tig0020280:+32303 | Msa1379570:CDS |
| GATTAATAGTTTGCTTTACA+AGG | 0.459303 | tig0020280:+33690 | Msa1379570:CDS |
| GTGTTCTATGAAACTGGATT+TGG | 0.463035 | tig0020280:+33867 | Msa1379570:CDS |
| TCTCTTTCCAGGGATGTGGC+AGG | 0.464025 | tig0020280:+34814 | Msa1379570:intron |
| ACAGCTTTATCCCACTCATA+AGG | 0.465552 | tig0020280:+31611 | Msa1379570:CDS |
| CACTAGATGCGACCACCAAT+AGG | 0.470798 | tig0020280:+33668 | Msa1379570:CDS |
| GCTGTCATTGTTAGAGAAGC+TGG | 0.476874 | tig0020280:+34841 | Msa1379570:CDS |
| TTCTATGAAACTGGATTTGG+TGG | 0.477412 | tig0020280:+33870 | Msa1379570:CDS |
| TCATATCAGGTTATTCGAAA+AGG | 0.480344 | tig0020280:+31119 | Msa1379570:intron |
| TGGAATTGCATGTGGAAGAC+TGG | 0.486197 | tig0020280:+33842 | Msa1379570:CDS |
| TCCTGTGCTCTGAATCTTTG+TGG | 0.486333 | tig0020280:+33822 | Msa1379570:CDS |
| GGTCTCTCTTTCCAGGGATG+TGG | 0.490417 | tig0020280:+34810 | Msa1379570:intron |
| TGAACAGAAACGAGATGATA+CGG | 0.495443 | tig0020280:-30813 | None:intergenic |
| TGTTGAGTGTGGTGAGTGGC+CGG | 0.503182 | tig0020280:+30730 | Msa1379570:five_prime_UTR |
| CAATTGCATCCTTCAAGAGA+GGG | 0.521161 | tig0020280:-35239 | None:intergenic |
| TCGCCTACTAACGCACTAAC+CGG | 0.533062 | tig0020280:-30749 | None:intergenic |
| GGAACTACTAACTTTGTCCA+TGG | 0.534388 | tig0020280:+31829 | Msa1379570:CDS |
| AAGTGACTTATATCATTGAA+TGG | 0.535490 | tig0020280:-35457 | None:intergenic |
| TTCACTGCAGTCCATGGGAA+AGG | 0.541447 | tig0020280:+32287 | Msa1379570:CDS |
| TAGTAGGCGAAAGGTAGGAC+AGG | 0.549833 | tig0020280:+30762 | Msa1379570:five_prime_UTR |
| TCAAGAAAGCACCTTTCCCA+TGG | 0.553403 | tig0020280:-32298 | None:intergenic |
| CAAACTATTAATCCTATTGG+TGG | 0.553541 | tig0020280:-33680 | None:intergenic |
| AGTACATAAAAGACACATGC+GGG | 0.560887 | tig0020280:+30703 | Msa1379570:five_prime_UTR |
| TTTGTTTGCTTCAGGTCTGG+TGG | 0.561709 | tig0020280:+35177 | Msa1379570:intron |
| AGGCGAAAGGTAGGACAGGA+AGG | 0.565104 | tig0020280:+30766 | Msa1379570:five_prime_UTR |
| TGGATTGTTGATCCCTTGGA+TGG | 0.566106 | tig0020280:+31808 | Msa1379570:CDS |
| GTCGACGCTGCTCATAAAGC+TGG | 0.566423 | tig0020280:+31014 | Msa1379570:CDS |
| TCCACAAAGATTCAGAGCAC+AGG | 0.570894 | tig0020280:-33823 | None:intergenic |
| GGCTGGAACAAAACGTGACA+AGG | 0.572747 | tig0020280:+33642 | Msa1379570:intron |
| CTTTCCAGGGATGTGGCAGG+TGG | 0.578921 | tig0020280:+34817 | Msa1379570:intron |
| TGTAGTTCCAAAAGCAGCTG+TGG | 0.579976 | tig0020280:-31764 | None:intergenic |
| GAACAGAAACGAGATGATAC+GGG | 0.581281 | tig0020280:-30812 | None:intergenic |
| TGGCCGGTTAGTGCGTTAGT+AGG | 0.587865 | tig0020280:+30746 | Msa1379570:five_prime_UTR |
| TGCGTTAGTAGGCGAAAGGT+AGG | 0.588989 | tig0020280:+30757 | Msa1379570:five_prime_UTR |
| AAAGTTAGTAGTTCCATCCA+AGG | 0.591041 | tig0020280:-31821 | None:intergenic |
| CCAATGGAGACACAAACGAA+GGG | 0.595236 | tig0020280:-31943 | None:intergenic |
| ACAATTGCATCCTTCAAGAG+AGG | 0.597192 | tig0020280:-35240 | None:intergenic |
| TTGTACACAACACCGACTGT+TGG | 0.598803 | tig0020280:-31985 | None:intergenic |
| CTATCAGAACAGAACAAACA+TGG | 0.603365 | tig0020280:+30842 | Msa1379570:exon |
| GAACTACTAACTTTGTCCAT+GGG | 0.605830 | tig0020280:+31830 | Msa1379570:CDS |
| GAACTCTCTTCTTGCAACTG+AGG | 0.612995 | tig0020280:+32444 | Msa1379570:CDS |
| TCGGAATGAACCTTATGAGT+GGG | 0.614146 | tig0020280:-31621 | None:intergenic |
| ATCGGAATGAACCTTATGAG+TGG | 0.614350 | tig0020280:-31622 | None:intergenic |
| AATCACACCATAATAAAAGA+CGG | 0.614759 | tig0020280:-35567 | None:intergenic |
| TTTAATCAAGTTCATTCACA+TGG | 0.618186 | tig0020280:+35518 | Msa1379570:three_prime_UTR |
| AATCTTTGTGGAATTGCATG+TGG | 0.620245 | tig0020280:+33834 | Msa1379570:CDS |
| AAACTGGATTTGGTGGTCCA+TGG | 0.624338 | tig0020280:+33877 | Msa1379570:CDS |
| CAGCGTCGACAGCAGATGCG+AGG | 0.636535 | tig0020280:-31001 | None:intergenic |
| GTGAGATCTATTAGAATGAG+CGG | 0.638610 | tig0020280:+33798 | Msa1379570:CDS |
| GAAACGAGATGATACGGGAA+AGG | 0.639370 | tig0020280:-30807 | None:intergenic |
| CAATGGAGACACAAACGAAG+GGG | 0.643264 | tig0020280:-31942 | None:intergenic |
| ACAAACATGGCTGACAACAA+TGG | 0.645798 | tig0020280:+30855 | Msa1379570:exon |
| GCACGTCGAACATAAAGGAT+CGG | 0.652028 | tig0020280:+31157 | Msa1379570:CDS |
| ATTGGAAAAGTTCCAACAGT+CGG | 0.655715 | tig0020280:+31973 | Msa1379570:CDS |
| AAGTTAGTAGTTCCATCCAA+GGG | 0.657511 | tig0020280:-31820 | None:intergenic |
| TTAGTGCGTTAGTAGGCGAA+AGG | 0.660502 | tig0020280:+30753 | Msa1379570:five_prime_UTR |
| CAAGGGATCAACAATCCATG+TGG | 0.665230 | tig0020280:-31803 | None:intergenic |
| AACTTACAGATGATCCCACA+TGG | 0.672174 | tig0020280:+31788 | Msa1379570:CDS |
| AAGGGATCAACAATCCATGT+GGG | 0.674293 | tig0020280:-31802 | None:intergenic |
| ACCAATGGAGACACAAACGA+AGG | 0.679016 | tig0020280:-31944 | None:intergenic |
| GTACAATCCAATAATCAATG+AGG | 0.684726 | tig0020280:+32002 | Msa1379570:CDS |
| CTTAGTGCATCAGCATTACG+TGG | 0.685460 | tig0020280:+35477 | Msa1379570:three_prime_UTR |
| TAGTACATAAAAGACACATG+CGG | 0.724510 | tig0020280:+30702 | Msa1379570:five_prime_UTR |
| GTCATTGTTAGAGAAGCTGG+AGG | 0.743505 | tig0020280:+34844 | Msa1379570:CDS |
| GTACATAAAAGACACATGCG+GGG | 0.762189 | tig0020280:+30704 | Msa1379570:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATAAATTTTACAGAAT+TGG | - | tig0020280:32942-32961 | None:intergenic | 10.0% |
| !! | TTAAAAATATACAGATAATT+TGG | - | tig0020280:32990-33009 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | + | tig0020280:34127-34146 | Msa1379570:intron | 10.0% |
| !! | TTTATTATTAATCTATGATT+AGG | + | tig0020280:35300-35319 | Msa1379570:three_prime_UTR | 10.0% |
| !!! | AGAAAAATTTAATGATTTTG+TGG | - | tig0020280:32069-32088 | None:intergenic | 15.0% |
| !! | TTTAGGAATATTATTCAATA+AGG | + | tig0020280:32171-32190 | Msa1379570:intron | 15.0% |
| !! | TATTATTCAATAAGGATTAT+CGG | + | tig0020280:32179-32198 | Msa1379570:intron | 15.0% |
| !! | AGAAATAAAAAACTTATCTA+GGG | - | tig0020280:33163-33182 | None:intergenic | 15.0% |
| !! | TAGAAATAAAAAACTTATCT+AGG | - | tig0020280:33164-33183 | None:intergenic | 15.0% |
| !! | AGTTAATTCAAAAAAATTCA+TGG | - | tig0020280:33731-33750 | None:intergenic | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | + | tig0020280:34126-34145 | Msa1379570:intron | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | + | tig0020280:34128-34147 | Msa1379570:intron | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | + | tig0020280:34239-34258 | Msa1379570:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | + | tig0020280:34240-34259 | Msa1379570:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | - | tig0020280:34271-34290 | None:intergenic | 15.0% |
| !! | ATAATAGCTTATGTTAAAAA+TGG | + | tig0020280:34587-34606 | Msa1379570:intron | 15.0% |
| !!! | TTTTCTTATGTTAAATTGTA+AGG | + | tig0020280:34700-34719 | Msa1379570:intron | 15.0% |
| !! | TACATTATGTATCTATAAAA+TGG | - | tig0020280:35013-35032 | None:intergenic | 15.0% |
| !!! | TAATCAAAACAATCAATTTT+TGG | + | tig0020280:35374-35393 | Msa1379570:three_prime_UTR | 15.0% |
| !! | AAATTATCCGATAAAATTAT+TGG | + | tig0020280:35402-35421 | Msa1379570:three_prime_UTR | 15.0% |
| !!! | AATTACTCCAATAATTTTAT+CGG | - | tig0020280:35412-35431 | None:intergenic | 15.0% |
| !! | ATTCTTTCTTATATCATATC+AGG | + | tig0020280:31106-31125 | Msa1379570:intron | 20.0% |
| !!! | TGATTTGAATTTGAGATTTT+AGG | - | tig0020280:31219-31238 | None:intergenic | 20.0% |
| !! | ACAATAATAAGTGAAATCAA+CGG | - | tig0020280:31271-31290 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTGATTATAAGC+TGG | - | tig0020280:31488-31507 | None:intergenic | 20.0% |
| !! | CAAAAACATTATATGATTAG+AGG | - | tig0020280:31651-31670 | None:intergenic | 20.0% |
| !!! | CATATAATGTTTTTGATTAG+TGG | + | tig0020280:31656-31675 | Msa1379570:intron | 20.0% |
| !! | TTAGTCCAATATGTAAATAT+GGG | - | tig0020280:31901-31920 | None:intergenic | 20.0% |
| !! | TTTAGTCCAATATGTAAATA+TGG | - | tig0020280:31902-31921 | None:intergenic | 20.0% |
| !!! | TAGTATGCAAATTGAAATTT+TGG | + | tig0020280:32245-32264 | Msa1379570:intron | 20.0% |
| !! | TTTATTATTGTTTATGTGGT+TGG | - | tig0020280:32638-32657 | None:intergenic | 20.0% |
| !!! | AAGCTTTATTATTGTTTATG+TGG | - | tig0020280:32642-32661 | None:intergenic | 20.0% |
| !! | TAAAACTTGGAATATTAAGT+GGG | - | tig0020280:33132-33151 | None:intergenic | 20.0% |
| !! | TTAAAACTTGGAATATTAAG+TGG | - | tig0020280:33133-33152 | None:intergenic | 20.0% |
| !! | GTAAAAAATACATGTATACT+TGG | - | tig0020280:33474-33493 | None:intergenic | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | + | tig0020280:33906-33925 | Msa1379570:intron | 20.0% |
| !! | TCTAATATATTCGAAATGTA+CGG | - | tig0020280:34011-34030 | None:intergenic | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | + | tig0020280:34100-34119 | Msa1379570:intron | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | + | tig0020280:34101-34120 | Msa1379570:intron | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | - | tig0020280:34272-34291 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | + | tig0020280:34273-34292 | Msa1379570:intron | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | + | tig0020280:33906-33925 | Msa1379570:intron | 20.0% |
| !!! | GTTTTATGTATGAATCTTAT+AGG | + | tig0020280:34657-34676 | Msa1379570:intron | 20.0% |
| !! | TATTTAAGCAAAGTTACTTA+CGG | - | tig0020280:34883-34902 | None:intergenic | 20.0% |
| !! | ATAGATACATAATGTAATCA+TGG | + | tig0020280:35017-35036 | Msa1379570:intron | 20.0% |
| !!! | ACATTACATTTTTTCACTAT+TGG | + | tig0020280:35064-35083 | Msa1379570:intron | 20.0% |
| !!! | AAATTGATAGTGATAGATGA+AGG | - | tig0020280:31077-31096 | None:intergenic | 25.0% |
| ! | GAGAAAAAATAGAAGAGAAT+GGG | - | tig0020280:31190-31209 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATAGAAGAGAA+TGG | - | tig0020280:31191-31210 | None:intergenic | 25.0% |
| !!! | TTGAATTTGAGATTTTAGGA+TGG | - | tig0020280:31215-31234 | None:intergenic | 25.0% |
| ! | AGAAATAAGTAAGTAGTTTG+AGG | + | tig0020280:31369-31388 | Msa1379570:intron | 25.0% |
| !! | TTACTTGTTAGTAATGTGAT+TGG | + | tig0020280:31429-31448 | Msa1379570:intron | 25.0% |
| ! | TTATATGATTAGAGGAAGAT+CGG | - | tig0020280:31643-31662 | None:intergenic | 25.0% |
| !!! | TTTTTGATTAGTGGCTATTA+TGG | + | tig0020280:31665-31684 | Msa1379570:intron | 25.0% |
| !! | ATTTCTGATCTTTTCTTTGA+TGG | + | tig0020280:31861-31880 | Msa1379570:intron | 25.0% |
| !! | TTTCTGATCTTTTCTTTGAT+GGG | + | tig0020280:31862-31881 | Msa1379570:intron | 25.0% |
| !! | ATATGTAAATATGGGAGTAT+CGG | - | tig0020280:31893-31912 | None:intergenic | 25.0% |
| ! | ATACTCCCATATTTACATAT+TGG | + | tig0020280:31893-31912 | Msa1379570:intron | 25.0% |
| ! | CTAAAAATTATACTATCTGC+AGG | + | tig0020280:31917-31936 | Msa1379570:intron | 25.0% |
| ! | CTTAAAATGATTCTTCAAGA+AGG | - | tig0020280:32039-32058 | None:intergenic | 25.0% |
| ! | AAATTTCCAAAAAGAAGCTT+TGG | - | tig0020280:32134-32153 | None:intergenic | 25.0% |
| ! | GACATTGAAGTGATTAATTT+AGG | + | tig0020280:32154-32173 | Msa1379570:intron | 25.0% |
| ! | ATAACAGTATAAGGCAAATT+AGG | - | tig0020280:32691-32710 | None:intergenic | 25.0% |
| ! | AAGTCATGTATAACAGTATA+AGG | - | tig0020280:32700-32719 | None:intergenic | 25.0% |
| ! | CAATTGTATAGGAAATATCA+AGG | - | tig0020280:32885-32904 | None:intergenic | 25.0% |
| ! | CTTGATATTTCCTATACAAT+TGG | + | tig0020280:32883-32902 | Msa1379570:intron | 25.0% |
| ! | TACTTCTTTACCAATTGTAT+AGG | - | tig0020280:32896-32915 | None:intergenic | 25.0% |
| !!! | AAATGATTTTAAAGCGTCTT+AGG | + | tig0020280:33063-33082 | Msa1379570:intron | 25.0% |
| !!! | AATGATTTTAAAGCGTCTTA+GGG | + | tig0020280:33064-33083 | Msa1379570:intron | 25.0% |
| ! | AAAATACATGTATACTTGGT+GGG | - | tig0020280:33470-33489 | None:intergenic | 25.0% |
| ! | AAAAATACATGTATACTTGG+TGG | - | tig0020280:33471-33490 | None:intergenic | 25.0% |
| ! | TGGAAATCTTACTAATTGTA+AGG | - | tig0020280:33496-33515 | None:intergenic | 25.0% |
| ! | AATTAGAATTCCAAGCATTA+TGG | - | tig0020280:33516-33535 | None:intergenic | 25.0% |
| ! | ATAATGCTTGGAATTCTAAT+TGG | + | tig0020280:33515-33534 | Msa1379570:intron | 25.0% |
| !!! | AATATCAAGATTATTGGTTC+AGG | + | tig0020280:33543-33562 | Msa1379570:intron | 25.0% |
| ! | AAGCAAACTATTAATCCTAT+TGG | - | tig0020280:33686-33705 | None:intergenic | 25.0% |
| !!! | GATTAATAGTTTGCTTTACA+AGG | + | tig0020280:33690-33709 | Msa1379570:CDS | 25.0% |
| ! | CTAATATATTCGAAATGTAC+GGG | - | tig0020280:34010-34029 | None:intergenic | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | + | tig0020280:34056-34075 | Msa1379570:intron | 25.0% |
| !!! | AAAACCTTTAAAACGAATCA+GGG | - | tig0020280:34642-34661 | None:intergenic | 25.0% |
| !!! | TAAAACCTTTAAAACGAATC+AGG | - | tig0020280:34643-34662 | None:intergenic | 25.0% |
| ! | ATACATAATGTAATCATGGT+TGG | + | tig0020280:35021-35040 | Msa1379570:intron | 25.0% |
| !!! | TACATTTTTTCACTATTGGT+AGG | + | tig0020280:35068-35087 | Msa1379570:intron | 25.0% |
| !! | ATTTCAATTTTCACTCAGTT+TGG | - | tig0020280:35278-35297 | None:intergenic | 25.0% |
| ! | AAGTGACTTATATCATTGAA+TGG | - | tig0020280:35460-35479 | None:intergenic | 25.0% |
| ! | TTTAATCAAGTTCATTCACA+TGG | + | tig0020280:35518-35537 | Msa1379570:three_prime_UTR | 25.0% |
| TAGTACATAAAAGACACATG+CGG | + | tig0020280:30702-30721 | Msa1379570:five_prime_UTR | 30.0% | |
| TCATATCAGGTTATTCGAAA+AGG | + | tig0020280:31119-31138 | Msa1379570:intron | 30.0% | |
| ATAATAAGTGAAATCAACGG+CGG | - | tig0020280:31268-31287 | None:intergenic | 30.0% | |
| ! | ATATCTTTGTTATGTTTCGC+AGG | + | tig0020280:31530-31549 | Msa1379570:intron | 30.0% |
| CTGAAGTTCATTTGTATTTG+TGG | + | tig0020280:31716-31735 | Msa1379570:intron | 30.0% | |
| !! | TTGTGGTCTTATTAGTTCAT+TGG | + | tig0020280:31733-31752 | Msa1379570:intron | 30.0% |
| TCAGAAATAATGTTTACCCA+TGG | - | tig0020280:31849-31868 | None:intergenic | 30.0% | |
| ! | TTCTGATCTTTTCTTTGATG+GGG | + | tig0020280:31863-31882 | Msa1379570:intron | 30.0% |
| ! | TTTTCCAATTGTAAGACCAA+TGG | - | tig0020280:31962-31981 | None:intergenic | 30.0% |
| GTACAATCCAATAATCAATG+AGG | + | tig0020280:32002-32021 | Msa1379570:CDS | 30.0% | |
| ATTTGCATACTAAGCAATGA+AGG | - | tig0020280:32237-32256 | None:intergenic | 30.0% | |
| ATTGATACAGGTACATGATA+AGG | - | tig0020280:32557-32576 | None:intergenic | 30.0% | |
| AATGACCAACAAAATCAGAA+TGG | + | tig0020280:32583-32602 | Msa1379570:intron | 30.0% | |
| ! | AAGAACCATTCTGATTTTGT+TGG | - | tig0020280:32591-32610 | None:intergenic | 30.0% |
| TTATACCCTCAAAGTTTATG+TGG | + | tig0020280:32957-32976 | Msa1379570:intron | 30.0% | |
| TAGGGAATAAGCTTAAAACT+TGG | - | tig0020280:33145-33164 | None:intergenic | 30.0% | |
| GCTTATCAAACACTTATCTA+GGG | - | tig0020280:33199-33218 | None:intergenic | 30.0% | |
| AGCTTATCAAACACTTATCT+AGG | - | tig0020280:33200-33219 | None:intergenic | 30.0% | |
| AATCACTAATCCCACTTAAA+AGG | + | tig0020280:33431-33450 | Msa1379570:intron | 30.0% | |
| ! | AAATACATGTATACTTGGTG+GGG | - | tig0020280:33469-33488 | None:intergenic | 30.0% |
| AGTAAGATTTCCATAATGCT+TGG | + | tig0020280:33503-33522 | Msa1379570:intron | 30.0% | |
| GCATGGAATATCAAGATTAT+TGG | + | tig0020280:33537-33556 | Msa1379570:intron | 30.0% | |
| !! | CAAACAGTCATTGATTCAAA+AGG | - | tig0020280:33588-33607 | None:intergenic | 30.0% |
| CAAACTATTAATCCTATTGG+TGG | - | tig0020280:33683-33702 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | - | tig0020280:33914-33933 | None:intergenic | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | - | tig0020280:34227-34246 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | - | tig0020280:34228-34247 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | - | tig0020280:33914-33933 | None:intergenic | 30.0% | |
| TATTAGAGAAAAAGTTCCCT+CGG | - | tig0020280:34546-34565 | None:intergenic | 30.0% | |
| !! | AAACCTTTAAAACGAATCAG+GGG | - | tig0020280:34641-34660 | None:intergenic | 30.0% |
| ATCCTCTATTCTTAACTTAG+TGG | + | tig0020280:34909-34928 | Msa1379570:intron | 30.0% | |
| TTCCACTAAGTTAAGAATAG+AGG | - | tig0020280:34914-34933 | None:intergenic | 30.0% | |
| !!! | TAGACTGTTTTTGCATAGTT+AGG | + | tig0020280:34955-34974 | Msa1379570:intron | 30.0% |
| TAATAAAAGACGGAAGCTTT+CGG | - | tig0020280:35560-35579 | None:intergenic | 30.0% | |
| ! | AAAGCTTCCGTCTTTTATTA+TGG | + | tig0020280:35560-35579 | Msa1379570:three_prime_UTR | 30.0% |
| AGTACATAAAAGACACATGC+GGG | + | tig0020280:30703-30722 | Msa1379570:five_prime_UTR | 35.0% | |
| TGAACAGAAACGAGATGATA+CGG | - | tig0020280:30816-30835 | None:intergenic | 35.0% | |
| CTATCAGAACAGAACAAACA+TGG | + | tig0020280:30842-30861 | Msa1379570:exon | 35.0% | |
| !! | CGTTTCAGTTTGTTGTAGTA+TGG | + | tig0020280:30903-30922 | Msa1379570:intron | 35.0% |
| ! | TGATAGTGATAGATGAAGGA+AGG | - | tig0020280:31073-31092 | None:intergenic | 35.0% |
| !! | TTATGTTTCGCAGGTTGATT+TGG | + | tig0020280:31539-31558 | Msa1379570:intron | 35.0% |
| TATGGCTACTTATCAGTTAC+CGG | + | tig0020280:31683-31702 | Msa1379570:intron | 35.0% | |
| GAACTTCAGCAAATATACAC+CGG | - | tig0020280:31705-31724 | None:intergenic | 35.0% | |
| AAGTTAGTAGTTCCATCCAA+GGG | - | tig0020280:31823-31842 | None:intergenic | 35.0% | |
| AAAGTTAGTAGTTCCATCCA+AGG | - | tig0020280:31824-31843 | None:intergenic | 35.0% | |
| GAACTACTAACTTTGTCCAT+GGG | + | tig0020280:31830-31849 | Msa1379570:CDS | 35.0% | |
| ATTGGAAAAGTTCCAACAGT+CGG | + | tig0020280:31973-31992 | Msa1379570:CDS | 35.0% | |
| ATCCAATAATCAATGAGGTG+TGG | + | tig0020280:32007-32026 | Msa1379570:intron | 35.0% | |
| ! | TACCACACCTCATTGATTAT+TGG | - | tig0020280:32012-32031 | None:intergenic | 35.0% |
| !! | AAAAAGAAGCTTTGGAGCAA+TGG | - | tig0020280:32126-32145 | None:intergenic | 35.0% |
| ! | ATTGCTCCAAAGCTTCTTTT+TGG | + | tig0020280:32125-32144 | Msa1379570:intron | 35.0% |
| TTCAATAAGGATTATCGGCA+TGG | + | tig0020280:32184-32203 | Msa1379570:intron | 35.0% | |
| TTGAATGGGAACCCTATAAA+AGG | + | tig0020280:32317-32336 | Msa1379570:CDS | 35.0% | |
| GATCGAAAGATGAAAAACAG+AGG | - | tig0020280:32348-32367 | None:intergenic | 35.0% | |
| TGTGATGACACTGAAATTCA+AGG | - | tig0020280:32412-32431 | None:intergenic | 35.0% | |
| AGTGTCATCACAAACTGAAT+TGG | + | tig0020280:32420-32439 | Msa1379570:intron | 35.0% | |
| TTAGGTGTTAGTCCAAATAC+AGG | - | tig0020280:32673-32692 | None:intergenic | 35.0% | |
| CAGATTATGACAGTGTCATA+GGG | - | tig0020280:32743-32762 | None:intergenic | 35.0% | |
| TCAGATTATGACAGTGTCAT+AGG | - | tig0020280:32744-32763 | None:intergenic | 35.0% | |
| TGTTAGAATTTCTACACTCG+TGG | + | tig0020280:32782-32801 | Msa1379570:intron | 35.0% | |
| ATCAGCCACATAAACTTTGA+GGG | - | tig0020280:32965-32984 | None:intergenic | 35.0% | |
| TATCAGCCACATAAACTTTG+AGG | - | tig0020280:32966-32985 | None:intergenic | 35.0% | |
| !! | TGATCACGTTGTAACTTGTT+GGG | - | tig0020280:33384-33403 | None:intergenic | 35.0% |
| !! | TGGGGATAAACCTTTTAAGT+GGG | - | tig0020280:33444-33463 | None:intergenic | 35.0% |
| ! | ATGGGGATAAACCTTTTAAG+TGG | - | tig0020280:33445-33464 | None:intergenic | 35.0% |
| AATAGATCTCACCTGACATA+TGG | - | tig0020280:33790-33809 | None:intergenic | 35.0% | |
| GTGAGATCTATTAGAATGAG+CGG | + | tig0020280:33798-33817 | Msa1379570:CDS | 35.0% | |
| AATCTTTGTGGAATTGCATG+TGG | + | tig0020280:33834-33853 | Msa1379570:CDS | 35.0% | |
| GTGTTCTATGAAACTGGATT+TGG | + | tig0020280:33867-33886 | Msa1379570:CDS | 35.0% | |
| TTCTATGAAACTGGATTTGG+TGG | + | tig0020280:33870-33889 | Msa1379570:CDS | 35.0% | |
| ATATATTCGAAATGTACGGG+TGG | - | tig0020280:34007-34026 | None:intergenic | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | + | tig0020280:34104-34123 | Msa1379570:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+AGG | + | tig0020280:34136-34155 | Msa1379570:intron | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | + | tig0020280:34137-34156 | Msa1379570:intron | 35.0% | |
| ! | GAGCAATTTTCGAAATGTAC+GGG | - | tig0020280:34409-34428 | None:intergenic | 35.0% |
| ! | GGAGCAATTTTCGAAATGTA+CGG | - | tig0020280:34410-34429 | None:intergenic | 35.0% |
| !!! | CTTTTTCTGAAGTGTACATC+CGG | + | tig0020280:34507-34526 | Msa1379570:intron | 35.0% |
| !! | TGTACATCCGGAGTTATTTT+AGG | + | tig0020280:34519-34538 | Msa1379570:intron | 35.0% |
| !! | GTACATCCGGAGTTATTTTA+GGG | + | tig0020280:34520-34539 | Msa1379570:intron | 35.0% |
| AAAAATGGCCTTTGACCTAA+CGG | + | tig0020280:34602-34621 | Msa1379570:intron | 35.0% | |
| TAACATTTGCTTTAGCCTAG+TGG | + | tig0020280:34758-34777 | Msa1379570:intron | 35.0% | |
| ACGAAGCTTCATAGATATGT+TGG | + | tig0020280:35121-35140 | Msa1379570:intron | 35.0% | |
| CGAAGCTTCATAGATATGTT+GGG | + | tig0020280:35122-35141 | Msa1379570:intron | 35.0% | |
| !! | CTGATGTTTTTGTTTGCTTC+AGG | + | tig0020280:35169-35188 | Msa1379570:intron | 35.0% |
| AATAAAAGACGGAAGCTTTC+GGG | - | tig0020280:35559-35578 | None:intergenic | 35.0% | |
| GTACATAAAAGACACATGCG+GGG | + | tig0020280:30704-30723 | Msa1379570:five_prime_UTR | 40.0% | |
| GAACAGAAACGAGATGATAC+GGG | - | tig0020280:30815-30834 | None:intergenic | 40.0% | |
| ACAAACATGGCTGACAACAA+TGG | + | tig0020280:30855-30874 | Msa1379570:exon | 40.0% | |
| ATGTTCGACGTGCTTAGTTT+GGG | - | tig0020280:31150-31169 | None:intergenic | 40.0% | |
| TATGTTCGACGTGCTTAGTT+TGG | - | tig0020280:31151-31170 | None:intergenic | 40.0% | |
| ACTAAGCACGTCGAACATAA+AGG | + | tig0020280:31152-31171 | Msa1379570:CDS | 40.0% | |
| CTTGTTCTCTGTTCTTGCAA+AGG | + | tig0020280:31398-31417 | Msa1379570:intron | 40.0% | |
| ! | ACAGCTTTATCCCACTCATA+AGG | + | tig0020280:31611-31630 | Msa1379570:CDS | 40.0% |
| TCGGAATGAACCTTATGAGT+GGG | - | tig0020280:31624-31643 | None:intergenic | 40.0% | |
| ATCGGAATGAACCTTATGAG+TGG | - | tig0020280:31625-31644 | None:intergenic | 40.0% | |
| AACTTACAGATGATCCCACA+TGG | + | tig0020280:31788-31807 | Msa1379570:CDS | 40.0% | |
| AAGGGATCAACAATCCATGT+GGG | - | tig0020280:31805-31824 | None:intergenic | 40.0% | |
| GGAACTACTAACTTTGTCCA+TGG | + | tig0020280:31829-31848 | Msa1379570:CDS | 40.0% | |
| !! | GTCTCCATTGGTCTTACAAT+TGG | + | tig0020280:31955-31974 | Msa1379570:CDS | 40.0% |
| GCTATGGCTATATGATCAGA+AGG | - | tig0020280:32098-32117 | None:intergenic | 40.0% | |
| ! | GGATTATCGGCATGGAATTT+TGG | + | tig0020280:32192-32211 | Msa1379570:intron | 40.0% |
| !! | GGAAAGGTGCTTTCTTGAAT+GGG | + | tig0020280:32303-32322 | Msa1379570:CDS | 40.0% |
| ! | CAGAGGACACACCTTTTATA+GGG | - | tig0020280:32331-32350 | None:intergenic | 40.0% |
| ! | ACAGAGGACACACCTTTTAT+AGG | - | tig0020280:32332-32351 | None:intergenic | 40.0% |
| ACAGGTACATGATAAGGACA+GGG | - | tig0020280:32551-32570 | None:intergenic | 40.0% | |
| TACAGGTACATGATAAGGAC+AGG | - | tig0020280:32552-32571 | None:intergenic | 40.0% | |
| CATGTACCTGTATCAATGTG+TGG | + | tig0020280:32560-32579 | Msa1379570:intron | 40.0% | |
| GTCATTCCACACATTGATAC+AGG | - | tig0020280:32569-32588 | None:intergenic | 40.0% | |
| ! | GCTTGTTAGTCTCCTGTATT+TGG | + | tig0020280:32658-32677 | Msa1379570:intron | 40.0% |
| GAAATGAGATTCTTCAGAGC+AGG | - | tig0020280:32920-32939 | None:intergenic | 40.0% | |
| TTAGGGCAGACATGTTAGAT+TGG | + | tig0020280:33081-33100 | Msa1379570:intron | 40.0% | |
| CAGATAGCAATCAAGACAGA+AGG | - | tig0020280:33109-33128 | None:intergenic | 40.0% | |
| !! | ATCACGTTGTAACTTGTTGG+GGG | - | tig0020280:33382-33401 | None:intergenic | 40.0% |
| !! | GATCACGTTGTAACTTGTTG+GGG | - | tig0020280:33383-33402 | None:intergenic | 40.0% |
| ! | GTGATCACGTTGTAACTTGT+TGG | - | tig0020280:33385-33404 | None:intergenic | 40.0% |
| ! | ATGTATACTTGGTGGGGAAT+GGG | - | tig0020280:33463-33482 | None:intergenic | 40.0% |
| GCTTGGAATTCTAATTGGCA+TGG | + | tig0020280:33520-33539 | Msa1379570:intron | 40.0% | |
| !! | TTTTTCCCTTCTGAAAGAGC+AGG | + | tig0020280:33621-33640 | Msa1379570:intron | 40.0% |
| TCACCTGACATATGGAAACA+GGG | - | tig0020280:33782-33801 | None:intergenic | 40.0% | |
| CTGGATGTGTTCTATGAAAC+TGG | + | tig0020280:33861-33880 | Msa1379570:CDS | 40.0% | |
| TGCAGGAAATACTCATACCA+TGG | - | tig0020280:33897-33916 | None:intergenic | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | + | tig0020280:33926-33945 | Msa1379570:intron | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | + | tig0020280:33926-33945 | Msa1379570:intron | 40.0% | |
| ! | CAATTTTCGAAATGTACGGG+TGG | - | tig0020280:34406-34425 | None:intergenic | 40.0% |
| ! | TTGCTCCAGAAGTGTATTTC+CGG | + | tig0020280:34423-34442 | Msa1379570:intron | 40.0% |
| ATTGTTCGGAAAGACACATC+TGG | + | tig0020280:34457-34476 | Msa1379570:intron | 40.0% | |
| AGTCTTAACCGTTAGGTCAA+AGG | - | tig0020280:34613-34632 | None:intergenic | 40.0% | |
| !! | AGACCCCTGATTCGTTTTAA+AGG | + | tig0020280:34635-34654 | Msa1379570:intron | 40.0% |
| ATTTGCTTTAGCCTAGTGGT+TGG | + | tig0020280:34762-34781 | Msa1379570:intron | 40.0% | |
| !! | TAGCCTAGTGGTTGGTTTAT+TGG | + | tig0020280:34770-34789 | Msa1379570:intron | 40.0% |
| !! | AGCCTAGTGGTTGGTTTATT+GGG | + | tig0020280:34771-34790 | Msa1379570:intron | 40.0% |
| ATCCCAATAAACCAACCACT+AGG | - | tig0020280:34776-34795 | None:intergenic | 40.0% | |
| !! | TAGTGGTTGGTTTATTGGGA+TGG | + | tig0020280:34775-34794 | Msa1379570:intron | 40.0% |
| GAAAGAGAGACCATGTGATT+AGG | - | tig0020280:34802-34821 | None:intergenic | 40.0% | |
| !! | GTTTTTGTTTGCTTCAGGTC+TGG | + | tig0020280:35174-35193 | Msa1379570:intron | 40.0% |
| CAATTGCATCCTTCAAGAGA+GGG | - | tig0020280:35242-35261 | None:intergenic | 40.0% | |
| ACAATTGCATCCTTCAAGAG+AGG | - | tig0020280:35243-35262 | None:intergenic | 40.0% | |
| !! | GTTTTGTTGAGTGTGGTGAG+TGG | + | tig0020280:30726-30745 | Msa1379570:five_prime_UTR | 45.0% |
| TTAGTGCGTTAGTAGGCGAA+AGG | + | tig0020280:30753-30772 | Msa1379570:five_prime_UTR | 45.0% | |
| GAAACGAGATGATACGGGAA+AGG | - | tig0020280:30810-30829 | None:intergenic | 45.0% | |
| GCACGTCGAACATAAAGGAT+CGG | + | tig0020280:31157-31176 | Msa1379570:CDS | 45.0% | |
| !! | GAAGAAACCACAGCTGCTTT+TGG | + | tig0020280:31757-31776 | Msa1379570:CDS | 45.0% |
| TGTAGTTCCAAAAGCAGCTG+TGG | - | tig0020280:31767-31786 | None:intergenic | 45.0% | |
| CAAGGGATCAACAATCCATG+TGG | - | tig0020280:31806-31825 | None:intergenic | 45.0% | |
| ! | CACATGGATTGTTGATCCCT+TGG | + | tig0020280:31804-31823 | Msa1379570:CDS | 45.0% |
| TGGATTGTTGATCCCTTGGA+TGG | + | tig0020280:31808-31827 | Msa1379570:CDS | 45.0% | |
| CAATGGAGACACAAACGAAG+GGG | - | tig0020280:31945-31964 | None:intergenic | 45.0% | |
| CCAATGGAGACACAAACGAA+GGG | - | tig0020280:31946-31965 | None:intergenic | 45.0% | |
| ACCAATGGAGACACAAACGA+AGG | - | tig0020280:31947-31966 | None:intergenic | 45.0% | |
| ! | TTGTACACAACACCGACTGT+TGG | - | tig0020280:31988-32007 | None:intergenic | 45.0% |
| !! | AGAAGCTTTGGAGCAATGGT+TGG | - | tig0020280:32122-32141 | None:intergenic | 45.0% |
| ! | TAGCTTTTCACTGCAGTCCA+TGG | + | tig0020280:32281-32300 | Msa1379570:intron | 45.0% |
| ! | AGCTTTTCACTGCAGTCCAT+GGG | + | tig0020280:32282-32301 | Msa1379570:intron | 45.0% |
| !! | TCAAGAAAGCACCTTTCCCA+TGG | - | tig0020280:32301-32320 | None:intergenic | 45.0% |
| !! | GGGAAAGGTGCTTTCTTGAA+TGG | + | tig0020280:32302-32321 | Msa1379570:CDS | 45.0% |
| GAACTCTCTTCTTGCAACTG+AGG | + | tig0020280:32444-32463 | Msa1379570:CDS | 45.0% | |
| !! | TCACGTTGTAACTTGTTGGG+GGG | - | tig0020280:33381-33400 | None:intergenic | 45.0% |
| CAACGTGATCACTGATCAGT+TGG | + | tig0020280:33393-33412 | Msa1379570:intron | 45.0% | |
| ! | TGTATACTTGGTGGGGAATG+GGG | - | tig0020280:33462-33481 | None:intergenic | 45.0% |
| ! | CATGTATACTTGGTGGGGAA+TGG | - | tig0020280:33464-33483 | None:intergenic | 45.0% |
| CTACCCTGTTTCCATATGTC+AGG | + | tig0020280:33776-33795 | Msa1379570:intron | 45.0% | |
| CTCACCTGACATATGGAAAC+AGG | - | tig0020280:33783-33802 | None:intergenic | 45.0% | |
| ! | TCCTGTGCTCTGAATCTTTG+TGG | + | tig0020280:33822-33841 | Msa1379570:CDS | 45.0% |
| TCCACAAAGATTCAGAGCAC+AGG | - | tig0020280:33826-33845 | None:intergenic | 45.0% | |
| TGGAATTGCATGTGGAAGAC+TGG | + | tig0020280:33842-33861 | Msa1379570:CDS | 45.0% | |
| !! | AAACTGGATTTGGTGGTCCA+TGG | + | tig0020280:33877-33896 | Msa1379570:CDS | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | - | tig0020280:33958-33977 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | + | tig0020280:33958-33977 | Msa1379570:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | + | tig0020280:33959-33978 | Msa1379570:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | + | tig0020280:33966-33985 | Msa1379570:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | - | tig0020280:33998-34017 | None:intergenic | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | + | tig0020280:34173-34192 | Msa1379570:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | + | tig0020280:34174-34193 | Msa1379570:intron | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | + | tig0020280:34192-34211 | Msa1379570:intron | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | - | tig0020280:33958-33977 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | + | tig0020280:33958-33977 | Msa1379570:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | + | tig0020280:33959-33978 | Msa1379570:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | + | tig0020280:33966-33985 | Msa1379570:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | - | tig0020280:33998-34017 | None:intergenic | 45.0% | |
| ! | TCCAGAAGTGTATTTCCGGA+CGG | + | tig0020280:34427-34446 | Msa1379570:intron | 45.0% |
| ! | CGAACAATTTTTGTCCCGTC+CGG | - | tig0020280:34445-34464 | None:intergenic | 45.0% |
| CGGACGGGACAAAAATTGTT+CGG | + | tig0020280:34443-34462 | Msa1379570:intron | 45.0% | |
| GGTCTTGAGTCTTAACCGTT+AGG | - | tig0020280:34620-34639 | None:intergenic | 45.0% | |
| TTGGGATGGTCCTAATCACA+TGG | + | tig0020280:34789-34808 | Msa1379570:intron | 45.0% | |
| ATCACATGGTCTCTCTTTCC+AGG | + | tig0020280:34803-34822 | Msa1379570:intron | 45.0% | |
| TCACATGGTCTCTCTTTCCA+GGG | + | tig0020280:34804-34823 | Msa1379570:intron | 45.0% | |
| GCTGTCATTGTTAGAGAAGC+TGG | + | tig0020280:34841-34860 | Msa1379570:CDS | 45.0% | |
| GTCATTGTTAGAGAAGCTGG+AGG | + | tig0020280:34844-34863 | Msa1379570:CDS | 45.0% | |
| GGTTGGATGTACATGCATTG+TGG | + | tig0020280:35038-35057 | Msa1379570:intron | 45.0% | |
| TTTGTTTGCTTCAGGTCTGG+TGG | + | tig0020280:35177-35196 | Msa1379570:intron | 45.0% | |
| TGCTTCAAACCCTCTCTTGA+AGG | + | tig0020280:35230-35249 | Msa1379570:CDS | 45.0% | |
| CTTAGTGCATCAGCATTACG+TGG | + | tig0020280:35477-35496 | Msa1379570:three_prime_UTR | 45.0% | |
| !!! | ATGCGGGGTTTTGTTGAGTG+TGG | + | tig0020280:30719-30738 | Msa1379570:five_prime_UTR | 50.0% |
| TCGCCTACTAACGCACTAAC+CGG | - | tig0020280:30752-30771 | None:intergenic | 50.0% | |
| TGCGTTAGTAGGCGAAAGGT+AGG | + | tig0020280:30757-30776 | Msa1379570:five_prime_UTR | 50.0% | |
| TAGTAGGCGAAAGGTAGGAC+AGG | + | tig0020280:30762-30781 | Msa1379570:five_prime_UTR | 50.0% | |
| ACGAGAGAGAGAGAGAGAGA+GGG | - | tig0020280:30886-30905 | None:intergenic | 50.0% | |
| AACGAGAGAGAGAGAGAGAG+AGG | - | tig0020280:30887-30906 | None:intergenic | 50.0% | |
| CCCTTCGTTTGTGTCTCCAT+TGG | + | tig0020280:31943-31962 | Msa1379570:CDS | 50.0% | |
| TGGAGCAATGGTTGGAGCTA+TGG | - | tig0020280:32114-32133 | None:intergenic | 50.0% | |
| TTCACTGCAGTCCATGGGAA+AGG | + | tig0020280:32287-32306 | Msa1379570:CDS | 50.0% | |
| TCCAGCCTGCTCTTTCAGAA+GGG | - | tig0020280:33629-33648 | None:intergenic | 50.0% | |
| TTCCAGCCTGCTCTTTCAGA+AGG | - | tig0020280:33630-33649 | None:intergenic | 50.0% | |
| GGCTGGAACAAAACGTGACA+AGG | + | tig0020280:33642-33661 | Msa1379570:intron | 50.0% | |
| CACTAGATGCGACCACCAAT+AGG | + | tig0020280:33668-33687 | Msa1379570:CDS | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | - | tig0020280:33952-33971 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | - | tig0020280:33953-33972 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | - | tig0020280:33962-33981 | None:intergenic | 50.0% | |
| GGGAGAGAAGGGAAGATTGA+GGG | + | tig0020280:34148-34167 | Msa1379570:intron | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | + | tig0020280:34149-34168 | Msa1379570:intron | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | + | tig0020280:34169-34188 | Msa1379570:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | + | tig0020280:34175-34194 | Msa1379570:intron | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | + | tig0020280:34191-34210 | Msa1379570:intron | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | - | tig0020280:34201-34220 | None:intergenic | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | - | tig0020280:33952-33971 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | - | tig0020280:33953-33972 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | - | tig0020280:33962-33981 | None:intergenic | 50.0% | |
| ! | CCAGAAGTGTATTTCCGGAC+GGG | + | tig0020280:34428-34447 | Msa1379570:intron | 50.0% |
| CCTCGGCCCTAAAATAACTC+CGG | - | tig0020280:34529-34548 | None:intergenic | 50.0% | |
| !!! | CGGAGTTATTTTAGGGCCGA+GGG | + | tig0020280:34527-34546 | Msa1379570:intron | 50.0% |
| TGTTGAGTGTGGTGAGTGGC+CGG | + | tig0020280:30730-30749 | Msa1379570:five_prime_UTR | 55.0% | |
| TGGCCGGTTAGTGCGTTAGT+AGG | + | tig0020280:30746-30765 | Msa1379570:five_prime_UTR | 55.0% | |
| AGGCGAAAGGTAGGACAGGA+AGG | + | tig0020280:30766-30785 | Msa1379570:five_prime_UTR | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+GGG | - | tig0020280:30883-30902 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGAGG+GGG | - | tig0020280:30884-30903 | None:intergenic | 55.0% | |
| CGAGAGAGAGAGAGAGAGAG+GGG | - | tig0020280:30885-30904 | None:intergenic | 55.0% | |
| GTCGACGCTGCTCATAAAGC+TGG | + | tig0020280:31014-31033 | Msa1379570:CDS | 55.0% | |
| ! | TCCCTTCTGAAAGAGCAGGC+TGG | + | tig0020280:33625-33644 | Msa1379570:intron | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | + | tig0020280:33943-33962 | Msa1379570:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | + | tig0020280:33944-33963 | Msa1379570:intron | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+AGG | + | tig0020280:34147-34166 | Msa1379570:intron | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | + | tig0020280:34158-34177 | Msa1379570:intron | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | + | tig0020280:34168-34187 | Msa1379570:intron | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | + | tig0020280:34184-34203 | Msa1379570:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | + | tig0020280:34195-34214 | Msa1379570:intron | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | + | tig0020280:33943-33962 | Msa1379570:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | + | tig0020280:33944-33963 | Msa1379570:intron | 55.0% | |
| CCCGTCCGGAAATACACTTC+TGG | - | tig0020280:34431-34450 | None:intergenic | 55.0% | |
| !!! | CCGGAGTTATTTTAGGGCCG+AGG | + | tig0020280:34526-34545 | Msa1379570:intron | 55.0% |
| GGTCTCTCTTTCCAGGGATG+TGG | + | tig0020280:34810-34829 | Msa1379570:intron | 55.0% | |
| TCTCTTTCCAGGGATGTGGC+AGG | + | tig0020280:34814-34833 | Msa1379570:intron | 55.0% | |
| CTTTCCAGGGATGTGGCAGG+TGG | + | tig0020280:34817-34836 | Msa1379570:intron | 60.0% | |
| !! | CAGCGTCGACAGCAGATGCG+AGG | - | tig0020280:31004-31023 | None:intergenic | 65.0% |
| AGCACCACCTGCCACATCCC+TGG | - | tig0020280:34824-34843 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020280 | gene | 30701 | 35587 | 30701 | ID=Msa1379570;Name=Msa1379570 |
| tig0020280 | mRNA | 30701 | 35587 | 30701 | ID=Msa1379570-mRNA-1;Parent=Msa1379570;Name=Msa1379570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=160|1|1|1|1|1|12|300|271 |
| tig0020280 | exon | 30701 | 30876 | 30701 | ID=Msa1379570-mRNA-1:exon:6646;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 30985 | 31040 | 30985 | ID=Msa1379570-mRNA-1:exon:6647;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 31128 | 31178 | 31128 | ID=Msa1379570-mRNA-1:exon:6648;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 31552 | 31632 | 31552 | ID=Msa1379570-mRNA-1:exon:6649;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 31748 | 31851 | 31748 | ID=Msa1379570-mRNA-1:exon:6650;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 31939 | 32023 | 31939 | ID=Msa1379570-mRNA-1:exon:6651;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 32284 | 32338 | 32284 | ID=Msa1379570-mRNA-1:exon:6652;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 32422 | 32465 | 32422 | ID=Msa1379570-mRNA-1:exon:6653;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 33643 | 33711 | 33643 | ID=Msa1379570-mRNA-1:exon:6654;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 33798 | 33898 | 33798 | ID=Msa1379570-mRNA-1:exon:6655;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 34825 | 34881 | 34825 | ID=Msa1379570-mRNA-1:exon:6656;Parent=Msa1379570-mRNA-1 |
| tig0020280 | exon | 35191 | 35587 | 35191 | ID=Msa1379570-mRNA-1:exon:6657;Parent=Msa1379570-mRNA-1 |
| tig0020280 | five_prime_UTR | 30701 | 30860 | 30701 | ID=Msa1379570-mRNA-1:five_prime_utr;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 30861 | 30876 | 30861 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 30985 | 31040 | 30985 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 31128 | 31178 | 31128 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 31552 | 31632 | 31552 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 31748 | 31851 | 31748 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 31939 | 32023 | 31939 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 32284 | 32338 | 32284 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 32422 | 32465 | 32422 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 33643 | 33711 | 33643 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 33798 | 33898 | 33798 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 34825 | 34881 | 34825 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | CDS | 35191 | 35287 | 35191 | ID=Msa1379570-mRNA-1:cds;Parent=Msa1379570-mRNA-1 |
| tig0020280 | three_prime_UTR | 35288 | 35587 | 35288 | ID=Msa1379570-mRNA-1:three_prime_utr;Parent=Msa1379570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
