Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277400 | XP_003594243.1 | 98.893 | 271 | 3 | 0 | 1 | 271 | 1 | 271 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277400 | sp|Q9M8S8|VTC4_ARATH | 79.259 | 270 | 55 | 1 | 1 | 270 | 1 | 269 | 8.21e-156 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277400 | G7IP84 | 98.893 | 271 | 3 | 0 | 1 | 271 | 1 | 271 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197300 | Msa0277400 | 0.876108 | 1.813794e-68 | -8.615850e-47 |
| Msa0239340 | Msa0277400 | 0.883392 | 4.665167e-71 | -8.615850e-47 |
| Msa0277400 | Msa0374070 | 0.812084 | 5.065042e-51 | -8.615850e-47 |
| Msa0277400 | Msa0388160 | 0.834147 | 3.545488e-56 | -8.615850e-47 |
| Msa0277400 | Msa0413720 | 0.816388 | 5.675645e-52 | -8.615850e-47 |
| Msa0277400 | Msa0423250 | 0.812856 | 3.434509e-51 | -8.615850e-47 |
| Msa0277400 | Msa0426160 | 0.805374 | 1.377023e-49 | -8.615850e-47 |
| Msa0277400 | Msa0469390 | 0.808301 | 3.313295e-50 | -8.615850e-47 |
| Msa0277400 | Msa0505370 | 0.822141 | 2.776644e-53 | -8.615850e-47 |
| Msa0277400 | Msa0788410 | 0.810425 | 1.159963e-50 | -8.615850e-47 |
| Msa0277400 | Msa0829800 | 0.801057 | 1.077243e-48 | -8.615850e-47 |
| Msa0277400 | Msa0864630 | 0.816355 | 5.772211e-52 | -8.615850e-47 |
| Msa0277400 | Msa1018790 | 0.807492 | 4.922342e-50 | -8.615850e-47 |
| Msa0277400 | Msa1379570 | 0.897639 | 1.156952e-76 | -8.615850e-47 |
| Msa0277400 | Msa1379990 | 0.802457 | 5.558824e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277400 | MtrunA17_Chr2g0290121 | 98.529 | 272 | 3 | 1 | 1 | 271 | 1 | 272 | 0.0 | 544 |
| Msa0277400 | MtrunA17_Chr2g0306101 | 34.091 | 264 | 161 | 6 | 11 | 267 | 66 | 323 | 3.39e-39 | 139 |
| Msa0277400 | MtrunA17_Chr3g0145001 | 28.333 | 240 | 157 | 6 | 7 | 242 | 62 | 290 | 7.82e-21 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277400 | AT3G02870.1 | 79.259 | 270 | 55 | 1 | 1 | 270 | 1 | 269 | 8.35e-157 | 437 |
| Msa0277400 | AT3G02870.3 | 78.148 | 270 | 55 | 1 | 1 | 270 | 1 | 266 | 2.29e-154 | 431 |
| Msa0277400 | AT3G02870.2 | 78.519 | 270 | 55 | 2 | 1 | 270 | 1 | 267 | 1.48e-153 | 429 |
| Msa0277400 | AT1G31190.1 | 33.955 | 268 | 155 | 8 | 12 | 267 | 87 | 344 | 1.39e-35 | 131 |
| Msa0277400 | AT4G39120.1 | 26.848 | 257 | 172 | 5 | 4 | 255 | 79 | 324 | 1.20e-20 | 90.1 |
| Msa0277400 | AT4G39120.2 | 26.848 | 257 | 172 | 5 | 4 | 255 | 108 | 353 | 1.74e-20 | 90.1 |
Find 85 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTATCCGATAAAATTAT+TGG | 0.175221 | 2_3:+9938702 | Msa0277400:three_prime_UTR |
| AATAAAAGACGGAAGCTTTC+GGG | 0.238935 | 2_3:-9938856 | None:intergenic |
| TACCACACCTCATTGATTAT+TGG | 0.252568 | 2_3:-9935308 | None:intergenic |
| TTGAATGGGAACCCTATAAA+AGG | 0.275907 | 2_3:+9935616 | Msa0277400:CDS |
| TTTATTATTAATCTATGATT+AGG | 0.298511 | 2_3:+9938599 | Msa0277400:three_prime_UTR |
| TATGTTCGACGTGCTTAGTT+TGG | 0.301815 | 2_3:-9934451 | None:intergenic |
| GAAGAAACCACAGCTGCTTT+TGG | 0.311320 | 2_3:+9935056 | Msa0277400:CDS |
| TAATAAAAGACGGAAGCTTT+CGG | 0.332087 | 2_3:-9938857 | None:intergenic |
| GTCTCCATTGGTCTTACAAT+TGG | 0.356667 | 2_3:+9935254 | Msa0277400:CDS |
| CTGGATGTGTTCTATGAAAC+TGG | 0.361010 | 2_3:+9937160 | Msa0277400:CDS |
| ATGTTCGACGTGCTTAGTTT+GGG | 0.361457 | 2_3:-9934450 | None:intergenic |
| AAGCAAACTATTAATCCTAT+TGG | 0.366970 | 2_3:-9936982 | None:intergenic |
| GGGAAAGGTGCTTTCTTGAA+TGG | 0.393210 | 2_3:+9935601 | Msa0277400:CDS |
| TTATGTTTCGCAGGTTGATT+TGG | 0.403023 | 2_3:+9934838 | Msa0277400:intron |
| AGTGTCATCACAAACTGAAT+TGG | 0.403212 | 2_3:+9935719 | Msa0277400:intron |
| TTGTGGTCTTATTAGTTCAT+TGG | 0.409883 | 2_3:+9935032 | Msa0277400:intron |
| CCCTTCGTTTGTGTCTCCAT+TGG | 0.411102 | 2_3:+9935242 | Msa0277400:CDS |
| TGCTTCAAACCCTCTCTTGA+AGG | 0.415374 | 2_3:+9938529 | Msa0277400:CDS |
| CACATGGATTGTTGATCCCT+TGG | 0.431815 | 2_3:+9935103 | Msa0277400:CDS |
| ACTAAGCACGTCGAACATAA+AGG | 0.438472 | 2_3:+9934455 | Msa0277400:CDS |
| GGAAAGGTGCTTTCTTGAAT+GGG | 0.450317 | 2_3:+9935602 | Msa0277400:CDS |
| GATTAATAGTTTGCTTTACA+AGG | 0.459303 | 2_3:+9936989 | Msa0277400:CDS |
| GTGTTCTATGAAACTGGATT+TGG | 0.463035 | 2_3:+9937166 | Msa0277400:CDS |
| TCTCTTTCCAGGGATGTGGC+AGG | 0.464025 | 2_3:+9938113 | Msa0277400:intron |
| ACAGCTTTATCCCACTCATA+AGG | 0.465552 | 2_3:+9934910 | Msa0277400:CDS |
| CACTAGATGCGACCACCAAT+AGG | 0.470798 | 2_3:+9936967 | Msa0277400:CDS |
| GCTGTCATTGTTAGAGAAGC+TGG | 0.476874 | 2_3:+9938140 | Msa0277400:CDS |
| TTCTATGAAACTGGATTTGG+TGG | 0.477412 | 2_3:+9937169 | Msa0277400:CDS |
| TCATATCAGGTTATTCGAAA+AGG | 0.480344 | 2_3:+9934422 | Msa0277400:intron |
| TGGAATTGCATGTGGAAGAC+TGG | 0.486197 | 2_3:+9937141 | Msa0277400:CDS |
| TCCTGTGCTCTGAATCTTTG+TGG | 0.486333 | 2_3:+9937121 | Msa0277400:CDS |
| GGTCTCTCTTTCCAGGGATG+TGG | 0.490417 | 2_3:+9938109 | Msa0277400:intron |
| TGAACAGAAACGAGATGATA+CGG | 0.495443 | 2_3:-9934086 | None:intergenic |
| TGTTGAGTGTGGTGAGTGGC+CGG | 0.503182 | 2_3:+9934003 | Msa0277400:five_prime_UTR |
| CAATTGCATCCTTCAAGAGA+GGG | 0.521161 | 2_3:-9938538 | None:intergenic |
| TCGCCTACTAACGCACTAAC+CGG | 0.533062 | 2_3:-9934022 | None:intergenic |
| AAGTGACTTATATCATTGAA+TGG | 0.535490 | 2_3:-9938757 | None:intergenic |
| TTCACTGCAGTCCATGGGAA+AGG | 0.541447 | 2_3:+9935586 | Msa0277400:CDS |
| TAGTAGGCGAAAGGTAGGAC+AGG | 0.549833 | 2_3:+9934035 | Msa0277400:five_prime_UTR |
| TCAAGAAAGCACCTTTCCCA+TGG | 0.553403 | 2_3:-9935597 | None:intergenic |
| CAAACTATTAATCCTATTGG+TGG | 0.553541 | 2_3:-9936979 | None:intergenic |
| AGTACATAAAAGACACATGC+GGG | 0.560887 | 2_3:+9933976 | Msa0277400:five_prime_UTR |
| TTTGTTTGCTTCAGGTCTGG+TGG | 0.561709 | 2_3:+9938476 | Msa0277400:intron |
| AGGCGAAAGGTAGGACAGGA+AGG | 0.565104 | 2_3:+9934039 | Msa0277400:five_prime_UTR |
| TGGATTGTTGATCCCTTGGA+TGG | 0.566106 | 2_3:+9935107 | Msa0277400:CDS |
| GTCGACGCTGCTCATAAAGC+TGG | 0.566423 | 2_3:+9934291 | Msa0277400:CDS |
| GGAACTACTAACTTTGTGCA+TGG | 0.566745 | 2_3:+9935128 | Msa0277400:CDS |
| TCCACAAAGATTCAGAGCAC+AGG | 0.570894 | 2_3:-9937122 | None:intergenic |
| GGCTGGAACAAAACGTGACA+AGG | 0.572747 | 2_3:+9936941 | Msa0277400:intron |
| CTTTCCAGGGATGTGGCAGG+TGG | 0.578921 | 2_3:+9938116 | Msa0277400:intron |
| TGTAGTTCCAAAAGCAGCTG+TGG | 0.579976 | 2_3:-9935063 | None:intergenic |
| GAACAGAAACGAGATGATAC+GGG | 0.581281 | 2_3:-9934085 | None:intergenic |
| AAAGTTAGTAGTTCCATCCA+AGG | 0.583222 | 2_3:-9935120 | None:intergenic |
| TGGCCGGTTAGTGCGTTAGT+AGG | 0.587865 | 2_3:+9934019 | Msa0277400:five_prime_UTR |
| TGCGTTAGTAGGCGAAAGGT+AGG | 0.588989 | 2_3:+9934030 | Msa0277400:five_prime_UTR |
| GAACTACTAACTTTGTGCAT+GGG | 0.591023 | 2_3:+9935129 | Msa0277400:CDS |
| CCAATGGAGACACAAACGAA+GGG | 0.595236 | 2_3:-9935242 | None:intergenic |
| ACAATTGCATCCTTCAAGAG+AGG | 0.597192 | 2_3:-9938539 | None:intergenic |
| TTGTACACAACACCGACTGT+TGG | 0.598803 | 2_3:-9935284 | None:intergenic |
| CTATCAGAACAGAACAAACA+TGG | 0.603365 | 2_3:+9934115 | Msa0277400:exon |
| GAACTCTCTTCTTGCAACTG+AGG | 0.612995 | 2_3:+9935743 | Msa0277400:CDS |
| TCGGAATGAACCTTATGAGT+GGG | 0.614146 | 2_3:-9934920 | None:intergenic |
| ATCGGAATGAACCTTATGAG+TGG | 0.614350 | 2_3:-9934921 | None:intergenic |
| AATCACACCATAATAAAAGA+CGG | 0.614759 | 2_3:-9938867 | None:intergenic |
| TTTAATCAAGTTCATTCACA+TGG | 0.618186 | 2_3:+9938818 | Msa0277400:three_prime_UTR |
| AATCTTTGTGGAATTGCATG+TGG | 0.620245 | 2_3:+9937133 | Msa0277400:CDS |
| AAACTGGATTTGGTGGTCCA+TGG | 0.624338 | 2_3:+9937176 | Msa0277400:CDS |
| CAGCGTCGACAGCAGATGCG+AGG | 0.636535 | 2_3:-9934278 | None:intergenic |
| GTGAGATCTATTAGAATGAG+CGG | 0.638610 | 2_3:+9937097 | Msa0277400:CDS |
| GAAACGAGATGATACGGGAA+AGG | 0.639370 | 2_3:-9934080 | None:intergenic |
| CAATGGAGACACAAACGAAG+GGG | 0.643264 | 2_3:-9935241 | None:intergenic |
| AAGTTAGTAGTTCCATCCAA+GGG | 0.647544 | 2_3:-9935119 | None:intergenic |
| GCACGTCGAACATAAAGGAT+CGG | 0.652028 | 2_3:+9934460 | Msa0277400:CDS |
| ATTGGAAAAGTTCCAACAGT+CGG | 0.655715 | 2_3:+9935272 | Msa0277400:CDS |
| TTAGTGCGTTAGTAGGCGAA+AGG | 0.660502 | 2_3:+9934026 | Msa0277400:five_prime_UTR |
| CAAGGGATCAACAATCCATG+TGG | 0.665230 | 2_3:-9935102 | None:intergenic |
| AACTTACAGATGATCCCACA+TGG | 0.672174 | 2_3:+9935087 | Msa0277400:CDS |
| AAGGGATCAACAATCCATGT+GGG | 0.674293 | 2_3:-9935101 | None:intergenic |
| ACCAATGGAGACACAAACGA+AGG | 0.679016 | 2_3:-9935243 | None:intergenic |
| ACAAACATGGCTGACAACAA+CGG | 0.681445 | 2_3:+9934128 | Msa0277400:exon |
| GTACAATCCAATAATCAATG+AGG | 0.684726 | 2_3:+9935301 | Msa0277400:CDS |
| CTTAGTGCATCAGCATTACG+TGG | 0.685460 | 2_3:+9938777 | Msa0277400:three_prime_UTR |
| TAGTACATAAAAGACACATG+CGG | 0.724510 | 2_3:+9933975 | Msa0277400:five_prime_UTR |
| GTCATTGTTAGAGAAGCTGG+AGG | 0.743505 | 2_3:+9938143 | Msa0277400:CDS |
| GTACATAAAAGACACATGCG+GGG | 0.762189 | 2_3:+9933977 | Msa0277400:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATAAATTTTACAGAAT+TGG | - | chr2_3:9936241-9936260 | None:intergenic | 10.0% |
| !! | TTAAAAATATACAGATAATT+TGG | - | chr2_3:9936289-9936308 | None:intergenic | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | + | chr2_3:9937426-9937445 | Msa0277400:intron | 10.0% |
| !! | TTTATTATTAATCTATGATT+AGG | + | chr2_3:9938599-9938618 | Msa0277400:three_prime_UTR | 10.0% |
| !!! | AGAAAAATTTAATGATTTTG+TGG | - | chr2_3:9935368-9935387 | None:intergenic | 15.0% |
| !! | TTTAGGAATATTATTCAATA+AGG | + | chr2_3:9935470-9935489 | Msa0277400:intron | 15.0% |
| !! | TATTATTCAATAAGGATTAT+CGG | + | chr2_3:9935478-9935497 | Msa0277400:intron | 15.0% |
| !! | AGAAATAAAAAACTTATCTA+GGG | - | chr2_3:9936462-9936481 | None:intergenic | 15.0% |
| !! | TAGAAATAAAAAACTTATCT+AGG | - | chr2_3:9936463-9936482 | None:intergenic | 15.0% |
| !! | AGTTAATTCAAAAAAATTCA+TGG | - | chr2_3:9937030-9937049 | None:intergenic | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | + | chr2_3:9937425-9937444 | Msa0277400:intron | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | + | chr2_3:9937427-9937446 | Msa0277400:intron | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | + | chr2_3:9937538-9937557 | Msa0277400:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | + | chr2_3:9937539-9937558 | Msa0277400:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | - | chr2_3:9937570-9937589 | None:intergenic | 15.0% |
| !! | ATAATAGCTTATGTTAAAAA+TGG | + | chr2_3:9937886-9937905 | Msa0277400:intron | 15.0% |
| !!! | TTTTCTTATGTTAAATTGTA+AGG | + | chr2_3:9937999-9938018 | Msa0277400:intron | 15.0% |
| !! | TACATTATGTATCTATAAAA+TGG | - | chr2_3:9938312-9938331 | None:intergenic | 15.0% |
| !!! | AATCAAAACAATCAATTTTT+TGG | + | chr2_3:9938674-9938693 | Msa0277400:three_prime_UTR | 15.0% |
| !! | AAATTATCCGATAAAATTAT+TGG | + | chr2_3:9938702-9938721 | Msa0277400:three_prime_UTR | 15.0% |
| !!! | AATTACTCCAATAATTTTAT+CGG | - | chr2_3:9938712-9938731 | None:intergenic | 15.0% |
| !! | ATTCTTTCTTATATCATATC+AGG | + | chr2_3:9934409-9934428 | Msa0277400:intron | 20.0% |
| !!! | TGATTTGAATTTGAGATTTT+AGG | - | chr2_3:9934522-9934541 | None:intergenic | 20.0% |
| !! | ACAATAATAAGTGAAATCAA+CGG | - | chr2_3:9934574-9934593 | None:intergenic | 20.0% |
| !!! | ATTTTTCATTGATTATAAGC+TGG | - | chr2_3:9934787-9934806 | None:intergenic | 20.0% |
| !! | CAAAAACATTATATGATTAG+AGG | - | chr2_3:9934950-9934969 | None:intergenic | 20.0% |
| !!! | CATATAATGTTTTTGATTAG+TGG | + | chr2_3:9934955-9934974 | Msa0277400:intron | 20.0% |
| !! | TTAGTCCAATATGTAAATAT+GGG | - | chr2_3:9935200-9935219 | None:intergenic | 20.0% |
| !! | TTTAGTCCAATATGTAAATA+TGG | - | chr2_3:9935201-9935220 | None:intergenic | 20.0% |
| !!! | TAGTATGCAAATTGAAATTT+TGG | + | chr2_3:9935544-9935563 | Msa0277400:intron | 20.0% |
| !! | TTTATTATTGTTTATGTGGT+TGG | - | chr2_3:9935937-9935956 | None:intergenic | 20.0% |
| !!! | AAGCTTTATTATTGTTTATG+TGG | - | chr2_3:9935941-9935960 | None:intergenic | 20.0% |
| !! | TAAAACTTGGAATATTAAGT+GGG | - | chr2_3:9936431-9936450 | None:intergenic | 20.0% |
| !! | TTAAAACTTGGAATATTAAG+TGG | - | chr2_3:9936432-9936451 | None:intergenic | 20.0% |
| !! | GTAAAAAATACATGTATACT+TGG | - | chr2_3:9936773-9936792 | None:intergenic | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | + | chr2_3:9937205-9937224 | Msa0277400:intron | 20.0% |
| !! | TCTAATATATTCGAAATGTA+CGG | - | chr2_3:9937310-9937329 | None:intergenic | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | + | chr2_3:9937399-9937418 | Msa0277400:intron | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | + | chr2_3:9937400-9937419 | Msa0277400:intron | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | - | chr2_3:9937571-9937590 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | + | chr2_3:9937572-9937591 | Msa0277400:intron | 20.0% |
| !!! | TATTTCCTGCATATTTTTTT+TGG | + | chr2_3:9937205-9937224 | Msa0277400:intron | 20.0% |
| !!! | GTTTTATGTATGAATCTTAT+AGG | + | chr2_3:9937956-9937975 | Msa0277400:intron | 20.0% |
| !! | TATTTAAGCAAAGTTACTTA+CGG | - | chr2_3:9938182-9938201 | None:intergenic | 20.0% |
| !! | ATAGATACATAATGTAATCA+TGG | + | chr2_3:9938316-9938335 | Msa0277400:intron | 20.0% |
| !!! | ACATTACATTTTTTCACTAT+TGG | + | chr2_3:9938363-9938382 | Msa0277400:intron | 20.0% |
| !!! | AATTGATAGTGATAGATGAA+GGG | - | chr2_3:9934379-9934398 | None:intergenic | 25.0% |
| !!! | AAATTGATAGTGATAGATGA+AGG | - | chr2_3:9934380-9934399 | None:intergenic | 25.0% |
| ! | GAGAAAAAATAGAAGAGAAT+GGG | - | chr2_3:9934493-9934512 | None:intergenic | 25.0% |
| ! | AGAGAAAAAATAGAAGAGAA+TGG | - | chr2_3:9934494-9934513 | None:intergenic | 25.0% |
| !!! | TTGAATTTGAGATTTTAGGA+TGG | - | chr2_3:9934518-9934537 | None:intergenic | 25.0% |
| ! | AGAAATAAGTAAGTAGTTTG+AGG | + | chr2_3:9934668-9934687 | Msa0277400:intron | 25.0% |
| !! | TTACTTGTTAGTAATGTGAT+TGG | + | chr2_3:9934728-9934747 | Msa0277400:intron | 25.0% |
| ! | TTATATGATTAGAGGAAGAT+CGG | - | chr2_3:9934942-9934961 | None:intergenic | 25.0% |
| !!! | TTTTTGATTAGTGGCTATTA+TGG | + | chr2_3:9934964-9934983 | Msa0277400:intron | 25.0% |
| !! | ATTTCTGATCTTTTCTTTGA+TGG | + | chr2_3:9935160-9935179 | Msa0277400:intron | 25.0% |
| !! | TTTCTGATCTTTTCTTTGAT+GGG | + | chr2_3:9935161-9935180 | Msa0277400:intron | 25.0% |
| !! | ATATGTAAATATGGGAGTAT+CGG | - | chr2_3:9935192-9935211 | None:intergenic | 25.0% |
| ! | ATACTCCCATATTTACATAT+TGG | + | chr2_3:9935192-9935211 | Msa0277400:intron | 25.0% |
| ! | CTAAAAATTATACTATCTGC+AGG | + | chr2_3:9935216-9935235 | Msa0277400:intron | 25.0% |
| ! | CTTAAAATGATTCTTCAAGA+AGG | - | chr2_3:9935338-9935357 | None:intergenic | 25.0% |
| ! | AAATTTCCAAAAAGAAGCTT+TGG | - | chr2_3:9935433-9935452 | None:intergenic | 25.0% |
| ! | GACATTGAAGTGATTAATTT+AGG | + | chr2_3:9935453-9935472 | Msa0277400:intron | 25.0% |
| ! | ATAACAGTATAAGGCAAATT+AGG | - | chr2_3:9935990-9936009 | None:intergenic | 25.0% |
| ! | AAGTCATGTATAACAGTATA+AGG | - | chr2_3:9935999-9936018 | None:intergenic | 25.0% |
| ! | CAATTGTATAGGAAATATCA+AGG | - | chr2_3:9936184-9936203 | None:intergenic | 25.0% |
| ! | CTTGATATTTCCTATACAAT+TGG | + | chr2_3:9936182-9936201 | Msa0277400:intron | 25.0% |
| ! | TACTTCTTTACCAATTGTAT+AGG | - | chr2_3:9936195-9936214 | None:intergenic | 25.0% |
| !!! | AAATGATTTTAAAGCGTCTT+AGG | + | chr2_3:9936362-9936381 | Msa0277400:intron | 25.0% |
| !!! | AATGATTTTAAAGCGTCTTA+GGG | + | chr2_3:9936363-9936382 | Msa0277400:intron | 25.0% |
| ! | AAAATACATGTATACTTGGT+GGG | - | chr2_3:9936769-9936788 | None:intergenic | 25.0% |
| ! | AAAAATACATGTATACTTGG+TGG | - | chr2_3:9936770-9936789 | None:intergenic | 25.0% |
| ! | TGGAAATCTTACTAATTGTA+AGG | - | chr2_3:9936795-9936814 | None:intergenic | 25.0% |
| ! | AATTAGAATTCCAAGCATTA+TGG | - | chr2_3:9936815-9936834 | None:intergenic | 25.0% |
| ! | ATAATGCTTGGAATTCTAAT+TGG | + | chr2_3:9936814-9936833 | Msa0277400:intron | 25.0% |
| !!! | AATATCAAGATTATTGGTTC+AGG | + | chr2_3:9936842-9936861 | Msa0277400:intron | 25.0% |
| ! | AAGCAAACTATTAATCCTAT+TGG | - | chr2_3:9936985-9937004 | None:intergenic | 25.0% |
| !!! | GATTAATAGTTTGCTTTACA+AGG | + | chr2_3:9936989-9937008 | Msa0277400:CDS | 25.0% |
| ! | CTAATATATTCGAAATGTAC+GGG | - | chr2_3:9937309-9937328 | None:intergenic | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | + | chr2_3:9937355-9937374 | Msa0277400:intron | 25.0% |
| !!! | AAAACCTTTAAAACGAATCA+GGG | - | chr2_3:9937941-9937960 | None:intergenic | 25.0% |
| !!! | TAAAACCTTTAAAACGAATC+AGG | - | chr2_3:9937942-9937961 | None:intergenic | 25.0% |
| ! | ATACATAATGTAATCATGGT+TGG | + | chr2_3:9938320-9938339 | Msa0277400:intron | 25.0% |
| !!! | TACATTTTTTCACTATTGGT+AGG | + | chr2_3:9938367-9938386 | Msa0277400:intron | 25.0% |
| !! | ATTTCAATTTTCACTCAGTT+TGG | - | chr2_3:9938577-9938596 | None:intergenic | 25.0% |
| ! | AAGTGACTTATATCATTGAA+TGG | - | chr2_3:9938760-9938779 | None:intergenic | 25.0% |
| ! | TTTAATCAAGTTCATTCACA+TGG | + | chr2_3:9938818-9938837 | Msa0277400:three_prime_UTR | 25.0% |
| TAGTACATAAAAGACACATG+CGG | + | chr2_3:9933975-9933994 | Msa0277400:five_prime_UTR | 30.0% | |
| TCATATCAGGTTATTCGAAA+AGG | + | chr2_3:9934422-9934441 | Msa0277400:intron | 30.0% | |
| ATAATAAGTGAAATCAACGG+CGG | - | chr2_3:9934571-9934590 | None:intergenic | 30.0% | |
| ! | ATATCTTTGTTATGTTTCGC+AGG | + | chr2_3:9934829-9934848 | Msa0277400:intron | 30.0% |
| CTGAAGTTCATTTGTATTTG+TGG | + | chr2_3:9935015-9935034 | Msa0277400:intron | 30.0% | |
| !! | TTGTGGTCTTATTAGTTCAT+TGG | + | chr2_3:9935032-9935051 | Msa0277400:intron | 30.0% |
| ! | TTCTGATCTTTTCTTTGATG+GGG | + | chr2_3:9935162-9935181 | Msa0277400:intron | 30.0% |
| ! | TTTTCCAATTGTAAGACCAA+TGG | - | chr2_3:9935261-9935280 | None:intergenic | 30.0% |
| GTACAATCCAATAATCAATG+AGG | + | chr2_3:9935301-9935320 | Msa0277400:CDS | 30.0% | |
| ATTTGCATACTAAGCAATGA+AGG | - | chr2_3:9935536-9935555 | None:intergenic | 30.0% | |
| ATTGATACAGGTACATGATA+AGG | - | chr2_3:9935856-9935875 | None:intergenic | 30.0% | |
| AATGACCAACAAAATCAGAA+TGG | + | chr2_3:9935882-9935901 | Msa0277400:intron | 30.0% | |
| ! | AAGAACCATTCTGATTTTGT+TGG | - | chr2_3:9935890-9935909 | None:intergenic | 30.0% |
| TTATACCCTCAAAGTTTATG+TGG | + | chr2_3:9936256-9936275 | Msa0277400:intron | 30.0% | |
| TAGGGAATAAGCTTAAAACT+TGG | - | chr2_3:9936444-9936463 | None:intergenic | 30.0% | |
| GCTTATCAAACACTTATCTA+GGG | - | chr2_3:9936498-9936517 | None:intergenic | 30.0% | |
| AGCTTATCAAACACTTATCT+AGG | - | chr2_3:9936499-9936518 | None:intergenic | 30.0% | |
| AATCACTAATCCCACTTAAA+AGG | + | chr2_3:9936730-9936749 | Msa0277400:intron | 30.0% | |
| ! | AAATACATGTATACTTGGTG+GGG | - | chr2_3:9936768-9936787 | None:intergenic | 30.0% |
| AGTAAGATTTCCATAATGCT+TGG | + | chr2_3:9936802-9936821 | Msa0277400:intron | 30.0% | |
| GCATGGAATATCAAGATTAT+TGG | + | chr2_3:9936836-9936855 | Msa0277400:intron | 30.0% | |
| !! | CAAACAGTCATTGATTCAAA+AGG | - | chr2_3:9936887-9936906 | None:intergenic | 30.0% |
| CAAACTATTAATCCTATTGG+TGG | - | chr2_3:9936982-9937001 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | - | chr2_3:9937213-9937232 | None:intergenic | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | - | chr2_3:9937526-9937545 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | - | chr2_3:9937527-9937546 | None:intergenic | 30.0% | |
| CAATGCCAAAAAAAATATGC+AGG | - | chr2_3:9937213-9937232 | None:intergenic | 30.0% | |
| TATTAGAGAAAAAGTTCCCT+CGG | - | chr2_3:9937845-9937864 | None:intergenic | 30.0% | |
| !! | AAACCTTTAAAACGAATCAG+GGG | - | chr2_3:9937940-9937959 | None:intergenic | 30.0% |
| ATCCTCTATTCTTAACTTAG+TGG | + | chr2_3:9938208-9938227 | Msa0277400:intron | 30.0% | |
| TTCCACTAAGTTAAGAATAG+AGG | - | chr2_3:9938213-9938232 | None:intergenic | 30.0% | |
| !!! | TAGACTGTTTTTGCATAGTT+AGG | + | chr2_3:9938254-9938273 | Msa0277400:intron | 30.0% |
| TAATAAAAGACGGAAGCTTT+CGG | - | chr2_3:9938860-9938879 | None:intergenic | 30.0% | |
| ! | AAAGCTTCCGTCTTTTATTA+TGG | + | chr2_3:9938860-9938879 | Msa0277400:three_prime_UTR | 30.0% |
| AGTACATAAAAGACACATGC+GGG | + | chr2_3:9933976-9933995 | Msa0277400:five_prime_UTR | 35.0% | |
| TGAACAGAAACGAGATGATA+CGG | - | chr2_3:9934089-9934108 | None:intergenic | 35.0% | |
| CTATCAGAACAGAACAAACA+TGG | + | chr2_3:9934115-9934134 | Msa0277400:exon | 35.0% | |
| !! | CGTTTCAGTTTGTTGTAGTA+TGG | + | chr2_3:9934180-9934199 | Msa0277400:intron | 35.0% |
| AAAGGGAAATGAATGAAGGA+AGG | - | chr2_3:9934354-9934373 | None:intergenic | 35.0% | |
| !! | TTATGTTTCGCAGGTTGATT+TGG | + | chr2_3:9934838-9934857 | Msa0277400:intron | 35.0% |
| TATGGCTACTTATCAGTTAC+CGG | + | chr2_3:9934982-9935001 | Msa0277400:intron | 35.0% | |
| GAACTTCAGCAAATATACAC+CGG | - | chr2_3:9935004-9935023 | None:intergenic | 35.0% | |
| AAGTTAGTAGTTCCATCCAA+GGG | - | chr2_3:9935122-9935141 | None:intergenic | 35.0% | |
| AAAGTTAGTAGTTCCATCCA+AGG | - | chr2_3:9935123-9935142 | None:intergenic | 35.0% | |
| GAACTACTAACTTTGTGCAT+GGG | + | chr2_3:9935129-9935148 | Msa0277400:CDS | 35.0% | |
| ATTGGAAAAGTTCCAACAGT+CGG | + | chr2_3:9935272-9935291 | Msa0277400:CDS | 35.0% | |
| ATCCAATAATCAATGAGGTG+TGG | + | chr2_3:9935306-9935325 | Msa0277400:intron | 35.0% | |
| ! | TACCACACCTCATTGATTAT+TGG | - | chr2_3:9935311-9935330 | None:intergenic | 35.0% |
| !! | AAAAAGAAGCTTTGGAGCAA+TGG | - | chr2_3:9935425-9935444 | None:intergenic | 35.0% |
| ! | ATTGCTCCAAAGCTTCTTTT+TGG | + | chr2_3:9935424-9935443 | Msa0277400:intron | 35.0% |
| TTCAATAAGGATTATCGGCA+TGG | + | chr2_3:9935483-9935502 | Msa0277400:intron | 35.0% | |
| TTGAATGGGAACCCTATAAA+AGG | + | chr2_3:9935616-9935635 | Msa0277400:CDS | 35.0% | |
| GATCGAAAGATGAAAAACAG+AGG | - | chr2_3:9935647-9935666 | None:intergenic | 35.0% | |
| TGTGATGACACTGAAATTCA+AGG | - | chr2_3:9935711-9935730 | None:intergenic | 35.0% | |
| AGTGTCATCACAAACTGAAT+TGG | + | chr2_3:9935719-9935738 | Msa0277400:intron | 35.0% | |
| TTAGGTGTTAGTCCAAATAC+AGG | - | chr2_3:9935972-9935991 | None:intergenic | 35.0% | |
| CAGATTATGACAGTGTCATA+GGG | - | chr2_3:9936042-9936061 | None:intergenic | 35.0% | |
| TCAGATTATGACAGTGTCAT+AGG | - | chr2_3:9936043-9936062 | None:intergenic | 35.0% | |
| TGTTAGAATTTCTACACTCG+TGG | + | chr2_3:9936081-9936100 | Msa0277400:intron | 35.0% | |
| ATCAGCCACATAAACTTTGA+GGG | - | chr2_3:9936264-9936283 | None:intergenic | 35.0% | |
| TATCAGCCACATAAACTTTG+AGG | - | chr2_3:9936265-9936284 | None:intergenic | 35.0% | |
| !! | TGATCACGTTGTAACTTGTT+GGG | - | chr2_3:9936683-9936702 | None:intergenic | 35.0% |
| !! | TGGGGATAAACCTTTTAAGT+GGG | - | chr2_3:9936743-9936762 | None:intergenic | 35.0% |
| ! | ATGGGGATAAACCTTTTAAG+TGG | - | chr2_3:9936744-9936763 | None:intergenic | 35.0% |
| AATAGATCTCACCTGACATA+TGG | - | chr2_3:9937089-9937108 | None:intergenic | 35.0% | |
| GTGAGATCTATTAGAATGAG+CGG | + | chr2_3:9937097-9937116 | Msa0277400:CDS | 35.0% | |
| AATCTTTGTGGAATTGCATG+TGG | + | chr2_3:9937133-9937152 | Msa0277400:CDS | 35.0% | |
| GTGTTCTATGAAACTGGATT+TGG | + | chr2_3:9937166-9937185 | Msa0277400:CDS | 35.0% | |
| TTCTATGAAACTGGATTTGG+TGG | + | chr2_3:9937169-9937188 | Msa0277400:CDS | 35.0% | |
| ATATATTCGAAATGTACGGG+TGG | - | chr2_3:9937306-9937325 | None:intergenic | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | + | chr2_3:9937403-9937422 | Msa0277400:intron | 35.0% |
| AAGAATAAATAGGGGAGAGA+AGG | + | chr2_3:9937435-9937454 | Msa0277400:intron | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | + | chr2_3:9937436-9937455 | Msa0277400:intron | 35.0% | |
| ! | GAGCAATTTTCGAAATGTAC+GGG | - | chr2_3:9937708-9937727 | None:intergenic | 35.0% |
| ! | GGAGCAATTTTCGAAATGTA+CGG | - | chr2_3:9937709-9937728 | None:intergenic | 35.0% |
| !!! | CTTTTTCTGAAGTGTACATC+CGG | + | chr2_3:9937806-9937825 | Msa0277400:intron | 35.0% |
| !! | TGTACATCCGGAGTTATTTT+AGG | + | chr2_3:9937818-9937837 | Msa0277400:intron | 35.0% |
| !! | GTACATCCGGAGTTATTTTA+GGG | + | chr2_3:9937819-9937838 | Msa0277400:intron | 35.0% |
| AAAAATGGCCTTTGACCTAA+CGG | + | chr2_3:9937901-9937920 | Msa0277400:intron | 35.0% | |
| TAACATTTGCTTTAGCCTAG+TGG | + | chr2_3:9938057-9938076 | Msa0277400:intron | 35.0% | |
| ACGAAGCTTCATAGATATGT+TGG | + | chr2_3:9938420-9938439 | Msa0277400:intron | 35.0% | |
| CGAAGCTTCATAGATATGTT+GGG | + | chr2_3:9938421-9938440 | Msa0277400:intron | 35.0% | |
| !! | CTGATGTTTTTGTTTGCTTC+AGG | + | chr2_3:9938468-9938487 | Msa0277400:intron | 35.0% |
| AATAAAAGACGGAAGCTTTC+GGG | - | chr2_3:9938859-9938878 | None:intergenic | 35.0% | |
| GTACATAAAAGACACATGCG+GGG | + | chr2_3:9933977-9933996 | Msa0277400:five_prime_UTR | 40.0% | |
| GAACAGAAACGAGATGATAC+GGG | - | chr2_3:9934088-9934107 | None:intergenic | 40.0% | |
| ACAAACATGGCTGACAACAA+CGG | + | chr2_3:9934128-9934147 | Msa0277400:exon | 40.0% | |
| GGAAATGAATGAAGGAAGGA+AGG | - | chr2_3:9934350-9934369 | None:intergenic | 40.0% | |
| GGAGAAAGGGAAATGAATGA+AGG | - | chr2_3:9934358-9934377 | None:intergenic | 40.0% | |
| GTGATAGATGAAGGGAGAAA+GGG | - | chr2_3:9934371-9934390 | None:intergenic | 40.0% | |
| AGTGATAGATGAAGGGAGAA+AGG | - | chr2_3:9934372-9934391 | None:intergenic | 40.0% | |
| ATGTTCGACGTGCTTAGTTT+GGG | - | chr2_3:9934453-9934472 | None:intergenic | 40.0% | |
| TATGTTCGACGTGCTTAGTT+TGG | - | chr2_3:9934454-9934473 | None:intergenic | 40.0% | |
| ACTAAGCACGTCGAACATAA+AGG | + | chr2_3:9934455-9934474 | Msa0277400:CDS | 40.0% | |
| CTTGTTCTCTGTTCTTGCAA+AGG | + | chr2_3:9934697-9934716 | Msa0277400:intron | 40.0% | |
| ! | ACAGCTTTATCCCACTCATA+AGG | + | chr2_3:9934910-9934929 | Msa0277400:CDS | 40.0% |
| TCGGAATGAACCTTATGAGT+GGG | - | chr2_3:9934923-9934942 | None:intergenic | 40.0% | |
| ATCGGAATGAACCTTATGAG+TGG | - | chr2_3:9934924-9934943 | None:intergenic | 40.0% | |
| AACTTACAGATGATCCCACA+TGG | + | chr2_3:9935087-9935106 | Msa0277400:CDS | 40.0% | |
| AAGGGATCAACAATCCATGT+GGG | - | chr2_3:9935104-9935123 | None:intergenic | 40.0% | |
| GGAACTACTAACTTTGTGCA+TGG | + | chr2_3:9935128-9935147 | Msa0277400:CDS | 40.0% | |
| !! | GTCTCCATTGGTCTTACAAT+TGG | + | chr2_3:9935254-9935273 | Msa0277400:CDS | 40.0% |
| GCTATGGCTATATGATCAGA+AGG | - | chr2_3:9935397-9935416 | None:intergenic | 40.0% | |
| ! | GGATTATCGGCATGGAATTT+TGG | + | chr2_3:9935491-9935510 | Msa0277400:intron | 40.0% |
| !! | GGAAAGGTGCTTTCTTGAAT+GGG | + | chr2_3:9935602-9935621 | Msa0277400:CDS | 40.0% |
| ! | CAGAGGACACACCTTTTATA+GGG | - | chr2_3:9935630-9935649 | None:intergenic | 40.0% |
| ! | ACAGAGGACACACCTTTTAT+AGG | - | chr2_3:9935631-9935650 | None:intergenic | 40.0% |
| ACAGGTACATGATAAGGACA+GGG | - | chr2_3:9935850-9935869 | None:intergenic | 40.0% | |
| TACAGGTACATGATAAGGAC+AGG | - | chr2_3:9935851-9935870 | None:intergenic | 40.0% | |
| CATGTACCTGTATCAATGTG+TGG | + | chr2_3:9935859-9935878 | Msa0277400:intron | 40.0% | |
| GTCATTCCACACATTGATAC+AGG | - | chr2_3:9935868-9935887 | None:intergenic | 40.0% | |
| ! | GCTTGTTAGTCTCCTGTATT+TGG | + | chr2_3:9935957-9935976 | Msa0277400:intron | 40.0% |
| GAAATGAGATTCTTCAGAGC+AGG | - | chr2_3:9936219-9936238 | None:intergenic | 40.0% | |
| TTAGGGCAGACATGTTAGAT+TGG | + | chr2_3:9936380-9936399 | Msa0277400:intron | 40.0% | |
| CAGATAGCAATCAAGACAGA+AGG | - | chr2_3:9936408-9936427 | None:intergenic | 40.0% | |
| !! | ATCACGTTGTAACTTGTTGG+GGG | - | chr2_3:9936681-9936700 | None:intergenic | 40.0% |
| !! | GATCACGTTGTAACTTGTTG+GGG | - | chr2_3:9936682-9936701 | None:intergenic | 40.0% |
| ! | GTGATCACGTTGTAACTTGT+TGG | - | chr2_3:9936684-9936703 | None:intergenic | 40.0% |
| ! | ATGTATACTTGGTGGGGAAT+GGG | - | chr2_3:9936762-9936781 | None:intergenic | 40.0% |
| GCTTGGAATTCTAATTGGCA+TGG | + | chr2_3:9936819-9936838 | Msa0277400:intron | 40.0% | |
| !! | TTTTTCCCTTCTGAAAGAGC+AGG | + | chr2_3:9936920-9936939 | Msa0277400:intron | 40.0% |
| TCACCTGACATATGGAAACA+GGG | - | chr2_3:9937081-9937100 | None:intergenic | 40.0% | |
| CTGGATGTGTTCTATGAAAC+TGG | + | chr2_3:9937160-9937179 | Msa0277400:CDS | 40.0% | |
| TGCAGGAAATACTCATACCA+TGG | - | chr2_3:9937196-9937215 | None:intergenic | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | + | chr2_3:9937225-9937244 | Msa0277400:intron | 40.0% | |
| TGGCATTGTCGTTATGTTAC+TGG | + | chr2_3:9937225-9937244 | Msa0277400:intron | 40.0% | |
| ! | CAATTTTCGAAATGTACGGG+TGG | - | chr2_3:9937705-9937724 | None:intergenic | 40.0% |
| ! | TTGCTCCAGAAGTGTATTTC+CGG | + | chr2_3:9937722-9937741 | Msa0277400:intron | 40.0% |
| ATTGTTCGGAAAGACACATC+TGG | + | chr2_3:9937756-9937775 | Msa0277400:intron | 40.0% | |
| AGTCTTAACCGTTAGGTCAA+AGG | - | chr2_3:9937912-9937931 | None:intergenic | 40.0% | |
| !! | AGACCCCTGATTCGTTTTAA+AGG | + | chr2_3:9937934-9937953 | Msa0277400:intron | 40.0% |
| ATTTGCTTTAGCCTAGTGGT+TGG | + | chr2_3:9938061-9938080 | Msa0277400:intron | 40.0% | |
| !! | TAGCCTAGTGGTTGGTTTAT+TGG | + | chr2_3:9938069-9938088 | Msa0277400:intron | 40.0% |
| !! | AGCCTAGTGGTTGGTTTATT+GGG | + | chr2_3:9938070-9938089 | Msa0277400:intron | 40.0% |
| ATCCCAATAAACCAACCACT+AGG | - | chr2_3:9938075-9938094 | None:intergenic | 40.0% | |
| !! | TAGTGGTTGGTTTATTGGGA+TGG | + | chr2_3:9938074-9938093 | Msa0277400:intron | 40.0% |
| GAAAGAGAGACCATGTGATT+AGG | - | chr2_3:9938101-9938120 | None:intergenic | 40.0% | |
| !! | GTTTTTGTTTGCTTCAGGTC+TGG | + | chr2_3:9938473-9938492 | Msa0277400:intron | 40.0% |
| CAATTGCATCCTTCAAGAGA+GGG | - | chr2_3:9938541-9938560 | None:intergenic | 40.0% | |
| ACAATTGCATCCTTCAAGAG+AGG | - | chr2_3:9938542-9938561 | None:intergenic | 40.0% | |
| !! | GTTTTGTTGAGTGTGGTGAG+TGG | + | chr2_3:9933999-9934018 | Msa0277400:five_prime_UTR | 45.0% |
| TTAGTGCGTTAGTAGGCGAA+AGG | + | chr2_3:9934026-9934045 | Msa0277400:five_prime_UTR | 45.0% | |
| GAAACGAGATGATACGGGAA+AGG | - | chr2_3:9934083-9934102 | None:intergenic | 45.0% | |
| GCACGTCGAACATAAAGGAT+CGG | + | chr2_3:9934460-9934479 | Msa0277400:CDS | 45.0% | |
| !! | GAAGAAACCACAGCTGCTTT+TGG | + | chr2_3:9935056-9935075 | Msa0277400:CDS | 45.0% |
| TGTAGTTCCAAAAGCAGCTG+TGG | - | chr2_3:9935066-9935085 | None:intergenic | 45.0% | |
| CAAGGGATCAACAATCCATG+TGG | - | chr2_3:9935105-9935124 | None:intergenic | 45.0% | |
| ! | CACATGGATTGTTGATCCCT+TGG | + | chr2_3:9935103-9935122 | Msa0277400:CDS | 45.0% |
| TGGATTGTTGATCCCTTGGA+TGG | + | chr2_3:9935107-9935126 | Msa0277400:CDS | 45.0% | |
| CAATGGAGACACAAACGAAG+GGG | - | chr2_3:9935244-9935263 | None:intergenic | 45.0% | |
| CCAATGGAGACACAAACGAA+GGG | - | chr2_3:9935245-9935264 | None:intergenic | 45.0% | |
| ACCAATGGAGACACAAACGA+AGG | - | chr2_3:9935246-9935265 | None:intergenic | 45.0% | |
| ! | TTGTACACAACACCGACTGT+TGG | - | chr2_3:9935287-9935306 | None:intergenic | 45.0% |
| !! | AGAAGCTTTGGAGCAATGGT+TGG | - | chr2_3:9935421-9935440 | None:intergenic | 45.0% |
| ! | TAGCTTTTCACTGCAGTCCA+TGG | + | chr2_3:9935580-9935599 | Msa0277400:intron | 45.0% |
| ! | AGCTTTTCACTGCAGTCCAT+GGG | + | chr2_3:9935581-9935600 | Msa0277400:intron | 45.0% |
| !! | TCAAGAAAGCACCTTTCCCA+TGG | - | chr2_3:9935600-9935619 | None:intergenic | 45.0% |
| !! | GGGAAAGGTGCTTTCTTGAA+TGG | + | chr2_3:9935601-9935620 | Msa0277400:CDS | 45.0% |
| GAACTCTCTTCTTGCAACTG+AGG | + | chr2_3:9935743-9935762 | Msa0277400:CDS | 45.0% | |
| !! | TCACGTTGTAACTTGTTGGG+GGG | - | chr2_3:9936680-9936699 | None:intergenic | 45.0% |
| CAACGTGATCACTGATCAGT+TGG | + | chr2_3:9936692-9936711 | Msa0277400:intron | 45.0% | |
| ! | TGTATACTTGGTGGGGAATG+GGG | - | chr2_3:9936761-9936780 | None:intergenic | 45.0% |
| ! | CATGTATACTTGGTGGGGAA+TGG | - | chr2_3:9936763-9936782 | None:intergenic | 45.0% |
| CTACCCTGTTTCCATATGTC+AGG | + | chr2_3:9937075-9937094 | Msa0277400:intron | 45.0% | |
| CTCACCTGACATATGGAAAC+AGG | - | chr2_3:9937082-9937101 | None:intergenic | 45.0% | |
| ! | TCCTGTGCTCTGAATCTTTG+TGG | + | chr2_3:9937121-9937140 | Msa0277400:CDS | 45.0% |
| TCCACAAAGATTCAGAGCAC+AGG | - | chr2_3:9937125-9937144 | None:intergenic | 45.0% | |
| TGGAATTGCATGTGGAAGAC+TGG | + | chr2_3:9937141-9937160 | Msa0277400:CDS | 45.0% | |
| !! | AAACTGGATTTGGTGGTCCA+TGG | + | chr2_3:9937176-9937195 | Msa0277400:CDS | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | - | chr2_3:9937257-9937276 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | + | chr2_3:9937257-9937276 | Msa0277400:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | + | chr2_3:9937258-9937277 | Msa0277400:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | + | chr2_3:9937265-9937284 | Msa0277400:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | - | chr2_3:9937297-9937316 | None:intergenic | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | + | chr2_3:9937472-9937491 | Msa0277400:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | + | chr2_3:9937473-9937492 | Msa0277400:intron | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | + | chr2_3:9937491-9937510 | Msa0277400:intron | 45.0% |
| TGCTTTACTTGCCCAAAGGT+TGG | - | chr2_3:9937257-9937276 | None:intergenic | 45.0% | |
| ACCTTTGGGCAAGTAAAGCA+AGG | + | chr2_3:9937257-9937276 | Msa0277400:intron | 45.0% | |
| CCTTTGGGCAAGTAAAGCAA+GGG | + | chr2_3:9937258-9937277 | Msa0277400:intron | 45.0% | |
| GCAAGTAAAGCAAGGGCTTT+AGG | + | chr2_3:9937265-9937284 | Msa0277400:intron | 45.0% | |
| AAATGTACGGGTGGACAAAG+TGG | - | chr2_3:9937297-9937316 | None:intergenic | 45.0% | |
| ! | TCCAGAAGTGTATTTCCGGA+CGG | + | chr2_3:9937726-9937745 | Msa0277400:intron | 45.0% |
| ! | CGAACAATTTTTGTCCCGTC+CGG | - | chr2_3:9937744-9937763 | None:intergenic | 45.0% |
| CGGACGGGACAAAAATTGTT+CGG | + | chr2_3:9937742-9937761 | Msa0277400:intron | 45.0% | |
| GGTCTTGAGTCTTAACCGTT+AGG | - | chr2_3:9937919-9937938 | None:intergenic | 45.0% | |
| TTGGGATGGTCCTAATCACA+TGG | + | chr2_3:9938088-9938107 | Msa0277400:intron | 45.0% | |
| ATCACATGGTCTCTCTTTCC+AGG | + | chr2_3:9938102-9938121 | Msa0277400:intron | 45.0% | |
| TCACATGGTCTCTCTTTCCA+GGG | + | chr2_3:9938103-9938122 | Msa0277400:intron | 45.0% | |
| GCTGTCATTGTTAGAGAAGC+TGG | + | chr2_3:9938140-9938159 | Msa0277400:CDS | 45.0% | |
| GTCATTGTTAGAGAAGCTGG+AGG | + | chr2_3:9938143-9938162 | Msa0277400:CDS | 45.0% | |
| GGTTGGATGTACATGCATTG+TGG | + | chr2_3:9938337-9938356 | Msa0277400:intron | 45.0% | |
| TTTGTTTGCTTCAGGTCTGG+TGG | + | chr2_3:9938476-9938495 | Msa0277400:intron | 45.0% | |
| TGCTTCAAACCCTCTCTTGA+AGG | + | chr2_3:9938529-9938548 | Msa0277400:CDS | 45.0% | |
| CTTAGTGCATCAGCATTACG+TGG | + | chr2_3:9938777-9938796 | Msa0277400:three_prime_UTR | 45.0% | |
| !!! | ATGCGGGGTTTTGTTGAGTG+TGG | + | chr2_3:9933992-9934011 | Msa0277400:five_prime_UTR | 50.0% |
| TCGCCTACTAACGCACTAAC+CGG | - | chr2_3:9934025-9934044 | None:intergenic | 50.0% | |
| TGCGTTAGTAGGCGAAAGGT+AGG | + | chr2_3:9934030-9934049 | Msa0277400:five_prime_UTR | 50.0% | |
| TAGTAGGCGAAAGGTAGGAC+AGG | + | chr2_3:9934035-9934054 | Msa0277400:five_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_3:9934159-9934178 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_3:9934158-9934177 | None:intergenic | 50.0% | |
| CCCTTCGTTTGTGTCTCCAT+TGG | + | chr2_3:9935242-9935261 | Msa0277400:CDS | 50.0% | |
| TGGAGCAATGGTTGGAGCTA+TGG | - | chr2_3:9935413-9935432 | None:intergenic | 50.0% | |
| TTCACTGCAGTCCATGGGAA+AGG | + | chr2_3:9935586-9935605 | Msa0277400:CDS | 50.0% | |
| TCCAGCCTGCTCTTTCAGAA+GGG | - | chr2_3:9936928-9936947 | None:intergenic | 50.0% | |
| TTCCAGCCTGCTCTTTCAGA+AGG | - | chr2_3:9936929-9936948 | None:intergenic | 50.0% | |
| GGCTGGAACAAAACGTGACA+AGG | + | chr2_3:9936941-9936960 | Msa0277400:intron | 50.0% | |
| CACTAGATGCGACCACCAAT+AGG | + | chr2_3:9936967-9936986 | Msa0277400:CDS | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | - | chr2_3:9937251-9937270 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | - | chr2_3:9937252-9937271 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | - | chr2_3:9937261-9937280 | None:intergenic | 50.0% | |
| GGGAGAGAAGGGAAGATTGA+GGG | + | chr2_3:9937447-9937466 | Msa0277400:intron | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | + | chr2_3:9937448-9937467 | Msa0277400:intron | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | + | chr2_3:9937468-9937487 | Msa0277400:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | + | chr2_3:9937474-9937493 | Msa0277400:intron | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | + | chr2_3:9937490-9937509 | Msa0277400:intron | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | - | chr2_3:9937500-9937519 | None:intergenic | 50.0% | |
| ACTTGCCCAAAGGTTGGACA+GGG | - | chr2_3:9937251-9937270 | None:intergenic | 50.0% | |
| TACTTGCCCAAAGGTTGGAC+AGG | - | chr2_3:9937252-9937271 | None:intergenic | 50.0% | |
| CCCTTGCTTTACTTGCCCAA+AGG | - | chr2_3:9937261-9937280 | None:intergenic | 50.0% | |
| ! | CCAGAAGTGTATTTCCGGAC+GGG | + | chr2_3:9937727-9937746 | Msa0277400:intron | 50.0% |
| CCTCGGCCCTAAAATAACTC+CGG | - | chr2_3:9937828-9937847 | None:intergenic | 50.0% | |
| !!! | CGGAGTTATTTTAGGGCCGA+GGG | + | chr2_3:9937826-9937845 | Msa0277400:intron | 50.0% |
| TGTTGAGTGTGGTGAGTGGC+CGG | + | chr2_3:9934003-9934022 | Msa0277400:five_prime_UTR | 55.0% | |
| TGGCCGGTTAGTGCGTTAGT+AGG | + | chr2_3:9934019-9934038 | Msa0277400:five_prime_UTR | 55.0% | |
| AGGCGAAAGGTAGGACAGGA+AGG | + | chr2_3:9934039-9934058 | Msa0277400:five_prime_UTR | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+TGG | - | chr2_3:9934156-9934175 | None:intergenic | 55.0% | |
| GTCGACGCTGCTCATAAAGC+TGG | + | chr2_3:9934291-9934310 | Msa0277400:CDS | 55.0% | |
| ! | TCCCTTCTGAAAGAGCAGGC+TGG | + | chr2_3:9936924-9936943 | Msa0277400:intron | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | + | chr2_3:9937242-9937261 | Msa0277400:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | + | chr2_3:9937243-9937262 | Msa0277400:intron | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+AGG | + | chr2_3:9937446-9937465 | Msa0277400:intron | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | + | chr2_3:9937457-9937476 | Msa0277400:intron | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | + | chr2_3:9937467-9937486 | Msa0277400:intron | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | + | chr2_3:9937483-9937502 | Msa0277400:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | + | chr2_3:9937494-9937513 | Msa0277400:intron | 55.0% |
| TACTGGCCCTGTCCAACCTT+TGG | + | chr2_3:9937242-9937261 | Msa0277400:intron | 55.0% | |
| ACTGGCCCTGTCCAACCTTT+GGG | + | chr2_3:9937243-9937262 | Msa0277400:intron | 55.0% | |
| CCCGTCCGGAAATACACTTC+TGG | - | chr2_3:9937730-9937749 | None:intergenic | 55.0% | |
| !!! | CCGGAGTTATTTTAGGGCCG+AGG | + | chr2_3:9937825-9937844 | Msa0277400:intron | 55.0% |
| GGTCTCTCTTTCCAGGGATG+TGG | + | chr2_3:9938109-9938128 | Msa0277400:intron | 55.0% | |
| TCTCTTTCCAGGGATGTGGC+AGG | + | chr2_3:9938113-9938132 | Msa0277400:intron | 55.0% | |
| CTTTCCAGGGATGTGGCAGG+TGG | + | chr2_3:9938116-9938135 | Msa0277400:intron | 60.0% | |
| !! | CAGCGTCGACAGCAGATGCG+AGG | - | chr2_3:9934281-9934300 | None:intergenic | 65.0% |
| AGCACCACCTGCCACATCCC+TGG | - | chr2_3:9938123-9938142 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9933974 | 9938887 | 9933974 | ID=Msa0277400;Name=Msa0277400 |
| chr2_3 | mRNA | 9933974 | 9938887 | 9933974 | ID=Msa0277400-mRNA-1;Parent=Msa0277400;Name=Msa0277400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=160|1|1|1|1|1|12|301|271 |
| chr2_3 | exon | 9933974 | 9934149 | 9933974 | ID=Msa0277400-mRNA-1:exon:4424;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9934262 | 9934317 | 9934262 | ID=Msa0277400-mRNA-1:exon:4425;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9934431 | 9934481 | 9934431 | ID=Msa0277400-mRNA-1:exon:4426;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9934851 | 9934931 | 9934851 | ID=Msa0277400-mRNA-1:exon:4427;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9935047 | 9935150 | 9935047 | ID=Msa0277400-mRNA-1:exon:4428;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9935238 | 9935322 | 9935238 | ID=Msa0277400-mRNA-1:exon:4429;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9935583 | 9935637 | 9935583 | ID=Msa0277400-mRNA-1:exon:4430;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9935721 | 9935764 | 9935721 | ID=Msa0277400-mRNA-1:exon:4431;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9936942 | 9937010 | 9936942 | ID=Msa0277400-mRNA-1:exon:4432;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9937097 | 9937197 | 9937097 | ID=Msa0277400-mRNA-1:exon:4433;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9938124 | 9938180 | 9938124 | ID=Msa0277400-mRNA-1:exon:4434;Parent=Msa0277400-mRNA-1 |
| chr2_3 | exon | 9938490 | 9938887 | 9938490 | ID=Msa0277400-mRNA-1:exon:4435;Parent=Msa0277400-mRNA-1 |
| chr2_3 | five_prime_UTR | 9933974 | 9934133 | 9933974 | ID=Msa0277400-mRNA-1:five_prime_utr;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9934134 | 9934149 | 9934134 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9934262 | 9934317 | 9934262 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9934431 | 9934481 | 9934431 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9934851 | 9934931 | 9934851 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9935047 | 9935150 | 9935047 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9935238 | 9935322 | 9935238 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9935583 | 9935637 | 9935583 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9935721 | 9935764 | 9935721 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9936942 | 9937010 | 9936942 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9937097 | 9937197 | 9937097 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9938124 | 9938180 | 9938124 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | CDS | 9938490 | 9938586 | 9938490 | ID=Msa0277400-mRNA-1:cds;Parent=Msa0277400-mRNA-1 |
| chr2_3 | three_prime_UTR | 9938587 | 9938887 | 9938587 | ID=Msa0277400-mRNA-1:three_prime_utr;Parent=Msa0277400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
