Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240430 | XP_024631455.1 | 98.718 | 312 | 4 | 0 | 1 | 312 | 1 | 312 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240430 | Q2HSS2 | 98.718 | 312 | 4 | 0 | 1 | 312 | 1 | 312 | 0.0 | 628 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138410 | Msa0240430 | 0.964250 | 4.317377e-123 | -8.615850e-47 |
| Msa0198170 | Msa0240430 | 0.931858 | 2.024842e-94 | -8.615850e-47 |
| Msa0198190 | Msa0240430 | 0.882145 | 1.331329e-70 | -8.615850e-47 |
| Msa0240430 | Msa0831430 | 0.800104 | 1.685568e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240430 | MtrunA17_Chr2g0291431 | 98.718 | 312 | 4 | 0 | 1 | 312 | 1 | 312 | 0.0 | 628 |
| Msa0240430 | MtrunA17_Chr5g0398451 | 43.644 | 236 | 133 | 0 | 56 | 291 | 77 | 312 | 2.31e-75 | 233 |
| Msa0240430 | MtrunA17_Chr4g0056711 | 43.704 | 270 | 149 | 3 | 25 | 291 | 38 | 307 | 4.41e-73 | 228 |
| Msa0240430 | MtrunA17_Chr3g0109441 | 90.278 | 72 | 7 | 0 | 176 | 247 | 1 | 72 | 2.14e-41 | 138 |
| Msa0240430 | MtrunA17_Chr4g0065691 | 27.391 | 230 | 159 | 6 | 84 | 311 | 31 | 254 | 1.78e-16 | 78.2 |
| Msa0240430 | MtrunA17_Chr4g0014341 | 34.074 | 135 | 83 | 3 | 106 | 238 | 149 | 279 | 9.83e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240430 | AT2G02370.2 | 64.667 | 300 | 105 | 1 | 11 | 310 | 10 | 308 | 5.41e-142 | 404 |
| Msa0240430 | AT2G02370.1 | 64.667 | 300 | 105 | 1 | 11 | 310 | 10 | 308 | 5.41e-142 | 404 |
| Msa0240430 | AT2G02370.3 | 64.667 | 300 | 105 | 1 | 11 | 310 | 10 | 308 | 5.41e-142 | 404 |
| Msa0240430 | AT1G12450.1 | 41.786 | 280 | 162 | 1 | 12 | 291 | 15 | 293 | 2.64e-76 | 236 |
| Msa0240430 | AT4G12000.1 | 39.649 | 285 | 168 | 3 | 9 | 291 | 18 | 300 | 1.10e-69 | 219 |
| Msa0240430 | AT4G12000.2 | 39.649 | 285 | 168 | 3 | 9 | 291 | 18 | 300 | 1.10e-69 | 219 |
| Msa0240430 | AT4G12000.3 | 39.649 | 285 | 168 | 3 | 9 | 291 | 18 | 300 | 1.10e-69 | 219 |
| Msa0240430 | AT4G22850.1 | 43.154 | 241 | 136 | 1 | 52 | 291 | 51 | 291 | 4.32e-69 | 217 |
| Msa0240430 | AT4G22850.2 | 45.050 | 202 | 111 | 0 | 52 | 253 | 51 | 252 | 2.74e-60 | 194 |
| Msa0240430 | AT1G03260.1 | 27.624 | 181 | 123 | 4 | 128 | 305 | 76 | 251 | 1.00e-15 | 76.3 |
| Msa0240430 | AT5G19070.1 | 27.068 | 266 | 179 | 7 | 53 | 309 | 2 | 261 | 1.02e-12 | 67.8 |
| Msa0240430 | AT1G22850.2 | 31.915 | 141 | 90 | 3 | 106 | 244 | 155 | 291 | 3.70e-12 | 66.2 |
| Msa0240430 | AT1G22850.1 | 31.915 | 141 | 90 | 3 | 106 | 244 | 155 | 291 | 4.38e-12 | 66.2 |
Find 137 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGCTGCCTCTGTTTC+TGG | 0.127067 | 2_2:+15397553 | Msa0240430:CDS |
| GCCTAATCATTGCAGCATTC+TGG | 0.175711 | 2_2:-15396668 | None:intergenic |
| AATTACAAAGGGTTCAAAAT+TGG | 0.209973 | 2_2:-15397710 | None:intergenic |
| GGCCCTTCCATGTGGTTGGC+TGG | 0.261736 | 2_2:+15396397 | Msa0240430:CDS |
| ACACTAATGTCATAATAAAT+TGG | 0.290695 | 2_2:-15397637 | None:intergenic |
| GCTTCACTGTTTATGCAAAA+AGG | 0.293092 | 2_2:+15397497 | Msa0240430:CDS |
| AACCCTTGGTTCATCGGATA+TGG | 0.298073 | 2_2:-15395230 | None:intergenic |
| CCTTGGCTTTGTTATAATAA+TGG | 0.304861 | 2_2:+15396438 | Msa0240430:CDS |
| TTTGAACCCTTTGTAATTAC+CGG | 0.311140 | 2_2:+15397715 | Msa0240430:three_prime_UTR |
| AAATCACTGGTCATCATGTT+AGG | 0.313901 | 2_2:+15395182 | Msa0240430:CDS |
| AATTAATAATACTGGAAATA+AGG | 0.316723 | 2_2:-15396368 | None:intergenic |
| GGTGGATGAAAGTCTCTATA+TGG | 0.320063 | 2_2:+15395308 | Msa0240430:CDS |
| TTATGTATCTAACTAATATC+TGG | 0.340143 | 2_2:+15397666 | Msa0240430:three_prime_UTR |
| TTTCACTTCTTCTAGTCAAA+TGG | 0.349293 | 2_2:+15395350 | Msa0240430:CDS |
| ATTACAAAGGGTTCAAAATT+GGG | 0.357671 | 2_2:-15397709 | None:intergenic |
| CCTAATCATTGCAGCATTCT+GGG | 0.361713 | 2_2:-15396667 | None:intergenic |
| ATGGTCCTCCCTTACCTGAT+TGG | 0.362401 | 2_2:+15396478 | Msa0240430:CDS |
| CCGGAAGGAATTAATAATAC+TGG | 0.368326 | 2_2:-15396376 | None:intergenic |
| AGTTTGGCTGATGCACAGTA+TGG | 0.369283 | 2_2:+15397400 | Msa0240430:CDS |
| ATTGCCGTTATTACCATTGT+TGG | 0.378829 | 2_2:+15397475 | Msa0240430:CDS |
| CCAGTATTATTAATTCCTTC+CGG | 0.378920 | 2_2:+15396376 | Msa0240430:CDS |
| GGCTTGCTGGGGAAGGGAGC+TGG | 0.381729 | 2_2:+15396688 | Msa0240430:CDS |
| TTCACTTCTTCTAGTCAAAT+GGG | 0.394207 | 2_2:+15395351 | Msa0240430:CDS |
| AACAGAGGCAGCTTCTTCAT+TGG | 0.399823 | 2_2:-15397548 | None:intergenic |
| TTCCGGCCCTTCCATGTGGT+TGG | 0.403896 | 2_2:+15396393 | Msa0240430:CDS |
| TCCAACTCCCTTGACGGCTC+TGG | 0.403925 | 2_2:-15395151 | None:intergenic |
| TAGATGTAGATAAAAGCTTC+TGG | 0.404507 | 2_2:-15396840 | None:intergenic |
| TTCAGCAATGGTTAGAGAAA+TGG | 0.404756 | 2_2:+15396643 | Msa0240430:intron |
| TGGTAGATTGATAAAGAGTT+TGG | 0.407618 | 2_2:+15397384 | Msa0240430:CDS |
| CATCCCACATATGCTGATTC+CGG | 0.410533 | 2_2:-15397734 | None:intergenic |
| CCTTGTACTCGTTGCTTCAC+TGG | 0.417197 | 2_2:+15396345 | Msa0240430:CDS |
| TAGTGACAGATATGAAGTTT+TGG | 0.426906 | 2_2:+15396784 | Msa0240430:CDS |
| ATCTAACTAATATCTGGTTT+AGG | 0.428522 | 2_2:+15397672 | Msa0240430:three_prime_UTR |
| GGCTTTGTTATAATAATGGT+TGG | 0.430539 | 2_2:+15396442 | Msa0240430:CDS |
| GCTGCAATGATTAGGCTTGC+TGG | 0.438803 | 2_2:+15396675 | Msa0240430:CDS |
| AAGAAGCTGCCTCTGTTTCT+GGG | 0.441331 | 2_2:+15397554 | Msa0240430:CDS |
| ATGTAAGACCTTTCATTTCA+AGG | 0.442413 | 2_2:-15397607 | None:intergenic |
| TGTAAGACCTTTCATTTCAA+GGG | 0.445718 | 2_2:-15397606 | None:intergenic |
| CTGCAATGATTAGGCTTGCT+GGG | 0.453237 | 2_2:+15396676 | Msa0240430:CDS |
| AGTTTCTCCAACTCCCTTGA+CGG | 0.459269 | 2_2:-15395157 | None:intergenic |
| AGCCAACCACATGGAAGGGC+CGG | 0.460238 | 2_2:-15396395 | None:intergenic |
| GAGTGGGAAGCAACTGCCTT+TGG | 0.464665 | 2_2:+15396307 | Msa0240430:CDS |
| TAAAATGACTTACATGAATA+CGG | 0.467699 | 2_2:-15396516 | None:intergenic |
| CCCAGAATGCTGCAATGATT+AGG | 0.468506 | 2_2:+15396667 | Msa0240430:CDS |
| GTGGATGAAAGTCTCTATAT+GGG | 0.472228 | 2_2:+15395309 | Msa0240430:CDS |
| GTTGCTTCCCACTCCATCAC+TGG | 0.474508 | 2_2:-15396298 | None:intergenic |
| TTGAATATAGTGTAGGGAAA+AGG | 0.474878 | 2_2:-15396750 | None:intergenic |
| GCTTTGTTATAATAATGGTT+GGG | 0.475467 | 2_2:+15396443 | Msa0240430:CDS |
| TTCAACAACCCTTGGTTCAT+CGG | 0.477195 | 2_2:-15395236 | None:intergenic |
| CTGATTCCGGTAATTACAAA+GGG | 0.481298 | 2_2:-15397721 | None:intergenic |
| CCAGTGAAGCAACGAGTACA+AGG | 0.481760 | 2_2:-15396345 | None:intergenic |
| CACGGAACTTAAGTCCAATC+AGG | 0.482245 | 2_2:-15396492 | None:intergenic |
| AACTTAAGTCCAATCAGGTA+AGG | 0.484935 | 2_2:-15396487 | None:intergenic |
| GCCCTTCCATGTGGTTGGCT+GGG | 0.488079 | 2_2:+15396398 | Msa0240430:CDS |
| GTAATTCTTGATTCAGCTTG+AGG | 0.488257 | 2_2:-15395274 | None:intergenic |
| ATAATGGTTGGGACAACCAT+TGG | 0.489908 | 2_2:+15396454 | Msa0240430:CDS |
| GCTTTCAATAAGTTCAAAAG+AGG | 0.490722 | 2_2:+15394010 | Msa0240430:five_prime_UTR |
| AACTTACCAGGAAGAAGAAA+AGG | 0.490862 | 2_2:-15394276 | None:intergenic |
| TGGATAATTATTAATTGCAT+AGG | 0.493560 | 2_2:-15397803 | None:intergenic |
| ACCAGAGCCGTCAAGGGAGT+TGG | 0.495487 | 2_2:+15395150 | Msa0240430:CDS |
| TGCTACTGATCCACAAAAGT+AGG | 0.496974 | 2_2:-15396808 | None:intergenic |
| AATCACTGGTCATCATGTTA+GGG | 0.497053 | 2_2:+15395183 | Msa0240430:CDS |
| ATTTCAGCTTCAACAACCCT+TGG | 0.497272 | 2_2:-15395244 | None:intergenic |
| ACGAGTACAAGGGCGAGAAC+TGG | 0.500813 | 2_2:-15396334 | None:intergenic |
| ATGATTAGGCTTGCTGGGGA+AGG | 0.501695 | 2_2:+15396681 | Msa0240430:CDS |
| ATTACCGGAATCAGCATATG+TGG | 0.502349 | 2_2:+15397730 | Msa0240430:three_prime_UTR |
| GCGACCGCCGTGTACGGTGG+TGG | 0.506310 | 2_2:-15394121 | None:intergenic |
| GCCGTGTACGGTGGTGGAGT+TGG | 0.506342 | 2_2:-15394115 | None:intergenic |
| TAATGGTTGGGACAACCATT+GGG | 0.508872 | 2_2:+15396455 | Msa0240430:CDS |
| GAGGCGGCGACCGCCGTGTA+CGG | 0.512585 | 2_2:-15394127 | None:intergenic |
| GCATAATTGAATATAGTGTA+GGG | 0.517652 | 2_2:-15396756 | None:intergenic |
| CAGAGAGAAACGAACGGTAG+AGG | 0.518077 | 2_2:-15394198 | None:intergenic |
| TTCTTTATCCAGTGATGGAG+TGG | 0.528968 | 2_2:+15396290 | Msa0240430:CDS |
| TTGTGGATCAGTAGCAGGAA+TGG | 0.529813 | 2_2:+15396815 | Msa0240430:CDS |
| GAATTACATCTTTCAAGTGG+TGG | 0.533418 | 2_2:+15395290 | Msa0240430:CDS |
| TGATGACACCAGAGCCGTCA+AGG | 0.538710 | 2_2:+15395143 | Msa0240430:CDS |
| GAAGCCAACAATGGTAATAA+CGG | 0.542235 | 2_2:-15397479 | None:intergenic |
| TGCTAGTCTTGAGATGAAGA+AGG | 0.542284 | 2_2:+15397579 | Msa0240430:CDS |
| ATCCCAGCCAACCACATGGA+AGG | 0.542750 | 2_2:-15396400 | None:intergenic |
| TTAGTTAAGCTTTCTCTGAA+CGG | 0.544557 | 2_2:-15394173 | None:intergenic |
| CGGCGGTCGCCGCCTCACTC+CGG | 0.545444 | 2_2:+15394134 | Msa0240430:five_prime_UTR |
| GGCGAGAACTGGTCGGCCAA+AGG | 0.547361 | 2_2:-15396323 | None:intergenic |
| GCTGATTCCGGTAATTACAA+AGG | 0.550649 | 2_2:-15397722 | None:intergenic |
| TCCCAGCCAACCACATGGAA+GGG | 0.555362 | 2_2:-15396399 | None:intergenic |
| CCGCCTCACTCCGGTCACCT+AGG | 0.557116 | 2_2:+15394143 | Msa0240430:five_prime_UTR |
| TTGGAGAAACTTGAAATCAC+TGG | 0.559246 | 2_2:+15395169 | Msa0240430:CDS |
| TCCAACTCCACCACCGTACA+CGG | 0.560479 | 2_2:+15394114 | Msa0240430:five_prime_UTR |
| AGGTTTCCCCTTGAAATGAA+AGG | 0.560851 | 2_2:+15397599 | Msa0240430:exon |
| GTAGGTTCTTTATCCAGTGA+TGG | 0.563474 | 2_2:+15396285 | Msa0240430:intron |
| TGATTAGGCTTGCTGGGGAA+GGG | 0.564478 | 2_2:+15396682 | Msa0240430:CDS |
| CTGGTTTCATCAATTTCAAG+TGG | 0.564535 | 2_2:+15396707 | Msa0240430:CDS |
| CGGAATCAGCATATGTGGGA+TGG | 0.568940 | 2_2:+15397735 | Msa0240430:three_prime_UTR |
| AGCATAATTGAATATAGTGT+AGG | 0.570574 | 2_2:-15396757 | None:intergenic |
| TAATAAACTCAAAATAGAAG+AGG | 0.577914 | 2_2:+15397525 | Msa0240430:CDS |
| GTAAGACCTTTCATTTCAAG+GGG | 0.580961 | 2_2:-15397605 | None:intergenic |
| GCTACTGATCCACAAAAGTA+GGG | 0.584812 | 2_2:-15396807 | None:intergenic |
| GTTTGGCTGATGCACAGTAT+GGG | 0.587091 | 2_2:+15397401 | Msa0240430:CDS |
| GCGGCGACCGCCGTGTACGG+TGG | 0.588160 | 2_2:-15394124 | None:intergenic |
| CTCTGAACGGAGCGAAACCT+AGG | 0.588419 | 2_2:-15394160 | None:intergenic |
| TCTTTATCCAGTGATGGAGT+GGG | 0.589778 | 2_2:+15396291 | Msa0240430:CDS |
| TGCCATATCCGATGAACCAA+GGG | 0.592080 | 2_2:+15395228 | Msa0240430:CDS |
| CAAGAATTACATCTTTCAAG+TGG | 0.599182 | 2_2:+15395287 | Msa0240430:CDS |
| GACTTACATGAATACGGTCA+CGG | 0.599475 | 2_2:-15396510 | None:intergenic |
| CGGAGCGAAACCTAGGTGAC+CGG | 0.603246 | 2_2:-15394153 | None:intergenic |
| TTCCTTCCGGCCCTTCCATG+TGG | 0.604727 | 2_2:+15396389 | Msa0240430:CDS |
| AGGGTTCAAAATTGGGAGAG+AGG | 0.613044 | 2_2:-15397702 | None:intergenic |
| TCACTTCTTCTAGTCAAATG+GGG | 0.613697 | 2_2:+15395352 | Msa0240430:CDS |
| AACCACATGGAAGGGCCGGA+AGG | 0.615107 | 2_2:-15396391 | None:intergenic |
| ACTTAAGTCCAATCAGGTAA+GGG | 0.618923 | 2_2:-15396486 | None:intergenic |
| GATGACACCAGAGCCGTCAA+GGG | 0.622079 | 2_2:+15395144 | Msa0240430:CDS |
| AAACCTAGGTGACCGGAGTG+AGG | 0.622170 | 2_2:-15394146 | None:intergenic |
| ACTAGCATTCCCAGAAACAG+AGG | 0.622994 | 2_2:-15397563 | None:intergenic |
| TGGCTGATGCACAGTATGGG+AGG | 0.625311 | 2_2:+15397404 | Msa0240430:CDS |
| CCTAGGTGACCGGAGTGAGG+CGG | 0.626515 | 2_2:-15394143 | None:intergenic |
| AATCATCCCAGCCAACCACA+TGG | 0.628943 | 2_2:-15396404 | None:intergenic |
| TTGCCATATCCGATGAACCA+AGG | 0.632917 | 2_2:+15395227 | Msa0240430:CDS |
| CGATTTCCACTGTGGTCATG+TGG | 0.634060 | 2_2:-15397429 | None:intergenic |
| CTAATCATTGCAGCATTCTG+GGG | 0.635065 | 2_2:-15396666 | None:intergenic |
| GGTTGGGACAACCATTGGGA+TGG | 0.637137 | 2_2:+15396459 | Msa0240430:CDS |
| ATCACTGGTCATCATGTTAG+GGG | 0.642390 | 2_2:+15395184 | Msa0240430:CDS |
| TTACCGGAATCAGCATATGT+GGG | 0.650553 | 2_2:+15397731 | Msa0240430:three_prime_UTR |
| GTAAGGGAGGACCATCCCAA+TGG | 0.657572 | 2_2:-15396470 | None:intergenic |
| TAAGTCCAATCAGGTAAGGG+AGG | 0.662695 | 2_2:-15396483 | None:intergenic |
| GTTGTATACGATTTCCACTG+TGG | 0.663400 | 2_2:-15397437 | None:intergenic |
| ATAAACAGTGAAGCCAACAA+TGG | 0.664914 | 2_2:-15397488 | None:intergenic |
| TGTCATCATTGAGATGCCAG+AGG | 0.674381 | 2_2:-15395128 | None:intergenic |
| TGCAATGATTAGGCTTGCTG+GGG | 0.676509 | 2_2:+15396677 | Msa0240430:CDS |
| TGGATGAAAGTCTCTATATG+GGG | 0.676560 | 2_2:+15395310 | Msa0240430:CDS |
| GTCATCATTGAGATGCCAGA+GGG | 0.677520 | 2_2:-15395127 | None:intergenic |
| TCACTGGTCATCATGTTAGG+GGG | 0.683003 | 2_2:+15395185 | Msa0240430:CDS |
| CCATTATTATAACAAAGCCA+AGG | 0.686194 | 2_2:-15396438 | None:intergenic |
| GTACAAGGGCGAGAACTGGT+CGG | 0.687427 | 2_2:-15396330 | None:intergenic |
| CAGTGAAGCAACGAGTACAA+GGG | 0.688514 | 2_2:-15396344 | None:intergenic |
| AACTCCACCACCGTACACGG+CGG | 0.724025 | 2_2:+15394117 | Msa0240430:five_prime_UTR |
| GAGGCACCACATGACCACAG+TGG | 0.767959 | 2_2:+15397423 | Msa0240430:CDS |
| CAGCTGCAGAGAGAAACGAA+CGG | 0.779858 | 2_2:-15394204 | None:intergenic |
| AACAGAAGAACACTTCAACG+CGG | 0.790889 | 2_2:-15394074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAACACAATAAAAAATT+GGG | - | chr2_2:15394620-15394639 | None:intergenic | 10.0% |
| !! | ATATAAACACAATAAAAAAT+TGG | - | chr2_2:15394621-15394640 | None:intergenic | 10.0% |
| !! | TAAAAATTCAAAAAATTTAG+AGG | - | chr2_2:15396567-15396586 | None:intergenic | 10.0% |
| !!! | TTAATCTTTTTATTAATAGA+TGG | + | chr2_2:15397315-15397334 | Msa0240430:intron | 10.0% |
| !!! | TCATTAAATTAGTTCAATTT+TGG | + | chr2_2:15394501-15394520 | Msa0240430:intron | 15.0% |
| !! | ATAAACACAATAAAAAATTG+GGG | - | chr2_2:15394619-15394638 | None:intergenic | 15.0% |
| !!! | GATAAATTATTTTTTGATTG+TGG | + | chr2_2:15394993-15395012 | Msa0240430:intron | 15.0% |
| !!! | CTTTTGTGATAATAAAATAT+TGG | - | chr2_2:15395592-15395611 | None:intergenic | 15.0% |
| !!! | CAATATTTTATTATCACAAA+AGG | + | chr2_2:15395590-15395609 | Msa0240430:intron | 15.0% |
| !! | AATTAATAATACTGGAAATA+AGG | - | chr2_2:15396371-15396390 | None:intergenic | 15.0% |
| !! | GTTAAAAATATTCTCAAATA+AGG | - | chr2_2:15396971-15396990 | None:intergenic | 15.0% |
| !! | ATAATTGTGTTAATTTCATT+TGG | - | chr2_2:15397050-15397069 | None:intergenic | 15.0% |
| !!! | ACTTTTGTTACTTTATTTTT+TGG | + | chr2_2:15397270-15397289 | Msa0240430:intron | 15.0% |
| !!! | GTTTTTCTTTCATTAATTGA+AGG | + | chr2_2:15394379-15394398 | Msa0240430:intron | 20.0% |
| !!! | TAAAGTTTTTCTTTTCTAAG+GGG | - | chr2_2:15394547-15394566 | None:intergenic | 20.0% |
| !!! | GTAAAGTTTTTCTTTTCTAA+GGG | - | chr2_2:15394548-15394567 | None:intergenic | 20.0% |
| !! | TTGTGTTTATATGAATTGTT+TGG | + | chr2_2:15394629-15394648 | Msa0240430:intron | 20.0% |
| !! | AAATTGAAAGTTATGAATGT+GGG | + | chr2_2:15394658-15394677 | Msa0240430:intron | 20.0% |
| !! | CAAGAATTTGTGTATAAAAA+TGG | + | chr2_2:15394800-15394819 | Msa0240430:intron | 20.0% |
| !! | AATTTGTGTATAAAAATGGA+GGG | + | chr2_2:15394804-15394823 | Msa0240430:intron | 20.0% |
| !! | TTTAATCGTTGAAGAATATT+AGG | + | chr2_2:15395746-15395765 | Msa0240430:intron | 20.0% |
| !! | TTAATCGTTGAAGAATATTA+GGG | + | chr2_2:15395747-15395766 | Msa0240430:intron | 20.0% |
| !! | TATGTTTCATCACTTTATAT+GGG | - | chr2_2:15395908-15395927 | None:intergenic | 20.0% |
| !! | CTATGTAATGTAATGTAATA+AGG | + | chr2_2:15396093-15396112 | Msa0240430:intron | 20.0% |
| !! | TGTAACCAAGAAAAAAAAAA+GGG | - | chr2_2:15396167-15396186 | None:intergenic | 20.0% |
| !! | TATGTTAAATAAACTTGAAG+AGG | + | chr2_2:15396229-15396248 | Msa0240430:intron | 20.0% |
| !! | TAAAATGACTTACATGAATA+CGG | - | chr2_2:15396519-15396538 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGATTTACATG+AGG | - | chr2_2:15396936-15396955 | None:intergenic | 20.0% |
| !! | AACCATAGAAAATATTAGAA+TGG | - | chr2_2:15397135-15397154 | None:intergenic | 20.0% |
| !!! | ATTCTAATATTTTCTATGGT+TGG | + | chr2_2:15397134-15397153 | Msa0240430:intron | 20.0% |
| !! | TCTCATATTCATATATATTG+TGG | - | chr2_2:15397202-15397221 | None:intergenic | 20.0% |
| !! | CCATTAACATATAAGAAAAA+AGG | - | chr2_2:15397350-15397369 | None:intergenic | 20.0% |
| !!! | CCTTTTTTCTTATATGTTAA+TGG | + | chr2_2:15397347-15397366 | Msa0240430:intron | 20.0% |
| !! | TAATAAACTCAAAATAGAAG+AGG | + | chr2_2:15397525-15397544 | Msa0240430:CDS | 20.0% |
| !! | ACACTAATGTCATAATAAAT+TGG | - | chr2_2:15397640-15397659 | None:intergenic | 20.0% |
| !! | TTATGTATCTAACTAATATC+TGG | + | chr2_2:15397666-15397685 | Msa0240430:three_prime_UTR | 20.0% |
| !! | TGGATAATTATTAATTGCAT+AGG | - | chr2_2:15397806-15397825 | None:intergenic | 20.0% |
| ! | TAGAAATTATGAAACTTACC+AGG | - | chr2_2:15394291-15394310 | None:intergenic | 25.0% |
| !!! | TAATTGAAGGCATTGAATAT+TGG | + | chr2_2:15394392-15394411 | Msa0240430:intron | 25.0% |
| !! | GGTAAAGTTTTTCTTTTCTA+AGG | - | chr2_2:15394549-15394568 | None:intergenic | 25.0% |
| ! | CAATAAAAAATTGGGGAAAA+TGG | - | chr2_2:15394612-15394631 | None:intergenic | 25.0% |
| ! | GAAATTGAAAGTTATGAATG+TGG | + | chr2_2:15394657-15394676 | Msa0240430:intron | 25.0% |
| !!! | ATTTTTTACTTTCCTCTTCT+AGG | + | chr2_2:15394736-15394755 | Msa0240430:intron | 25.0% |
| !!! | TTTTTTACTTTCCTCTTCTA+GGG | + | chr2_2:15394737-15394756 | Msa0240430:intron | 25.0% |
| !! | GAATAGGTTTTTGTTAATTG+TGG | + | chr2_2:15394774-15394793 | Msa0240430:intron | 25.0% |
| ! | GAATTTGTGTATAAAAATGG+AGG | + | chr2_2:15394803-15394822 | Msa0240430:intron | 25.0% |
| !! | ATCTAATCATTGTGAAGTTT+TGG | + | chr2_2:15394844-15394863 | Msa0240430:intron | 25.0% |
| !! | TCTAATCATTGTGAAGTTTT+GGG | + | chr2_2:15394845-15394864 | Msa0240430:intron | 25.0% |
| ! | TATCATAAAGACTAAGACTA+TGG | - | chr2_2:15394977-15394996 | None:intergenic | 25.0% |
| !! | TTTTCTTGTTCTATCTTCAT+CGG | + | chr2_2:15395441-15395460 | Msa0240430:intron | 25.0% |
| !! | TCACAAAAGGATTTGAATTT+TGG | + | chr2_2:15395603-15395622 | Msa0240430:intron | 25.0% |
| !!! | AATTTTGGTAATATGTTCCT+TGG | + | chr2_2:15395618-15395637 | Msa0240430:intron | 25.0% |
| ! | TAATCGTTGAAGAATATTAG+GGG | + | chr2_2:15395748-15395767 | Msa0240430:intron | 25.0% |
| ! | GTATGTTTCATCACTTTATA+TGG | - | chr2_2:15395909-15395928 | None:intergenic | 25.0% |
| ! | GTGTAACCAAGAAAAAAAAA+AGG | - | chr2_2:15396168-15396187 | None:intergenic | 25.0% |
| !! | AACATTGACATTTTTATCGT+AGG | + | chr2_2:15396267-15396286 | Msa0240430:intron | 25.0% |
| !! | GCTTTGTTATAATAATGGTT+GGG | + | chr2_2:15396443-15396462 | Msa0240430:CDS | 25.0% |
| ! | GCATAATTGAATATAGTGTA+GGG | - | chr2_2:15396759-15396778 | None:intergenic | 25.0% |
| ! | AGCATAATTGAATATAGTGT+AGG | - | chr2_2:15396760-15396779 | None:intergenic | 25.0% |
| ! | AATAAACAACACATCTTACT+TGG | + | chr2_2:15397108-15397127 | Msa0240430:intron | 25.0% |
| !! | GACCATTCTAATATTTTCTA+TGG | + | chr2_2:15397130-15397149 | Msa0240430:intron | 25.0% |
| ! | ATTGTGGTCAAACAAAATTT+AGG | - | chr2_2:15397186-15397205 | None:intergenic | 25.0% |
| !! | ATCTAACTAATATCTGGTTT+AGG | + | chr2_2:15397672-15397691 | Msa0240430:three_prime_UTR | 25.0% |
| ! | ATTACAAAGGGTTCAAAATT+GGG | - | chr2_2:15397712-15397731 | None:intergenic | 25.0% |
| ! | AATTACAAAGGGTTCAAAAT+TGG | - | chr2_2:15397713-15397732 | None:intergenic | 25.0% |
| GCTTTCAATAAGTTCAAAAG+AGG | + | chr2_2:15394010-15394029 | Msa0240430:five_prime_UTR | 30.0% | |
| TTAGTTAAGCTTTCTCTGAA+CGG | - | chr2_2:15394176-15394195 | None:intergenic | 30.0% | |
| TTGTTGTAGCTTATTGAACT+AGG | + | chr2_2:15394436-15394455 | Msa0240430:intron | 30.0% | |
| GAGTAGCTACAAAATATGAA+AGG | - | chr2_2:15394570-15394589 | None:intergenic | 30.0% | |
| TTTGTAGCTACTCATTAGAA+TGG | + | chr2_2:15394577-15394596 | Msa0240430:intron | 30.0% | |
| !!! | TGGGTGAAGATTTTTAGTTT+GGG | + | chr2_2:15394677-15394696 | Msa0240430:intron | 30.0% |
| GGTATATTAGGATGTTGAAT+AGG | + | chr2_2:15394758-15394777 | Msa0240430:intron | 30.0% | |
| ! | CTAATCATTGTGAAGTTTTG+GGG | + | chr2_2:15394846-15394865 | Msa0240430:intron | 30.0% |
| TTAGATATGCACCTTGAATT+TGG | + | chr2_2:15395052-15395071 | Msa0240430:intron | 30.0% | |
| CAAGAATTACATCTTTCAAG+TGG | + | chr2_2:15395287-15395306 | Msa0240430:CDS | 30.0% | |
| TTTCACTTCTTCTAGTCAAA+TGG | + | chr2_2:15395350-15395369 | Msa0240430:CDS | 30.0% | |
| TTCACTTCTTCTAGTCAAAT+GGG | + | chr2_2:15395351-15395370 | Msa0240430:CDS | 30.0% | |
| ! | AGTACCTTTTCAAAAGCAAA+GGG | - | chr2_2:15395382-15395401 | None:intergenic | 30.0% |
| ! | AAGTACCTTTTCAAAAGCAA+AGG | - | chr2_2:15395383-15395402 | None:intergenic | 30.0% |
| ! | TTAATCAATACAGTGCTGTT+TGG | + | chr2_2:15395495-15395514 | Msa0240430:intron | 30.0% |
| GTGTCAGATTTCTATGTAAT+TGG | + | chr2_2:15395640-15395659 | Msa0240430:intron | 30.0% | |
| ! | TCTAACACTCACTCTTTTAT+TGG | + | chr2_2:15395845-15395864 | Msa0240430:intron | 30.0% |
| ! | CTAACACTCACTCTTTTATT+GGG | + | chr2_2:15395846-15395865 | Msa0240430:intron | 30.0% |
| CGAGTCTTACAATTTGAAAA+TGG | + | chr2_2:15395880-15395899 | Msa0240430:intron | 30.0% | |
| TCTAACACTCACTCATTTAT+TGG | - | chr2_2:15395943-15395962 | None:intergenic | 30.0% | |
| ATTCTTCTGTCAACATTAGT+TGG | + | chr2_2:15395992-15396011 | Msa0240430:intron | 30.0% | |
| ACCAAGAAAAAAAAAAGGGA+GGG | - | chr2_2:15396163-15396182 | None:intergenic | 30.0% | |
| AACCAAGAAAAAAAAAAGGG+AGG | - | chr2_2:15396164-15396183 | None:intergenic | 30.0% | |
| TTAAATAAACTTGAAGAGGC+TGG | + | chr2_2:15396233-15396252 | Msa0240430:intron | 30.0% | |
| CCAGTATTATTAATTCCTTC+CGG | + | chr2_2:15396376-15396395 | Msa0240430:CDS | 30.0% | |
| CCATTATTATAACAAAGCCA+AGG | - | chr2_2:15396441-15396460 | None:intergenic | 30.0% | |
| !! | CCTTGGCTTTGTTATAATAA+TGG | + | chr2_2:15396438-15396457 | Msa0240430:CDS | 30.0% |
| !! | GGCTTTGTTATAATAATGGT+TGG | + | chr2_2:15396442-15396461 | Msa0240430:CDS | 30.0% |
| TTGAATATAGTGTAGGGAAA+AGG | - | chr2_2:15396753-15396772 | None:intergenic | 30.0% | |
| ! | TAGTGACAGATATGAAGTTT+TGG | + | chr2_2:15396784-15396803 | Msa0240430:CDS | 30.0% |
| TAGATGTAGATAAAAGCTTC+TGG | - | chr2_2:15396843-15396862 | None:intergenic | 30.0% | |
| ! | AAGCTTTTATCTACATCTAC+AGG | + | chr2_2:15396844-15396863 | Msa0240430:CDS | 30.0% |
| TGATATGTTTAGATAGTTGC+AGG | + | chr2_2:15396890-15396909 | Msa0240430:intron | 30.0% | |
| TGGTAGATTGATAAAGAGTT+TGG | + | chr2_2:15397384-15397403 | Msa0240430:CDS | 30.0% | |
| TGTAAGACCTTTCATTTCAA+GGG | - | chr2_2:15397609-15397628 | None:intergenic | 30.0% | |
| ATGTAAGACCTTTCATTTCA+AGG | - | chr2_2:15397610-15397629 | None:intergenic | 30.0% | |
| TTTGAACCCTTTGTAATTAC+CGG | + | chr2_2:15397715-15397734 | Msa0240430:three_prime_UTR | 30.0% | |
| AACTTACCAGGAAGAAGAAA+AGG | - | chr2_2:15394279-15394298 | None:intergenic | 35.0% | |
| !! | TTCTTTTCTAAGGGGATGAA+AGG | - | chr2_2:15394539-15394558 | None:intergenic | 35.0% |
| !!! | GTGGGTGAAGATTTTTAGTT+TGG | + | chr2_2:15394676-15394695 | Msa0240430:intron | 35.0% |
| !! | AGTTTGGGTTTTCAGATGAA+AGG | + | chr2_2:15394692-15394711 | Msa0240430:intron | 35.0% |
| !! | GTTTGGGTTTTCAGATGAAA+GGG | + | chr2_2:15394693-15394712 | Msa0240430:intron | 35.0% |
| !! | TTCCTCTTCTAGGGTATATT+AGG | + | chr2_2:15394746-15394765 | Msa0240430:intron | 35.0% |
| ATCCTAATATACCCTAGAAG+AGG | - | chr2_2:15394751-15394770 | None:intergenic | 35.0% | |
| TTTAAACCATCCGATTCCTA+GGG | + | chr2_2:15394869-15394888 | Msa0240430:intron | 35.0% | |
| ! | TGGTAATTTGAAGTTCAGTC+TGG | + | chr2_2:15394903-15394922 | Msa0240430:intron | 35.0% |
| ! | TAATTTGAAGTTCAGTCTGG+AGG | + | chr2_2:15394906-15394925 | Msa0240430:intron | 35.0% |
| AGGTAAGTAAAGTCTGTTCA+AGG | + | chr2_2:15394926-15394945 | Msa0240430:intron | 35.0% | |
| AGACTACGATTCCAAATTCA+AGG | - | chr2_2:15395066-15395085 | None:intergenic | 35.0% | |
| TTGGAGAAACTTGAAATCAC+TGG | + | chr2_2:15395169-15395188 | Msa0240430:CDS | 35.0% | |
| AAATCACTGGTCATCATGTT+AGG | + | chr2_2:15395182-15395201 | Msa0240430:CDS | 35.0% | |
| AATCACTGGTCATCATGTTA+GGG | + | chr2_2:15395183-15395202 | Msa0240430:CDS | 35.0% | |
| GTAATTCTTGATTCAGCTTG+AGG | - | chr2_2:15395277-15395296 | None:intergenic | 35.0% | |
| ! | GAATTACATCTTTCAAGTGG+TGG | + | chr2_2:15395290-15395309 | Msa0240430:CDS | 35.0% |
| GTGGATGAAAGTCTCTATAT+GGG | + | chr2_2:15395309-15395328 | Msa0240430:CDS | 35.0% | |
| TGGATGAAAGTCTCTATATG+GGG | + | chr2_2:15395310-15395329 | Msa0240430:CDS | 35.0% | |
| TCACTTCTTCTAGTCAAATG+GGG | + | chr2_2:15395352-15395371 | Msa0240430:CDS | 35.0% | |
| GCAGAAAATTATGAAGCAAG+AGG | - | chr2_2:15395406-15395425 | None:intergenic | 35.0% | |
| ! | CTTGCTTCATAATTTTCTGC+TGG | + | chr2_2:15395406-15395425 | Msa0240430:intron | 35.0% |
| ! | TTCATAATTTTCTGCTGGCA+CGG | + | chr2_2:15395411-15395430 | Msa0240430:intron | 35.0% |
| TTCTATCTTCATCGGTGATT+TGG | + | chr2_2:15395449-15395468 | Msa0240430:intron | 35.0% | |
| TCTATCTTCATCGGTGATTT+GGG | + | chr2_2:15395450-15395469 | Msa0240430:intron | 35.0% | |
| TACATAGAAATCTGACACCA+AGG | - | chr2_2:15395638-15395657 | None:intergenic | 35.0% | |
| AAAGCATAGTAAACTGTTCG+CGG | - | chr2_2:15395729-15395748 | None:intergenic | 35.0% | |
| !! | TTTCGATTATGAGAAGTGCT+TGG | + | chr2_2:15396021-15396040 | Msa0240430:intron | 35.0% |
| !!! | ACCCTCCCTTTTTTTTTTCT+TGG | + | chr2_2:15396159-15396178 | Msa0240430:intron | 35.0% |
| CCGGAAGGAATTAATAATAC+TGG | - | chr2_2:15396379-15396398 | None:intergenic | 35.0% | |
| !!! | ATGATTTTTGGTTATGGCCT+TGG | + | chr2_2:15396421-15396440 | Msa0240430:CDS | 35.0% |
| ACTTAAGTCCAATCAGGTAA+GGG | - | chr2_2:15396489-15396508 | None:intergenic | 35.0% | |
| AACTTAAGTCCAATCAGGTA+AGG | - | chr2_2:15396490-15396509 | None:intergenic | 35.0% | |
| AATTTAGAGGACTAGACTTG+TGG | - | chr2_2:15396554-15396573 | None:intergenic | 35.0% | |
| TTCAGCAATGGTTAGAGAAA+TGG | + | chr2_2:15396643-15396662 | Msa0240430:intron | 35.0% | |
| CTGGTTTCATCAATTTCAAG+TGG | + | chr2_2:15396707-15396726 | Msa0240430:CDS | 35.0% | |
| GCAAATATGACTGAGTCTAA+AGG | + | chr2_2:15397243-15397262 | Msa0240430:intron | 35.0% | |
| TAATGGTCAATATTGTGCAG+TGG | + | chr2_2:15397364-15397383 | Msa0240430:intron | 35.0% | |
| ATTGCCGTTATTACCATTGT+TGG | + | chr2_2:15397475-15397494 | Msa0240430:CDS | 35.0% | |
| GAAGCCAACAATGGTAATAA+CGG | - | chr2_2:15397482-15397501 | None:intergenic | 35.0% | |
| ATAAACAGTGAAGCCAACAA+TGG | - | chr2_2:15397491-15397510 | None:intergenic | 35.0% | |
| GCTTCACTGTTTATGCAAAA+AGG | + | chr2_2:15397497-15397516 | Msa0240430:CDS | 35.0% | |
| GTAAGACCTTTCATTTCAAG+GGG | - | chr2_2:15397608-15397627 | None:intergenic | 35.0% | |
| CTGATTCCGGTAATTACAAA+GGG | - | chr2_2:15397724-15397743 | None:intergenic | 35.0% | |
| AACAGAAGAACACTTCAACG+CGG | - | chr2_2:15394077-15394096 | None:intergenic | 40.0% | |
| ! | TCTTCTCCTTTTCTTCTTCC+TGG | + | chr2_2:15394270-15394289 | Msa0240430:five_prime_UTR | 40.0% |
| ATTCACGTGATATAGCGTTG+CGG | + | chr2_2:15394467-15394486 | Msa0240430:intron | 40.0% | |
| GTTTAAACCATCCGATTCCT+AGG | + | chr2_2:15394868-15394887 | Msa0240430:intron | 40.0% | |
| TTAAACCATCCGATTCCTAG+GGG | + | chr2_2:15394870-15394889 | Msa0240430:intron | 40.0% | |
| ATCACTGGTCATCATGTTAG+GGG | + | chr2_2:15395184-15395203 | Msa0240430:CDS | 40.0% | |
| TTCAACAACCCTTGGTTCAT+CGG | - | chr2_2:15395239-15395258 | None:intergenic | 40.0% | |
| ATTTCAGCTTCAACAACCCT+TGG | - | chr2_2:15395247-15395266 | None:intergenic | 40.0% | |
| GGTGGATGAAAGTCTCTATA+TGG | + | chr2_2:15395308-15395327 | Msa0240430:CDS | 40.0% | |
| !! | AGTGCCCTTTGCTTTTGAAA+AGG | + | chr2_2:15395375-15395394 | Msa0240430:CDS | 40.0% |
| CTTCAGAATAATGACACCAC+TGG | + | chr2_2:15396045-15396064 | Msa0240430:intron | 40.0% | |
| ! | ATATTTTCCTGCCAGTCAGT+AGG | + | chr2_2:15396121-15396140 | Msa0240430:intron | 40.0% |
| AAGCAACAATTCCTACTGAC+TGG | - | chr2_2:15396135-15396154 | None:intergenic | 40.0% | |
| GAAAAAAAAAAGGGAGGGTG+AGG | - | chr2_2:15396158-15396177 | None:intergenic | 40.0% | |
| GTAGGTTCTTTATCCAGTGA+TGG | + | chr2_2:15396285-15396304 | Msa0240430:intron | 40.0% | |
| ! | TTCTTTATCCAGTGATGGAG+TGG | + | chr2_2:15396290-15396309 | Msa0240430:CDS | 40.0% |
| ! | TCTTTATCCAGTGATGGAGT+GGG | + | chr2_2:15396291-15396310 | Msa0240430:CDS | 40.0% |
| !!! | GCTGGGATGATTTTTGGTTA+TGG | + | chr2_2:15396415-15396434 | Msa0240430:CDS | 40.0% |
| ATAATGGTTGGGACAACCAT+TGG | + | chr2_2:15396454-15396473 | Msa0240430:CDS | 40.0% | |
| TAATGGTTGGGACAACCATT+GGG | + | chr2_2:15396455-15396474 | Msa0240430:CDS | 40.0% | |
| GACTTACATGAATACGGTCA+CGG | - | chr2_2:15396513-15396532 | None:intergenic | 40.0% | |
| ! | CTTTGTTGCTTGTTCAGCAA+TGG | + | chr2_2:15396631-15396650 | Msa0240430:intron | 40.0% |
| CTAATCATTGCAGCATTCTG+GGG | - | chr2_2:15396669-15396688 | None:intergenic | 40.0% | |
| CCTAATCATTGCAGCATTCT+GGG | - | chr2_2:15396670-15396689 | None:intergenic | 40.0% | |
| !! | AAGTTTTGGCCCTACTTTTG+TGG | + | chr2_2:15396798-15396817 | Msa0240430:CDS | 40.0% |
| GCTACTGATCCACAAAAGTA+GGG | - | chr2_2:15396810-15396829 | None:intergenic | 40.0% | |
| TGCTACTGATCCACAAAAGT+AGG | - | chr2_2:15396811-15396830 | None:intergenic | 40.0% | |
| ! | TACTTTTGTGGATCAGTAGC+AGG | + | chr2_2:15396810-15396829 | Msa0240430:CDS | 40.0% |
| CTTGCTCTATCTTCCTAGAA+GGG | - | chr2_2:15397025-15397044 | None:intergenic | 40.0% | |
| TCTTGCTCTATCTTCCTAGA+AGG | - | chr2_2:15397026-15397045 | None:intergenic | 40.0% | |
| GTTGTATACGATTTCCACTG+TGG | - | chr2_2:15397440-15397459 | None:intergenic | 40.0% | |
| !! | TGCTAGTCTTGAGATGAAGA+AGG | + | chr2_2:15397579-15397598 | Msa0240430:CDS | 40.0% |
| AGGTTTCCCCTTGAAATGAA+AGG | + | chr2_2:15397599-15397618 | Msa0240430:exon | 40.0% | |
| ! | GCTGATTCCGGTAATTACAA+AGG | - | chr2_2:15397725-15397744 | None:intergenic | 40.0% |
| ATTACCGGAATCAGCATATG+TGG | + | chr2_2:15397730-15397749 | Msa0240430:three_prime_UTR | 40.0% | |
| TTACCGGAATCAGCATATGT+GGG | + | chr2_2:15397731-15397750 | Msa0240430:three_prime_UTR | 40.0% | |
| ! | GGGTTTTCAGATGAAAGGGT+AGG | + | chr2_2:15394697-15394716 | Msa0240430:intron | 45.0% |
| TTCAAGGATTGTTCCAGCCA+GGG | + | chr2_2:15394942-15394961 | Msa0240430:intron | 45.0% | |
| GACTATGGTTTCACAATCCC+TGG | - | chr2_2:15394962-15394981 | None:intergenic | 45.0% | |
| ! | GTTTCATTTTCACAGCCCTC+TGG | + | chr2_2:15395112-15395131 | Msa0240430:intron | 45.0% |
| GTCATCATTGAGATGCCAGA+GGG | - | chr2_2:15395130-15395149 | None:intergenic | 45.0% | |
| TGTCATCATTGAGATGCCAG+AGG | - | chr2_2:15395131-15395150 | None:intergenic | 45.0% | |
| AGTTTCTCCAACTCCCTTGA+CGG | - | chr2_2:15395160-15395179 | None:intergenic | 45.0% | |
| TCACTGGTCATCATGTTAGG+GGG | + | chr2_2:15395185-15395204 | Msa0240430:CDS | 45.0% | |
| !! | GGGGGAGTACTGAATATGTT+AGG | + | chr2_2:15395203-15395222 | Msa0240430:CDS | 45.0% |
| TTGCCATATCCGATGAACCA+AGG | + | chr2_2:15395227-15395246 | Msa0240430:CDS | 45.0% | |
| TGCCATATCCGATGAACCAA+GGG | + | chr2_2:15395228-15395247 | Msa0240430:CDS | 45.0% | |
| AACCCTTGGTTCATCGGATA+TGG | - | chr2_2:15395233-15395252 | None:intergenic | 45.0% | |
| TCTGCGAAACAACAAACCAG+TGG | - | chr2_2:15396064-15396083 | None:intergenic | 45.0% | |
| ! | AACAATTCCTACTGACTGGC+AGG | - | chr2_2:15396131-15396150 | None:intergenic | 45.0% |
| CAGTGAAGCAACGAGTACAA+GGG | - | chr2_2:15396347-15396366 | None:intergenic | 45.0% | |
| !! | TGGTTGGCTGGGATGATTTT+TGG | + | chr2_2:15396409-15396428 | Msa0240430:CDS | 45.0% |
| TAAGTCCAATCAGGTAAGGG+AGG | - | chr2_2:15396486-15396505 | None:intergenic | 45.0% | |
| CACGGAACTTAAGTCCAATC+AGG | - | chr2_2:15396495-15396514 | None:intergenic | 45.0% | |
| CCCAGAATGCTGCAATGATT+AGG | + | chr2_2:15396667-15396686 | Msa0240430:CDS | 45.0% | |
| GCCTAATCATTGCAGCATTC+TGG | - | chr2_2:15396671-15396690 | None:intergenic | 45.0% | |
| ! | CTGCAATGATTAGGCTTGCT+GGG | + | chr2_2:15396676-15396695 | Msa0240430:CDS | 45.0% |
| !! | TGCAATGATTAGGCTTGCTG+GGG | + | chr2_2:15396677-15396696 | Msa0240430:CDS | 45.0% |
| TTGTGGATCAGTAGCAGGAA+TGG | + | chr2_2:15396815-15396834 | Msa0240430:CDS | 45.0% | |
| GAAGGGTGATAGCTAGAGAA+GGG | - | chr2_2:15397008-15397027 | None:intergenic | 45.0% | |
| AGAAGGGTGATAGCTAGAGA+AGG | - | chr2_2:15397009-15397028 | None:intergenic | 45.0% | |
| TCTCTAGCTATCACCCTTCT+AGG | + | chr2_2:15397009-15397028 | Msa0240430:intron | 45.0% | |
| AGTTTGGCTGATGCACAGTA+TGG | + | chr2_2:15397400-15397419 | Msa0240430:CDS | 45.0% | |
| GTTTGGCTGATGCACAGTAT+GGG | + | chr2_2:15397401-15397420 | Msa0240430:CDS | 45.0% | |
| AACAGAGGCAGCTTCTTCAT+TGG | - | chr2_2:15397551-15397570 | None:intergenic | 45.0% | |
| ! | AAGAAGCTGCCTCTGTTTCT+GGG | + | chr2_2:15397554-15397573 | Msa0240430:CDS | 45.0% |
| ACTAGCATTCCCAGAAACAG+AGG | - | chr2_2:15397566-15397585 | None:intergenic | 45.0% | |
| AGGGTTCAAAATTGGGAGAG+AGG | - | chr2_2:15397705-15397724 | None:intergenic | 45.0% | |
| !! | CATCCCACATATGCTGATTC+CGG | - | chr2_2:15397737-15397756 | None:intergenic | 45.0% |
| CAGAGAGAAACGAACGGTAG+AGG | - | chr2_2:15394201-15394220 | None:intergenic | 50.0% | |
| CAGCTGCAGAGAGAAACGAA+CGG | - | chr2_2:15394207-15394226 | None:intergenic | 50.0% | |
| CATCCGATTCCTAGGGGAAA+GGG | + | chr2_2:15394876-15394895 | Msa0240430:intron | 50.0% | |
| ATCCGATTCCTAGGGGAAAG+GGG | + | chr2_2:15394877-15394896 | Msa0240430:intron | 50.0% | |
| GTTCAAGGATTGTTCCAGCC+AGG | + | chr2_2:15394941-15394960 | Msa0240430:intron | 50.0% | |
| ATGGTTTCACAATCCCTGGC+TGG | - | chr2_2:15394958-15394977 | None:intergenic | 50.0% | |
| !! | ACAGTGCTGTTTGGCTGTCA+TGG | + | chr2_2:15395504-15395523 | Msa0240430:intron | 50.0% |
| CCAGTGAAGCAACGAGTACA+AGG | - | chr2_2:15396348-15396367 | None:intergenic | 50.0% | |
| CCTTGTACTCGTTGCTTCAC+TGG | + | chr2_2:15396345-15396364 | Msa0240430:CDS | 50.0% | |
| AATCATCCCAGCCAACCACA+TGG | - | chr2_2:15396407-15396426 | None:intergenic | 50.0% | |
| ATGGTCCTCCCTTACCTGAT+TGG | + | chr2_2:15396478-15396497 | Msa0240430:CDS | 50.0% | |
| GCTGCAATGATTAGGCTTGC+TGG | + | chr2_2:15396675-15396694 | Msa0240430:CDS | 50.0% | |
| !! | ATGATTAGGCTTGCTGGGGA+AGG | + | chr2_2:15396681-15396700 | Msa0240430:CDS | 50.0% |
| !! | TGATTAGGCTTGCTGGGGAA+GGG | + | chr2_2:15396682-15396701 | Msa0240430:CDS | 50.0% |
| GGTGATAGCTAGAGAAGGGA+TGG | - | chr2_2:15397004-15397023 | None:intergenic | 50.0% | |
| CGATTTCCACTGTGGTCATG+TGG | - | chr2_2:15397432-15397451 | None:intergenic | 50.0% | |
| GAAGAAGCTGCCTCTGTTTC+TGG | + | chr2_2:15397553-15397572 | Msa0240430:CDS | 50.0% | |
| CGGAATCAGCATATGTGGGA+TGG | + | chr2_2:15397735-15397754 | Msa0240430:three_prime_UTR | 50.0% | |
| TCCAACTCCACCACCGTACA+CGG | + | chr2_2:15394114-15394133 | Msa0240430:five_prime_UTR | 55.0% | |
| AAACCTAGGTGACCGGAGTG+AGG | - | chr2_2:15394149-15394168 | None:intergenic | 55.0% | |
| CTCTGAACGGAGCGAAACCT+AGG | - | chr2_2:15394163-15394182 | None:intergenic | 55.0% | |
| CCTTTCCCCTAGGAATCGGA+TGG | - | chr2_2:15394878-15394897 | None:intergenic | 55.0% | |
| CCATCCGATTCCTAGGGGAA+AGG | + | chr2_2:15394875-15394894 | Msa0240430:intron | 55.0% | |
| TGCCCCTTTCCCCTAGGAAT+CGG | - | chr2_2:15394882-15394901 | None:intergenic | 55.0% | |
| TGATGACACCAGAGCCGTCA+AGG | + | chr2_2:15395143-15395162 | Msa0240430:CDS | 55.0% | |
| GATGACACCAGAGCCGTCAA+GGG | + | chr2_2:15395144-15395163 | Msa0240430:CDS | 55.0% | |
| GTTGCTTCCCACTCCATCAC+TGG | - | chr2_2:15396301-15396320 | None:intergenic | 55.0% | |
| GAGTGGGAAGCAACTGCCTT+TGG | + | chr2_2:15396307-15396326 | Msa0240430:CDS | 55.0% | |
| GTACAAGGGCGAGAACTGGT+CGG | - | chr2_2:15396333-15396352 | None:intergenic | 55.0% | |
| ACGAGTACAAGGGCGAGAAC+TGG | - | chr2_2:15396337-15396356 | None:intergenic | 55.0% | |
| TCCCAGCCAACCACATGGAA+GGG | - | chr2_2:15396402-15396421 | None:intergenic | 55.0% | |
| ATCCCAGCCAACCACATGGA+AGG | - | chr2_2:15396403-15396422 | None:intergenic | 55.0% | |
| GGTTGGGACAACCATTGGGA+TGG | + | chr2_2:15396459-15396478 | Msa0240430:CDS | 55.0% | |
| GTAAGGGAGGACCATCCCAA+TGG | - | chr2_2:15396473-15396492 | None:intergenic | 55.0% | |
| TGGCTGATGCACAGTATGGG+AGG | + | chr2_2:15397404-15397423 | Msa0240430:CDS | 55.0% | |
| AACTCCACCACCGTACACGG+CGG | + | chr2_2:15394117-15394136 | Msa0240430:five_prime_UTR | 60.0% | |
| CGGAGCGAAACCTAGGTGAC+CGG | - | chr2_2:15394156-15394175 | None:intergenic | 60.0% | |
| ! | TTCCTAGGGGAAAGGGGCAC+TGG | + | chr2_2:15394883-15394902 | Msa0240430:intron | 60.0% |
| TACCAGTGCCCCTTTCCCCT+AGG | - | chr2_2:15394888-15394907 | None:intergenic | 60.0% | |
| ACCAGAGCCGTCAAGGGAGT+TGG | + | chr2_2:15395150-15395169 | Msa0240430:CDS | 60.0% | |
| TCCAACTCCCTTGACGGCTC+TGG | - | chr2_2:15395154-15395173 | None:intergenic | 60.0% | |
| TTCCTTCCGGCCCTTCCATG+TGG | + | chr2_2:15396389-15396408 | Msa0240430:CDS | 60.0% | |
| AACCACATGGAAGGGCCGGA+AGG | - | chr2_2:15396394-15396413 | None:intergenic | 60.0% | |
| TTCCGGCCCTTCCATGTGGT+TGG | + | chr2_2:15396393-15396412 | Msa0240430:CDS | 60.0% | |
| AGCCAACCACATGGAAGGGC+CGG | - | chr2_2:15396398-15396417 | None:intergenic | 60.0% | |
| ! | GCCCTTCCATGTGGTTGGCT+GGG | + | chr2_2:15396398-15396417 | Msa0240430:CDS | 60.0% |
| ! | GAGGCACCACATGACCACAG+TGG | + | chr2_2:15397423-15397442 | Msa0240430:CDS | 60.0% |
| !! | GCCGTGTACGGTGGTGGAGT+TGG | - | chr2_2:15394118-15394137 | None:intergenic | 65.0% |
| CCTAGGTGACCGGAGTGAGG+CGG | - | chr2_2:15394146-15394165 | None:intergenic | 65.0% | |
| GGCGAGAACTGGTCGGCCAA+AGG | - | chr2_2:15396326-15396345 | None:intergenic | 65.0% | |
| GGCCCTTCCATGTGGTTGGC+TGG | + | chr2_2:15396397-15396416 | Msa0240430:CDS | 65.0% | |
| CCGCCTCACTCCGGTCACCT+AGG | + | chr2_2:15394143-15394162 | Msa0240430:five_prime_UTR | 70.0% | |
| !! | GGCTTGCTGGGGAAGGGAGC+TGG | + | chr2_2:15396688-15396707 | Msa0240430:CDS | 70.0% |
| GCGACCGCCGTGTACGGTGG+TGG | - | chr2_2:15394124-15394143 | None:intergenic | 75.0% | |
| GAGGCGGCGACCGCCGTGTA+CGG | - | chr2_2:15394130-15394149 | None:intergenic | 75.0% | |
| ! | GCGGCGACCGCCGTGTACGG+TGG | - | chr2_2:15394127-15394146 | None:intergenic | 80.0% |
| ! | CGGCGGTCGCCGCCTCACTC+CGG | + | chr2_2:15394134-15394153 | Msa0240430:five_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 15393979 | 15397827 | 15393979 | ID=Msa0240430;Name=Msa0240430 |
| chr2_2 | mRNA | 15393979 | 15397827 | 15393979 | ID=Msa0240430-mRNA-1;Parent=Msa0240430;Name=Msa0240430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=328|1|1|1|1|1|5|215|312 |
| chr2_2 | exon | 15393979 | 15394291 | 15393979 | ID=Msa0240430-mRNA-1:exon:6433;Parent=Msa0240430-mRNA-1 |
| chr2_2 | exon | 15395127 | 15395396 | 15395127 | ID=Msa0240430-mRNA-1:exon:6434;Parent=Msa0240430-mRNA-1 |
| chr2_2 | exon | 15396289 | 15396525 | 15396289 | ID=Msa0240430-mRNA-1:exon:6435;Parent=Msa0240430-mRNA-1 |
| chr2_2 | exon | 15396648 | 15396865 | 15396648 | ID=Msa0240430-mRNA-1:exon:6436;Parent=Msa0240430-mRNA-1 |
| chr2_2 | exon | 15397384 | 15397827 | 15397384 | ID=Msa0240430-mRNA-1:exon:6437;Parent=Msa0240430-mRNA-1 |
| chr2_2 | five_prime_UTR | 15393979 | 15394291 | 15393979 | ID=Msa0240430-mRNA-1:five_prime_utr;Parent=Msa0240430-mRNA-1 |
| chr2_2 | five_prime_UTR | 15395127 | 15395141 | 15395127 | ID=Msa0240430-mRNA-1:five_prime_utr;Parent=Msa0240430-mRNA-1 |
| chr2_2 | CDS | 15395142 | 15395396 | 15395142 | ID=Msa0240430-mRNA-1:cds;Parent=Msa0240430-mRNA-1 |
| chr2_2 | CDS | 15396289 | 15396525 | 15396289 | ID=Msa0240430-mRNA-1:cds;Parent=Msa0240430-mRNA-1 |
| chr2_2 | CDS | 15396648 | 15396865 | 15396648 | ID=Msa0240430-mRNA-1:cds;Parent=Msa0240430-mRNA-1 |
| chr2_2 | CDS | 15397384 | 15397612 | 15397384 | ID=Msa0240430-mRNA-1:cds;Parent=Msa0240430-mRNA-1 |
| chr2_2 | three_prime_UTR | 15397613 | 15397827 | 15397613 | ID=Msa0240430-mRNA-1:three_prime_utr;Parent=Msa0240430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
