Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198190 | AES64673.2 | 95.146 | 309 | 4 | 1 | 1 | 298 | 41 | 349 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198190 | sp|Q55909|Y305_SYNY3 | 28.293 | 205 | 132 | 6 | 82 | 284 | 18 | 209 | 1.34e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198190 | G7IFS2 | 95.146 | 309 | 4 | 1 | 1 | 298 | 41 | 349 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029020 | Msa0198190 | 0.804410 | 2.189524e-49 | -8.615850e-47 |
| Msa0038350 | Msa0198190 | 0.804886 | 1.741586e-49 | -8.615850e-47 |
| Msa0138410 | Msa0198190 | 0.909828 | 3.697371e-82 | -8.615850e-47 |
| Msa0198170 | Msa0198190 | 0.908172 | 2.285938e-81 | -8.615850e-47 |
| Msa0198190 | Msa0216810 | 0.804876 | 1.750050e-49 | -8.615850e-47 |
| Msa0198190 | Msa0240430 | 0.882145 | 1.331329e-70 | -8.615850e-47 |
| Msa0198190 | Msa0303860 | 0.808201 | 3.479089e-50 | -8.615850e-47 |
| Msa0198190 | Msa0621720 | 0.800259 | 1.567413e-48 | -8.615850e-47 |
| Msa0198190 | Msa0659800 | 0.830253 | 3.259085e-55 | -8.615850e-47 |
| Msa0198190 | Msa1033440 | 0.807784 | 4.267556e-50 | -8.615850e-47 |
| Msa0198190 | Msa1073110 | 0.825073 | 5.718936e-54 | -8.615850e-47 |
| Msa0198190 | Msa1128160 | -0.811430 | 7.027831e-51 | -8.615850e-47 |
| Msa0198190 | Msa1165360 | -0.812036 | 5.188195e-51 | -8.615850e-47 |
| Msa0198190 | Msa1265820 | 0.802003 | 6.893358e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198190 | MtrunA17_Chr2g0291431 | 95.146 | 309 | 4 | 1 | 1 | 298 | 1 | 309 | 0.0 | 592 |
| Msa0198190 | MtrunA17_Chr5g0398451 | 44.444 | 225 | 121 | 1 | 60 | 280 | 88 | 312 | 7.67e-69 | 218 |
| Msa0198190 | MtrunA17_Chr4g0056711 | 49.754 | 203 | 102 | 0 | 78 | 280 | 105 | 307 | 9.92e-68 | 215 |
| Msa0198190 | MtrunA17_Chr3g0109441 | 90.278 | 72 | 7 | 0 | 165 | 236 | 1 | 72 | 3.50e-41 | 139 |
| Msa0198190 | MtrunA17_Chr4g0065691 | 28.125 | 192 | 131 | 5 | 105 | 294 | 62 | 248 | 2.51e-15 | 75.1 |
| Msa0198190 | MtrunA17_Chr4g0014341 | 32.624 | 141 | 89 | 3 | 95 | 233 | 149 | 285 | 1.54e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198190 | AT2G02370.2 | 60.323 | 310 | 104 | 3 | 11 | 309 | 10 | 311 | 2.03e-131 | 378 |
| Msa0198190 | AT2G02370.1 | 60.323 | 310 | 104 | 3 | 11 | 309 | 10 | 311 | 2.03e-131 | 378 |
| Msa0198190 | AT2G02370.3 | 60.323 | 310 | 104 | 3 | 11 | 309 | 10 | 311 | 2.03e-131 | 378 |
| Msa0198190 | AT1G12450.1 | 40.426 | 282 | 152 | 3 | 12 | 280 | 15 | 293 | 3.02e-69 | 219 |
| Msa0198190 | AT4G22850.1 | 46.602 | 206 | 109 | 1 | 76 | 280 | 86 | 291 | 4.33e-66 | 210 |
| Msa0198190 | AT4G12000.1 | 47.573 | 206 | 107 | 1 | 76 | 280 | 95 | 300 | 2.72e-64 | 206 |
| Msa0198190 | AT4G12000.2 | 47.573 | 206 | 107 | 1 | 76 | 280 | 95 | 300 | 2.72e-64 | 206 |
| Msa0198190 | AT4G12000.3 | 47.573 | 206 | 107 | 1 | 76 | 280 | 95 | 300 | 2.72e-64 | 206 |
| Msa0198190 | AT4G22850.2 | 49.701 | 167 | 84 | 0 | 76 | 242 | 86 | 252 | 3.37e-57 | 187 |
| Msa0198190 | AT1G03260.1 | 27.624 | 181 | 123 | 4 | 117 | 294 | 76 | 251 | 1.24e-15 | 76.3 |
| Msa0198190 | AT1G22850.2 | 31.915 | 141 | 90 | 3 | 95 | 233 | 155 | 291 | 6.39e-12 | 65.9 |
| Msa0198190 | AT1G22850.1 | 31.915 | 141 | 90 | 3 | 95 | 233 | 155 | 291 | 9.26e-12 | 65.9 |
| Msa0198190 | AT5G19070.1 | 29.665 | 209 | 134 | 6 | 105 | 304 | 62 | 266 | 1.92e-11 | 64.3 |
Find 114 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGCTGCCTCTGTTTC+TGG | 0.127067 | 2_1:+16790946 | Msa0198190:CDS |
| GCCTAATCATTGCAGCATTC+TGG | 0.175711 | 2_1:-16790061 | None:intergenic |
| AATTACAAAGGGTTCAAAAT+TGG | 0.209973 | 2_1:-16791102 | None:intergenic |
| GGCCCTTCCATGTGGTTGGC+TGG | 0.246113 | 2_1:+16789790 | Msa0198190:CDS |
| ACACTAATGTCATAATAAAT+TGG | 0.290695 | 2_1:-16791029 | None:intergenic |
| GCTTCACTGTTTATGCAAAA+AGG | 0.293092 | 2_1:+16790890 | Msa0198190:CDS |
| AACCCTTGGTTCATCGGATA+TGG | 0.298073 | 2_1:-16788623 | None:intergenic |
| CCTTGGCTTTGTTATAATAA+TGG | 0.304861 | 2_1:+16789831 | Msa0198190:CDS |
| TTTGAACCCTTTGTAATTAC+CGG | 0.311140 | 2_1:+16791107 | Msa0198190:exon |
| AAATCACTGGTCATCATGTT+AGG | 0.313901 | 2_1:+16788575 | Msa0198190:CDS |
| CCAGTATTATTAATTCCTTC+TGG | 0.313993 | 2_1:+16789769 | Msa0198190:CDS |
| AATTAATAATACTGGAAATA+AGG | 0.316723 | 2_1:-16789761 | None:intergenic |
| GGTGGATGAAAGTCTCTATA+TGG | 0.320063 | 2_1:+16788701 | Msa0198190:CDS |
| TTATGTATCTAACTAATATC+TGG | 0.340143 | 2_1:+16791058 | Msa0198190:CDS |
| ATTACAAAGGGTTCAAAATT+GGG | 0.357671 | 2_1:-16791101 | None:intergenic |
| CCTAATCATTGCAGCATTCT+GGG | 0.361713 | 2_1:-16790060 | None:intergenic |
| ATGGTCCTCCCTTACCTGAT+TGG | 0.362401 | 2_1:+16789871 | Msa0198190:CDS |
| CCAGAAGGAATTAATAATAC+TGG | 0.368326 | 2_1:-16789769 | None:intergenic |
| AGTTTGGCTGATGCACAGTA+TGG | 0.369283 | 2_1:+16790793 | Msa0198190:CDS |
| ATTGCCGTTATTACCATTGT+TGG | 0.378829 | 2_1:+16790868 | Msa0198190:CDS |
| GGCTTGCTGGGGAAGGGAGC+TGG | 0.381729 | 2_1:+16790081 | Msa0198190:CDS |
| AACAGAGGCAGCTTCTTCAT+TGG | 0.399823 | 2_1:-16790941 | None:intergenic |
| TCCAACTCCCTTGACGGCTC+TGG | 0.403925 | 2_1:-16788544 | None:intergenic |
| TAGATGTAGATAAAAGCTTC+TGG | 0.404507 | 2_1:-16790233 | None:intergenic |
| TTCAGCAATGGTTAGAGAAA+TGG | 0.404756 | 2_1:+16790036 | Msa0198190:intron |
| TGGTAGATTGATAAAGAGTT+TGG | 0.407618 | 2_1:+16790777 | Msa0198190:CDS |
| TTCTGGCCCTTCCATGTGGT+TGG | 0.408675 | 2_1:+16789786 | Msa0198190:CDS |
| CATCCCACATATGCTGATTC+CGG | 0.410533 | 2_1:-16791126 | None:intergenic |
| CCTTGTACTCGTTGCTTCAC+TGG | 0.417197 | 2_1:+16789738 | Msa0198190:CDS |
| GCCCTTCCATGTGGTTGGCT+GGG | 0.419543 | 2_1:+16789791 | Msa0198190:CDS |
| TAGTGACAGATATGAAGTTT+TGG | 0.426906 | 2_1:+16790177 | Msa0198190:CDS |
| ATCTAACTAATATCTGGTTT+AGG | 0.428522 | 2_1:+16791064 | Msa0198190:CDS |
| GGCTTTGTTATAATAATGGT+TGG | 0.430539 | 2_1:+16789835 | Msa0198190:CDS |
| GCTGCAATGATTAGGCTTGC+TGG | 0.438803 | 2_1:+16790068 | Msa0198190:CDS |
| AAGAAGCTGCCTCTGTTTCT+GGG | 0.441331 | 2_1:+16790947 | Msa0198190:CDS |
| ATGTAAGACCTTTCATTTCA+AGG | 0.442413 | 2_1:-16790999 | None:intergenic |
| TGTAAGACCTTTCATTTCAA+GGG | 0.445718 | 2_1:-16790998 | None:intergenic |
| CTGCAATGATTAGGCTTGCT+GGG | 0.453237 | 2_1:+16790069 | Msa0198190:CDS |
| AGTTTCTCCAACTCCCTTGA+CGG | 0.459269 | 2_1:-16788550 | None:intergenic |
| GAGTGGGAAGCAACTGCCTT+TGG | 0.464665 | 2_1:+16789700 | Msa0198190:CDS |
| TAAAATGACTTACATGAATA+CGG | 0.467699 | 2_1:-16789909 | None:intergenic |
| CCCAGAATGCTGCAATGATT+AGG | 0.468506 | 2_1:+16790060 | Msa0198190:CDS |
| GTGGATGAAAGTCTCTATAT+GGG | 0.472228 | 2_1:+16788702 | Msa0198190:CDS |
| GTTGCTTCCCACTCCATCAC+TGG | 0.474508 | 2_1:-16789691 | None:intergenic |
| TTGAATATAGTGTAGGGAAA+AGG | 0.474878 | 2_1:-16790143 | None:intergenic |
| GCTTTGTTATAATAATGGTT+GGG | 0.475467 | 2_1:+16789836 | Msa0198190:CDS |
| TTCAACAACCCTTGGTTCAT+CGG | 0.477195 | 2_1:-16788629 | None:intergenic |
| CTGATTCCGGTAATTACAAA+GGG | 0.481298 | 2_1:-16791113 | None:intergenic |
| CCAGTGAAGCAACGAGTACA+AGG | 0.481760 | 2_1:-16789738 | None:intergenic |
| CACGGAACTTAAGTCCAATC+AGG | 0.482245 | 2_1:-16789885 | None:intergenic |
| AACTTAAGTCCAATCAGGTA+AGG | 0.484935 | 2_1:-16789880 | None:intergenic |
| GTAATTCTTGATTCAGCTTG+AGG | 0.488257 | 2_1:-16788667 | None:intergenic |
| ATAATGGTTGGGACAACCAT+TGG | 0.489908 | 2_1:+16789847 | Msa0198190:CDS |
| TGGATAATTATTAATTGCAT+AGG | 0.493560 | 2_1:-16791195 | None:intergenic |
| ACCAGAGCCGTCAAGGGAGT+TGG | 0.495487 | 2_1:+16788543 | Msa0198190:CDS |
| TGCTACTGATCCACAAAAGT+AGG | 0.496974 | 2_1:-16790201 | None:intergenic |
| AATCACTGGTCATCATGTTA+GGG | 0.497053 | 2_1:+16788576 | Msa0198190:CDS |
| ATTTCAGCTTCAACAACCCT+TGG | 0.497272 | 2_1:-16788637 | None:intergenic |
| ACGAGTACAAGGGCGAGAAC+TGG | 0.500813 | 2_1:-16789727 | None:intergenic |
| ATGATTAGGCTTGCTGGGGA+AGG | 0.501695 | 2_1:+16790074 | Msa0198190:CDS |
| ATTACCGGAATCAGCATATG+TGG | 0.502349 | 2_1:+16791122 | Msa0198190:exon |
| TAATGGTTGGGACAACCATT+GGG | 0.508872 | 2_1:+16789848 | Msa0198190:CDS |
| GCATAATTGAATATAGTGTA+GGG | 0.517652 | 2_1:-16790149 | None:intergenic |
| TTCTTTATCCAGTGATGGAG+TGG | 0.528968 | 2_1:+16789683 | Msa0198190:CDS |
| TTGTGGATCAGTAGCAGGAA+TGG | 0.529813 | 2_1:+16790208 | Msa0198190:CDS |
| GAATTACATCTTTCAAGTGG+TGG | 0.533418 | 2_1:+16788683 | Msa0198190:CDS |
| TGATGACACCAGAGCCGTCA+AGG | 0.538710 | 2_1:+16788536 | Msa0198190:CDS |
| GAAGCCAACAATGGTAATAA+CGG | 0.542235 | 2_1:-16790872 | None:intergenic |
| ATCCCAGCCAACCACATGGA+AGG | 0.542750 | 2_1:-16789793 | None:intergenic |
| GGCGAGAACTGGTCGGCCAA+AGG | 0.547361 | 2_1:-16789716 | None:intergenic |
| GCTGATTCCGGTAATTACAA+AGG | 0.550649 | 2_1:-16791114 | None:intergenic |
| TTGGAGAAACTTGAAATCAC+TGG | 0.559246 | 2_1:+16788562 | Msa0198190:CDS |
| AAGTTTCCCCTTGAAATGAA+AGG | 0.560851 | 2_1:+16790991 | Msa0198190:CDS |
| GTAGGTTCTTTATCCAGTGA+TGG | 0.563474 | 2_1:+16789678 | Msa0198190:intron |
| TGATTAGGCTTGCTGGGGAA+GGG | 0.564478 | 2_1:+16790075 | Msa0198190:CDS |
| CTGGTTTCATCAATTTCAAG+TGG | 0.564535 | 2_1:+16790100 | Msa0198190:CDS |
| CGGAATCAGCATATGTGGGA+TGG | 0.568940 | 2_1:+16791127 | Msa0198190:three_prime_UTR |
| AGCATAATTGAATATAGTGT+AGG | 0.570574 | 2_1:-16790150 | None:intergenic |
| TTCCTTCTGGCCCTTCCATG+TGG | 0.572407 | 2_1:+16789782 | Msa0198190:CDS |
| TAATAAACTCAAAATAGAAG+AGG | 0.577914 | 2_1:+16790918 | Msa0198190:CDS |
| GTAAGACCTTTCATTTCAAG+GGG | 0.580961 | 2_1:-16790997 | None:intergenic |
| GCTACTGATCCACAAAAGTA+GGG | 0.584812 | 2_1:-16790200 | None:intergenic |
| GTTTGGCTGATGCACAGTAT+GGG | 0.587091 | 2_1:+16790794 | Msa0198190:CDS |
| TCCCAGCCAACCACATGGAA+GGG | 0.587420 | 2_1:-16789792 | None:intergenic |
| TCTTTATCCAGTGATGGAGT+GGG | 0.589778 | 2_1:+16789684 | Msa0198190:CDS |
| TGCCATATCCGATGAACCAA+GGG | 0.592080 | 2_1:+16788621 | Msa0198190:CDS |
| CAAGAATTACATCTTTCAAG+TGG | 0.599182 | 2_1:+16788680 | Msa0198190:CDS |
| GACTTACATGAATACGGTCA+CGG | 0.599475 | 2_1:-16789903 | None:intergenic |
| AACCACATGGAAGGGCCAGA+AGG | 0.600513 | 2_1:-16789784 | None:intergenic |
| AGGGTTCAAAATTGGGAGAG+AGG | 0.613044 | 2_1:-16791094 | None:intergenic |
| ACTTAAGTCCAATCAGGTAA+GGG | 0.618923 | 2_1:-16789879 | None:intergenic |
| GATGACACCAGAGCCGTCAA+GGG | 0.622079 | 2_1:+16788537 | Msa0198190:CDS |
| ACTAGCATTCCCAGAAACAG+AGG | 0.622994 | 2_1:-16790956 | None:intergenic |
| TGGCTGATGCACAGTATGGG+AGG | 0.625311 | 2_1:+16790797 | Msa0198190:CDS |
| AATCATCCCAGCCAACCACA+TGG | 0.628943 | 2_1:-16789797 | None:intergenic |
| TTGCCATATCCGATGAACCA+AGG | 0.632917 | 2_1:+16788620 | Msa0198190:CDS |
| CGATTTCCACTGTGGTCATG+TGG | 0.634060 | 2_1:-16790822 | None:intergenic |
| CTAATCATTGCAGCATTCTG+GGG | 0.635065 | 2_1:-16790059 | None:intergenic |
| GGTTGGGACAACCATTGGGA+TGG | 0.637137 | 2_1:+16789852 | Msa0198190:CDS |
| ATCACTGGTCATCATGTTAG+GGG | 0.642390 | 2_1:+16788577 | Msa0198190:CDS |
| TTACCGGAATCAGCATATGT+GGG | 0.650553 | 2_1:+16791123 | Msa0198190:three_prime_UTR |
| GTAAGGGAGGACCATCCCAA+TGG | 0.657572 | 2_1:-16789863 | None:intergenic |
| TAAGTCCAATCAGGTAAGGG+AGG | 0.662695 | 2_1:-16789876 | None:intergenic |
| GTTGTATACGATTTCCACTG+TGG | 0.663400 | 2_1:-16790830 | None:intergenic |
| ATAAACAGTGAAGCCAACAA+TGG | 0.664914 | 2_1:-16790881 | None:intergenic |
| TGTCATCATTGAGATGCCAG+AGG | 0.674381 | 2_1:-16788521 | None:intergenic |
| TGCAATGATTAGGCTTGCTG+GGG | 0.676509 | 2_1:+16790070 | Msa0198190:CDS |
| TGGATGAAAGTCTCTATATG+GGG | 0.676560 | 2_1:+16788703 | Msa0198190:CDS |
| GTCATCATTGAGATGCCAGA+GGG | 0.677520 | 2_1:-16788520 | None:intergenic |
| TCACTGGTCATCATGTTAGG+GGG | 0.683003 | 2_1:+16788578 | Msa0198190:CDS |
| CCATTATTATAACAAAGCCA+AGG | 0.686194 | 2_1:-16789831 | None:intergenic |
| GTACAAGGGCGAGAACTGGT+CGG | 0.687427 | 2_1:-16789723 | None:intergenic |
| CAGTGAAGCAACGAGTACAA+GGG | 0.688514 | 2_1:-16789737 | None:intergenic |
| GAGGCACCACATGACCACAG+TGG | 0.767959 | 2_1:+16790816 | Msa0198190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATTCAAAAAATTTAG+AGG | - | chr2_1:16789960-16789979 | None:intergenic | 10.0% |
| !!! | TTAATCTTTTTATTAATAGA+TGG | + | chr2_1:16790708-16790727 | Msa0198190:intron | 10.0% |
| !!! | GATAAATTATTTTTTGATTG+TGG | + | chr2_1:16788386-16788405 | Msa0198190:intron | 15.0% |
| !!! | CTTTTGTGATAATAAAATAT+TGG | - | chr2_1:16788985-16789004 | None:intergenic | 15.0% |
| !!! | CAATATTTTATTATCACAAA+AGG | + | chr2_1:16788983-16789002 | Msa0198190:intron | 15.0% |
| !! | TTTAATTGTTGAAGAATATT+AGG | + | chr2_1:16789139-16789158 | Msa0198190:intron | 15.0% |
| !! | TTAATTGTTGAAGAATATTA+GGG | + | chr2_1:16789140-16789159 | Msa0198190:intron | 15.0% |
| !! | GTAAACAAGAAAAAAAAAAT+GGG | - | chr2_1:16789559-16789578 | None:intergenic | 15.0% |
| !! | TGTAAACAAGAAAAAAAAAA+TGG | - | chr2_1:16789560-16789579 | None:intergenic | 15.0% |
| !! | AATTAATAATACTGGAAATA+AGG | - | chr2_1:16789764-16789783 | None:intergenic | 15.0% |
| !! | GTTAAAAATATTCTCAAATA+AGG | - | chr2_1:16790364-16790383 | None:intergenic | 15.0% |
| !! | ATAATTGTGTTAATTTCATT+TGG | - | chr2_1:16790443-16790462 | None:intergenic | 15.0% |
| !!! | ACTTTTGTTACTTTATTTTT+TGG | + | chr2_1:16790663-16790682 | Msa0198190:intron | 15.0% |
| !! | CAAGAATTTGTGTATAAAAA+TGG | + | chr2_1:16788193-16788212 | Msa0198190:intron | 20.0% |
| !! | AATTTGTGTATAAAAATGGA+GGG | + | chr2_1:16788197-16788216 | Msa0198190:intron | 20.0% |
| !! | TAATTGTTGAAGAATATTAG+GGG | + | chr2_1:16789141-16789160 | Msa0198190:intron | 20.0% |
| !! | CTATGTAATGTAATGTAATA+AGG | + | chr2_1:16789485-16789504 | Msa0198190:intron | 20.0% |
| !! | TATGTTAAATAAACTTGAAG+AGG | + | chr2_1:16789622-16789641 | Msa0198190:intron | 20.0% |
| !! | TAAAATGACTTACATGAATA+CGG | - | chr2_1:16789912-16789931 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGATTTACATG+AGG | - | chr2_1:16790329-16790348 | None:intergenic | 20.0% |
| !! | AACCATAGAAAATATTAGAA+TGG | - | chr2_1:16790528-16790547 | None:intergenic | 20.0% |
| !!! | ATTCTAATATTTTCTATGGT+TGG | + | chr2_1:16790527-16790546 | Msa0198190:intron | 20.0% |
| !! | TCTCATATTCATATATATTG+TGG | - | chr2_1:16790595-16790614 | None:intergenic | 20.0% |
| !! | CCATTAACATATAAGAAAAA+AGG | - | chr2_1:16790743-16790762 | None:intergenic | 20.0% |
| !!! | CCTTTTTTCTTATATGTTAA+TGG | + | chr2_1:16790740-16790759 | Msa0198190:intron | 20.0% |
| !! | TAATAAACTCAAAATAGAAG+AGG | + | chr2_1:16790918-16790937 | Msa0198190:CDS | 20.0% |
| !! | ACACTAATGTCATAATAAAT+TGG | - | chr2_1:16791032-16791051 | None:intergenic | 20.0% |
| !! | TTATGTATCTAACTAATATC+TGG | + | chr2_1:16791058-16791077 | Msa0198190:CDS | 20.0% |
| !! | TGGATAATTATTAATTGCAT+AGG | - | chr2_1:16791198-16791217 | None:intergenic | 20.0% |
| !!! | ATTTTTTACTTTCCTCTTCT+AGG | + | chr2_1:16788129-16788148 | Msa0198190:intron | 25.0% |
| !!! | TTTTTTACTTTCCTCTTCTA+GGG | + | chr2_1:16788130-16788149 | Msa0198190:intron | 25.0% |
| !! | GAATAGGTTTTTGTTAATTG+TGG | + | chr2_1:16788167-16788186 | Msa0198190:intron | 25.0% |
| ! | GAATTTGTGTATAAAAATGG+AGG | + | chr2_1:16788196-16788215 | Msa0198190:intron | 25.0% |
| !! | ATCTAATCATTGTGAAGTTT+TGG | + | chr2_1:16788237-16788256 | Msa0198190:intron | 25.0% |
| !! | TCTAATCATTGTGAAGTTTT+GGG | + | chr2_1:16788238-16788257 | Msa0198190:intron | 25.0% |
| ! | TATCATAAAGACTAAGACTA+TGG | - | chr2_1:16788370-16788389 | None:intergenic | 25.0% |
| !! | TTTTCTTGTTCTATCTTCAT+CGG | + | chr2_1:16788834-16788853 | Msa0198190:intron | 25.0% |
| !! | TCACAAAAGGATTTGAATTT+TGG | + | chr2_1:16788996-16789015 | Msa0198190:intron | 25.0% |
| !!! | AATTTTGGTAATATGTTCCT+TGG | + | chr2_1:16789011-16789030 | Msa0198190:intron | 25.0% |
| ! | TATGTTTCATCACTTTATGT+GGG | - | chr2_1:16789301-16789320 | None:intergenic | 25.0% |
| ! | ACAAGAAAAAAAAAATGGGA+GGG | - | chr2_1:16789555-16789574 | None:intergenic | 25.0% |
| ! | AACAAGAAAAAAAAAATGGG+AGG | - | chr2_1:16789556-16789575 | None:intergenic | 25.0% |
| !! | AACATTGACATTTTTATCGT+AGG | + | chr2_1:16789660-16789679 | Msa0198190:intron | 25.0% |
| !! | GCTTTGTTATAATAATGGTT+GGG | + | chr2_1:16789836-16789855 | Msa0198190:CDS | 25.0% |
| ! | GCATAATTGAATATAGTGTA+GGG | - | chr2_1:16790152-16790171 | None:intergenic | 25.0% |
| ! | AGCATAATTGAATATAGTGT+AGG | - | chr2_1:16790153-16790172 | None:intergenic | 25.0% |
| ! | AATAAACAACACATCTTACT+TGG | + | chr2_1:16790501-16790520 | Msa0198190:intron | 25.0% |
| !! | GACCATTCTAATATTTTCTA+TGG | + | chr2_1:16790523-16790542 | Msa0198190:intron | 25.0% |
| ! | ATTGTGGTCAAACAAAATTT+AGG | - | chr2_1:16790579-16790598 | None:intergenic | 25.0% |
| !! | ATCTAACTAATATCTGGTTT+AGG | + | chr2_1:16791064-16791083 | Msa0198190:CDS | 25.0% |
| ! | ATTACAAAGGGTTCAAAATT+GGG | - | chr2_1:16791104-16791123 | None:intergenic | 25.0% |
| ! | AATTACAAAGGGTTCAAAAT+TGG | - | chr2_1:16791105-16791124 | None:intergenic | 25.0% |
| GGTATATTAGGATGTTGAAT+AGG | + | chr2_1:16788151-16788170 | Msa0198190:intron | 30.0% | |
| ! | CTAATCATTGTGAAGTTTTG+GGG | + | chr2_1:16788239-16788258 | Msa0198190:intron | 30.0% |
| TTAGATATGCACCTTGAATT+TGG | + | chr2_1:16788445-16788464 | Msa0198190:intron | 30.0% | |
| CAAGAATTACATCTTTCAAG+TGG | + | chr2_1:16788680-16788699 | Msa0198190:CDS | 30.0% | |
| TTTCACTTCTTCTAGTCAAA+TGG | + | chr2_1:16788743-16788762 | Msa0198190:intron | 30.0% | |
| TTCACTTCTTCTAGTCAAAT+GGG | + | chr2_1:16788744-16788763 | Msa0198190:intron | 30.0% | |
| ! | AGTACCTTTTCAAAAGCAAA+GGG | - | chr2_1:16788775-16788794 | None:intergenic | 30.0% |
| ! | AAGTACCTTTTCAAAAGCAA+AGG | - | chr2_1:16788776-16788795 | None:intergenic | 30.0% |
| GCAGAAAATTATGAAGTAAG+AGG | - | chr2_1:16788799-16788818 | None:intergenic | 30.0% | |
| ! | CTTACTTCATAATTTTCTGC+TGG | + | chr2_1:16788799-16788818 | Msa0198190:intron | 30.0% |
| ! | TTAATCAATACAGTGCTGTT+TGG | + | chr2_1:16788888-16788907 | Msa0198190:intron | 30.0% |
| GTGTCAGATTTCTATGTAAT+TGG | + | chr2_1:16789033-16789052 | Msa0198190:intron | 30.0% | |
| ! | TCTAACACTCACTCTTTTAT+TGG | + | chr2_1:16789238-16789257 | Msa0198190:intron | 30.0% |
| ! | CTAACACTCACTCTTTTATT+GGG | + | chr2_1:16789239-16789258 | Msa0198190:intron | 30.0% |
| CGAGTCTTACAATTTGAAAA+TGG | + | chr2_1:16789273-16789292 | Msa0198190:intron | 30.0% | |
| GTATGTTTCATCACTTTATG+TGG | - | chr2_1:16789302-16789321 | None:intergenic | 30.0% | |
| TCTAACACTCACTCATTTAT+TGG | - | chr2_1:16789336-16789355 | None:intergenic | 30.0% | |
| ATTCTTCTGTCAACATTAGT+TGG | + | chr2_1:16789384-16789403 | Msa0198190:intron | 30.0% | |
| TTAAATAAACTTGAAGAGGC+TGG | + | chr2_1:16789626-16789645 | Msa0198190:intron | 30.0% | |
| CCAGAAGGAATTAATAATAC+TGG | - | chr2_1:16789772-16789791 | None:intergenic | 30.0% | |
| CCAGTATTATTAATTCCTTC+TGG | + | chr2_1:16789769-16789788 | Msa0198190:CDS | 30.0% | |
| CCATTATTATAACAAAGCCA+AGG | - | chr2_1:16789834-16789853 | None:intergenic | 30.0% | |
| !! | CCTTGGCTTTGTTATAATAA+TGG | + | chr2_1:16789831-16789850 | Msa0198190:CDS | 30.0% |
| !! | GGCTTTGTTATAATAATGGT+TGG | + | chr2_1:16789835-16789854 | Msa0198190:CDS | 30.0% |
| TTGAATATAGTGTAGGGAAA+AGG | - | chr2_1:16790146-16790165 | None:intergenic | 30.0% | |
| ! | TAGTGACAGATATGAAGTTT+TGG | + | chr2_1:16790177-16790196 | Msa0198190:CDS | 30.0% |
| TAGATGTAGATAAAAGCTTC+TGG | - | chr2_1:16790236-16790255 | None:intergenic | 30.0% | |
| ! | AAGCTTTTATCTACATCTAC+AGG | + | chr2_1:16790237-16790256 | Msa0198190:CDS | 30.0% |
| TGATATGTTTAGATAGTTGC+AGG | + | chr2_1:16790283-16790302 | Msa0198190:intron | 30.0% | |
| TGGTAGATTGATAAAGAGTT+TGG | + | chr2_1:16790777-16790796 | Msa0198190:CDS | 30.0% | |
| TGTAAGACCTTTCATTTCAA+GGG | - | chr2_1:16791001-16791020 | None:intergenic | 30.0% | |
| ATGTAAGACCTTTCATTTCA+AGG | - | chr2_1:16791002-16791021 | None:intergenic | 30.0% | |
| TTTGAACCCTTTGTAATTAC+CGG | + | chr2_1:16791107-16791126 | Msa0198190:exon | 30.0% | |
| !! | TTCCTCTTCTAGGGTATATT+AGG | + | chr2_1:16788139-16788158 | Msa0198190:intron | 35.0% |
| ATCCTAATATACCCTAGAAG+AGG | - | chr2_1:16788144-16788163 | None:intergenic | 35.0% | |
| TTTAAACCATCCGATTCCTA+GGG | + | chr2_1:16788262-16788281 | Msa0198190:intron | 35.0% | |
| ! | TGGTAATTTGAAGTTCAGTC+TGG | + | chr2_1:16788296-16788315 | Msa0198190:intron | 35.0% |
| ! | TAATTTGAAGTTCAGTCTGG+AGG | + | chr2_1:16788299-16788318 | Msa0198190:intron | 35.0% |
| AGGTAAGTAAAGTCTGTTCA+AGG | + | chr2_1:16788319-16788338 | Msa0198190:intron | 35.0% | |
| AGACTACGATTCCAAATTCA+AGG | - | chr2_1:16788459-16788478 | None:intergenic | 35.0% | |
| TTGGAGAAACTTGAAATCAC+TGG | + | chr2_1:16788562-16788581 | Msa0198190:CDS | 35.0% | |
| AAATCACTGGTCATCATGTT+AGG | + | chr2_1:16788575-16788594 | Msa0198190:CDS | 35.0% | |
| AATCACTGGTCATCATGTTA+GGG | + | chr2_1:16788576-16788595 | Msa0198190:CDS | 35.0% | |
| GTAATTCTTGATTCAGCTTG+AGG | - | chr2_1:16788670-16788689 | None:intergenic | 35.0% | |
| ! | GAATTACATCTTTCAAGTGG+TGG | + | chr2_1:16788683-16788702 | Msa0198190:CDS | 35.0% |
| GTGGATGAAAGTCTCTATAT+GGG | + | chr2_1:16788702-16788721 | Msa0198190:CDS | 35.0% | |
| TGGATGAAAGTCTCTATATG+GGG | + | chr2_1:16788703-16788722 | Msa0198190:CDS | 35.0% | |
| TCACTTCTTCTAGTCAAATG+GGG | + | chr2_1:16788745-16788764 | Msa0198190:intron | 35.0% | |
| ! | TTCATAATTTTCTGCTGGCA+CGG | + | chr2_1:16788804-16788823 | Msa0198190:intron | 35.0% |
| TTCTATCTTCATCGGTGATT+TGG | + | chr2_1:16788842-16788861 | Msa0198190:intron | 35.0% | |
| TCTATCTTCATCGGTGATTT+GGG | + | chr2_1:16788843-16788862 | Msa0198190:intron | 35.0% | |
| TACATAGAAATCTGACACCA+AGG | - | chr2_1:16789031-16789050 | None:intergenic | 35.0% | |
| AAAGCATAGTAAACTGTTCG+CGG | - | chr2_1:16789122-16789141 | None:intergenic | 35.0% | |
| !! | TTTCGATTATGAGAAGTGCT+TGG | + | chr2_1:16789413-16789432 | Msa0198190:intron | 35.0% |
| AAAAAAAAAATGGGAGGGTG+AGG | - | chr2_1:16789550-16789569 | None:intergenic | 35.0% | |
| !!! | ATGATTTTTGGTTATGGCCT+TGG | + | chr2_1:16789814-16789833 | Msa0198190:CDS | 35.0% |
| ACTTAAGTCCAATCAGGTAA+GGG | - | chr2_1:16789882-16789901 | None:intergenic | 35.0% | |
| AACTTAAGTCCAATCAGGTA+AGG | - | chr2_1:16789883-16789902 | None:intergenic | 35.0% | |
| AATTTAGAGGACTAGACTTG+TGG | - | chr2_1:16789947-16789966 | None:intergenic | 35.0% | |
| TTCAGCAATGGTTAGAGAAA+TGG | + | chr2_1:16790036-16790055 | Msa0198190:intron | 35.0% | |
| CTGGTTTCATCAATTTCAAG+TGG | + | chr2_1:16790100-16790119 | Msa0198190:CDS | 35.0% | |
| GCAAATATGACTGAGTCTAA+AGG | + | chr2_1:16790636-16790655 | Msa0198190:intron | 35.0% | |
| TAATGGTCAATATTGTGCAG+TGG | + | chr2_1:16790757-16790776 | Msa0198190:intron | 35.0% | |
| ATTGCCGTTATTACCATTGT+TGG | + | chr2_1:16790868-16790887 | Msa0198190:CDS | 35.0% | |
| GAAGCCAACAATGGTAATAA+CGG | - | chr2_1:16790875-16790894 | None:intergenic | 35.0% | |
| ATAAACAGTGAAGCCAACAA+TGG | - | chr2_1:16790884-16790903 | None:intergenic | 35.0% | |
| GCTTCACTGTTTATGCAAAA+AGG | + | chr2_1:16790890-16790909 | Msa0198190:CDS | 35.0% | |
| AAGTTTCCCCTTGAAATGAA+AGG | + | chr2_1:16790991-16791010 | Msa0198190:CDS | 35.0% | |
| GTAAGACCTTTCATTTCAAG+GGG | - | chr2_1:16791000-16791019 | None:intergenic | 35.0% | |
| CTGATTCCGGTAATTACAAA+GGG | - | chr2_1:16791116-16791135 | None:intergenic | 35.0% | |
| GTTTAAACCATCCGATTCCT+AGG | + | chr2_1:16788261-16788280 | Msa0198190:intron | 40.0% | |
| TTAAACCATCCGATTCCTAG+GGG | + | chr2_1:16788263-16788282 | Msa0198190:intron | 40.0% | |
| ATCACTGGTCATCATGTTAG+GGG | + | chr2_1:16788577-16788596 | Msa0198190:CDS | 40.0% | |
| TTCAACAACCCTTGGTTCAT+CGG | - | chr2_1:16788632-16788651 | None:intergenic | 40.0% | |
| ATTTCAGCTTCAACAACCCT+TGG | - | chr2_1:16788640-16788659 | None:intergenic | 40.0% | |
| GGTGGATGAAAGTCTCTATA+TGG | + | chr2_1:16788701-16788720 | Msa0198190:CDS | 40.0% | |
| !! | AGTGCCCTTTGCTTTTGAAA+AGG | + | chr2_1:16788768-16788787 | Msa0198190:intron | 40.0% |
| CTTCAGAATAATGACACCAC+TGG | + | chr2_1:16789437-16789456 | Msa0198190:intron | 40.0% | |
| ! | ATATTTTCCTGCCAGTCAGT+AGG | + | chr2_1:16789513-16789532 | Msa0198190:intron | 40.0% |
| AAGCAACAATTCCTACTGAC+TGG | - | chr2_1:16789527-16789546 | None:intergenic | 40.0% | |
| GTAGGTTCTTTATCCAGTGA+TGG | + | chr2_1:16789678-16789697 | Msa0198190:intron | 40.0% | |
| ! | TTCTTTATCCAGTGATGGAG+TGG | + | chr2_1:16789683-16789702 | Msa0198190:CDS | 40.0% |
| ! | TCTTTATCCAGTGATGGAGT+GGG | + | chr2_1:16789684-16789703 | Msa0198190:CDS | 40.0% |
| !!! | GCTGGGATGATTTTTGGTTA+TGG | + | chr2_1:16789808-16789827 | Msa0198190:CDS | 40.0% |
| ATAATGGTTGGGACAACCAT+TGG | + | chr2_1:16789847-16789866 | Msa0198190:CDS | 40.0% | |
| TAATGGTTGGGACAACCATT+GGG | + | chr2_1:16789848-16789867 | Msa0198190:CDS | 40.0% | |
| GACTTACATGAATACGGTCA+CGG | - | chr2_1:16789906-16789925 | None:intergenic | 40.0% | |
| ! | CTTTGTTGCTTGTTCAGCAA+TGG | + | chr2_1:16790024-16790043 | Msa0198190:intron | 40.0% |
| CTAATCATTGCAGCATTCTG+GGG | - | chr2_1:16790062-16790081 | None:intergenic | 40.0% | |
| CCTAATCATTGCAGCATTCT+GGG | - | chr2_1:16790063-16790082 | None:intergenic | 40.0% | |
| !! | AAGTTTTGGCCCTACTTTTG+TGG | + | chr2_1:16790191-16790210 | Msa0198190:CDS | 40.0% |
| GCTACTGATCCACAAAAGTA+GGG | - | chr2_1:16790203-16790222 | None:intergenic | 40.0% | |
| TGCTACTGATCCACAAAAGT+AGG | - | chr2_1:16790204-16790223 | None:intergenic | 40.0% | |
| ! | TACTTTTGTGGATCAGTAGC+AGG | + | chr2_1:16790203-16790222 | Msa0198190:CDS | 40.0% |
| CTTGCTCTATCTTCCTAGAA+GGG | - | chr2_1:16790418-16790437 | None:intergenic | 40.0% | |
| TCTTGCTCTATCTTCCTAGA+AGG | - | chr2_1:16790419-16790438 | None:intergenic | 40.0% | |
| GTTGTATACGATTTCCACTG+TGG | - | chr2_1:16790833-16790852 | None:intergenic | 40.0% | |
| ! | GCTGATTCCGGTAATTACAA+AGG | - | chr2_1:16791117-16791136 | None:intergenic | 40.0% |
| ATTACCGGAATCAGCATATG+TGG | + | chr2_1:16791122-16791141 | Msa0198190:exon | 40.0% | |
| TTACCGGAATCAGCATATGT+GGG | + | chr2_1:16791123-16791142 | Msa0198190:three_prime_UTR | 40.0% | |
| TTCAAGGATTGTTCCAGCCA+GGG | + | chr2_1:16788335-16788354 | Msa0198190:intron | 45.0% | |
| GACTATGGTTTCACAATCCC+TGG | - | chr2_1:16788355-16788374 | None:intergenic | 45.0% | |
| ! | GTTTCATTTTCACAGCCCTC+TGG | + | chr2_1:16788505-16788524 | Msa0198190:intron | 45.0% |
| GTCATCATTGAGATGCCAGA+GGG | - | chr2_1:16788523-16788542 | None:intergenic | 45.0% | |
| TGTCATCATTGAGATGCCAG+AGG | - | chr2_1:16788524-16788543 | None:intergenic | 45.0% | |
| AGTTTCTCCAACTCCCTTGA+CGG | - | chr2_1:16788553-16788572 | None:intergenic | 45.0% | |
| TCACTGGTCATCATGTTAGG+GGG | + | chr2_1:16788578-16788597 | Msa0198190:CDS | 45.0% | |
| !! | GGGGGAGTACTGAATATGTT+AGG | + | chr2_1:16788596-16788615 | Msa0198190:CDS | 45.0% |
| TTGCCATATCCGATGAACCA+AGG | + | chr2_1:16788620-16788639 | Msa0198190:CDS | 45.0% | |
| TGCCATATCCGATGAACCAA+GGG | + | chr2_1:16788621-16788640 | Msa0198190:CDS | 45.0% | |
| AACCCTTGGTTCATCGGATA+TGG | - | chr2_1:16788626-16788645 | None:intergenic | 45.0% | |
| TCTGCGAAACAACAAACCAG+TGG | - | chr2_1:16789456-16789475 | None:intergenic | 45.0% | |
| ! | AACAATTCCTACTGACTGGC+AGG | - | chr2_1:16789523-16789542 | None:intergenic | 45.0% |
| CAGTGAAGCAACGAGTACAA+GGG | - | chr2_1:16789740-16789759 | None:intergenic | 45.0% | |
| !! | TGGTTGGCTGGGATGATTTT+TGG | + | chr2_1:16789802-16789821 | Msa0198190:CDS | 45.0% |
| TAAGTCCAATCAGGTAAGGG+AGG | - | chr2_1:16789879-16789898 | None:intergenic | 45.0% | |
| CACGGAACTTAAGTCCAATC+AGG | - | chr2_1:16789888-16789907 | None:intergenic | 45.0% | |
| CCCAGAATGCTGCAATGATT+AGG | + | chr2_1:16790060-16790079 | Msa0198190:CDS | 45.0% | |
| GCCTAATCATTGCAGCATTC+TGG | - | chr2_1:16790064-16790083 | None:intergenic | 45.0% | |
| ! | CTGCAATGATTAGGCTTGCT+GGG | + | chr2_1:16790069-16790088 | Msa0198190:CDS | 45.0% |
| !! | TGCAATGATTAGGCTTGCTG+GGG | + | chr2_1:16790070-16790089 | Msa0198190:CDS | 45.0% |
| TTGTGGATCAGTAGCAGGAA+TGG | + | chr2_1:16790208-16790227 | Msa0198190:CDS | 45.0% | |
| GAAGGGTGATAGCTAGAGAA+GGG | - | chr2_1:16790401-16790420 | None:intergenic | 45.0% | |
| AGAAGGGTGATAGCTAGAGA+AGG | - | chr2_1:16790402-16790421 | None:intergenic | 45.0% | |
| TCTCTAGCTATCACCCTTCT+AGG | + | chr2_1:16790402-16790421 | Msa0198190:intron | 45.0% | |
| AGTTTGGCTGATGCACAGTA+TGG | + | chr2_1:16790793-16790812 | Msa0198190:CDS | 45.0% | |
| GTTTGGCTGATGCACAGTAT+GGG | + | chr2_1:16790794-16790813 | Msa0198190:CDS | 45.0% | |
| AACAGAGGCAGCTTCTTCAT+TGG | - | chr2_1:16790944-16790963 | None:intergenic | 45.0% | |
| ! | AAGAAGCTGCCTCTGTTTCT+GGG | + | chr2_1:16790947-16790966 | Msa0198190:CDS | 45.0% |
| ACTAGCATTCCCAGAAACAG+AGG | - | chr2_1:16790959-16790978 | None:intergenic | 45.0% | |
| AGGGTTCAAAATTGGGAGAG+AGG | - | chr2_1:16791097-16791116 | None:intergenic | 45.0% | |
| !! | CATCCCACATATGCTGATTC+CGG | - | chr2_1:16791129-16791148 | None:intergenic | 45.0% |
| CATCCGATTCCTAGGGGAAA+GGG | + | chr2_1:16788269-16788288 | Msa0198190:intron | 50.0% | |
| ATCCGATTCCTAGGGGAAAG+GGG | + | chr2_1:16788270-16788289 | Msa0198190:intron | 50.0% | |
| GTTCAAGGATTGTTCCAGCC+AGG | + | chr2_1:16788334-16788353 | Msa0198190:intron | 50.0% | |
| ATGGTTTCACAATCCCTGGC+TGG | - | chr2_1:16788351-16788370 | None:intergenic | 50.0% | |
| !! | ACAGTGCTGTTTGGCTGTCA+TGG | + | chr2_1:16788897-16788916 | Msa0198190:intron | 50.0% |
| CCAGTGAAGCAACGAGTACA+AGG | - | chr2_1:16789741-16789760 | None:intergenic | 50.0% | |
| CCTTGTACTCGTTGCTTCAC+TGG | + | chr2_1:16789738-16789757 | Msa0198190:CDS | 50.0% | |
| AATCATCCCAGCCAACCACA+TGG | - | chr2_1:16789800-16789819 | None:intergenic | 50.0% | |
| ATGGTCCTCCCTTACCTGAT+TGG | + | chr2_1:16789871-16789890 | Msa0198190:CDS | 50.0% | |
| GCTGCAATGATTAGGCTTGC+TGG | + | chr2_1:16790068-16790087 | Msa0198190:CDS | 50.0% | |
| !! | ATGATTAGGCTTGCTGGGGA+AGG | + | chr2_1:16790074-16790093 | Msa0198190:CDS | 50.0% |
| !! | TGATTAGGCTTGCTGGGGAA+GGG | + | chr2_1:16790075-16790094 | Msa0198190:CDS | 50.0% |
| GGTGATAGCTAGAGAAGGGA+TGG | - | chr2_1:16790397-16790416 | None:intergenic | 50.0% | |
| CGATTTCCACTGTGGTCATG+TGG | - | chr2_1:16790825-16790844 | None:intergenic | 50.0% | |
| GAAGAAGCTGCCTCTGTTTC+TGG | + | chr2_1:16790946-16790965 | Msa0198190:CDS | 50.0% | |
| CGGAATCAGCATATGTGGGA+TGG | + | chr2_1:16791127-16791146 | Msa0198190:three_prime_UTR | 50.0% | |
| CCTTTCCCCTAGGAATCGGA+TGG | - | chr2_1:16788271-16788290 | None:intergenic | 55.0% | |
| CCATCCGATTCCTAGGGGAA+AGG | + | chr2_1:16788268-16788287 | Msa0198190:intron | 55.0% | |
| TGCCCCTTTCCCCTAGGAAT+CGG | - | chr2_1:16788275-16788294 | None:intergenic | 55.0% | |
| TGATGACACCAGAGCCGTCA+AGG | + | chr2_1:16788536-16788555 | Msa0198190:CDS | 55.0% | |
| GATGACACCAGAGCCGTCAA+GGG | + | chr2_1:16788537-16788556 | Msa0198190:CDS | 55.0% | |
| GTTGCTTCCCACTCCATCAC+TGG | - | chr2_1:16789694-16789713 | None:intergenic | 55.0% | |
| GAGTGGGAAGCAACTGCCTT+TGG | + | chr2_1:16789700-16789719 | Msa0198190:CDS | 55.0% | |
| GTACAAGGGCGAGAACTGGT+CGG | - | chr2_1:16789726-16789745 | None:intergenic | 55.0% | |
| ACGAGTACAAGGGCGAGAAC+TGG | - | chr2_1:16789730-16789749 | None:intergenic | 55.0% | |
| TTCCTTCTGGCCCTTCCATG+TGG | + | chr2_1:16789782-16789801 | Msa0198190:CDS | 55.0% | |
| AACCACATGGAAGGGCCAGA+AGG | - | chr2_1:16789787-16789806 | None:intergenic | 55.0% | |
| TTCTGGCCCTTCCATGTGGT+TGG | + | chr2_1:16789786-16789805 | Msa0198190:CDS | 55.0% | |
| TCCCAGCCAACCACATGGAA+GGG | - | chr2_1:16789795-16789814 | None:intergenic | 55.0% | |
| ATCCCAGCCAACCACATGGA+AGG | - | chr2_1:16789796-16789815 | None:intergenic | 55.0% | |
| GGTTGGGACAACCATTGGGA+TGG | + | chr2_1:16789852-16789871 | Msa0198190:CDS | 55.0% | |
| GTAAGGGAGGACCATCCCAA+TGG | - | chr2_1:16789866-16789885 | None:intergenic | 55.0% | |
| TGGCTGATGCACAGTATGGG+AGG | + | chr2_1:16790797-16790816 | Msa0198190:CDS | 55.0% | |
| ! | TTCCTAGGGGAAAGGGGCAC+TGG | + | chr2_1:16788276-16788295 | Msa0198190:intron | 60.0% |
| TACCAGTGCCCCTTTCCCCT+AGG | - | chr2_1:16788281-16788300 | None:intergenic | 60.0% | |
| ACCAGAGCCGTCAAGGGAGT+TGG | + | chr2_1:16788543-16788562 | Msa0198190:CDS | 60.0% | |
| TCCAACTCCCTTGACGGCTC+TGG | - | chr2_1:16788547-16788566 | None:intergenic | 60.0% | |
| ! | GCCCTTCCATGTGGTTGGCT+GGG | + | chr2_1:16789791-16789810 | Msa0198190:CDS | 60.0% |
| ! | GAGGCACCACATGACCACAG+TGG | + | chr2_1:16790816-16790835 | Msa0198190:CDS | 60.0% |
| GGCGAGAACTGGTCGGCCAA+AGG | - | chr2_1:16789719-16789738 | None:intergenic | 65.0% | |
| GGCCCTTCCATGTGGTTGGC+TGG | + | chr2_1:16789790-16789809 | Msa0198190:CDS | 65.0% | |
| !! | GGCTTGCTGGGGAAGGGAGC+TGG | + | chr2_1:16790081-16790100 | Msa0198190:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 16788100 | 16791219 | 16788100 | ID=Msa0198190;Name=Msa0198190 |
| chr2_1 | mRNA | 16788100 | 16791219 | 16788100 | ID=Msa0198190-mRNA-1;Parent=Msa0198190;Name=Msa0198190-mRNA-1;_AED=0.09;_eAED=0.11;_QI=23|0.5|0.6|0.8|0.5|0.6|5|97|340 |
| chr2_1 | exon | 16788100 | 16788107 | 16788100 | ID=Msa0198190-mRNA-1:exon:6962;Parent=Msa0198190-mRNA-1 |
| chr2_1 | exon | 16788520 | 16788756 | 16788520 | ID=Msa0198190-mRNA-1:exon:6963;Parent=Msa0198190-mRNA-1 |
| chr2_1 | exon | 16789682 | 16789918 | 16789682 | ID=Msa0198190-mRNA-1:exon:6964;Parent=Msa0198190-mRNA-1 |
| chr2_1 | exon | 16790041 | 16790258 | 16790041 | ID=Msa0198190-mRNA-1:exon:6965;Parent=Msa0198190-mRNA-1 |
| chr2_1 | exon | 16790777 | 16791219 | 16790777 | ID=Msa0198190-mRNA-1:exon:6966;Parent=Msa0198190-mRNA-1 |
| chr2_1 | five_prime_UTR | 16788100 | 16788107 | 16788100 | ID=Msa0198190-mRNA-1:five_prime_utr;Parent=Msa0198190-mRNA-1 |
| chr2_1 | five_prime_UTR | 16788520 | 16788534 | 16788520 | ID=Msa0198190-mRNA-1:five_prime_utr;Parent=Msa0198190-mRNA-1 |
| chr2_1 | CDS | 16788535 | 16788756 | 16788535 | ID=Msa0198190-mRNA-1:cds;Parent=Msa0198190-mRNA-1 |
| chr2_1 | CDS | 16789682 | 16789918 | 16789682 | ID=Msa0198190-mRNA-1:cds;Parent=Msa0198190-mRNA-1 |
| chr2_1 | CDS | 16790041 | 16790258 | 16790041 | ID=Msa0198190-mRNA-1:cds;Parent=Msa0198190-mRNA-1 |
| chr2_1 | CDS | 16790777 | 16791122 | 16790777 | ID=Msa0198190-mRNA-1:cds;Parent=Msa0198190-mRNA-1 |
| chr2_1 | three_prime_UTR | 16791123 | 16791219 | 16791123 | ID=Msa0198190-mRNA-1:three_prime_utr;Parent=Msa0198190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
