AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138410 MtrunA17_Chr2g0291431 98.718 312 4 0 1 312 1 312 0.0 628
Msa0138410 MtrunA17_Chr5g0398451 43.644 236 133 0 56 291 77 312 2.31e-75 233
Msa0138410 MtrunA17_Chr4g0056711 43.704 270 149 3 25 291 38 307 4.41e-73 228
Msa0138410 MtrunA17_Chr3g0109441 90.278 72 7 0 176 247 1 72 2.14e-41 138
Msa0138410 MtrunA17_Chr4g0065691 27.391 230 159 6 84 311 31 254 1.78e-16 78.2
Msa0138410 MtrunA17_Chr4g0014341 34.074 135 83 3 106 238 149 279 9.83e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138410 AT2G02370.2 64.667 300 105 1 11 310 10 308 5.41e-142 404
Msa0138410 AT2G02370.1 64.667 300 105 1 11 310 10 308 5.41e-142 404
Msa0138410 AT2G02370.3 64.667 300 105 1 11 310 10 308 5.41e-142 404
Msa0138410 AT1G12450.1 41.786 280 162 1 12 291 15 293 2.64e-76 236
Msa0138410 AT4G12000.1 39.649 285 168 3 9 291 18 300 1.10e-69 219
Msa0138410 AT4G12000.2 39.649 285 168 3 9 291 18 300 1.10e-69 219
Msa0138410 AT4G12000.3 39.649 285 168 3 9 291 18 300 1.10e-69 219
Msa0138410 AT4G22850.1 43.154 241 136 1 52 291 51 291 4.32e-69 217
Msa0138410 AT4G22850.2 45.050 202 111 0 52 253 51 252 2.74e-60 194
Msa0138410 AT1G03260.1 27.624 181 123 4 128 305 76 251 1.00e-15 76.3
Msa0138410 AT5G19070.1 27.068 266 179 7 53 309 2 261 1.02e-12 67.8
Msa0138410 AT1G22850.2 31.915 141 90 3 106 244 155 291 3.70e-12 66.2
Msa0138410 AT1G22850.1 31.915 141 90 3 106 244 155 291 4.38e-12 66.2

Find 137 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGCTGCCTCTGTTTC+TGG 0.127067 1_3:-71272192 Msa0138410:CDS
GCCTAATCATTGCAGCATTC+TGG 0.175711 1_3:+71273077 None:intergenic
AATTACAAAGGGTTCAAAAT+TGG 0.209973 1_3:+71272035 None:intergenic
GGCCCTTCCATGTGGTTGGC+TGG 0.261736 1_3:-71273348 Msa0138410:CDS
ACACTAATGTCATAATAAAT+TGG 0.290695 1_3:+71272108 None:intergenic
GCTTCACTGTTTATGCAAAA+AGG 0.293092 1_3:-71272248 Msa0138410:CDS
AACCCTTGGTTCATCGGATA+TGG 0.298073 1_3:+71274515 None:intergenic
CCTTGGCTTTGTTATAATAA+TGG 0.304861 1_3:-71273307 Msa0138410:CDS
TTTGAACCCTTTGTAATTAC+CGG 0.311140 1_3:-71272030 Msa0138410:three_prime_UTR
AAATCACTGGTCATCATGTT+AGG 0.313901 1_3:-71274563 Msa0138410:CDS
AATTAATAATACTGGAAATA+AGG 0.316723 1_3:+71273377 None:intergenic
GGTGGATGAAAGTCTCTATA+TGG 0.320063 1_3:-71274437 Msa0138410:CDS
TTATGTATCTAACTAATATC+TGG 0.340143 1_3:-71272079 Msa0138410:three_prime_UTR
TTTCACTTCTTCTAGTCAAA+TGG 0.349293 1_3:-71274395 Msa0138410:CDS
ATTACAAAGGGTTCAAAATT+GGG 0.357671 1_3:+71272036 None:intergenic
CCTAATCATTGCAGCATTCT+GGG 0.361713 1_3:+71273078 None:intergenic
ATGGTCCTCCCTTACCTGAT+TGG 0.362401 1_3:-71273267 Msa0138410:CDS
CCGGAAGGAATTAATAATAC+TGG 0.368326 1_3:+71273369 None:intergenic
AGTTTGGCTGATGCACAGTA+TGG 0.369283 1_3:-71272345 Msa0138410:CDS
ATTGCCGTTATTACCATTGT+TGG 0.378829 1_3:-71272270 Msa0138410:CDS
CCAGTATTATTAATTCCTTC+CGG 0.378920 1_3:-71273369 Msa0138410:CDS
GGCTTGCTGGGGAAGGGAGC+TGG 0.381729 1_3:-71273057 Msa0138410:CDS
TTCACTTCTTCTAGTCAAAT+GGG 0.394207 1_3:-71274394 Msa0138410:CDS
AACAGAGGCAGCTTCTTCAT+TGG 0.399823 1_3:+71272197 None:intergenic
TTCCGGCCCTTCCATGTGGT+TGG 0.403896 1_3:-71273352 Msa0138410:CDS
TCCAACTCCCTTGACGGCTC+TGG 0.403925 1_3:+71274594 None:intergenic
TAGATGTAGATAAAAGCTTC+TGG 0.404507 1_3:+71272905 None:intergenic
TTCAGCAATGGTTAGAGAAA+TGG 0.404756 1_3:-71273102 Msa0138410:intron
TGGTAGATTGATAAAGAGTT+TGG 0.407618 1_3:-71272361 Msa0138410:CDS
CATCCCACATATGCTGATTC+CGG 0.410533 1_3:+71272011 None:intergenic
CCTTGTACTCGTTGCTTCAC+TGG 0.417197 1_3:-71273400 Msa0138410:CDS
TAGTGACAGATATGAAGTTT+TGG 0.426906 1_3:-71272961 Msa0138410:CDS
ATCTAACTAATATCTGGTTT+AGG 0.428522 1_3:-71272073 Msa0138410:three_prime_UTR
GGCTTTGTTATAATAATGGT+TGG 0.430539 1_3:-71273303 Msa0138410:CDS
GCTGCAATGATTAGGCTTGC+TGG 0.438803 1_3:-71273070 Msa0138410:CDS
AAGAAGCTGCCTCTGTTTCT+GGG 0.441331 1_3:-71272191 Msa0138410:CDS
ATGTAAGACCTTTCATTTCA+AGG 0.442413 1_3:+71272138 None:intergenic
TGTAAGACCTTTCATTTCAA+GGG 0.445718 1_3:+71272139 None:intergenic
CTGCAATGATTAGGCTTGCT+GGG 0.453237 1_3:-71273069 Msa0138410:CDS
AGTTTCTCCAACTCCCTTGA+CGG 0.459269 1_3:+71274588 None:intergenic
AGCCAACCACATGGAAGGGC+CGG 0.460238 1_3:+71273350 None:intergenic
GAGTGGGAAGCAACTGCCTT+TGG 0.464665 1_3:-71273438 Msa0138410:CDS
TAAAATGACTTACATGAATA+CGG 0.467699 1_3:+71273229 None:intergenic
CCCAGAATGCTGCAATGATT+AGG 0.468506 1_3:-71273078 Msa0138410:CDS
GTGGATGAAAGTCTCTATAT+GGG 0.472228 1_3:-71274436 Msa0138410:CDS
GTTGCTTCCCACTCCATCAC+TGG 0.474508 1_3:+71273447 None:intergenic
TTGAATATAGTGTAGGGAAA+AGG 0.474878 1_3:+71272995 None:intergenic
GCTTTGTTATAATAATGGTT+GGG 0.475467 1_3:-71273302 Msa0138410:CDS
TTCAACAACCCTTGGTTCAT+CGG 0.477195 1_3:+71274509 None:intergenic
CTGATTCCGGTAATTACAAA+GGG 0.481298 1_3:+71272024 None:intergenic
CCAGTGAAGCAACGAGTACA+AGG 0.481760 1_3:+71273400 None:intergenic
CACGGAACTTAAGTCCAATC+AGG 0.482245 1_3:+71273253 None:intergenic
AACTTAAGTCCAATCAGGTA+AGG 0.484935 1_3:+71273258 None:intergenic
GCCCTTCCATGTGGTTGGCT+GGG 0.488079 1_3:-71273347 Msa0138410:CDS
GTAATTCTTGATTCAGCTTG+AGG 0.488257 1_3:+71274471 None:intergenic
ATAATGGTTGGGACAACCAT+TGG 0.489908 1_3:-71273291 Msa0138410:CDS
GCTTTCAATAAGTTCAAAAG+AGG 0.490722 1_3:-71275727 Msa0138410:five_prime_UTR
TGGATAATTATTAATTGCAT+AGG 0.493560 1_3:+71271942 None:intergenic
ACCAGAGCCGTCAAGGGAGT+TGG 0.495487 1_3:-71274595 Msa0138410:CDS
TGCTACTGATCCACAAAAGT+AGG 0.496974 1_3:+71272937 None:intergenic
AATCACTGGTCATCATGTTA+GGG 0.497053 1_3:-71274562 Msa0138410:CDS
ATTTCAGCTTCAACAACCCT+TGG 0.497272 1_3:+71274501 None:intergenic
AACTTACCAGGAAGAAGAAA+AGG 0.500493 1_3:+71275466 None:intergenic
ACGAGTACAAGGGCGAGAAC+TGG 0.500813 1_3:+71273411 None:intergenic
ATGATTAGGCTTGCTGGGGA+AGG 0.501695 1_3:-71273064 Msa0138410:CDS
ATTACCGGAATCAGCATATG+TGG 0.502349 1_3:-71272015 Msa0138410:three_prime_UTR
GCGACCGCCGTGTACGGTGG+TGG 0.506310 1_3:+71275616 None:intergenic
GCCGTGTACGGTGGTGGAGT+TGG 0.506342 1_3:+71275622 None:intergenic
TAATGGTTGGGACAACCATT+GGG 0.508872 1_3:-71273290 Msa0138410:CDS
GAGGCGGCGACCGCCGTGTA+CGG 0.512585 1_3:+71275610 None:intergenic
GCATAATTGAATATAGTGTA+GGG 0.517652 1_3:+71272989 None:intergenic
CAGAGAGAAACGAACGGTAG+AGG 0.518077 1_3:+71275539 None:intergenic
TTCTTTATCCAGTGATGGAG+TGG 0.528968 1_3:-71273455 Msa0138410:CDS
TTGTGGATCAGTAGCAGGAA+TGG 0.529813 1_3:-71272930 Msa0138410:CDS
GAATTACATCTTTCAAGTGG+TGG 0.533418 1_3:-71274455 Msa0138410:CDS
TGATGACACCAGAGCCGTCA+AGG 0.538710 1_3:-71274602 Msa0138410:CDS
GAAGCCAACAATGGTAATAA+CGG 0.542235 1_3:+71272266 None:intergenic
TGCTAGTCTTGAGATGAAGA+AGG 0.542284 1_3:-71272166 Msa0138410:CDS
ATCCCAGCCAACCACATGGA+AGG 0.542750 1_3:+71273345 None:intergenic
TTAGTTAAGCTTTCTCTGAA+CGG 0.544557 1_3:+71275564 None:intergenic
CGGCGGTCGCCGCCTCACTC+CGG 0.545444 1_3:-71275603 Msa0138410:five_prime_UTR
GGCGAGAACTGGTCGGCCAA+AGG 0.547361 1_3:+71273422 None:intergenic
GCTGATTCCGGTAATTACAA+AGG 0.550649 1_3:+71272023 None:intergenic
TCCCAGCCAACCACATGGAA+GGG 0.555362 1_3:+71273346 None:intergenic
CCGCCTCACTCCGGTCACCT+AGG 0.557116 1_3:-71275594 Msa0138410:five_prime_UTR
TTGGAGAAACTTGAAATCAC+TGG 0.559246 1_3:-71274576 Msa0138410:CDS
TCCAACTCCACCACCGTACA+CGG 0.560479 1_3:-71275623 Msa0138410:five_prime_UTR
AGGTTTCCCCTTGAAATGAA+AGG 0.560851 1_3:-71272146 Msa0138410:exon
GTAGGTTCTTTATCCAGTGA+TGG 0.563474 1_3:-71273460 Msa0138410:intron
TGATTAGGCTTGCTGGGGAA+GGG 0.564478 1_3:-71273063 Msa0138410:CDS
CTGGTTTCATCAATTTCAAG+TGG 0.564535 1_3:-71273038 Msa0138410:CDS
CGGAATCAGCATATGTGGGA+TGG 0.568940 1_3:-71272010 Msa0138410:three_prime_UTR
AGCATAATTGAATATAGTGT+AGG 0.570574 1_3:+71272988 None:intergenic
TAATAAACTCAAAATAGAAG+AGG 0.577914 1_3:-71272220 Msa0138410:CDS
GTAAGACCTTTCATTTCAAG+GGG 0.580961 1_3:+71272140 None:intergenic
GCTACTGATCCACAAAAGTA+GGG 0.584812 1_3:+71272938 None:intergenic
GTTTGGCTGATGCACAGTAT+GGG 0.587091 1_3:-71272344 Msa0138410:CDS
GCGGCGACCGCCGTGTACGG+TGG 0.588160 1_3:+71275613 None:intergenic
CTCTGAACGGAGCGAAACCT+AGG 0.588419 1_3:+71275577 None:intergenic
TCTTTATCCAGTGATGGAGT+GGG 0.589778 1_3:-71273454 Msa0138410:CDS
TGCCATATCCGATGAACCAA+GGG 0.592080 1_3:-71274517 Msa0138410:CDS
CAAGAATTACATCTTTCAAG+TGG 0.599182 1_3:-71274458 Msa0138410:CDS
GACTTACATGAATACGGTCA+CGG 0.599475 1_3:+71273235 None:intergenic
CGGAGCGAAACCTAGGTGAC+CGG 0.603246 1_3:+71275584 None:intergenic
TTCCTTCCGGCCCTTCCATG+TGG 0.604727 1_3:-71273356 Msa0138410:CDS
AGGGTTCAAAATTGGGAGAG+AGG 0.613044 1_3:+71272043 None:intergenic
TCACTTCTTCTAGTCAAATG+GGG 0.613697 1_3:-71274393 Msa0138410:CDS
AACCACATGGAAGGGCCGGA+AGG 0.615107 1_3:+71273354 None:intergenic
ACTTAAGTCCAATCAGGTAA+GGG 0.618923 1_3:+71273259 None:intergenic
GATGACACCAGAGCCGTCAA+GGG 0.622079 1_3:-71274601 Msa0138410:CDS
AAACCTAGGTGACCGGAGTG+AGG 0.622170 1_3:+71275591 None:intergenic
ACTAGCATTCCCAGAAACAG+AGG 0.622994 1_3:+71272182 None:intergenic
TGGCTGATGCACAGTATGGG+AGG 0.625311 1_3:-71272341 Msa0138410:CDS
CCTAGGTGACCGGAGTGAGG+CGG 0.626515 1_3:+71275594 None:intergenic
AATCATCCCAGCCAACCACA+TGG 0.628943 1_3:+71273341 None:intergenic
TTGCCATATCCGATGAACCA+AGG 0.632917 1_3:-71274518 Msa0138410:CDS
CGATTTCCACTGTGGTCATG+TGG 0.634060 1_3:+71272316 None:intergenic
CTAATCATTGCAGCATTCTG+GGG 0.635065 1_3:+71273079 None:intergenic
GGTTGGGACAACCATTGGGA+TGG 0.637137 1_3:-71273286 Msa0138410:CDS
ATCACTGGTCATCATGTTAG+GGG 0.642390 1_3:-71274561 Msa0138410:CDS
TTACCGGAATCAGCATATGT+GGG 0.650553 1_3:-71272014 Msa0138410:three_prime_UTR
GTAAGGGAGGACCATCCCAA+TGG 0.657572 1_3:+71273275 None:intergenic
TAAGTCCAATCAGGTAAGGG+AGG 0.662695 1_3:+71273262 None:intergenic
GTTGTATACGATTTCCACTG+TGG 0.663400 1_3:+71272308 None:intergenic
ATAAACAGTGAAGCCAACAA+TGG 0.664914 1_3:+71272257 None:intergenic
TGTCATCATTGAGATGCCAG+AGG 0.674381 1_3:+71274617 None:intergenic
TGCAATGATTAGGCTTGCTG+GGG 0.676509 1_3:-71273068 Msa0138410:CDS
TGGATGAAAGTCTCTATATG+GGG 0.676560 1_3:-71274435 Msa0138410:CDS
GTCATCATTGAGATGCCAGA+GGG 0.677520 1_3:+71274618 None:intergenic
TCACTGGTCATCATGTTAGG+GGG 0.683003 1_3:-71274560 Msa0138410:CDS
CCATTATTATAACAAAGCCA+AGG 0.686194 1_3:+71273307 None:intergenic
GTACAAGGGCGAGAACTGGT+CGG 0.687427 1_3:+71273415 None:intergenic
CAGTGAAGCAACGAGTACAA+GGG 0.688514 1_3:+71273401 None:intergenic
AACTCCACCACCGTACACGG+CGG 0.724025 1_3:-71275620 Msa0138410:five_prime_UTR
GAGGCACCACATGACCACAG+TGG 0.767959 1_3:-71272322 Msa0138410:CDS
CAGCTGCAGAGAGAAACGAA+CGG 0.779858 1_3:+71275533 None:intergenic
AACAGAAGAACACTTCAACG+CGG 0.790889 1_3:+71275663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACACAATAAAAAATT+GGG + chr1_3:71272573-71272592 None:intergenic 10.0%
!! ATATAAACACAATAAAAAAT+TGG + chr1_3:71272574-71272593 None:intergenic 10.0%
!! TAAAAATTCAAAAAATTTAG+AGG + chr1_3:71274520-71274539 None:intergenic 10.0%
!!! TTAATCTTTTTATTAATAGA+TGG - chr1_3:71275268-71275287 Msa0138410:intron 10.0%
!!! TCATTAAATTAGTTCAATTT+TGG - chr1_3:71272454-71272473 Msa0138410:intron 15.0%
!! ATAAACACAATAAAAAATTG+GGG + chr1_3:71272572-71272591 None:intergenic 15.0%
!!! GATAAATTATTTTTTGATTG+TGG - chr1_3:71272946-71272965 Msa0138410:CDS 15.0%
!!! CTTTTGTGATAATAAAATAT+TGG + chr1_3:71273545-71273564 None:intergenic 15.0%
!!! CAATATTTTATTATCACAAA+AGG - chr1_3:71273543-71273562 Msa0138410:intron 15.0%
!! AATTAATAATACTGGAAATA+AGG + chr1_3:71274324-71274343 None:intergenic 15.0%
!! GTTAAAAATATTCTCAAATA+AGG + chr1_3:71274924-71274943 None:intergenic 15.0%
!! ATAATTGTGTTAATTTCATT+TGG + chr1_3:71275003-71275022 None:intergenic 15.0%
!!! ACTTTTGTTACTTTATTTTT+TGG - chr1_3:71275223-71275242 Msa0138410:intron 15.0%
!!! GTTTTTCTTTCATTAATTGA+AGG - chr1_3:71272332-71272351 Msa0138410:CDS 20.0%
!!! TAAAGTTTTTCTTTTCTAAG+GGG + chr1_3:71272500-71272519 None:intergenic 20.0%
!!! GTAAAGTTTTTCTTTTCTAA+GGG + chr1_3:71272501-71272520 None:intergenic 20.0%
!! TTGTGTTTATATGAATTGTT+TGG - chr1_3:71272582-71272601 Msa0138410:intron 20.0%
!! AAATTGAAAGTTATGAATGT+GGG - chr1_3:71272611-71272630 Msa0138410:intron 20.0%
!! CAAGAATTTGTGTATAAAAA+TGG - chr1_3:71272753-71272772 Msa0138410:intron 20.0%
!! AATTTGTGTATAAAAATGGA+GGG - chr1_3:71272757-71272776 Msa0138410:intron 20.0%
!! TTTAATCGTTGAAGAATATT+AGG - chr1_3:71273699-71273718 Msa0138410:intron 20.0%
!! TTAATCGTTGAAGAATATTA+GGG - chr1_3:71273700-71273719 Msa0138410:intron 20.0%
!! TATGTTTCATCACTTTATAT+GGG + chr1_3:71273861-71273880 None:intergenic 20.0%
!! CTATGTAATGTAATGTAATA+AGG - chr1_3:71274046-71274065 Msa0138410:intron 20.0%
!! TGTAACCAAGAAAAAAAAAA+GGG + chr1_3:71274120-71274139 None:intergenic 20.0%
!! TATGTTAAATAAACTTGAAG+AGG - chr1_3:71274182-71274201 Msa0138410:intron 20.0%
!! TAAAATGACTTACATGAATA+CGG + chr1_3:71274472-71274491 None:intergenic 20.0%
!!! TGAATATTTTGATTTACATG+AGG + chr1_3:71274889-71274908 None:intergenic 20.0%
!! AACCATAGAAAATATTAGAA+TGG + chr1_3:71275088-71275107 None:intergenic 20.0%
!!! ATTCTAATATTTTCTATGGT+TGG - chr1_3:71275087-71275106 Msa0138410:intron 20.0%
!! TCTCATATTCATATATATTG+TGG + chr1_3:71275155-71275174 None:intergenic 20.0%
!! CCATTAACATATAAGAAAAA+AGG + chr1_3:71275303-71275322 None:intergenic 20.0%
!!! CCTTTTTTCTTATATGTTAA+TGG - chr1_3:71275300-71275319 Msa0138410:intron 20.0%
!! TAATAAACTCAAAATAGAAG+AGG - chr1_3:71275478-71275497 Msa0138410:five_prime_UTR 20.0%
!! ACACTAATGTCATAATAAAT+TGG + chr1_3:71275593-71275612 None:intergenic 20.0%
!! TTATGTATCTAACTAATATC+TGG - chr1_3:71275619-71275638 Msa0138410:five_prime_UTR 20.0%
!! TGGATAATTATTAATTGCAT+AGG + chr1_3:71275759-71275778 None:intergenic 20.0%
! TAGAAATTATGAAACTTACC+AGG + chr1_3:71272247-71272266 None:intergenic 25.0%
!!! TAATTGAAGGCATTGAATAT+TGG - chr1_3:71272345-71272364 Msa0138410:CDS 25.0%
!! GGTAAAGTTTTTCTTTTCTA+AGG + chr1_3:71272502-71272521 None:intergenic 25.0%
! CAATAAAAAATTGGGGAAAA+TGG + chr1_3:71272565-71272584 None:intergenic 25.0%
! GAAATTGAAAGTTATGAATG+TGG - chr1_3:71272610-71272629 Msa0138410:intron 25.0%
!!! ATTTTTTACTTTCCTCTTCT+AGG - chr1_3:71272689-71272708 Msa0138410:intron 25.0%
!!! TTTTTTACTTTCCTCTTCTA+GGG - chr1_3:71272690-71272709 Msa0138410:intron 25.0%
!! GAATAGGTTTTTGTTAATTG+TGG - chr1_3:71272727-71272746 Msa0138410:intron 25.0%
! GAATTTGTGTATAAAAATGG+AGG - chr1_3:71272756-71272775 Msa0138410:intron 25.0%
!! ATCTAATCATTGTGAAGTTT+TGG - chr1_3:71272797-71272816 Msa0138410:intron 25.0%
!! TCTAATCATTGTGAAGTTTT+GGG - chr1_3:71272798-71272817 Msa0138410:intron 25.0%
! TATCATAAAGACTAAGACTA+TGG + chr1_3:71272930-71272949 None:intergenic 25.0%
!! TTTTCTTGTTCTATCTTCAT+CGG - chr1_3:71273394-71273413 Msa0138410:CDS 25.0%
!! TCACAAAAGGATTTGAATTT+TGG - chr1_3:71273556-71273575 Msa0138410:intron 25.0%
!!! AATTTTGGTAATATGTTCCT+TGG - chr1_3:71273571-71273590 Msa0138410:intron 25.0%
! TAATCGTTGAAGAATATTAG+GGG - chr1_3:71273701-71273720 Msa0138410:intron 25.0%
! GTATGTTTCATCACTTTATA+TGG + chr1_3:71273862-71273881 None:intergenic 25.0%
! GTGTAACCAAGAAAAAAAAA+AGG + chr1_3:71274121-71274140 None:intergenic 25.0%
!! AACATTGACATTTTTATCGT+AGG - chr1_3:71274220-71274239 Msa0138410:intron 25.0%
!! GCTTTGTTATAATAATGGTT+GGG - chr1_3:71274396-71274415 Msa0138410:CDS 25.0%
! GCATAATTGAATATAGTGTA+GGG + chr1_3:71274712-71274731 None:intergenic 25.0%
! AGCATAATTGAATATAGTGT+AGG + chr1_3:71274713-71274732 None:intergenic 25.0%
! AATAAACAACACATCTTACT+TGG - chr1_3:71275061-71275080 Msa0138410:intron 25.0%
!! GACCATTCTAATATTTTCTA+TGG - chr1_3:71275083-71275102 Msa0138410:intron 25.0%
! ATTGTGGTCAAACAAAATTT+AGG + chr1_3:71275139-71275158 None:intergenic 25.0%
!! ATCTAACTAATATCTGGTTT+AGG - chr1_3:71275625-71275644 Msa0138410:five_prime_UTR 25.0%
! ATTACAAAGGGTTCAAAATT+GGG + chr1_3:71275665-71275684 None:intergenic 25.0%
! AATTACAAAGGGTTCAAAAT+TGG + chr1_3:71275666-71275685 None:intergenic 25.0%
GCTTTCAATAAGTTCAAAAG+AGG - chr1_3:71271971-71271990 Msa0138410:three_prime_UTR 30.0%
TTAGTTAAGCTTTCTCTGAA+CGG + chr1_3:71272137-71272156 None:intergenic 30.0%
TTGTTGTAGCTTATTGAACT+AGG - chr1_3:71272389-71272408 Msa0138410:intron 30.0%
GAGTAGCTACAAAATATGAA+AGG + chr1_3:71272523-71272542 None:intergenic 30.0%
TTTGTAGCTACTCATTAGAA+TGG - chr1_3:71272530-71272549 Msa0138410:intron 30.0%
!!! TGGGTGAAGATTTTTAGTTT+GGG - chr1_3:71272630-71272649 Msa0138410:intron 30.0%
GGTATATTAGGATGTTGAAT+AGG - chr1_3:71272711-71272730 Msa0138410:intron 30.0%
! CTAATCATTGTGAAGTTTTG+GGG - chr1_3:71272799-71272818 Msa0138410:intron 30.0%
TTAGATATGCACCTTGAATT+TGG - chr1_3:71273005-71273024 Msa0138410:CDS 30.0%
CAAGAATTACATCTTTCAAG+TGG - chr1_3:71273240-71273259 Msa0138410:intron 30.0%
TTTCACTTCTTCTAGTCAAA+TGG - chr1_3:71273303-71273322 Msa0138410:CDS 30.0%
TTCACTTCTTCTAGTCAAAT+GGG - chr1_3:71273304-71273323 Msa0138410:CDS 30.0%
! AGTACCTTTTCAAAAGCAAA+GGG + chr1_3:71273335-71273354 None:intergenic 30.0%
! AAGTACCTTTTCAAAAGCAA+AGG + chr1_3:71273336-71273355 None:intergenic 30.0%
! TTAATCAATACAGTGCTGTT+TGG - chr1_3:71273448-71273467 Msa0138410:CDS 30.0%
GTGTCAGATTTCTATGTAAT+TGG - chr1_3:71273593-71273612 Msa0138410:intron 30.0%
! TCTAACACTCACTCTTTTAT+TGG - chr1_3:71273798-71273817 Msa0138410:intron 30.0%
! CTAACACTCACTCTTTTATT+GGG - chr1_3:71273799-71273818 Msa0138410:intron 30.0%
CGAGTCTTACAATTTGAAAA+TGG - chr1_3:71273833-71273852 Msa0138410:intron 30.0%
TCTAACACTCACTCATTTAT+TGG + chr1_3:71273896-71273915 None:intergenic 30.0%
ATTCTTCTGTCAACATTAGT+TGG - chr1_3:71273945-71273964 Msa0138410:intron 30.0%
ACCAAGAAAAAAAAAAGGGA+GGG + chr1_3:71274116-71274135 None:intergenic 30.0%
AACCAAGAAAAAAAAAAGGG+AGG + chr1_3:71274117-71274136 None:intergenic 30.0%
TTAAATAAACTTGAAGAGGC+TGG - chr1_3:71274186-71274205 Msa0138410:intron 30.0%
CCAGTATTATTAATTCCTTC+CGG - chr1_3:71274329-71274348 Msa0138410:intron 30.0%
CCATTATTATAACAAAGCCA+AGG + chr1_3:71274394-71274413 None:intergenic 30.0%
!! CCTTGGCTTTGTTATAATAA+TGG - chr1_3:71274391-71274410 Msa0138410:CDS 30.0%
!! GGCTTTGTTATAATAATGGT+TGG - chr1_3:71274395-71274414 Msa0138410:CDS 30.0%
TTGAATATAGTGTAGGGAAA+AGG + chr1_3:71274706-71274725 None:intergenic 30.0%
! TAGTGACAGATATGAAGTTT+TGG - chr1_3:71274737-71274756 Msa0138410:intron 30.0%
TAGATGTAGATAAAAGCTTC+TGG + chr1_3:71274796-71274815 None:intergenic 30.0%
! AAGCTTTTATCTACATCTAC+AGG - chr1_3:71274797-71274816 Msa0138410:intron 30.0%
TGATATGTTTAGATAGTTGC+AGG - chr1_3:71274843-71274862 Msa0138410:intron 30.0%
TGGTAGATTGATAAAGAGTT+TGG - chr1_3:71275337-71275356 Msa0138410:intron 30.0%
TGTAAGACCTTTCATTTCAA+GGG + chr1_3:71275562-71275581 None:intergenic 30.0%
ATGTAAGACCTTTCATTTCA+AGG + chr1_3:71275563-71275582 None:intergenic 30.0%
TTTGAACCCTTTGTAATTAC+CGG - chr1_3:71275668-71275687 Msa0138410:five_prime_UTR 30.0%
AACTTACCAGGAAGAAGAAA+AGG + chr1_3:71272235-71272254 None:intergenic 35.0%
!! TTCTTTTCTAAGGGGATGAA+AGG + chr1_3:71272492-71272511 None:intergenic 35.0%
!!! GTGGGTGAAGATTTTTAGTT+TGG - chr1_3:71272629-71272648 Msa0138410:intron 35.0%
!! AGTTTGGGTTTTCAGATGAA+AGG - chr1_3:71272645-71272664 Msa0138410:intron 35.0%
!! GTTTGGGTTTTCAGATGAAA+GGG - chr1_3:71272646-71272665 Msa0138410:intron 35.0%
!! TTCCTCTTCTAGGGTATATT+AGG - chr1_3:71272699-71272718 Msa0138410:intron 35.0%
ATCCTAATATACCCTAGAAG+AGG + chr1_3:71272704-71272723 None:intergenic 35.0%
TTTAAACCATCCGATTCCTA+GGG - chr1_3:71272822-71272841 Msa0138410:intron 35.0%
! TGGTAATTTGAAGTTCAGTC+TGG - chr1_3:71272856-71272875 Msa0138410:intron 35.0%
! TAATTTGAAGTTCAGTCTGG+AGG - chr1_3:71272859-71272878 Msa0138410:intron 35.0%
AGGTAAGTAAAGTCTGTTCA+AGG - chr1_3:71272879-71272898 Msa0138410:intron 35.0%
AGACTACGATTCCAAATTCA+AGG + chr1_3:71273019-71273038 None:intergenic 35.0%
TTGGAGAAACTTGAAATCAC+TGG - chr1_3:71273122-71273141 Msa0138410:intron 35.0%
AAATCACTGGTCATCATGTT+AGG - chr1_3:71273135-71273154 Msa0138410:intron 35.0%
AATCACTGGTCATCATGTTA+GGG - chr1_3:71273136-71273155 Msa0138410:intron 35.0%
GTAATTCTTGATTCAGCTTG+AGG + chr1_3:71273230-71273249 None:intergenic 35.0%
! GAATTACATCTTTCAAGTGG+TGG - chr1_3:71273243-71273262 Msa0138410:CDS 35.0%
GTGGATGAAAGTCTCTATAT+GGG - chr1_3:71273262-71273281 Msa0138410:CDS 35.0%
TGGATGAAAGTCTCTATATG+GGG - chr1_3:71273263-71273282 Msa0138410:CDS 35.0%
TCACTTCTTCTAGTCAAATG+GGG - chr1_3:71273305-71273324 Msa0138410:CDS 35.0%
GCAGAAAATTATGAAGCAAG+AGG + chr1_3:71273359-71273378 None:intergenic 35.0%
! CTTGCTTCATAATTTTCTGC+TGG - chr1_3:71273359-71273378 Msa0138410:CDS 35.0%
! TTCATAATTTTCTGCTGGCA+CGG - chr1_3:71273364-71273383 Msa0138410:CDS 35.0%
TTCTATCTTCATCGGTGATT+TGG - chr1_3:71273402-71273421 Msa0138410:CDS 35.0%
TCTATCTTCATCGGTGATTT+GGG - chr1_3:71273403-71273422 Msa0138410:CDS 35.0%
TACATAGAAATCTGACACCA+AGG + chr1_3:71273591-71273610 None:intergenic 35.0%
AAAGCATAGTAAACTGTTCG+CGG + chr1_3:71273682-71273701 None:intergenic 35.0%
!! TTTCGATTATGAGAAGTGCT+TGG - chr1_3:71273974-71273993 Msa0138410:intron 35.0%
!!! ACCCTCCCTTTTTTTTTTCT+TGG - chr1_3:71274112-71274131 Msa0138410:intron 35.0%
CCGGAAGGAATTAATAATAC+TGG + chr1_3:71274332-71274351 None:intergenic 35.0%
!!! ATGATTTTTGGTTATGGCCT+TGG - chr1_3:71274374-71274393 Msa0138410:CDS 35.0%
ACTTAAGTCCAATCAGGTAA+GGG + chr1_3:71274442-71274461 None:intergenic 35.0%
AACTTAAGTCCAATCAGGTA+AGG + chr1_3:71274443-71274462 None:intergenic 35.0%
AATTTAGAGGACTAGACTTG+TGG + chr1_3:71274507-71274526 None:intergenic 35.0%
TTCAGCAATGGTTAGAGAAA+TGG - chr1_3:71274596-71274615 Msa0138410:CDS 35.0%
CTGGTTTCATCAATTTCAAG+TGG - chr1_3:71274660-71274679 Msa0138410:intron 35.0%
GCAAATATGACTGAGTCTAA+AGG - chr1_3:71275196-71275215 Msa0138410:intron 35.0%
TAATGGTCAATATTGTGCAG+TGG - chr1_3:71275317-71275336 Msa0138410:intron 35.0%
ATTGCCGTTATTACCATTGT+TGG - chr1_3:71275428-71275447 Msa0138410:intron 35.0%
GAAGCCAACAATGGTAATAA+CGG + chr1_3:71275435-71275454 None:intergenic 35.0%
ATAAACAGTGAAGCCAACAA+TGG + chr1_3:71275444-71275463 None:intergenic 35.0%
GCTTCACTGTTTATGCAAAA+AGG - chr1_3:71275450-71275469 Msa0138410:intron 35.0%
GTAAGACCTTTCATTTCAAG+GGG + chr1_3:71275561-71275580 None:intergenic 35.0%
CTGATTCCGGTAATTACAAA+GGG + chr1_3:71275677-71275696 None:intergenic 35.0%
AACAGAAGAACACTTCAACG+CGG + chr1_3:71272038-71272057 None:intergenic 40.0%
! CTTCTTCCTTTTCTTCTTCC+TGG - chr1_3:71272226-71272245 Msa0138410:CDS 40.0%
ATTCACGTGATATAGCGTTG+CGG - chr1_3:71272420-71272439 Msa0138410:intron 40.0%
GTTTAAACCATCCGATTCCT+AGG - chr1_3:71272821-71272840 Msa0138410:intron 40.0%
TTAAACCATCCGATTCCTAG+GGG - chr1_3:71272823-71272842 Msa0138410:intron 40.0%
ATCACTGGTCATCATGTTAG+GGG - chr1_3:71273137-71273156 Msa0138410:intron 40.0%
TTCAACAACCCTTGGTTCAT+CGG + chr1_3:71273192-71273211 None:intergenic 40.0%
ATTTCAGCTTCAACAACCCT+TGG + chr1_3:71273200-71273219 None:intergenic 40.0%
GGTGGATGAAAGTCTCTATA+TGG - chr1_3:71273261-71273280 Msa0138410:CDS 40.0%
!! AGTGCCCTTTGCTTTTGAAA+AGG - chr1_3:71273328-71273347 Msa0138410:CDS 40.0%
CTTCAGAATAATGACACCAC+TGG - chr1_3:71273998-71274017 Msa0138410:intron 40.0%
! ATATTTTCCTGCCAGTCAGT+AGG - chr1_3:71274074-71274093 Msa0138410:intron 40.0%
AAGCAACAATTCCTACTGAC+TGG + chr1_3:71274088-71274107 None:intergenic 40.0%
GAAAAAAAAAAGGGAGGGTG+AGG + chr1_3:71274111-71274130 None:intergenic 40.0%
GTAGGTTCTTTATCCAGTGA+TGG - chr1_3:71274238-71274257 Msa0138410:intron 40.0%
! TTCTTTATCCAGTGATGGAG+TGG - chr1_3:71274243-71274262 Msa0138410:intron 40.0%
! TCTTTATCCAGTGATGGAGT+GGG - chr1_3:71274244-71274263 Msa0138410:intron 40.0%
!!! GCTGGGATGATTTTTGGTTA+TGG - chr1_3:71274368-71274387 Msa0138410:intron 40.0%
ATAATGGTTGGGACAACCAT+TGG - chr1_3:71274407-71274426 Msa0138410:CDS 40.0%
TAATGGTTGGGACAACCATT+GGG - chr1_3:71274408-71274427 Msa0138410:CDS 40.0%
GACTTACATGAATACGGTCA+CGG + chr1_3:71274466-71274485 None:intergenic 40.0%
! CTTTGTTGCTTGTTCAGCAA+TGG - chr1_3:71274584-71274603 Msa0138410:CDS 40.0%
CTAATCATTGCAGCATTCTG+GGG + chr1_3:71274622-71274641 None:intergenic 40.0%
CCTAATCATTGCAGCATTCT+GGG + chr1_3:71274623-71274642 None:intergenic 40.0%
!! AAGTTTTGGCCCTACTTTTG+TGG - chr1_3:71274751-71274770 Msa0138410:intron 40.0%
GCTACTGATCCACAAAAGTA+GGG + chr1_3:71274763-71274782 None:intergenic 40.0%
TGCTACTGATCCACAAAAGT+AGG + chr1_3:71274764-71274783 None:intergenic 40.0%
! TACTTTTGTGGATCAGTAGC+AGG - chr1_3:71274763-71274782 Msa0138410:intron 40.0%
CTTGCTCTATCTTCCTAGAA+GGG + chr1_3:71274978-71274997 None:intergenic 40.0%
TCTTGCTCTATCTTCCTAGA+AGG + chr1_3:71274979-71274998 None:intergenic 40.0%
GTTGTATACGATTTCCACTG+TGG + chr1_3:71275393-71275412 None:intergenic 40.0%
!! TGCTAGTCTTGAGATGAAGA+AGG - chr1_3:71275532-71275551 Msa0138410:five_prime_UTR 40.0%
AGGTTTCCCCTTGAAATGAA+AGG - chr1_3:71275552-71275571 Msa0138410:five_prime_UTR 40.0%
! GCTGATTCCGGTAATTACAA+AGG + chr1_3:71275678-71275697 None:intergenic 40.0%
ATTACCGGAATCAGCATATG+TGG - chr1_3:71275683-71275702 Msa0138410:five_prime_UTR 40.0%
TTACCGGAATCAGCATATGT+GGG - chr1_3:71275684-71275703 Msa0138410:five_prime_UTR 40.0%
! GGGTTTTCAGATGAAAGGGT+AGG - chr1_3:71272650-71272669 Msa0138410:intron 45.0%
TTCAAGGATTGTTCCAGCCA+GGG - chr1_3:71272895-71272914 Msa0138410:intron 45.0%
GACTATGGTTTCACAATCCC+TGG + chr1_3:71272915-71272934 None:intergenic 45.0%
! GTTTCATTTTCACAGCCCTC+TGG - chr1_3:71273065-71273084 Msa0138410:CDS 45.0%
GTCATCATTGAGATGCCAGA+GGG + chr1_3:71273083-71273102 None:intergenic 45.0%
TGTCATCATTGAGATGCCAG+AGG + chr1_3:71273084-71273103 None:intergenic 45.0%
AGTTTCTCCAACTCCCTTGA+CGG + chr1_3:71273113-71273132 None:intergenic 45.0%
TCACTGGTCATCATGTTAGG+GGG - chr1_3:71273138-71273157 Msa0138410:intron 45.0%
!! GGGGGAGTACTGAATATGTT+AGG - chr1_3:71273156-71273175 Msa0138410:intron 45.0%
TTGCCATATCCGATGAACCA+AGG - chr1_3:71273180-71273199 Msa0138410:intron 45.0%
TGCCATATCCGATGAACCAA+GGG - chr1_3:71273181-71273200 Msa0138410:intron 45.0%
AACCCTTGGTTCATCGGATA+TGG + chr1_3:71273186-71273205 None:intergenic 45.0%
TCTGCGAAACAACAAACCAG+TGG + chr1_3:71274017-71274036 None:intergenic 45.0%
! AACAATTCCTACTGACTGGC+AGG + chr1_3:71274084-71274103 None:intergenic 45.0%
CAGTGAAGCAACGAGTACAA+GGG + chr1_3:71274300-71274319 None:intergenic 45.0%
!! TGGTTGGCTGGGATGATTTT+TGG - chr1_3:71274362-71274381 Msa0138410:intron 45.0%
TAAGTCCAATCAGGTAAGGG+AGG + chr1_3:71274439-71274458 None:intergenic 45.0%
CACGGAACTTAAGTCCAATC+AGG + chr1_3:71274448-71274467 None:intergenic 45.0%
CCCAGAATGCTGCAATGATT+AGG - chr1_3:71274620-71274639 Msa0138410:exon 45.0%
GCCTAATCATTGCAGCATTC+TGG + chr1_3:71274624-71274643 None:intergenic 45.0%
! CTGCAATGATTAGGCTTGCT+GGG - chr1_3:71274629-71274648 Msa0138410:intron 45.0%
!! TGCAATGATTAGGCTTGCTG+GGG - chr1_3:71274630-71274649 Msa0138410:intron 45.0%
TTGTGGATCAGTAGCAGGAA+TGG - chr1_3:71274768-71274787 Msa0138410:intron 45.0%
GAAGGGTGATAGCTAGAGAA+GGG + chr1_3:71274961-71274980 None:intergenic 45.0%
AGAAGGGTGATAGCTAGAGA+AGG + chr1_3:71274962-71274981 None:intergenic 45.0%
TCTCTAGCTATCACCCTTCT+AGG - chr1_3:71274962-71274981 Msa0138410:intron 45.0%
AGTTTGGCTGATGCACAGTA+TGG - chr1_3:71275353-71275372 Msa0138410:intron 45.0%
GTTTGGCTGATGCACAGTAT+GGG - chr1_3:71275354-71275373 Msa0138410:intron 45.0%
AACAGAGGCAGCTTCTTCAT+TGG + chr1_3:71275504-71275523 None:intergenic 45.0%
! AAGAAGCTGCCTCTGTTTCT+GGG - chr1_3:71275507-71275526 Msa0138410:five_prime_UTR 45.0%
ACTAGCATTCCCAGAAACAG+AGG + chr1_3:71275519-71275538 None:intergenic 45.0%
AGGGTTCAAAATTGGGAGAG+AGG + chr1_3:71275658-71275677 None:intergenic 45.0%
!! CATCCCACATATGCTGATTC+CGG + chr1_3:71275690-71275709 None:intergenic 45.0%
CAGAGAGAAACGAACGGTAG+AGG + chr1_3:71272162-71272181 None:intergenic 50.0%
CAGCTGCAGAGAGAAACGAA+CGG + chr1_3:71272168-71272187 None:intergenic 50.0%
CATCCGATTCCTAGGGGAAA+GGG - chr1_3:71272829-71272848 Msa0138410:intron 50.0%
ATCCGATTCCTAGGGGAAAG+GGG - chr1_3:71272830-71272849 Msa0138410:intron 50.0%
GTTCAAGGATTGTTCCAGCC+AGG - chr1_3:71272894-71272913 Msa0138410:intron 50.0%
ATGGTTTCACAATCCCTGGC+TGG + chr1_3:71272911-71272930 None:intergenic 50.0%
!! ACAGTGCTGTTTGGCTGTCA+TGG - chr1_3:71273457-71273476 Msa0138410:CDS 50.0%
CCAGTGAAGCAACGAGTACA+AGG + chr1_3:71274301-71274320 None:intergenic 50.0%
CCTTGTACTCGTTGCTTCAC+TGG - chr1_3:71274298-71274317 Msa0138410:intron 50.0%
AATCATCCCAGCCAACCACA+TGG + chr1_3:71274360-71274379 None:intergenic 50.0%
ATGGTCCTCCCTTACCTGAT+TGG - chr1_3:71274431-71274450 Msa0138410:CDS 50.0%
GCTGCAATGATTAGGCTTGC+TGG - chr1_3:71274628-71274647 Msa0138410:intron 50.0%
!! ATGATTAGGCTTGCTGGGGA+AGG - chr1_3:71274634-71274653 Msa0138410:intron 50.0%
!! TGATTAGGCTTGCTGGGGAA+GGG - chr1_3:71274635-71274654 Msa0138410:intron 50.0%
GGTGATAGCTAGAGAAGGGA+TGG + chr1_3:71274957-71274976 None:intergenic 50.0%
CGATTTCCACTGTGGTCATG+TGG + chr1_3:71275385-71275404 None:intergenic 50.0%
GAAGAAGCTGCCTCTGTTTC+TGG - chr1_3:71275506-71275525 Msa0138410:five_prime_UTR 50.0%
CGGAATCAGCATATGTGGGA+TGG - chr1_3:71275688-71275707 Msa0138410:five_prime_UTR 50.0%
TCCAACTCCACCACCGTACA+CGG - chr1_3:71272075-71272094 Msa0138410:three_prime_UTR 55.0%
AAACCTAGGTGACCGGAGTG+AGG + chr1_3:71272110-71272129 None:intergenic 55.0%
CTCTGAACGGAGCGAAACCT+AGG + chr1_3:71272124-71272143 None:intergenic 55.0%
CCTTTCCCCTAGGAATCGGA+TGG + chr1_3:71272831-71272850 None:intergenic 55.0%
CCATCCGATTCCTAGGGGAA+AGG - chr1_3:71272828-71272847 Msa0138410:intron 55.0%
TGCCCCTTTCCCCTAGGAAT+CGG + chr1_3:71272835-71272854 None:intergenic 55.0%
TGATGACACCAGAGCCGTCA+AGG - chr1_3:71273096-71273115 Msa0138410:CDS 55.0%
GATGACACCAGAGCCGTCAA+GGG - chr1_3:71273097-71273116 Msa0138410:CDS 55.0%
GTTGCTTCCCACTCCATCAC+TGG + chr1_3:71274254-71274273 None:intergenic 55.0%
GAGTGGGAAGCAACTGCCTT+TGG - chr1_3:71274260-71274279 Msa0138410:intron 55.0%
GTACAAGGGCGAGAACTGGT+CGG + chr1_3:71274286-71274305 None:intergenic 55.0%
ACGAGTACAAGGGCGAGAAC+TGG + chr1_3:71274290-71274309 None:intergenic 55.0%
TCCCAGCCAACCACATGGAA+GGG + chr1_3:71274355-71274374 None:intergenic 55.0%
ATCCCAGCCAACCACATGGA+AGG + chr1_3:71274356-71274375 None:intergenic 55.0%
GGTTGGGACAACCATTGGGA+TGG - chr1_3:71274412-71274431 Msa0138410:CDS 55.0%
GTAAGGGAGGACCATCCCAA+TGG + chr1_3:71274426-71274445 None:intergenic 55.0%
TGGCTGATGCACAGTATGGG+AGG - chr1_3:71275357-71275376 Msa0138410:intron 55.0%
AACTCCACCACCGTACACGG+CGG - chr1_3:71272078-71272097 Msa0138410:three_prime_UTR 60.0%
CGGAGCGAAACCTAGGTGAC+CGG + chr1_3:71272117-71272136 None:intergenic 60.0%
! TTCCTAGGGGAAAGGGGCAC+TGG - chr1_3:71272836-71272855 Msa0138410:intron 60.0%
TACCAGTGCCCCTTTCCCCT+AGG + chr1_3:71272841-71272860 None:intergenic 60.0%
ACCAGAGCCGTCAAGGGAGT+TGG - chr1_3:71273103-71273122 Msa0138410:intron 60.0%
TCCAACTCCCTTGACGGCTC+TGG + chr1_3:71273107-71273126 None:intergenic 60.0%
TTCCTTCCGGCCCTTCCATG+TGG - chr1_3:71274342-71274361 Msa0138410:intron 60.0%
AACCACATGGAAGGGCCGGA+AGG + chr1_3:71274347-71274366 None:intergenic 60.0%
TTCCGGCCCTTCCATGTGGT+TGG - chr1_3:71274346-71274365 Msa0138410:intron 60.0%
AGCCAACCACATGGAAGGGC+CGG + chr1_3:71274351-71274370 None:intergenic 60.0%
! GCCCTTCCATGTGGTTGGCT+GGG - chr1_3:71274351-71274370 Msa0138410:intron 60.0%
! GAGGCACCACATGACCACAG+TGG - chr1_3:71275376-71275395 Msa0138410:intron 60.0%
!! GCCGTGTACGGTGGTGGAGT+TGG + chr1_3:71272079-71272098 None:intergenic 65.0%
CCTAGGTGACCGGAGTGAGG+CGG + chr1_3:71272107-71272126 None:intergenic 65.0%
GGCGAGAACTGGTCGGCCAA+AGG + chr1_3:71274279-71274298 None:intergenic 65.0%
GGCCCTTCCATGTGGTTGGC+TGG - chr1_3:71274350-71274369 Msa0138410:intron 65.0%
CCGCCTCACTCCGGTCACCT+AGG - chr1_3:71272104-71272123 Msa0138410:three_prime_UTR 70.0%
!! GGCTTGCTGGGGAAGGGAGC+TGG - chr1_3:71274641-71274660 Msa0138410:intron 70.0%
GCGACCGCCGTGTACGGTGG+TGG + chr1_3:71272085-71272104 None:intergenic 75.0%
GAGGCGGCGACCGCCGTGTA+CGG + chr1_3:71272091-71272110 None:intergenic 75.0%
! GCGGCGACCGCCGTGTACGG+TGG + chr1_3:71272088-71272107 None:intergenic 80.0%
! CGGCGGTCGCCGCCTCACTC+CGG - chr1_3:71272095-71272114 Msa0138410:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 71271940 71275780 71271940 ID=Msa0138410;Name=Msa0138410
chr1_3 mRNA 71271940 71275780 71271940 ID=Msa0138410-mRNA-1;Parent=Msa0138410;Name=Msa0138410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=323|1|1|1|1|1|5|215|312
chr1_3 exon 71271940 71272383 71271940 ID=Msa0138410-mRNA-1:exon:24794;Parent=Msa0138410-mRNA-1
chr1_3 exon 71272902 71273119 71272902 ID=Msa0138410-mRNA-1:exon:24793;Parent=Msa0138410-mRNA-1
chr1_3 exon 71273242 71273478 71273242 ID=Msa0138410-mRNA-1:exon:24792;Parent=Msa0138410-mRNA-1
chr1_3 exon 71274371 71274640 71274371 ID=Msa0138410-mRNA-1:exon:24791;Parent=Msa0138410-mRNA-1
chr1_3 exon 71275473 71275780 71275473 ID=Msa0138410-mRNA-1:exon:24790;Parent=Msa0138410-mRNA-1
chr1_3 five_prime_UTR 71275473 71275780 71275473 ID=Msa0138410-mRNA-1:five_prime_utr;Parent=Msa0138410-mRNA-1
chr1_3 five_prime_UTR 71274626 71274640 71274626 ID=Msa0138410-mRNA-1:five_prime_utr;Parent=Msa0138410-mRNA-1
chr1_3 CDS 71274371 71274625 71274371 ID=Msa0138410-mRNA-1:cds;Parent=Msa0138410-mRNA-1
chr1_3 CDS 71273242 71273478 71273242 ID=Msa0138410-mRNA-1:cds;Parent=Msa0138410-mRNA-1
chr1_3 CDS 71272902 71273119 71272902 ID=Msa0138410-mRNA-1:cds;Parent=Msa0138410-mRNA-1
chr1_3 CDS 71272155 71272383 71272155 ID=Msa0138410-mRNA-1:cds;Parent=Msa0138410-mRNA-1
chr1_3 three_prime_UTR 71271940 71272154 71271940 ID=Msa0138410-mRNA-1:three_prime_utr;Parent=Msa0138410-mRNA-1
Gene Sequence

>Msa0138410

ATGATGACACCAGAGCCGTCAAGGGAGTTGGAGAAACTTGAAATCACTGGTCATCATGTTAGGGGGAGTACTGAATATGTTAGGCTTGCCATATCCGATGAACCAAGGGTTGTTGAAGCTGAAATGCTACAACCTCAAGCTGAATCAAGAATTACATCTTTCAAGTGGTGGATGAAAGTCTCTATATGGGGCTTTGTCATTGTTATACTTTCACTTCTTCTAGTCAAATGGGGAGTGCCCTTTGCTTTTGAAAAGGTTCTTTATCCAGTGATGGAGTGGGAAGCAACTGCCTTTGGCCGACCAGTTCTCGCCCTTGTACTCGTTGCTTCACTGGCCTTATTTCCAGTATTATTAATTCCTTCCGGCCCTTCCATGTGGTTGGCTGGGATGATTTTTGGTTATGGCCTTGGCTTTGTTATAATAATGGTTGGGACAACCATTGGGATGGTCCTCCCTTACCTGATTGGACTTAAGTTCCGTGACCGTATTCATCAATGGTTAGAGAAATGGCCCCAGAATGCTGCAATGATTAGGCTTGCTGGGGAAGGGAGCTGGTTTCATCAATTTCAAGTGGTTGCTCTGTTTCGAACTTCACCTTTTCCCTACACTATATTCAATTATGCTGTAGTAGTGACAGATATGAAGTTTTGGCCCTACTTTTGTGGATCAGTAGCAGGAATGGTGCCAGAAGCTTTTATCTACATCTACAGTGGTAGATTGATAAAGAGTTTGGCTGATGCACAGTATGGGAGGCACCACATGACCACAGTGGAAATCGTATACAACATTATTTCTTTCATCATTGCCGTTATTACCATTGTTGGCTTCACTGTTTATGCAAAAAGGACTCTTAATAAACTCAAAATAGAAGAGGCCAATGAAGAAGCTGCCTCTGTTTCTGGGAATGCTAGTCTTGAGATGAAGAAGGTTTCCCCTTGA
Protein sequence

>Msa0138410

MMTPEPSRELEKLEITGHHVRGSTEYVRLAISDEPRVVEAEMLQPQAESRITSFKWWMKVSIWGFVIVILSLLLVKWGVPFAFEKVLYPVMEWEATAFGRPVLALVLVASLALFPVLLIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYLIGLKFRDRIHQWLEKWPQNAAMIRLAGEGSWFHQFQVVALFRTSPFPYTIFNYAVVVTDMKFWPYFCGSVAGMVPEAFIYIYSGRLIKSLADAQYGRHHMTTVEIVYNIISFIIAVITIVGFTVYAKRTLNKLKIEEANEEAASVSGNASLEMKKVSP*