AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1246700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246700 MtrunA17_Chr4g0071941 96.350 137 5 0 54 190 6 142 1.15e-88 260
Msa1246700 MtrunA17_Chr5g0408251 63.587 184 59 2 8 191 18 193 6.67e-74 224
Msa1246700 MtrunA17_Chr5g0408251 50.575 87 41 2 189 275 29 113 2.25e-14 70.1
Msa1246700 MtrunA17_Chr7g0217621 61.140 193 61 3 6 191 10 195 9.83e-65 201
Msa1246700 MtrunA17_Chr4g0042491 38.462 169 88 6 25 190 17 172 9.97e-21 87.0
Msa1246700 MtrunA17_Chr7g0245371 48.193 83 42 1 108 189 84 166 4.46e-15 71.6
Msa1246700 MtrunA17_Chr2g0329371 29.474 190 113 4 19 189 11 198 5.68e-14 69.3
Msa1246700 MtrunA17_Chr7g0217611 74.419 43 11 0 94 136 1 43 6.34e-13 62.0
Msa1246700 MtrunA17_Chr4g0033601 49.180 61 31 0 129 189 77 137 3.82e-12 62.8
Msa1246700 MtrunA17_Chr3g0139311 49.180 61 31 0 129 189 114 174 6.18e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1246700 AT5G39670.1 47.396 192 88 6 2 190 15 196 5.95e-42 143
Msa1246700 AT3G29000.1 60.577 104 39 1 87 190 85 186 1.77e-34 124
Msa1246700 AT4G20780.1 55.556 72 27 1 123 189 108 179 7.40e-17 77.0
Msa1246700 AT3G47480.1 50.000 72 34 2 120 190 105 175 1.16e-14 70.9
Msa1246700 AT5G44460.1 56.667 60 26 0 130 189 111 170 1.62e-14 70.5
Msa1246700 AT3G59440.1 29.891 184 108 6 19 189 7 182 2.43e-14 70.5
Msa1246700 AT2G43290.1 37.615 109 64 3 83 189 96 202 5.34e-14 69.7
Msa1246700 AT4G03290.1 54.237 59 27 0 131 189 82 140 9.64e-14 67.8
Msa1246700 AT1G05990.1 52.542 59 28 0 131 189 80 138 2.22e-13 66.6
Msa1246700 AT3G07490.1 53.571 56 26 0 134 189 82 137 1.23e-12 64.7
Msa1246700 AT4G12860.1 53.571 56 26 0 134 189 82 137 1.14e-11 62.0
Msa1246700 AT1G21550.1 31.496 127 63 3 84 189 25 148 4.20e-11 60.5

Find 37 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAGAGTTCTTGTTATTT+TGG 0.121543 8_2:-38515941 Msa1246700:CDS
AACTCAACTTCTCCCTTATT+TGG 0.181162 8_2:-38516354 Msa1246700:CDS
CTTCTTTGCCAAATTCATTC+TGG 0.280945 8_2:-38511332 Msa1246700:CDS
CTTCTTTGCCAAATTCATTC+TGG 0.280945 8_2:-38516258 Msa1246700:CDS
CTGAGCTACCAGAATGAATT+TGG 0.286669 8_2:+38511324 None:intergenic
CTGAGCTACCAGAATGAATT+TGG 0.286669 8_2:+38516250 None:intergenic
TTCTGGTAGCTCAGAGGTTA+AGG 0.316701 8_2:-38511315 Msa1246700:CDS
TGAAGAGAATGAGCCTAGTT+TGG 0.350779 8_2:-38516031 Msa1246700:CDS
CTACTTTCCCTGCCATCATT+TGG 0.353592 8_2:+38511263 None:intergenic
GCAAATGTTGGCAGAGATAA+TGG 0.359399 8_2:-38516171 Msa1246700:CDS
TGAAAGAGATGAAGTGAAAA+TGG 0.369654 8_2:-38516139 Msa1246700:CDS
AAGGTCTATGAAACCAAATA+AGG 0.374441 8_2:+38516341 None:intergenic
TGAAAGAGATGAAGTCAAAA+TGG 0.383977 8_2:-38511231 Msa1246700:CDS
CAGAATGAATTTGGCAAAGA+AGG 0.401758 8_2:+38511333 None:intergenic
CAGAATGAATTTGGCAAAGA+AGG 0.401758 8_2:+38516259 None:intergenic
GAGGAACTTGAAGAAAAGTA+TGG 0.414511 8_2:-38516078 Msa1246700:CDS
AGAGGTTAAGGGAGAGAAGA+AGG 0.454798 8_2:-38511303 Msa1246700:CDS
CTATTACTATGTGAAATTTG+AGG 0.460627 8_2:+38516384 None:intergenic
AAACACTTCACAAAGCTCCT+TGG 0.468222 8_2:+38516053 None:intergenic
GAGAAACTTGTGGAAAAGTA+AGG 0.475002 8_2:-38511170 None:intergenic
TCTGGTAGCTCAGAGGTTAA+GGG 0.485459 8_2:-38511314 Msa1246700:CDS
GACTTTAATGAACCAAATGA+TGG 0.503109 8_2:-38511275 Msa1246700:CDS
TTAATGAACCAAATGATGGC+AGG 0.512786 8_2:-38511271 Msa1246700:CDS
AGGTCTATGAAACCAAATAA+GGG 0.516554 8_2:+38516342 None:intergenic
TGCTTCAACTCCTCCAAACT+AGG 0.518183 8_2:+38516018 None:intergenic
AGAGGTAAGAGATGAGAAGA+AGG 0.519907 8_2:-38516229 Msa1246700:CDS
AGAGAATGAGCCTAGTTTGG+AGG 0.522617 8_2:-38516028 Msa1246700:CDS
AAAATGTCAAGTATAGGAAA+AGG 0.526434 8_2:+38516322 None:intergenic
GTGTAGCAGTCAAGAGAATG+AGG 0.533790 8_2:-38516193 Msa1246700:CDS
AGATGAAGTCAAAATGGTGA+TGG 0.534878 8_2:-38511225 Msa1246700:CDS
CAAGAGAATGAGGCAAATGT+TGG 0.535719 8_2:-38516183 Msa1246700:CDS
TGAAGAAAAGTATGGTTCCA+AGG 0.559713 8_2:-38516070 Msa1246700:CDS
TAATGAACCAAATGATGGCA+GGG 0.585278 8_2:-38511270 Msa1246700:CDS
AGATGAAGTGAAAATGGTGA+TGG 0.595216 8_2:-38516133 Msa1246700:CDS
CTCGGTAAAAGAGAAACTTG+TGG 0.656880 8_2:-38511180 Msa1246700:CDS
AATTCATTCTGGTAGCTCAG+AGG 0.663640 8_2:-38511321 Msa1246700:CDS
AATTCATTCTGGTAGCTCAG+AGG 0.688478 8_2:-38516247 Msa1246700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAATATTGTTTTGCT+GGG - chr8_2:38512032-38512051 Msa1246700:intron 15.0%
!! CTTAAATATTGAATAAAGAT+TGG + chr8_2:38512548-38512567 None:intergenic 15.0%
!!! AACAAAATATACATTTTCAT+TGG + chr8_2:38512651-38512670 None:intergenic 15.0%
!!! ATAAATAAAGGTATAATAGT+GGG + chr8_2:38513033-38513052 None:intergenic 15.0%
!!! AATAAATAAAGGTATAATAG+TGG + chr8_2:38513034-38513053 None:intergenic 15.0%
!! AACTATTGTAAGATAAATAT+TGG - chr8_2:38513327-38513346 Msa1246700:intron 15.0%
!! TAGAATTTAGAAAAGTAAAA+AGG + chr8_2:38515596-38515615 None:intergenic 15.0%
!! ATATACTTGAGAAAAAATTG+TGG + chr8_2:38511279-38511298 None:intergenic 20.0%
!!! ACAATTTTTTCTCAAGTATA+TGG - chr8_2:38511278-38511297 Msa1246700:CDS 20.0%
!!! ATTTTTGATGAAAATCAAGA+TGG - chr8_2:38511694-38511713 Msa1246700:intron 20.0%
!! ATACGAATATCCTTAAATAA+GGG + chr8_2:38511785-38511804 None:intergenic 20.0%
!! TATACGAATATCCTTAAATA+AGG + chr8_2:38511786-38511805 None:intergenic 20.0%
!!! GTAATATGCATTCATTTTAA+TGG + chr8_2:38511917-38511936 None:intergenic 20.0%
!! AAATCTTAACATAGATTGAA+CGG + chr8_2:38511963-38511982 None:intergenic 20.0%
!!! CTTTTATAATATTGTTTTGC+TGG - chr8_2:38512031-38512050 Msa1246700:intron 20.0%
!! ACTAGATTAGATTAAATATG+TGG - chr8_2:38512060-38512079 Msa1246700:intron 20.0%
!! TATAATTGATTATCTAGTAG+TGG + chr8_2:38512105-38512124 None:intergenic 20.0%
!! CTAGATAATCAATTATATGT+AGG - chr8_2:38512108-38512127 Msa1246700:intron 20.0%
!!! TTAACTGAAATTTTTCAGAA+TGG + chr8_2:38512482-38512501 None:intergenic 20.0%
!! TCATCATAACATTATTGTTT+CGG + chr8_2:38512705-38512724 None:intergenic 20.0%
!!! TTAAAATATCTTTTCACATG+AGG + chr8_2:38512756-38512775 None:intergenic 20.0%
!! GGATGAAATTCAATAAATAA+AGG + chr8_2:38513045-38513064 None:intergenic 20.0%
!! GAGAAAAACTATAGATTTAA+TGG + chr8_2:38513293-38513312 None:intergenic 20.0%
!! ATAGTCTAAGAATAAGTAAT+AGG + chr8_2:38513413-38513432 None:intergenic 20.0%
!! TTATTCTTAGACTATGTTAT+GGG - chr8_2:38513418-38513437 Msa1246700:intron 20.0%
!!! TATGTATATATGTTGTTTGA+CGG + chr8_2:38513472-38513491 None:intergenic 20.0%
!! AAACATCAAAAGAAAAGAAA+TGG + chr8_2:38513505-38513524 None:intergenic 20.0%
!! TTAACGAATCATTAAAGTAT+AGG - chr8_2:38513543-38513562 Msa1246700:intron 20.0%
!! ACAACTACTTTAATAGTTTA+TGG - chr8_2:38513635-38513654 Msa1246700:intron 20.0%
!! CATTTAATAAATGTTGTATG+TGG + chr8_2:38514328-38514347 None:intergenic 20.0%
!! ATATATGCTAAATATTGAGT+AGG - chr8_2:38514635-38514654 Msa1246700:intron 20.0%
!! TATATGCTAAATATTGAGTA+GGG - chr8_2:38514636-38514655 Msa1246700:intron 20.0%
!!! TATGTATTTTCATATGTATG+TGG + chr8_2:38514919-38514938 None:intergenic 20.0%
!!! TATAAACAGTGATTAGTTAA+TGG - chr8_2:38515139-38515158 Msa1246700:intron 20.0%
!!! TTACATTTTGACTTCATTAT+TGG - chr8_2:38515236-38515255 Msa1246700:intron 20.0%
!!! TTCATTATTGGTTTTTTGAT+TGG - chr8_2:38515248-38515267 Msa1246700:intron 20.0%
!!! TCATTATTGGTTTTTTGATT+GGG - chr8_2:38515249-38515268 Msa1246700:intron 20.0%
!! CTAAAAATTATCGAAAATGT+TGG + chr8_2:38515473-38515492 None:intergenic 20.0%
!! AATCAATTATCGAAAATTGA+CGG + chr8_2:38515515-38515534 None:intergenic 20.0%
! CTATTACTATGTGAAATTTG+AGG + chr8_2:38511184-38511203 None:intergenic 25.0%
! AAAATGTCAAGTATAGGAAA+AGG + chr8_2:38511246-38511265 None:intergenic 25.0%
! TGTTGAAAAATGTCAAGTAT+AGG + chr8_2:38511252-38511271 None:intergenic 25.0%
!!! AAAATGGTGATGGAAAAAAT+GGG - chr8_2:38511442-38511461 Msa1246700:intron 25.0%
!! CAAAAATTGTGATCATCTTT+TGG + chr8_2:38511681-38511700 None:intergenic 25.0%
!! AATTTTACCAAAAATCACCA+TGG + chr8_2:38511839-38511858 None:intergenic 25.0%
!!! GGTGATTTTTGGTAAAATTA+CGG - chr8_2:38511840-38511859 Msa1246700:intron 25.0%
!!! TATGCATTCATTTTAATGGT+TGG + chr8_2:38511913-38511932 None:intergenic 25.0%
! ATTCTATCATAAACGTAGTA+AGG + chr8_2:38512288-38512307 None:intergenic 25.0%
! TACTACGTTTATGATAGAAT+TGG - chr8_2:38512288-38512307 Msa1246700:intron 25.0%
!!! ACTCATAATTTTAATGTGTG+CGG + chr8_2:38512396-38512415 None:intergenic 25.0%
!!! ATTTTTCAGAATGGTACAAA+GGG + chr8_2:38512473-38512492 None:intergenic 25.0%
!!! AATTTTTCAGAATGGTACAA+AGG + chr8_2:38512474-38512493 None:intergenic 25.0%
! GTTTGATCAAGTATAATGAA+TGG + chr8_2:38512602-38512621 None:intergenic 25.0%
!! TATATTTTGTTAGATACCCT+CGG - chr8_2:38512660-38512679 Msa1246700:intron 25.0%
! AAACATAATAAATGCTGCAT+TGG + chr8_2:38513009-38513028 None:intergenic 25.0%
! TCCACTAACTACATTTAATA+AGG - chr8_2:38513076-38513095 Msa1246700:intron 25.0%
! CCACTAACTACATTTAATAA+GGG - chr8_2:38513077-38513096 Msa1246700:intron 25.0%
! GATTTCAATGGTAAAATTAG+TGG + chr8_2:38513117-38513136 None:intergenic 25.0%
! CTAAATAAGACATCAGATAA+TGG - chr8_2:38513209-38513228 Msa1246700:intron 25.0%
!!! CACAATTTTTTCGATAAGTT+GGG + chr8_2:38513255-38513274 None:intergenic 25.0%
! CTTATTCTTAGACTATGTTA+TGG - chr8_2:38513417-38513436 Msa1246700:intron 25.0%
! ATCAAAAGAAAAGAAATGGA+GGG + chr8_2:38513501-38513520 None:intergenic 25.0%
! AAAGTATAGGAATAGTTGTA+TGG - chr8_2:38513556-38513575 Msa1246700:intron 25.0%
!! ATTAAAGTAGTTGTGACTTT+TGG + chr8_2:38513629-38513648 None:intergenic 25.0%
! TCAACTCAAAAGAAAAGAAA+CGG - chr8_2:38513731-38513750 Msa1246700:intron 25.0%
! ATTTCAACTGCTTAAGTAAA+TGG + chr8_2:38513826-38513845 None:intergenic 25.0%
! TAAGTGAGAATAAGAGTAAT+AGG + chr8_2:38513863-38513882 None:intergenic 25.0%
! TGTTAAGAGTCTAATATAAG+AGG - chr8_2:38513931-38513950 Msa1246700:intron 25.0%
! ATCAATCTGTGCTTATAAAT+TGG + chr8_2:38514146-38514165 None:intergenic 25.0%
! GTGATTGCAACAATTATTTA+GGG + chr8_2:38514241-38514260 None:intergenic 25.0%
! AGTGATTGCAACAATTATTT+AGG + chr8_2:38514242-38514261 None:intergenic 25.0%
!!! TAAGCAAAAGTTGACTTTTT+AGG + chr8_2:38514353-38514372 None:intergenic 25.0%
! TTCGTCATTAATCAAAAATG+AGG - chr8_2:38514851-38514870 Msa1246700:intron 25.0%
! ACTCTAACAAAGATGAAAAA+AGG + chr8_2:38514987-38515006 None:intergenic 25.0%
! GTAATACTTACTGTTGTTAT+GGG - chr8_2:38515104-38515123 Msa1246700:intron 25.0%
!! ACTTTTCTAAATTCTATCAC+TGG - chr8_2:38515600-38515619 Msa1246700:intron 25.0%
! TACAATCAACTAATCTTATG+TGG - chr8_2:38515704-38515723 Msa1246700:intron 25.0%
!!! TCTGAAACAAAGATTTGTTT+TGG - chr8_2:38515780-38515799 Msa1246700:intron 25.0%
! TATATTCTACCAATACCATT+AGG - chr8_2:38515899-38515918 Msa1246700:CDS 25.0%
! TCATTATTTATAGGCAAAGA+AGG + chr8_2:38515925-38515944 None:intergenic 25.0%
! ATAGGAAAAATGTTCAACTT+TGG + chr8_2:38516161-38516180 None:intergenic 25.0%
!!! ACAAGTTCTTTTCAAGTTTT+CGG - chr8_2:38516204-38516223 Msa1246700:CDS 25.0%
!!! AAAATGGTGATGGAAAAAAT+GGG - chr8_2:38511442-38511461 Msa1246700:intron 25.0%
!!! ATGGAAAAAATGGGATTTTT+TGG - chr8_2:38511451-38511470 Msa1246700:intron 25.0%
AGGTCTATGAAACCAAATAA+GGG + chr8_2:38511226-38511245 None:intergenic 30.0%
AAGGTCTATGAAACCAAATA+AGG + chr8_2:38511227-38511246 None:intergenic 30.0%
TGAAAGAGATGAAGTGAAAA+TGG - chr8_2:38511426-38511445 Msa1246700:intron 30.0%
!! GAAAATGGTGATGGAAAAAA+TGG - chr8_2:38511441-38511460 Msa1246700:intron 30.0%
! GTTTTTGATGAGAACAAAGA+TGG - chr8_2:38511580-38511599 Msa1246700:intron 30.0%
!!! AGATGGTTTTATTGATGCAA+AGG - chr8_2:38511597-38511616 Msa1246700:intron 30.0%
!!! CAGAGAGTTCTTGTTATTTT+GGG - chr8_2:38511625-38511644 Msa1246700:intron 30.0%
!!! GTTATTTTGGGATTGAAACA+AGG - chr8_2:38511637-38511656 Msa1246700:intron 30.0%
!! GTTTGTTGTTCCCTTATTTA+AGG - chr8_2:38511772-38511791 Msa1246700:intron 30.0%
TTAGTAAATGTTTGCATCCA+TGG - chr8_2:38511819-38511838 Msa1246700:intron 30.0%
ATTGAACGGTATTAATCTGT+TGG + chr8_2:38511949-38511968 None:intergenic 30.0%
!! GTGCTACTTATCAAAGAATA+TGG + chr8_2:38511993-38512012 None:intergenic 30.0%
! CTAGTAGTGGAATCTTTATT+AGG + chr8_2:38512092-38512111 None:intergenic 30.0%
!! TTTTTCAGAATGGTACAAAG+GGG + chr8_2:38512472-38512491 None:intergenic 30.0%
TTCACATGAGGTGTATAAAT+GGG + chr8_2:38512744-38512763 None:intergenic 30.0%
TTTCACATGAGGTGTATAAA+TGG + chr8_2:38512745-38512764 None:intergenic 30.0%
CCTAATACTCTCTTTCATAT+GGG + chr8_2:38512788-38512807 None:intergenic 30.0%
ACCTAATACTCTCTTTCATA+TGG + chr8_2:38512789-38512808 None:intergenic 30.0%
!! ATATGAAAGAGAGTATTAGG+TGG - chr8_2:38512788-38512807 Msa1246700:intron 30.0%
! TTCTTTGCTTTAAGTTAGAG+TGG + chr8_2:38512897-38512916 None:intergenic 30.0%
AAGAGACAATACTTGTAAGA+CGG + chr8_2:38512943-38512962 None:intergenic 30.0%
CCCTTATTAAATGTAGTTAG+TGG + chr8_2:38513080-38513099 None:intergenic 30.0%
!! ATTAGCTGTGTTGATTTCAA+TGG + chr8_2:38513129-38513148 None:intergenic 30.0%
CTCACAATATTAGTCGTTTA+AGG + chr8_2:38513177-38513196 None:intergenic 30.0%
AAACGACTAATATTGTGAGA+CGG - chr8_2:38513178-38513197 Msa1246700:intron 30.0%
!! TCAGATAATGGAGACTTAAA+TGG - chr8_2:38513221-38513240 Msa1246700:intron 30.0%
!! CAGATAATGGAGACTTAAAT+GGG - chr8_2:38513222-38513241 Msa1246700:intron 30.0%
!!! GCACAATTTTTTCGATAAGT+TGG + chr8_2:38513256-38513275 None:intergenic 30.0%
!! TGCATTAATTCTGAGACTTA+AGG + chr8_2:38513386-38513405 None:intergenic 30.0%
CATCAAAAGAAAAGAAATGG+AGG + chr8_2:38513502-38513521 None:intergenic 30.0%
! TTTATGGTGTTTTCCAACAA+GGG - chr8_2:38513651-38513670 Msa1246700:intron 30.0%
GTCATAAGTTCGATAGTATA+AGG + chr8_2:38513804-38513823 None:intergenic 30.0%
! ATTAGTGTACATGTTTGTTG+TGG + chr8_2:38513904-38513923 None:intergenic 30.0%
! GACTTTTAACACGTCTTAAA+AGG - chr8_2:38514186-38514205 Msa1246700:intron 30.0%
TGCAACAATTATTTAGGGAA+GGG + chr8_2:38514236-38514255 None:intergenic 30.0%
TTGCAACAATTATTTAGGGA+AGG + chr8_2:38514237-38514256 None:intergenic 30.0%
! CTTTTGCTTATAATAGTGAC+CGG - chr8_2:38514363-38514382 Msa1246700:intron 30.0%
! TTGATTTGATTCCAAACAAG+AGG + chr8_2:38514458-38514477 None:intergenic 30.0%
! TTTTCTTGTAAGTCCATACT+CGG + chr8_2:38514584-38514603 None:intergenic 30.0%
AGATGTTTAGTTGACAACTT+TGG - chr8_2:38514661-38514680 Msa1246700:intron 30.0%
TTAAGACGAATGAATTGTGT+TGG - chr8_2:38514722-38514741 Msa1246700:intron 30.0%
CGTAATACTTACTGTTGTTA+TGG - chr8_2:38515103-38515122 Msa1246700:intron 30.0%
ACATTGACATATCGGAAAAA+TGG + chr8_2:38515175-38515194 None:intergenic 30.0%
GATTGAAGACATTGACATAT+CGG + chr8_2:38515183-38515202 None:intergenic 30.0%
CAGTCTATGCTACATTATAA+TGG - chr8_2:38515330-38515349 Msa1246700:intron 30.0%
TTAGCATTTCATAGAAGTTC+TGG + chr8_2:38515383-38515402 None:intergenic 30.0%
GTATCTTAATTTCTTGCACT+TGG + chr8_2:38515683-38515702 None:intergenic 30.0%
ATCAACTAATCTTATGTGGA+AGG - chr8_2:38515708-38515727 Msa1246700:intron 30.0%
!! GTTTTGGATAAGAAATAGCA+TGG - chr8_2:38515796-38515815 Msa1246700:intron 30.0%
AAATTCTTTCAAGCTATACG+TGG + chr8_2:38515832-38515851 None:intergenic 30.0%
ACGTATAGCTTGAAAGAATT+TGG - chr8_2:38515831-38515850 Msa1246700:intron 30.0%
CGTATAGCTTGAAAGAATTT+GGG - chr8_2:38515832-38515851 Msa1246700:intron 30.0%
!!! TTGTGTGAATTTTGAGATGT+AGG - chr8_2:38515870-38515889 Msa1246700:CDS 30.0%
TGCAGCTGATCATTATTTAT+AGG + chr8_2:38515934-38515953 None:intergenic 30.0%
TTCATCATGGAGATTCAAAT+AGG + chr8_2:38515998-38516017 None:intergenic 30.0%
TGTTGAAAAACGTTAAGCAT+AGG + chr8_2:38516179-38516198 None:intergenic 30.0%
GACTTTAATGAACCAAATGA+TGG - chr8_2:38516290-38516309 Msa1246700:CDS 30.0%
TGAAAGAGATGAAGTCAAAA+TGG - chr8_2:38516334-38516353 Msa1246700:CDS 30.0%
!! CAAAATGGTGATGGAAAAAA+TGG - chr8_2:38516349-38516368 Msa1246700:CDS 30.0%
AACTCAACTTCTCCCTTATT+TGG - chr8_2:38511211-38511230 Msa1246700:CDS 35.0%
CAGAATGAATTTGGCAAAGA+AGG + chr8_2:38511309-38511328 None:intergenic 35.0%
CTTCTTTGCCAAATTCATTC+TGG - chr8_2:38511307-38511326 Msa1246700:CDS 35.0%
AGATGAAGTGAAAATGGTGA+TGG - chr8_2:38511432-38511451 Msa1246700:intron 35.0%
GAGGAACTTGAAGAAAAGTA+TGG - chr8_2:38511487-38511506 Msa1246700:intron 35.0%
! TGAAGAAAAGTATGGTTCCA+AGG - chr8_2:38511495-38511514 Msa1246700:intron 35.0%
!!! GCAGAGAGTTCTTGTTATTT+TGG - chr8_2:38511624-38511643 Msa1246700:intron 35.0%
AACAAACAAATCAGCAGAAG+TGG + chr8_2:38511759-38511778 None:intergenic 35.0%
! TTTGCATCCATGGTGATTTT+TGG - chr8_2:38511829-38511848 Msa1246700:intron 35.0%
ATATGTAGGATCACAAGTCA+AGG - chr8_2:38512122-38512141 Msa1246700:intron 35.0%
AGACTGAACAAGTGTAACAT+AGG + chr8_2:38512216-38512235 None:intergenic 35.0%
TTACACTTGTTCAGTCTCAA+AGG - chr8_2:38512219-38512238 Msa1246700:intron 35.0%
GTCACGCAACTAAAAAAATG+TGG + chr8_2:38512526-38512545 None:intergenic 35.0%
TCACATGAGGTGTATAAATG+GGG + chr8_2:38512743-38512762 None:intergenic 35.0%
!! CCCATATGAAAGAGAGTATT+AGG - chr8_2:38512785-38512804 Msa1246700:intron 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG + chr8_2:38513066-38513085 None:intergenic 35.0%
AGGTTTGTGCACGATAATTA+AGG + chr8_2:38513157-38513176 None:intergenic 35.0%
!! TTTTTCGATAAGTTGGGTCA+TGG + chr8_2:38513249-38513268 None:intergenic 35.0%
TCTTAGACTATGTTATGGGT+AGG - chr8_2:38513422-38513441 Msa1246700:intron 35.0%
! GTTTATGGTGTTTTCCAACA+AGG - chr8_2:38513650-38513669 Msa1246700:intron 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr8_2:38513667-38513686 None:intergenic 35.0%
ACTCAAAAGAAAAGAAACGG+AGG - chr8_2:38513734-38513753 Msa1246700:intron 35.0%
CTCAAAAGAAAAGAAACGGA+GGG - chr8_2:38513735-38513754 Msa1246700:intron 35.0%
!! TCTGAAAGTGTCTGTTATGA+AGG + chr8_2:38514050-38514069 None:intergenic 35.0%
TAAGTGATGAAATGCAAGTG+TGG + chr8_2:38514101-38514120 None:intergenic 35.0%
! AAGAGGAACGATTTTGGATA+AGG + chr8_2:38514441-38514460 None:intergenic 35.0%
AAGAGCTGATAAGTCAACTT+TGG + chr8_2:38514482-38514501 None:intergenic 35.0%
! GTTGACTTATCAGCTCTTAT+TGG - chr8_2:38514484-38514503 Msa1246700:intron 35.0%
!! AGCTCTGGGGTTTAATTTAT+TGG - chr8_2:38514802-38514821 Msa1246700:intron 35.0%
!! GCTCTGGGGTTTAATTTATT+GGG - chr8_2:38514803-38514822 Msa1246700:intron 35.0%
TTGTGTGATCACAAGACTTT+GGG + chr8_2:38515024-38515043 None:intergenic 35.0%
! GCATGCTACATAACTTTTAG+AGG + chr8_2:38515052-38515071 None:intergenic 35.0%
ACGAATCAACACCAAAGTTT+GGG + chr8_2:38515079-38515098 None:intergenic 35.0%
AACGAATCAACACCAAAGTT+TGG + chr8_2:38515080-38515099 None:intergenic 35.0%
TTCTAAATTCTATCACTGGC+AGG - chr8_2:38515604-38515623 Msa1246700:intron 35.0%
AAGAAATAGCATGGCAATGT+AGG - chr8_2:38515805-38515824 Msa1246700:intron 35.0%
AGAAATAGCATGGCAATGTA+GGG - chr8_2:38515806-38515825 Msa1246700:intron 35.0%
CATACAAGACACTTTCATCA+TGG + chr8_2:38516011-38516030 None:intergenic 35.0%
CAGAATGAATTTGGCAAAGA+AGG + chr8_2:38511309-38511328 None:intergenic 35.0%
CTTCTTTGCCAAATTCATTC+TGG - chr8_2:38511307-38511326 Msa1246700:CDS 35.0%
TTAATGAACCAAATGATGGC+AGG - chr8_2:38516294-38516313 Msa1246700:CDS 35.0%
TAATGAACCAAATGATGGCA+GGG - chr8_2:38516295-38516314 Msa1246700:CDS 35.0%
AGATGAAGTCAAAATGGTGA+TGG - chr8_2:38516340-38516359 Msa1246700:CDS 35.0%
CTGAGCTACCAGAATGAATT+TGG + chr8_2:38511318-38511337 None:intergenic 40.0%
AATTCATTCTGGTAGCTCAG+AGG - chr8_2:38511318-38511337 Msa1246700:CDS 40.0%
AGAGGTAAGAGATGAGAAGA+AGG - chr8_2:38511336-38511355 Msa1246700:CDS 40.0%
CAAGAGAATGAGGCAAATGT+TGG - chr8_2:38511382-38511401 Msa1246700:CDS 40.0%
GCAAATGTTGGCAGAGATAA+TGG - chr8_2:38511394-38511413 Msa1246700:CDS 40.0%
! TTTTTGCAGCTCAGAAAGTG+AGG - chr8_2:38511468-38511487 Msa1246700:intron 40.0%
AAACACTTCACAAAGCTCCT+TGG + chr8_2:38511515-38511534 None:intergenic 40.0%
TGAAGAGAATGAGCCTAGTT+TGG - chr8_2:38511534-38511553 Msa1246700:intron 40.0%
! CAAAGGGGTGTACACATTAA+GGG + chr8_2:38512457-38512476 None:intergenic 40.0%
! ACAAAGGGGTGTACACATTA+AGG + chr8_2:38512458-38512477 None:intergenic 40.0%
ATTGGTGTGTAAGTGAGAGT+GGG + chr8_2:38512633-38512652 None:intergenic 40.0%
!!! AGTGCTTTGAAGTTTTCCGA+GGG + chr8_2:38512679-38512698 None:intergenic 40.0%
!!! AAGTGCTTTGAAGTTTTCCG+AGG + chr8_2:38512680-38512699 None:intergenic 40.0%
ATGAGGTGTATAAATGGGGT+AGG + chr8_2:38512739-38512758 None:intergenic 40.0%
!! AAAGAGAGTATTAGGTGGAG+TGG - chr8_2:38512793-38512812 Msa1246700:intron 40.0%
GACAATACTTGTAAGACGGA+GGG + chr8_2:38512939-38512958 None:intergenic 40.0%
AGACAATACTTGTAAGACGG+AGG + chr8_2:38512940-38512959 None:intergenic 40.0%
GATTTAATGGCCAATGACAG+AGG + chr8_2:38513280-38513299 None:intergenic 40.0%
TGAGCAAATGTGAGACAAGA+TGG - chr8_2:38513958-38513977 Msa1246700:intron 40.0%
!! TGCATTTATGGTGTTGCTAG+CGG + chr8_2:38513985-38514004 None:intergenic 40.0%
CACCATAAATGCATGCTTGT+CGG - chr8_2:38513992-38514011 Msa1246700:intron 40.0%
AAGCACAGATTGATTGTGAG+TGG - chr8_2:38514152-38514171 Msa1246700:intron 40.0%
ACAGATTGATTGTGAGTGGT+TGG - chr8_2:38514156-38514175 Msa1246700:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr8_2:38514366-38514385 Msa1246700:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr8_2:38514367-38514386 Msa1246700:intron 40.0%
AAAAAGTTCATAGCCACGTG+TGG + chr8_2:38514405-38514424 None:intergenic 40.0%
! CCAAACAAGAGGAACGATTT+TGG + chr8_2:38514447-38514466 None:intergenic 40.0%
CCAAAATCGTTCCTCTTGTT+TGG - chr8_2:38514444-38514463 Msa1246700:intron 40.0%
! TTTTCTCGAAGCATAGCTCT+GGG - chr8_2:38514788-38514807 Msa1246700:intron 40.0%
AAGACTTTGGGCACAAGATT+TGG + chr8_2:38515012-38515031 None:intergenic 40.0%
GTTGTGTGATCACAAGACTT+TGG + chr8_2:38515025-38515044 None:intergenic 40.0%
CGAATCAACACCAAAGTTTG+GGG + chr8_2:38515078-38515097 None:intergenic 40.0%
TCAGAATCTGTGAGATGTGT+GGG + chr8_2:38515216-38515235 None:intergenic 40.0%
ATCAGAATCTGTGAGATGTG+TGG + chr8_2:38515217-38515236 None:intergenic 40.0%
ATGAAATGCTAACCAGAACC+AGG - chr8_2:38515391-38515410 Msa1246700:intron 40.0%
TGAAATGCTAACCAGAACCA+GGG - chr8_2:38515392-38515411 Msa1246700:intron 40.0%
ATGTGATCAAGTTTAGACCC+TGG + chr8_2:38515412-38515431 None:intergenic 40.0%
CAAAGAAGGCCTAATGGTAT+TGG + chr8_2:38515911-38515930 None:intergenic 40.0%
TATAGGCAAAGAAGGCCTAA+TGG + chr8_2:38515917-38515936 None:intergenic 40.0%
! GCTCTTTTCACTCTCATATC+AGG - chr8_2:38516133-38516152 Msa1246700:CDS 40.0%
CTGAGCTACCAGAATGAATT+TGG + chr8_2:38511318-38511337 None:intergenic 40.0%
AATTCATTCTGGTAGCTCAG+AGG - chr8_2:38511318-38511337 Msa1246700:CDS 40.0%
!!! AATGGGATTTTTTGGCAGCT+CGG - chr8_2:38516367-38516386 Msa1246700:CDS 40.0%
CTCGGTAAAAGAGAAACTTG+TGG - chr8_2:38516385-38516404 Msa1246700:CDS 40.0%
GTGTAGCAGTCAAGAGAATG+AGG - chr8_2:38511372-38511391 Msa1246700:CDS 45.0%
AGAGAATGAGCCTAGTTTGG+AGG - chr8_2:38511537-38511556 Msa1246700:intron 45.0%
TGCTTCAACTCCTCCAAACT+AGG + chr8_2:38511550-38511569 None:intergenic 45.0%
CATTGGTGTGTAAGTGAGAG+TGG + chr8_2:38512634-38512653 None:intergenic 45.0%
TGATACGTTGACCAGGTATG+TGG + chr8_2:38512874-38512893 None:intergenic 45.0%
!!! ACGGAGGGAGTACTCTTTTA+TGG + chr8_2:38512924-38512943 None:intergenic 45.0%
CGACTAATATTGTGAGACGG+AGG - chr8_2:38513181-38513200 Msa1246700:intron 45.0%
AAATTGTGCGCCTCTGTCAT+TGG - chr8_2:38513267-38513286 Msa1246700:intron 45.0%
!! TTGTTTGACGGACTGCGAAA+TGG + chr8_2:38513460-38513479 None:intergenic 45.0%
!! GCATTTATGGTGTTGCTAGC+GGG + chr8_2:38513984-38514003 None:intergenic 45.0%
TGCCGACAAGCATGCATTTA+TGG + chr8_2:38513997-38514016 None:intergenic 45.0%
AGAGTAGATTTGAGCCAGGA+TGG + chr8_2:38514022-38514041 None:intergenic 45.0%
AGAGAGAGTAGATTTGAGCC+AGG + chr8_2:38514026-38514045 None:intergenic 45.0%
TTGGATAAGGAGAGCAGCAT+GGG + chr8_2:38514428-38514447 None:intergenic 45.0%
TTTGGATAAGGAGAGCAGCA+TGG + chr8_2:38514429-38514448 None:intergenic 45.0%
! GTTTTCTCGAAGCATAGCTC+TGG - chr8_2:38514787-38514806 Msa1246700:intron 45.0%
! TTTCTCGAAGCATAGCTCTG+GGG - chr8_2:38514789-38514808 Msa1246700:intron 45.0%
TCAACACCAAAGTTTGGGGA+GGG + chr8_2:38515074-38515093 None:intergenic 45.0%
ATCAACACCAAAGTTTGGGG+AGG + chr8_2:38515075-38515094 None:intergenic 45.0%
TCAAGTTTAGACCCTGGTTC+TGG + chr8_2:38515406-38515425 None:intergenic 45.0%
! TTGAGCCAAAGATGACTTGC+CGG - chr8_2:38516049-38516068 Msa1246700:CDS 45.0%
ATGCTGCCTGAAAAGCAAGA+AGG - chr8_2:38516073-38516092 Msa1246700:CDS 45.0%
TGCTGCCTGAAAAGCAAGAA+GGG - chr8_2:38516074-38516093 Msa1246700:CDS 45.0%
!! CAACACCCTTCTTGCTTTTC+AGG + chr8_2:38516082-38516101 None:intergenic 45.0%
!!! CAAGAAGGGTGTTGTTTTGC+TGG - chr8_2:38516088-38516107 Msa1246700:CDS 45.0%
! GTTTTGCTGGCAGTTGTCAT+TGG - chr8_2:38516101-38516120 Msa1246700:CDS 45.0%
TTCTGGTAGCTCAGAGGTTA+AGG - chr8_2:38516250-38516269 Msa1246700:CDS 45.0%
TCTGGTAGCTCAGAGGTTAA+GGG - chr8_2:38516251-38516270 Msa1246700:CDS 45.0%
AGAGGTTAAGGGAGAGAAGA+AGG - chr8_2:38516262-38516281 Msa1246700:CDS 45.0%
CTACTTTCCCTGCCATCATT+TGG + chr8_2:38516305-38516324 None:intergenic 45.0%
GAGTATTAGGTGGAGTGGTG+AGG - chr8_2:38512798-38512817 Msa1246700:intron 50.0%
CCACACACAAACGTGACATG+TGG + chr8_2:38512833-38512852 None:intergenic 50.0%
CCACATGTCACGTTTGTGTG+TGG - chr8_2:38512830-38512849 Msa1246700:intron 50.0%
CATGTCACGTTTGTGTGTGG+TGG - chr8_2:38512833-38512852 Msa1246700:intron 50.0%
AGAGATGTGTGCCACATACC+TGG - chr8_2:38512860-38512879 Msa1246700:intron 50.0%
AGAGTGGTGATACGTTGACC+AGG + chr8_2:38512881-38512900 None:intergenic 50.0%
TGGTCAATGTGTACTCCCTC+CGG + chr8_2:38514385-38514404 None:intergenic 50.0%
GAGTACACATTGACCACACG+TGG - chr8_2:38514389-38514408 Msa1246700:intron 50.0%
TGTTGACAGAGAGCCGAGTA+TGG - chr8_2:38514568-38514587 Msa1246700:intron 50.0%
!! TTGCTTTTCAGGCAGCATGC+CGG + chr8_2:38516071-38516090 None:intergenic 50.0%
AGCATGCCCTCCCCAAACTT+TGG - chr8_2:38515065-38515084 Msa1246700:intron 55.0%
GCATGCCGGCAAGTCATCTT+TGG + chr8_2:38516057-38516076 None:intergenic 55.0%
TGCTTGTCGGCAAGCCATCC+TGG - chr8_2:38514005-38514024 Msa1246700:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 38511172 38516415 38511172 ID=Msa1246700;Name=Msa1246700
chr8_2 mRNA 38511172 38516415 38511172 ID=Msa1246700-mRNA-1;Parent=Msa1246700;Name=Msa1246700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|275
chr8_2 exon 38515849 38516415 38515849 ID=Msa1246700-mRNA-1:exon:11989;Parent=Msa1246700-mRNA-1
chr8_2 exon 38511172 38511432 38511172 ID=Msa1246700-mRNA-1:exon:11988;Parent=Msa1246700-mRNA-1
chr8_2 CDS 38515849 38516415 38515849 ID=Msa1246700-mRNA-1:cds;Parent=Msa1246700-mRNA-1
chr8_2 CDS 38511172 38511432 38511172 ID=Msa1246700-mRNA-1:cds;Parent=Msa1246700-mRNA-1
Gene Sequence

>Msa1246700

ATGGCTCTTCCTCAAATTTCACATAGTAATAGCATTAGCAACTCAACTTCTCCCTTATTTGGTTTCATAGACCTTTTCCTATACTTGACATTTTTCAACAAAATCCACAATTTTTTCTCAAGTATATGGTTTTTCCTTCTTTGCCAAATTCATTCTGGTAGCTCAGAGGTAAGAGATGAGAAGAAGGTTTCAGAATCTAAGTGTAGCAGTCAAGAGAATGAGGCAAATGTTGGCAGAGATAATGGTTACATGATTGAAAGAGATGAAGTGAAAATGGTGATGGAAAAAATGGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTGAAGAAAAGTATGGTTCCAAGGAGCTTTGTGAAGTGTTTGAAGAGAATGAGCCTAGTTTGGAGGAGTTGAAGCAAGCTTTTGATGTTTTTGATGAGAACAAAGATGGTTTTATTGATGCAAAGGAATTGCAGAGAGTTCTTGTTATTTTGGGATTGAAACAAGGATCAGAATTTGAGAATTGCCAAAAGATGATCACAATTTTTGATGAAAATCAAGATGGAAGAATTGATTTCATTGAGTTTGCTCCAAAGTTGAACATTTTTCCTATGCTTAACGTTTTTCAACAAATTCACAAGTTCTTTTCAAGTTTTCGGATTTTCCTTCTTTGCCAAATTCATTCTGGTAGCTCAGAGGTTAAGGGAGAGAAGAAGGTTTTAGACTTTAATGAACCAAATGATGGCAGGGAAAGTAGTGTGATCATTGAAAGAGATGAAGTCAAAATGGTGATGGAAAAAATGGGATTTTTTGGCAGCTCGGTAAAAGAGAAACTTGTGGAAAAGTAA

Protein sequence

>Msa1246700

MALPQISHSNSISNSTSPLFGFIDLFLYLTFFNKIHNFFSSIWFFLLCQIHSGSSEVRDEKKVSESKCSSQENEANVGRDNGYMIERDEVKMVMEKMGFFCSSESEELEEKYGSKELCEVFEENEPSLEELKQAFDVFDENKDGFIDAKELQRVLVILGLKQGSEFENCQKMITIFDENQDGRIDFIEFAPKLNIFPMLNVFQQIHKFFSSFRIFLLCQIHSGSSEVKGEKKVLDFNEPNDGRESSVIIERDEVKMVMEKMGFFGSSVKEKLVEK*