Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245890 | XP_013463484.2 | 64.474 | 76 | 25 | 1 | 3 | 76 | 173 | 248 | 1.60e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245890 | sp|P36908|CHIA_CICAR | 42.708 | 96 | 53 | 1 | 3 | 98 | 169 | 262 | 3.88e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245890 | A0A2Z6NNY9 | 64.474 | 76 | 25 | 1 | 3 | 76 | 145 | 220 | 4.77e-26 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195110 | Msa0245890 | 0.858732 | 6.729948e-63 | -8.615850e-47 |
| Msa0245890 | Msa0245900 | 0.807426 | 5.083271e-50 | -8.615850e-47 |
| Msa0245890 | Msa0322530 | 0.851515 | 8.438463e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245890 | MtrunA17_Chr2g0300141 | 65.789 | 76 | 24 | 1 | 3 | 76 | 172 | 247 | 1.55e-29 | 107 |
| Msa0245890 | MtrunA17_Chr2g0300101 | 64.474 | 76 | 25 | 1 | 3 | 76 | 172 | 247 | 6.88e-29 | 105 |
| Msa0245890 | MtrunA17_Chr2g0300081 | 64.474 | 76 | 25 | 1 | 3 | 76 | 174 | 249 | 3.21e-28 | 104 |
| Msa0245890 | MtrunA17_Chr2g0300051 | 65.333 | 75 | 24 | 1 | 4 | 76 | 170 | 244 | 1.21e-27 | 102 |
| Msa0245890 | MtrunA17_Chr2g0300171 | 67.188 | 64 | 19 | 1 | 15 | 76 | 1 | 64 | 1.66e-25 | 92.8 |
| Msa0245890 | MtrunA17_Chr2g0300181 | 55.844 | 77 | 32 | 1 | 2 | 76 | 173 | 249 | 6.20e-22 | 87.4 |
| Msa0245890 | MtrunA17_Chr1g0202231 | 48.649 | 74 | 36 | 1 | 3 | 76 | 174 | 245 | 1.38e-19 | 81.3 |
| Msa0245890 | MtrunA17_Chr1g0202241 | 47.297 | 74 | 37 | 1 | 3 | 76 | 172 | 243 | 1.95e-19 | 80.5 |
| Msa0245890 | MtrunA17_Chr1g0202261 | 42.268 | 97 | 51 | 3 | 3 | 98 | 174 | 266 | 6.21e-19 | 79.3 |
| Msa0245890 | MtrunA17_Chr7g0274861 | 40.206 | 97 | 54 | 3 | 3 | 98 | 151 | 244 | 9.96e-17 | 72.8 |
| Msa0245890 | MtrunA17_Chr8g0361941 | 40.816 | 98 | 52 | 4 | 3 | 98 | 174 | 267 | 2.03e-16 | 72.4 |
| Msa0245890 | MtrunA17_Chr2g0331781 | 39.175 | 97 | 55 | 3 | 3 | 98 | 189 | 282 | 3.17e-16 | 72.0 |
| Msa0245890 | MtrunA17_Chr7g0240891 | 38.144 | 97 | 56 | 3 | 3 | 98 | 174 | 267 | 1.27e-15 | 70.1 |
| Msa0245890 | MtrunA17_Chr5g0418461 | 37.113 | 97 | 57 | 3 | 3 | 98 | 170 | 263 | 2.16e-14 | 66.6 |
| Msa0245890 | MtrunA17_Chr1g0202281 | 34.694 | 98 | 60 | 3 | 2 | 98 | 185 | 279 | 3.53e-14 | 66.2 |
| Msa0245890 | MtrunA17_Chr7g0275231 | 46.774 | 62 | 29 | 2 | 3 | 63 | 177 | 235 | 1.49e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0245890 | AT5G24090.1 | 41.333 | 75 | 41 | 2 | 3 | 76 | 178 | 250 | 2.18e-14 | 67.0 |
Find 15 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGACACAGCTATCAAAAT+TGG | 0.209040 | 2_2:-25873229 | Msa0245890:CDS |
| ATAATCTGGTATAATACATT+TGG | 0.358892 | 2_2:+25873255 | None:intergenic |
| CATAAATCCTCCACACTTAC+GGG | 0.365978 | 2_2:+25872998 | None:intergenic |
| CTACATTGCTCTTTCAATCA+TGG | 0.388911 | 2_2:-25873135 | Msa0245890:CDS |
| TCATAAATCCTCCACACTTA+CGG | 0.424053 | 2_2:+25872997 | None:intergenic |
| TTAGAAATGAGATCATTTGA+TGG | 0.435572 | 2_2:+25873053 | None:intergenic |
| TAATCTGGTATAATACATTT+GGG | 0.448476 | 2_2:+25873256 | None:intergenic |
| TCTTTCAATCATGGGATGCT+TGG | 0.452854 | 2_2:-25873126 | Msa0245890:CDS |
| GCTTGATCATATTGACATGA+AGG | 0.458306 | 2_2:+25873169 | None:intergenic |
| TACATTGCTCTTTCAATCAT+GGG | 0.479487 | 2_2:-25873134 | Msa0245890:CDS |
| ATTTGATGGTATAAAGATGT+TGG | 0.481871 | 2_2:+25873067 | None:intergenic |
| GCTGTGTCAAGGTAATAATC+TGG | 0.490248 | 2_2:+25873241 | None:intergenic |
| CTTGATCATATTGACATGAA+GGG | 0.522737 | 2_2:+25873170 | None:intergenic |
| ACTTGTTATACCCGTAAGTG+TGG | 0.596573 | 2_2:-25873008 | Msa0245890:CDS |
| TGTTATACCCGTAAGTGTGG+AGG | 0.628922 | 2_2:-25873005 | Msa0245890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATTAAACATTGA+AGG | + | chr2_2:25875191-25875210 | None:intergenic | 10.0% |
| !! | AATGTTAAAAATCTTAAATA+TGG | + | chr2_2:25875317-25875336 | None:intergenic | 10.0% |
| !!! | ACATAAAATCTTTTGAATTT+TGG | + | chr2_2:25873588-25873607 | None:intergenic | 15.0% |
| !! | TAAAAAAACAAAAATTAGTG+AGG | - | chr2_2:25873930-25873949 | Msa0245890:intron | 15.0% |
| !! | TTTATATTAAGAAGAAAAAG+AGG | - | chr2_2:25874156-25874175 | Msa0245890:intron | 15.0% |
| !! | ATAAAATCATGTTACATTAT+CGG | - | chr2_2:25874318-25874337 | Msa0245890:intron | 15.0% |
| !! | AAAAAAAAAACAGTGTTAAA+CGG | + | chr2_2:25874524-25874543 | None:intergenic | 15.0% |
| !! | TAAAGTAATTAAAGCTTAAT+TGG | - | chr2_2:25874703-25874722 | Msa0245890:intron | 15.0% |
| !! | ATTAAGAAAGAAAAATGATC+AGG | - | chr2_2:25873068-25873087 | Msa0245890:CDS | 20.0% |
| !!! | AAAATCTTTTGAATTTTGGT+GGG | + | chr2_2:25873584-25873603 | None:intergenic | 20.0% |
| !!! | TAAAATCTTTTGAATTTTGG+TGG | + | chr2_2:25873585-25873604 | None:intergenic | 20.0% |
| !!! | AAACAGATTGAGTTTTATTT+TGG | - | chr2_2:25873835-25873854 | Msa0245890:intron | 20.0% |
| !!! | TATTCTTTTTAATCACTACT+AGG | + | chr2_2:25874077-25874096 | None:intergenic | 20.0% |
| !! | ATTGAATGCACAAAATTATA+TGG | - | chr2_2:25874623-25874642 | Msa0245890:intron | 20.0% |
| !! | CACTTATAAATTGTTTAATC+CGG | + | chr2_2:25874986-25875005 | None:intergenic | 20.0% |
| !! | TCAGTTCATCAATATTATAT+TGG | - | chr2_2:25875104-25875123 | Msa0245890:intron | 20.0% |
| !! | GTGTTTATGAGTAAAAAAAA+AGG | + | chr2_2:25875578-25875597 | None:intergenic | 20.0% |
| !! | TAATCTGGTATAATACATTT+GGG | + | chr2_2:25875639-25875658 | None:intergenic | 20.0% |
| !! | ATAATCTGGTATAATACATT+TGG | + | chr2_2:25875640-25875659 | None:intergenic | 20.0% |
| !!! | TTGATGGTTGTTTGATTTTT+AGG | - | chr2_2:25873414-25873433 | Msa0245890:intron | 25.0% |
| !!! | TGATGGTTGTTTGATTTTTA+GGG | - | chr2_2:25873415-25873434 | Msa0245890:intron | 25.0% |
| !!! | TTTGATTTTTAGGGCAATAA+AGG | - | chr2_2:25873424-25873443 | Msa0245890:intron | 25.0% |
| !!! | AAATCTTTTGAATTTTGGTG+GGG | + | chr2_2:25873583-25873602 | None:intergenic | 25.0% |
| ! | TTAGATTGATGCTTTCTAAA+AGG | - | chr2_2:25873663-25873682 | Msa0245890:intron | 25.0% |
| !!! | TGCTTTCTAAAAGGATATTT+TGG | - | chr2_2:25873672-25873691 | Msa0245890:intron | 25.0% |
| !!! | TTTCTAAAAGGATATTTTGG+AGG | - | chr2_2:25873675-25873694 | Msa0245890:intron | 25.0% |
| !!! | TTCTAAAAGGATATTTTGGA+GGG | - | chr2_2:25873676-25873695 | Msa0245890:intron | 25.0% |
| ! | ATGTAGAAAATAGGGATAAT+TGG | - | chr2_2:25873765-25873784 | Msa0245890:intron | 25.0% |
| ! | TTTAGTGACAGAATTAAAGA+GGG | + | chr2_2:25873983-25874002 | None:intergenic | 25.0% |
| ! | ATTTAGTGACAGAATTAAAG+AGG | + | chr2_2:25873984-25874003 | None:intergenic | 25.0% |
| ! | TACTAGGAAAAGCAAAATTT+GGG | + | chr2_2:25874061-25874080 | None:intergenic | 25.0% |
| ! | ACAATATACAAGAACAAGAA+TGG | - | chr2_2:25874497-25874516 | Msa0245890:intron | 25.0% |
| !!! | TTGAGTTTTAAAACTATGCT+AGG | + | chr2_2:25874814-25874833 | None:intergenic | 25.0% |
| ! | AGTTTACATAGATGTTAAAC+CGG | - | chr2_2:25874964-25874983 | Msa0245890:intron | 25.0% |
| ! | ATAAAACAAAAAGCTATCAG+TGG | - | chr2_2:25875227-25875246 | Msa0245890:intron | 25.0% |
| !!! | TTTTTAAAACTATGCTTCCT+AGG | - | chr2_2:25875520-25875539 | Msa0245890:intron | 25.0% |
| !!! | TTTTAAAACTATGCTTCCTA+GGG | - | chr2_2:25875521-25875540 | Msa0245890:intron | 25.0% |
| ! | ATGGGTGAAAATATAACTTT+CGG | - | chr2_2:25875551-25875570 | Msa0245890:intron | 25.0% |
| !! | TAGCTACATATTATGTTTTC+TGG | - | chr2_2:25875796-25875815 | Msa0245890:intron | 25.0% |
| !! | AGCTACATATTATGTTTTCT+GGG | - | chr2_2:25875797-25875816 | Msa0245890:intron | 25.0% |
| !! | ATTTGATGGTATAAAGATGT+TGG | + | chr2_2:25875828-25875847 | None:intergenic | 25.0% |
| ! | TTAGAAATGAGATCATTTGA+TGG | + | chr2_2:25875842-25875861 | None:intergenic | 25.0% |
| ATCTATAACCATGGTAAAGT+TGG | + | chr2_2:25873042-25873061 | None:intergenic | 30.0% | |
| AATCTAACGATCTATAACCA+TGG | + | chr2_2:25873051-25873070 | None:intergenic | 30.0% | |
| AAAGAAAAATGATCAGGATC+AGG | - | chr2_2:25873074-25873093 | Msa0245890:CDS | 30.0% | |
| ! | TGCATGAAGAAAAGGTTTTA+TGG | - | chr2_2:25873617-25873636 | Msa0245890:intron | 30.0% |
| !! | ATGAAGAAAAGGTTTTATGG+CGG | - | chr2_2:25873620-25873639 | Msa0245890:intron | 30.0% |
| CATTGTGGATGTAGAAAATA+GGG | - | chr2_2:25873757-25873776 | Msa0245890:intron | 30.0% | |
| AAAATAGGGATAATTGGAAG+TGG | - | chr2_2:25873771-25873790 | Msa0245890:intron | 30.0% | |
| TTAGTGAGGAAAATTTAGTG+AGG | - | chr2_2:25873944-25873963 | Msa0245890:intron | 30.0% | |
| TAGTGAGGAAAATTTAGTGA+GGG | - | chr2_2:25873945-25873964 | Msa0245890:intron | 30.0% | |
| AAATTTCCTCACAAATTCCT+TGG | + | chr2_2:25874014-25874033 | None:intergenic | 30.0% | |
| CTACTAGGAAAAGCAAAATT+TGG | + | chr2_2:25874062-25874081 | None:intergenic | 30.0% | |
| !!! | AAACGCGCGTTTTTTTTTTT+TGG | + | chr2_2:25875352-25875371 | None:intergenic | 30.0% |
| !!! | GGAAGCATAGTTTTAAAAAC+CGG | + | chr2_2:25875519-25875538 | None:intergenic | 30.0% |
| ! | AAACACTGACTAACAATTAC+AGG | - | chr2_2:25875592-25875611 | Msa0245890:intron | 30.0% |
| CTTGATCATATTGACATGAA+GGG | + | chr2_2:25875725-25875744 | None:intergenic | 30.0% | |
| TACATTGCTCTTTCAATCAT+GGG | - | chr2_2:25875758-25875777 | Msa0245890:intron | 30.0% | |
| ! | GCTACATATTATGTTTTCTG+GGG | - | chr2_2:25875798-25875817 | Msa0245890:intron | 30.0% |
| !! | TAACAAGTTTTGTCAATGTG+AGG | + | chr2_2:25875872-25875891 | None:intergenic | 30.0% |
| AAGGTTTACATGAAAACGTG+GGG | + | chr2_2:25873141-25873160 | None:intergenic | 35.0% | |
| CAAGGTTTACATGAAAACGT+GGG | + | chr2_2:25873142-25873161 | None:intergenic | 35.0% | |
| ! | CACGTTTTCATGTAAACCTT+GGG | - | chr2_2:25873141-25873160 | Msa0245890:CDS | 35.0% |
| GTCTTCTCTTATGTATGTAC+TGG | - | chr2_2:25873173-25873192 | Msa0245890:CDS | 35.0% | |
| ATCTGATGAAACATCACTAC+AGG | - | chr2_2:25873384-25873403 | Msa0245890:intron | 35.0% | |
| TCTGATGAAACATCACTACA+GGG | - | chr2_2:25873385-25873404 | Msa0245890:intron | 35.0% | |
| TTAGGGCAATAAAGGAAACA+TGG | - | chr2_2:25873432-25873451 | Msa0245890:intron | 35.0% | |
| AATAAAGGAAACATGGCAGT+TGG | - | chr2_2:25873439-25873458 | Msa0245890:intron | 35.0% | |
| ATCATCTTCACAAAAGAACC+TGG | + | chr2_2:25873532-25873551 | None:intergenic | 35.0% | |
| ! | AAACCTTTTCTTCATGCATC+AGG | + | chr2_2:25873615-25873634 | None:intergenic | 35.0% |
| !! | TGAAGAAAAGGTTTTATGGC+GGG | - | chr2_2:25873621-25873640 | Msa0245890:intron | 35.0% |
| ! | CCTATTTTCTACATCCACAA+TGG | + | chr2_2:25873759-25873778 | None:intergenic | 35.0% |
| CCATTGTGGATGTAGAAAAT+AGG | - | chr2_2:25873756-25873775 | Msa0245890:intron | 35.0% | |
| ! | GTTTTTGACACTATTGCATC+AGG | - | chr2_2:25873793-25873812 | Msa0245890:intron | 35.0% |
| ! | GTCACTAAATTTTGTGACCA+AGG | - | chr2_2:25873994-25874013 | Msa0245890:intron | 35.0% |
| AGGAAAAGCAAAATTTGGGA+GGG | + | chr2_2:25874057-25874076 | None:intergenic | 35.0% | |
| TAGGAAAAGCAAAATTTGGG+AGG | + | chr2_2:25874058-25874077 | None:intergenic | 35.0% | |
| TTTAATCCGATTCAGTCATG+CGG | + | chr2_2:25874907-25874926 | None:intergenic | 35.0% | |
| ATGACTGAATCGGATTAAAC+CGG | - | chr2_2:25874908-25874927 | Msa0245890:intron | 35.0% | |
| ATCTTAAATATGGCTCACAC+AGG | + | chr2_2:25875307-25875326 | None:intergenic | 35.0% | |
| !!! | CATAGTTTTAAAAACCGGCT+CGG | + | chr2_2:25875514-25875533 | None:intergenic | 35.0% |
| !! | CAATTTTGATAGCTGTGTCA+AGG | + | chr2_2:25875665-25875684 | None:intergenic | 35.0% |
| CTTGACACAGCTATCAAAAT+TGG | - | chr2_2:25875663-25875682 | Msa0245890:intron | 35.0% | |
| GCTTGATCATATTGACATGA+AGG | + | chr2_2:25875726-25875745 | None:intergenic | 35.0% | |
| CTACATTGCTCTTTCAATCA+TGG | - | chr2_2:25875757-25875776 | Msa0245890:intron | 35.0% | |
| TCATAAATCCTCCACACTTA+CGG | + | chr2_2:25875898-25875917 | None:intergenic | 35.0% | |
| TGGGGAATCAAAGTGTAACT+AGG | + | chr2_2:25873123-25873142 | None:intergenic | 40.0% | |
| CCAAGGTTTACATGAAAACG+TGG | + | chr2_2:25873143-25873162 | None:intergenic | 40.0% | |
| ! | CCACGTTTTCATGTAAACCT+TGG | - | chr2_2:25873140-25873159 | Msa0245890:CDS | 40.0% |
| CACTACAGGGTTATACTTGA+TGG | - | chr2_2:25873398-25873417 | Msa0245890:intron | 40.0% | |
| AGTTGGTTGAAGGTAGTGAA+AGG | - | chr2_2:25873456-25873475 | Msa0245890:intron | 40.0% | |
| GTTGGTTGAAGGTAGTGAAA+GGG | - | chr2_2:25873457-25873476 | Msa0245890:intron | 40.0% | |
| TGAGCTAATTAGAAGCAACC+AGG | - | chr2_2:25873511-25873530 | Msa0245890:intron | 40.0% | |
| !! | TTGAATTTTGGTGGGGACTA+CGG | + | chr2_2:25873576-25873595 | None:intergenic | 40.0% |
| TGTCCTGATGCATGAAGAAA+AGG | - | chr2_2:25873609-25873628 | Msa0245890:intron | 40.0% | |
| AGGGAAACTATTGTCTGTTG+TGG | - | chr2_2:25873695-25873714 | Msa0245890:intron | 40.0% | |
| TGTCATTGCTTATGCCATTG+TGG | - | chr2_2:25873742-25873761 | Msa0245890:intron | 40.0% | |
| TTGTGACCAAGGAATTTGTG+AGG | - | chr2_2:25874005-25874024 | Msa0245890:intron | 40.0% | |
| TTTGGGAGGGAAATTAGTGA+CGG | + | chr2_2:25874044-25874063 | None:intergenic | 40.0% | |
| GGAATCAAACCTGTTACCTA+TGG | + | chr2_2:25875282-25875301 | None:intergenic | 40.0% | |
| TAAATATGGCTCACACAGGA+AGG | + | chr2_2:25875303-25875322 | None:intergenic | 40.0% | |
| TGCATGGGCGATTCAATAAT+TGG | - | chr2_2:25875436-25875455 | Msa0245890:intron | 40.0% | |
| GCTGTGTCAAGGTAATAATC+TGG | + | chr2_2:25875654-25875673 | None:intergenic | 40.0% | |
| TCTTTCAATCATGGGATGCT+TGG | - | chr2_2:25875766-25875785 | Msa0245890:intron | 40.0% | |
| !! | ACTTGTTATACCCGTAAGTG+TGG | - | chr2_2:25875884-25875903 | Msa0245890:intron | 40.0% |
| CATAAATCCTCCACACTTAC+GGG | + | chr2_2:25875897-25875916 | None:intergenic | 40.0% | |
| ! | CATGGTAAAGTTGGTCGTAC+AGG | + | chr2_2:25873033-25873052 | None:intergenic | 45.0% |
| CTGTACGACCAACTTTACCA+TGG | - | chr2_2:25873031-25873050 | Msa0245890:CDS | 45.0% | |
| AGAAGACGCTTTGATTCCCA+AGG | + | chr2_2:25873160-25873179 | None:intergenic | 45.0% | |
| GAAACATGGCAGTTGGTTGA+AGG | - | chr2_2:25873446-25873465 | Msa0245890:intron | 45.0% | |
| GGTAGTGAAAGGGAGTAGTA+TGG | - | chr2_2:25873467-25873486 | Msa0245890:intron | 45.0% | |
| !! | AAGGTTTTATGGCGGGATGT+AGG | - | chr2_2:25873628-25873647 | Msa0245890:intron | 45.0% |
| ACACTATTGCATCAGGAGCT+AGG | - | chr2_2:25873800-25873819 | Msa0245890:intron | 45.0% | |
| TGTCAAGATGCCTAACACAG+TGG | + | chr2_2:25874480-25874499 | None:intergenic | 45.0% | |
| ! | ACTCAAACCAGTCATCGACT+CGG | - | chr2_2:25874828-25874847 | Msa0245890:intron | 45.0% |
| GTTGAACCGCATGACTGAAT+CGG | - | chr2_2:25874898-25874917 | Msa0245890:intron | 45.0% | |
| TCGGATTAAACCGGATGACT+CGG | - | chr2_2:25874917-25874936 | Msa0245890:intron | 45.0% | |
| AGTCATACAACCGAGTCATC+CGG | + | chr2_2:25874930-25874949 | None:intergenic | 45.0% | |
| !! | GATGACTCGGTTGTATGACT+CGG | - | chr2_2:25874930-25874949 | Msa0245890:intron | 45.0% |
| AAGGATGCTATTCAACCGCT+GGG | + | chr2_2:25875253-25875272 | None:intergenic | 45.0% | |
| CATCAAACCAGTTGTCGAAC+CGG | + | chr2_2:25875398-25875417 | None:intergenic | 45.0% | |
| !! | CGACAACTGGTTTGATGACA+AGG | - | chr2_2:25875401-25875420 | Msa0245890:intron | 45.0% |
| AATCGCCCATGCAATTGACT+CGG | + | chr2_2:25875429-25875448 | None:intergenic | 45.0% | |
| !!! | TTTTAAAAACCGGCTCGGAC+CGG | + | chr2_2:25875509-25875528 | None:intergenic | 45.0% |
| TGCTTCCTAGGGCTATATCA+TGG | - | chr2_2:25875532-25875551 | Msa0245890:intron | 45.0% | |
| GCTTCCTAGGGCTATATCAT+GGG | - | chr2_2:25875533-25875552 | Msa0245890:intron | 45.0% | |
| TTCACCCATGATATAGCCCT+AGG | + | chr2_2:25875540-25875559 | None:intergenic | 45.0% | |
| TGTTATACCCGTAAGTGTGG+AGG | - | chr2_2:25875887-25875906 | Msa0245890:intron | 45.0% | |
| !!! | AAAACATTTAATATTTTTAT+TGG | - | chr2_2:25874096-25874115 | Msa0245890:intron | 5.0% |
| !!! | AAACATTTAATATTTTTATT+GGG | - | chr2_2:25874097-25874116 | Msa0245890:intron | 5.0% |
| !!! | AATGTTTTATTTTTAATATT+AGG | + | chr2_2:25875085-25875104 | None:intergenic | 5.0% |
| !! | GGGGACTACGGAATTTTGGT+GGG | + | chr2_2:25873564-25873583 | None:intergenic | 50.0% |
| ! | TGGGGACTACGGAATTTTGG+TGG | + | chr2_2:25873565-25873584 | None:intergenic | 50.0% |
| ! | TGGTGGGGACTACGGAATTT+TGG | + | chr2_2:25873568-25873587 | None:intergenic | 50.0% |
| AAATTTGCACCCCCTAACCC+AGG | - | chr2_2:25874442-25874461 | Msa0245890:intron | 50.0% | |
| AATTTGCACCCCCTAACCCA+GGG | - | chr2_2:25874443-25874462 | Msa0245890:intron | 50.0% | |
| ATATCCAGGACCCTGGGTTA+GGG | + | chr2_2:25874456-25874475 | None:intergenic | 50.0% | |
| CCTAACACAGTGGCATATCC+AGG | + | chr2_2:25874470-25874489 | None:intergenic | 50.0% | |
| CCTGGATATGCCACTGTGTT+AGG | - | chr2_2:25874467-25874486 | Msa0245890:intron | 50.0% | |
| TGAGTCAATGGTCGAACCAC+TGG | - | chr2_2:25874868-25874887 | Msa0245890:intron | 50.0% | |
| AAAAGCTATCAGTGGCCCAG+CGG | - | chr2_2:25875235-25875254 | Msa0245890:intron | 50.0% | |
| CAAGGATGCTATTCAACCGC+TGG | + | chr2_2:25875254-25875273 | None:intergenic | 50.0% | |
| TAGCATCCTTGTGCTGCCAT+AGG | - | chr2_2:25875263-25875282 | Msa0245890:intron | 50.0% | |
| CTGTTACCTATGGCAGCACA+AGG | + | chr2_2:25875272-25875291 | None:intergenic | 50.0% | |
| CTTGTGCTGCCATAGGTAAC+AGG | - | chr2_2:25875270-25875289 | Msa0245890:intron | 50.0% | |
| ! | TTTGACCCGGTTTTCCGTAC+CGG | - | chr2_2:25875376-25875395 | Msa0245890:intron | 50.0% |
| AACCAGTTGTCGAACCGGTA+CGG | + | chr2_2:25875393-25875412 | None:intergenic | 50.0% | |
| !! | AAGGCACCGAGTCAATTGCA+TGG | - | chr2_2:25875420-25875439 | Msa0245890:intron | 50.0% |
| !! | AGGCACCGAGTCAATTGCAT+GGG | - | chr2_2:25875421-25875440 | Msa0245890:intron | 50.0% |
| GCGGGATGTAGGTCGTTGAT+TGG | - | chr2_2:25873639-25873658 | Msa0245890:intron | 55.0% | |
| ! | TATCCAGGACCCTGGGTTAG+GGG | + | chr2_2:25874455-25874474 | None:intergenic | 55.0% |
| CATATCCAGGACCCTGGGTT+AGG | + | chr2_2:25874457-25874476 | None:intergenic | 55.0% | |
| AGTGGCATATCCAGGACCCT+GGG | + | chr2_2:25874462-25874481 | None:intergenic | 55.0% | |
| !! | AACCAGTCATCGACTCGGCA+AGG | - | chr2_2:25874833-25874852 | Msa0245890:intron | 55.0% |
| !! | CCATTGACTCAGTGACCCAG+TGG | + | chr2_2:25874859-25874878 | None:intergenic | 55.0% |
| CCACTGGGTCACTGAGTCAA+TGG | - | chr2_2:25874856-25874875 | Msa0245890:intron | 55.0% | |
| TGGTCGAACCACTGGATCAC+TGG | - | chr2_2:25874876-25874895 | Msa0245890:intron | 55.0% | |
| CGGTTCAACCAGTGATCCAG+TGG | + | chr2_2:25874887-25874906 | None:intergenic | 55.0% | |
| GGTACGGAAAACCGGGTCAA+AGG | + | chr2_2:25875377-25875396 | None:intergenic | 55.0% | |
| TCGAACCGGTACGGAAAACC+GGG | + | chr2_2:25875384-25875403 | None:intergenic | 55.0% | |
| GTCGAACCGGTACGGAAAAC+CGG | + | chr2_2:25875385-25875404 | None:intergenic | 55.0% | |
| !! | TTCCGTACCGGTTCGACAAC+TGG | - | chr2_2:25875388-25875407 | Msa0245890:intron | 55.0% |
| GCTCGAACCAGTCATGTGTC+CGG | - | chr2_2:25875458-25875477 | Msa0245890:intron | 55.0% | |
| CCAGTCATGTGTCCGGTTCA+CGG | - | chr2_2:25875465-25875484 | Msa0245890:intron | 55.0% | |
| TCATGTGTCCGGTTCACGGT+CGG | - | chr2_2:25875469-25875488 | Msa0245890:intron | 55.0% | |
| ! | ATCCAGGACCCTGGGTTAGG+GGG | + | chr2_2:25874454-25874473 | None:intergenic | 60.0% |
| CAGTGGCATATCCAGGACCC+TGG | + | chr2_2:25874463-25874482 | None:intergenic | 60.0% | |
| !! | ATCGACTCGGCAAGGCCACT+GGG | - | chr2_2:25874841-25874860 | Msa0245890:intron | 60.0% |
| CGCGCGTTTGACCTTTGACC+CGG | - | chr2_2:25875363-25875382 | Msa0245890:intron | 60.0% | |
| CCGTGAACCGGACACATGAC+TGG | + | chr2_2:25875468-25875487 | None:intergenic | 60.0% | |
| GGCCTTGCCGAGTCGATGAC+TGG | + | chr2_2:25874838-25874857 | None:intergenic | 65.0% | |
| !! | CATCGACTCGGCAAGGCCAC+TGG | - | chr2_2:25874840-25874859 | Msa0245890:intron | 65.0% |
| TGTCCGGTTCACGGTCGGAC+CGG | - | chr2_2:25875474-25875493 | Msa0245890:intron | 65.0% | |
| CAACCGGTCCGACCGTGAAC+CGG | + | chr2_2:25875480-25875499 | None:intergenic | 65.0% | |
| CACGGTCGGACCGGTTGAAC+CGG | - | chr2_2:25875483-25875502 | Msa0245890:intron | 65.0% | |
| !! | AAAAACCGGCTCGGACCGGC+CGG | + | chr2_2:25875505-25875524 | None:intergenic | 65.0% |
| CACCCCCTAACCCAGGGTCC+TGG | - | chr2_2:25874449-25874468 | Msa0245890:intron | 70.0% | |
| GTCGGACCGGTTGAACCGGC+CGG | - | chr2_2:25875487-25875506 | Msa0245890:intron | 70.0% | |
| ! | CTCGGACCGGCCGGTTCAAC+CGG | + | chr2_2:25875496-25875515 | None:intergenic | 70.0% |
| TTGAACCGGCCGGTCCGAGC+CGG | - | chr2_2:25875497-25875516 | Msa0245890:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 25872997 | 25875917 | 25872997 | ID=Msa0245890;Name=Msa0245890 |
| chr2_2 | mRNA | 25872997 | 25875917 | 25872997 | ID=Msa0245890-mRNA-1;Parent=Msa0245890;Name=Msa0245890-mRNA-1;_AED=0.41;_eAED=0.44;_QI=0|0|0|0.5|0|0|2|0|103 |
| chr2_2 | exon | 25875910 | 25875917 | 25875910 | ID=Msa0245890-mRNA-1:exon:9722;Parent=Msa0245890-mRNA-1 |
| chr2_2 | exon | 25872997 | 25873300 | 25872997 | ID=Msa0245890-mRNA-1:exon:9721;Parent=Msa0245890-mRNA-1 |
| chr2_2 | CDS | 25875910 | 25875917 | 25875910 | ID=Msa0245890-mRNA-1:cds;Parent=Msa0245890-mRNA-1 |
| chr2_2 | CDS | 25872997 | 25873300 | 25872997 | ID=Msa0245890-mRNA-1:cds;Parent=Msa0245890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
