Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322530 | XP_013463484.2 | 65.789 | 76 | 24 | 1 | 3 | 76 | 173 | 248 | 3.42e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322530 | sp|P36908|CHIA_CICAR | 42.708 | 96 | 53 | 1 | 3 | 98 | 169 | 262 | 3.36e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195080 | Msa0322530 | 0.860744 | 1.668292e-63 | -8.615850e-47 |
| Msa0195100 | Msa0322530 | 0.863599 | 2.218504e-64 | -8.615850e-47 |
| Msa0195110 | Msa0322530 | 0.884013 | 2.754689e-71 | -8.615850e-47 |
| Msa0202800 | Msa0322530 | 0.850568 | 1.561358e-60 | -8.615850e-47 |
| Msa0230320 | Msa0322530 | 0.854155 | 1.485688e-61 | -8.615850e-47 |
| Msa0245890 | Msa0322530 | 0.851515 | 8.438463e-61 | -8.615850e-47 |
| Msa0245900 | Msa0322530 | 0.848738 | 5.060800e-60 | -8.615850e-47 |
| Msa0284480 | Msa0322530 | 0.859869 | 3.068531e-63 | -8.615850e-47 |
| Msa0308630 | Msa0322530 | 0.860490 | 1.992437e-63 | -8.615850e-47 |
| Msa0322530 | Msa0322540 | 0.883344 | 4.859589e-71 | -8.615850e-47 |
| Msa0322530 | Msa0389770 | 0.861459 | 1.010951e-63 | -8.615850e-47 |
| Msa0322530 | Msa1423780 | 0.860627 | 1.810840e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322530 | MtrunA17_Chr2g0300141 | 67.105 | 76 | 23 | 1 | 3 | 76 | 172 | 247 | 3.55e-30 | 109 |
| Msa0322530 | MtrunA17_Chr2g0300101 | 64.474 | 76 | 25 | 1 | 3 | 76 | 172 | 247 | 4.02e-29 | 106 |
| Msa0322530 | MtrunA17_Chr2g0300081 | 65.789 | 76 | 24 | 1 | 3 | 76 | 174 | 249 | 6.85e-29 | 105 |
| Msa0322530 | MtrunA17_Chr2g0300051 | 66.667 | 75 | 23 | 1 | 4 | 76 | 170 | 244 | 2.69e-28 | 104 |
| Msa0322530 | MtrunA17_Chr2g0300171 | 68.750 | 64 | 18 | 1 | 15 | 76 | 1 | 64 | 3.46e-26 | 94.7 |
| Msa0322530 | MtrunA17_Chr2g0300181 | 54.545 | 77 | 33 | 1 | 2 | 76 | 173 | 249 | 1.63e-21 | 86.3 |
| Msa0322530 | MtrunA17_Chr1g0202231 | 48.649 | 74 | 36 | 1 | 3 | 76 | 174 | 245 | 1.12e-19 | 81.3 |
| Msa0322530 | MtrunA17_Chr1g0202241 | 47.297 | 74 | 37 | 1 | 3 | 76 | 172 | 243 | 1.76e-19 | 80.5 |
| Msa0322530 | MtrunA17_Chr1g0202261 | 41.237 | 97 | 52 | 3 | 3 | 98 | 174 | 266 | 1.48e-18 | 78.2 |
| Msa0322530 | MtrunA17_Chr7g0274861 | 40.206 | 97 | 54 | 3 | 3 | 98 | 151 | 244 | 9.46e-17 | 72.8 |
| Msa0322530 | MtrunA17_Chr8g0361941 | 40.816 | 98 | 52 | 4 | 3 | 98 | 174 | 267 | 1.81e-16 | 72.4 |
| Msa0322530 | MtrunA17_Chr2g0331781 | 39.175 | 97 | 55 | 3 | 3 | 98 | 189 | 282 | 2.81e-16 | 72.4 |
| Msa0322530 | MtrunA17_Chr7g0240891 | 38.144 | 97 | 56 | 3 | 3 | 98 | 174 | 267 | 1.02e-15 | 70.5 |
| Msa0322530 | MtrunA17_Chr5g0418461 | 37.113 | 97 | 57 | 3 | 3 | 98 | 170 | 263 | 2.14e-14 | 66.6 |
| Msa0322530 | MtrunA17_Chr1g0202281 | 34.694 | 98 | 60 | 3 | 2 | 98 | 185 | 279 | 3.64e-14 | 66.2 |
| Msa0322530 | MtrunA17_Chr7g0275231 | 46.774 | 62 | 29 | 2 | 3 | 63 | 177 | 235 | 1.28e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0322530 | AT5G24090.1 | 41.333 | 75 | 41 | 2 | 3 | 76 | 178 | 250 | 2.30e-14 | 67.0 |
Find 15 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGACACAGCTATCAAAAT+TGG | 0.209040 | 2_4:-25432571 | Msa0322530:CDS |
| ATAATCTGGCATAATACATT+TGG | 0.349220 | 2_4:+25432597 | None:intergenic |
| CATAAATCCTCCACACTTAC+GGG | 0.365978 | 2_4:+25432340 | None:intergenic |
| CTACATTGCTCTTTCAATCA+TGG | 0.388911 | 2_4:-25432477 | Msa0322530:CDS |
| TCATAAATCCTCCACACTTA+CGG | 0.424053 | 2_4:+25432339 | None:intergenic |
| TAATCTGGCATAATACATTT+GGG | 0.435074 | 2_4:+25432598 | None:intergenic |
| TTAGAAATGAGATCATTTGA+TGG | 0.435572 | 2_4:+25432395 | None:intergenic |
| TCTTTCAATCATGGGATGCT+TGG | 0.452854 | 2_4:-25432468 | Msa0322530:CDS |
| GCTTGATCATATTGACATGA+AGG | 0.458306 | 2_4:+25432511 | None:intergenic |
| TACATTGCTCTTTCAATCAT+GGG | 0.479487 | 2_4:-25432476 | Msa0322530:CDS |
| ATTTGATGGTATAAAGATGT+TGG | 0.481871 | 2_4:+25432409 | None:intergenic |
| GCTGTGTCAAGGTAATAATC+TGG | 0.485515 | 2_4:+25432583 | None:intergenic |
| CTTGATCATATTGACATGAA+GGG | 0.522737 | 2_4:+25432512 | None:intergenic |
| ACTTGTCATACCCGTAAGTG+TGG | 0.621407 | 2_4:-25432350 | Msa0322530:CDS |
| TGTCATACCCGTAAGTGTGG+AGG | 0.657655 | 2_4:-25432347 | Msa0322530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTATAAAAAAATA+TGG | - | chr2_4:25434168-25434187 | Msa0322530:intron | 0.0% |
| !! | TAATAATAATTAAACATTGA+AGG | + | chr2_4:25434378-25434397 | None:intergenic | 10.0% |
| !! | AAAATCTTAAATCTTAAATA+TGG | + | chr2_4:25434549-25434568 | None:intergenic | 10.0% |
| !!! | ACATAAAATCTTTTGAATTT+TGG | + | chr2_4:25432932-25432951 | None:intergenic | 15.0% |
| !! | TTTATATTAAGAAGAAAAAG+AGG | - | chr2_4:25433337-25433356 | Msa0322530:intron | 15.0% |
| !! | ATAAAATCATGTTACATTAT+CGG | - | chr2_4:25433499-25433518 | Msa0322530:intron | 15.0% |
| !! | AAAAAAAAAACAGTGTTAAA+CGG | + | chr2_4:25433658-25433677 | None:intergenic | 15.0% |
| !! | TAAAGTAATTAAAGCTTAAT+TGG | - | chr2_4:25433833-25433852 | Msa0322530:intron | 15.0% |
| !! | ATTAAGAAAGAAAAATGATC+AGG | - | chr2_4:25432410-25432429 | Msa0322530:CDS | 20.0% |
| !! | TAGGTACATAATATACATAA+AGG | + | chr2_4:25432455-25432474 | None:intergenic | 20.0% |
| !!! | TAAAATCTTTTGAATTTTGG+TGG | + | chr2_4:25432929-25432948 | None:intergenic | 20.0% |
| !!! | AAACAGATTGAGTTTTATTT+TGG | - | chr2_4:25433179-25433198 | Msa0322530:intron | 20.0% |
| !! | ATTGAATGCACAAAATTATA+TGG | - | chr2_4:25433753-25433772 | Msa0322530:intron | 20.0% |
| !! | TGGATATAAATTGTTTAATC+CGG | + | chr2_4:25434116-25434135 | None:intergenic | 20.0% |
| !! | TCAGTTCATCAATATTATAT+TGG | - | chr2_4:25434297-25434316 | Msa0322530:intron | 20.0% |
| !! | GTGTTTATGAGTAAAAAAAA+TGG | + | chr2_4:25434819-25434838 | None:intergenic | 20.0% |
| !!! | TTTGATTTTTAGTGCAACAA+AGG | - | chr2_4:25432775-25432794 | Msa0322530:intron | 25.0% |
| ! | ATGTAGAAAATAGGGATAAT+TGG | - | chr2_4:25433109-25433128 | Msa0322530:intron | 25.0% |
| ! | ACAATATACAAGAACAAGAA+TGG | - | chr2_4:25433631-25433650 | Msa0322530:intron | 25.0% |
| ! | AGTTTACATAGATGTTAAAC+CGG | - | chr2_4:25434094-25434113 | Msa0322530:intron | 25.0% |
| ! | ATAAAACAAATAGCTATCAG+TGG | - | chr2_4:25434414-25434433 | Msa0322530:intron | 25.0% |
| ! | TAAATCTTAAATATGGCTCA+TGG | + | chr2_4:25434503-25434522 | None:intergenic | 25.0% |
| ! | TAAATCTTAAATATGGCTCA+TGG | + | chr2_4:25434503-25434522 | None:intergenic | 25.0% |
| !!! | ACGAGCGTTTTTTTTTTTTT+TGG | + | chr2_4:25434591-25434610 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACTATGCTTCCT+AGG | - | chr2_4:25434761-25434780 | Msa0322530:intron | 25.0% |
| !!! | TTTTAAAACTATGCTTCCTA+GGG | - | chr2_4:25434762-25434781 | Msa0322530:intron | 25.0% |
| ! | ATGGGTGAAAATATAACTTT+CGG | - | chr2_4:25434792-25434811 | Msa0322530:intron | 25.0% |
| ! | TAATCTGGCATAATACATTT+GGG | + | chr2_4:25434880-25434899 | None:intergenic | 25.0% |
| ! | ATAATCTGGCATAATACATT+TGG | + | chr2_4:25434881-25434900 | None:intergenic | 25.0% |
| !! | TAGCTACATATTATGTTTTC+TGG | - | chr2_4:25435037-25435056 | Msa0322530:intron | 25.0% |
| !! | AGCTACATATTATGTTTTCT+GGG | - | chr2_4:25435038-25435057 | Msa0322530:intron | 25.0% |
| !! | ATTTGATGGTATAAAGATGT+TGG | + | chr2_4:25435069-25435088 | None:intergenic | 25.0% |
| ! | TTAGAAATGAGATCATTTGA+TGG | + | chr2_4:25435083-25435102 | None:intergenic | 25.0% |
| ATCTATAACCATCGTAAAGT+TGG | + | chr2_4:25432384-25432403 | None:intergenic | 30.0% | |
| ! | TGCATGTAGAAAAGGTTTTA+TGG | - | chr2_4:25432961-25432980 | Msa0322530:intron | 30.0% |
| !! | ATGTAGAAAAGGTTTTATGG+CGG | - | chr2_4:25432964-25432983 | Msa0322530:intron | 30.0% |
| !! | TGCTTTCTGAAAGGATATTT+TGG | - | chr2_4:25433016-25433035 | Msa0322530:intron | 30.0% |
| !! | TTTCTGAAAGGATATTTTGG+AGG | - | chr2_4:25433019-25433038 | Msa0322530:intron | 30.0% |
| !! | TTCTGAAAGGATATTTTGGA+GGG | - | chr2_4:25433020-25433039 | Msa0322530:intron | 30.0% |
| CATTGTGGATGTAGAAAATA+GGG | - | chr2_4:25433101-25433120 | Msa0322530:intron | 30.0% | |
| AAAATAGGGATAATTGGAAG+TGG | - | chr2_4:25433115-25433134 | Msa0322530:intron | 30.0% | |
| !!! | CCTAGCATAGTTTTAAAACT+CGG | - | chr2_4:25433941-25433960 | Msa0322530:intron | 30.0% |
| !!! | GGAAGCATAGTTTTAAAAAC+CGG | + | chr2_4:25434760-25434779 | None:intergenic | 30.0% |
| ! | AAACACTGACTAACAATTAC+AGG | - | chr2_4:25434833-25434852 | Msa0322530:intron | 30.0% |
| CTTGATCATATTGACATGAA+GGG | + | chr2_4:25434966-25434985 | None:intergenic | 30.0% | |
| TACATTGCTCTTTCAATCAT+GGG | - | chr2_4:25434999-25435018 | Msa0322530:intron | 30.0% | |
| ! | GCTACATATTATGTTTTCTG+GGG | - | chr2_4:25435039-25435058 | Msa0322530:intron | 30.0% |
| AAGGTTTACATGAAAACGTG+GGG | + | chr2_4:25432492-25432511 | None:intergenic | 35.0% | |
| CAAGGTTTACATGAAAACGT+GGG | + | chr2_4:25432493-25432512 | None:intergenic | 35.0% | |
| ! | CACGTTTTCATGTAAACCTT+GGG | - | chr2_4:25432492-25432511 | Msa0322530:CDS | 35.0% |
| GTCTTCTCTTATGTATGTAC+TGG | - | chr2_4:25432524-25432543 | Msa0322530:CDS | 35.0% | |
| GATCTGATGAAACATCACTA+CGG | - | chr2_4:25432734-25432753 | Msa0322530:intron | 35.0% | |
| ATCTGATGAAACATCACTAC+GGG | - | chr2_4:25432735-25432754 | Msa0322530:intron | 35.0% | |
| TTAGTGCAACAAAGGAAACA+TGG | - | chr2_4:25432783-25432802 | Msa0322530:intron | 35.0% | |
| TGAGCTAATTAGAAGTAACC+AGG | - | chr2_4:25432862-25432881 | Msa0322530:intron | 35.0% | |
| ATCATCTTCACAAAAGAACC+TGG | + | chr2_4:25432883-25432902 | None:intergenic | 35.0% | |
| ! | AAACCTTTTCTACATGCATC+AGG | + | chr2_4:25432959-25432978 | None:intergenic | 35.0% |
| !! | TGTAGAAAAGGTTTTATGGC+GGG | - | chr2_4:25432965-25432984 | Msa0322530:intron | 35.0% |
| TTAGATGGATGCTTTCTGAA+AGG | - | chr2_4:25433007-25433026 | Msa0322530:intron | 35.0% | |
| ! | CCTATTTTCTACATCCACAA+TGG | + | chr2_4:25433103-25433122 | None:intergenic | 35.0% |
| CCATTGTGGATGTAGAAAAT+AGG | - | chr2_4:25433100-25433119 | Msa0322530:intron | 35.0% | |
| ! | GTTTTTGACACTATTGCATC+AGG | - | chr2_4:25433137-25433156 | Msa0322530:intron | 35.0% |
| !!! | CCGAGTTTTAAAACTATGCT+AGG | + | chr2_4:25433944-25433963 | None:intergenic | 35.0% |
| !!! | CATAGTTTTAAAACTCGGAC+CGG | - | chr2_4:25433946-25433965 | Msa0322530:intron | 35.0% |
| TTTAATCCGATTCAGTCATG+CGG | + | chr2_4:25434037-25434056 | None:intergenic | 35.0% | |
| ATGACTGAATCGGATTAAAC+CGG | - | chr2_4:25434038-25434057 | Msa0322530:intron | 35.0% | |
| !!! | CATAGTTTTAAAAACCGGCT+CGG | + | chr2_4:25434755-25434774 | None:intergenic | 35.0% |
| !! | CAATTTTGATAGCTGTGTCA+AGG | + | chr2_4:25434906-25434925 | None:intergenic | 35.0% |
| CTTGACACAGCTATCAAAAT+TGG | - | chr2_4:25434904-25434923 | Msa0322530:intron | 35.0% | |
| GCTTGATCATATTGACATGA+AGG | + | chr2_4:25434967-25434986 | None:intergenic | 35.0% | |
| CTACATTGCTCTTTCAATCA+TGG | - | chr2_4:25434998-25435017 | Msa0322530:intron | 35.0% | |
| !! | TGACAAGTTTTGTCAATGTG+AGG | + | chr2_4:25435113-25435132 | None:intergenic | 35.0% |
| TCATAAATCCTCCACACTTA+CGG | + | chr2_4:25435139-25435158 | None:intergenic | 35.0% | |
| TGGGGAATCAAAGTGTAACT+AGG | + | chr2_4:25432474-25432493 | None:intergenic | 40.0% | |
| CCAAGGTTTACATGAAAACG+TGG | + | chr2_4:25432494-25432513 | None:intergenic | 40.0% | |
| ! | CCACGTTTTCATGTAAACCT+TGG | - | chr2_4:25432491-25432510 | Msa0322530:CDS | 40.0% |
| TCTGATGAAACATCACTACG+GGG | - | chr2_4:25432736-25432755 | Msa0322530:intron | 40.0% | |
| AACAAAGGAAACATGGCAGT+TGG | - | chr2_4:25432790-25432809 | Msa0322530:intron | 40.0% | |
| AGTTGGTTGAAGGTAGTGAA+AGG | - | chr2_4:25432807-25432826 | Msa0322530:intron | 40.0% | |
| GTTGGTTGAAGGTAGTGAAA+GGG | - | chr2_4:25432808-25432827 | Msa0322530:intron | 40.0% | |
| TGGCGACTATGGAATTTGTA+TGG | + | chr2_4:25432909-25432928 | None:intergenic | 40.0% | |
| !!! | TTGAATTTTGGTGGCGACTA+TGG | + | chr2_4:25432920-25432939 | None:intergenic | 40.0% |
| TGTCCTGATGCATGTAGAAA+AGG | - | chr2_4:25432953-25432972 | Msa0322530:intron | 40.0% | |
| !! | AGGTCGTTGATTGGTTTAGA+TGG | - | chr2_4:25432992-25433011 | Msa0322530:intron | 40.0% |
| AGGGAAACTATTGTCTGTTG+TGG | - | chr2_4:25433039-25433058 | Msa0322530:intron | 40.0% | |
| TGTCATTGCTTATGCCATTG+TGG | - | chr2_4:25433086-25433105 | Msa0322530:intron | 40.0% | |
| AAGGATGCTATTCAACAGCT+GGG | + | chr2_4:25434440-25434459 | None:intergenic | 40.0% | |
| ATCGAAGAACCTGTTACCTA+TGG | + | chr2_4:25434469-25434488 | None:intergenic | 40.0% | |
| GCTGTGTCAAGGTAATAATC+TGG | + | chr2_4:25434895-25434914 | None:intergenic | 40.0% | |
| TCTTTCAATCATGGGATGCT+TGG | - | chr2_4:25435007-25435026 | Msa0322530:intron | 40.0% | |
| CATAAATCCTCCACACTTAC+GGG | + | chr2_4:25435138-25435157 | None:intergenic | 40.0% | |
| ! | CATCGTAAAGTTGGTCGTAC+AGG | + | chr2_4:25432375-25432394 | None:intergenic | 45.0% |
| CTGTACGACCAACTTTACGA+TGG | - | chr2_4:25432373-25432392 | Msa0322530:CDS | 45.0% | |
| AGAAGACGCTTTGATTCCCA+AGG | + | chr2_4:25432511-25432530 | None:intergenic | 45.0% | |
| CACTACGGGGTTATACTTGA+TGG | - | chr2_4:25432749-25432768 | Msa0322530:intron | 45.0% | |
| GAAACATGGCAGTTGGTTGA+AGG | - | chr2_4:25432797-25432816 | Msa0322530:intron | 45.0% | |
| GGTAGTGAAAGGGAGTAGTA+TGG | - | chr2_4:25432818-25432837 | Msa0322530:intron | 45.0% | |
| !! | AAGGTTTTATGGCGGGATGT+AGG | - | chr2_4:25432972-25432991 | Msa0322530:intron | 45.0% |
| ACACTATTGCATCAGGAGCT+AGG | - | chr2_4:25433144-25433163 | Msa0322530:intron | 45.0% | |
| AAAATTTGCACCCCTGACCT+AGG | - | chr2_4:25433576-25433595 | Msa0322530:intron | 45.0% | |
| AAATTTGCACCCCTGACCTA+GGG | - | chr2_4:25433577-25433596 | Msa0322530:intron | 45.0% | |
| TGTCAAGATGCCTAACACAG+TGG | + | chr2_4:25433614-25433633 | None:intergenic | 45.0% | |
| GTTGAACCGCATGACTGAAT+CGG | - | chr2_4:25434028-25434047 | Msa0322530:intron | 45.0% | |
| TCGGATTAAACCGGATGACT+CGG | - | chr2_4:25434047-25434066 | Msa0322530:intron | 45.0% | |
| AGTCATACAACCGAGTCATC+CGG | + | chr2_4:25434060-25434079 | None:intergenic | 45.0% | |
| !! | GATGACTCGGTTGTATGACT+CGG | - | chr2_4:25434060-25434079 | Msa0322530:intron | 45.0% |
| CAAGGATGCTATTCAACAGC+TGG | + | chr2_4:25434441-25434460 | None:intergenic | 45.0% | |
| !! | TTTGACCTGGTTTTCCGTAC+CGG | - | chr2_4:25434617-25434636 | Msa0322530:intron | 45.0% |
| TGCATGGGCGATCCAATAAT+TGG | - | chr2_4:25434677-25434696 | Msa0322530:intron | 45.0% | |
| !! | GACTGGTTCGAGCCAATTAT+TGG | + | chr2_4:25434692-25434711 | None:intergenic | 45.0% |
| !!! | TTTTAAAAACCGGCTCGGAC+CGG | + | chr2_4:25434750-25434769 | None:intergenic | 45.0% |
| TGCTTCCTAGGGCTATATCA+TGG | - | chr2_4:25434773-25434792 | Msa0322530:intron | 45.0% | |
| GCTTCCTAGGGCTATATCAT+GGG | - | chr2_4:25434774-25434793 | Msa0322530:intron | 45.0% | |
| TTCACCCATGATATAGCCCT+AGG | + | chr2_4:25434781-25434800 | None:intergenic | 45.0% | |
| ACTTGTCATACCCGTAAGTG+TGG | - | chr2_4:25435125-25435144 | Msa0322530:intron | 45.0% | |
| !!! | AAAACATTTAATATTTTTAT+TGG | - | chr2_4:25433277-25433296 | Msa0322530:intron | 5.0% |
| !!! | AAACATTTAATATTTTTATT+GGG | - | chr2_4:25433278-25433297 | Msa0322530:intron | 5.0% |
| !! | ATTTATTATATTTATAGTTA+TGG | + | chr2_4:25434136-25434155 | None:intergenic | 5.0% |
| !!! | AATGTTTTATTTTTAATATT+AGG | + | chr2_4:25434278-25434297 | None:intergenic | 5.0% |
| !!! | AAAATTTTAAATCTTAAATA+TGG | + | chr2_4:25434510-25434529 | None:intergenic | 5.0% |
| ATATCCAGGACCCTAGGTCA+GGG | + | chr2_4:25433590-25433609 | None:intergenic | 50.0% | |
| CCTAACACAGTGGCATATCC+AGG | + | chr2_4:25433604-25433623 | None:intergenic | 50.0% | |
| CCTGGATATGCCACTGTGTT+AGG | - | chr2_4:25433601-25433620 | Msa0322530:intron | 50.0% | |
| TAGCATCCTTGTGCTGCCAT+AGG | - | chr2_4:25434450-25434469 | Msa0322530:intron | 50.0% | |
| CTGTTACCTATGGCAGCACA+AGG | + | chr2_4:25434459-25434478 | None:intergenic | 50.0% | |
| CTTGTGCTGCCATAGGTAAC+AGG | - | chr2_4:25434457-25434476 | Msa0322530:intron | 50.0% | |
| ATATGGCTCATGGCTCACAC+AGG | + | chr2_4:25434493-25434512 | None:intergenic | 50.0% | |
| GGTACGGAAAACCAGGTCAA+AGG | + | chr2_4:25434618-25434637 | None:intergenic | 50.0% | |
| CATCAAACCGGTTGTCGAAC+CGG | + | chr2_4:25434639-25434658 | None:intergenic | 50.0% | |
| !! | CGACAACCGGTTTGATGACA+TGG | - | chr2_4:25434642-25434661 | Msa0322530:intron | 50.0% |
| !! | ACGGTGCCATGTCATCAAAC+CGG | + | chr2_4:25434651-25434670 | None:intergenic | 50.0% |
| ATGGCACCGTGTCAATTGCA+TGG | - | chr2_4:25434661-25434680 | Msa0322530:intron | 50.0% | |
| TGGCACCGTGTCAATTGCAT+GGG | - | chr2_4:25434662-25434681 | Msa0322530:intron | 50.0% | |
| GATCGCCCATGCAATTGACA+CGG | + | chr2_4:25434670-25434689 | None:intergenic | 50.0% | |
| TGTCATACCCGTAAGTGTGG+AGG | - | chr2_4:25435128-25435147 | Msa0322530:intron | 50.0% | |
| GCGGGATGTAGGTCGTTGAT+TGG | - | chr2_4:25432983-25433002 | Msa0322530:intron | 55.0% | |
| TATCCAGGACCCTAGGTCAG+GGG | + | chr2_4:25433589-25433608 | None:intergenic | 55.0% | |
| CATATCCAGGACCCTAGGTC+AGG | + | chr2_4:25433591-25433610 | None:intergenic | 55.0% | |
| AGTGGCATATCCAGGACCCT+AGG | + | chr2_4:25433596-25433615 | None:intergenic | 55.0% | |
| !! | CCATTGACTCAGTGACCCAG+TGG | + | chr2_4:25433989-25434008 | None:intergenic | 55.0% |
| CCACTGGGTCACTGAGTCAA+TGG | - | chr2_4:25433986-25434005 | Msa0322530:intron | 55.0% | |
| TGGTCGAACCACTCGATCAC+TGG | - | chr2_4:25434006-25434025 | Msa0322530:intron | 55.0% | |
| CGGTTCAACCAGTGATCGAG+TGG | + | chr2_4:25434017-25434036 | None:intergenic | 55.0% | |
| CGCTCGTTTGACCTTTGACC+TGG | - | chr2_4:25434604-25434623 | Msa0322530:intron | 55.0% | |
| TCGAACCGGTACGGAAAACC+AGG | + | chr2_4:25434625-25434644 | None:intergenic | 55.0% | |
| !! | TTCCGTACCGGTTCGACAAC+CGG | - | chr2_4:25434629-25434648 | Msa0322530:intron | 55.0% |
| AACCGGTTGTCGAACCGGTA+CGG | + | chr2_4:25434634-25434653 | None:intergenic | 55.0% | |
| GCTCGAACCAGTCATGTGTC+CGG | - | chr2_4:25434699-25434718 | Msa0322530:intron | 55.0% | |
| CCAGTCATGTGTCCGGTTCA+CGG | - | chr2_4:25434706-25434725 | Msa0322530:intron | 55.0% | |
| TCATGTGTCCGGTTCACGGT+CGG | - | chr2_4:25434710-25434729 | Msa0322530:intron | 55.0% | |
| ! | ACTCGGACCGGTCATCGACT+CGG | - | chr2_4:25433958-25433977 | Msa0322530:intron | 60.0% |
| !! | ATCGACTCGGCAAGGCCACT+GGG | - | chr2_4:25433971-25433990 | Msa0322530:intron | 60.0% |
| CCGTGAACCGGACACATGAC+TGG | + | chr2_4:25434709-25434728 | None:intergenic | 60.0% | |
| !! | GACCGGTCATCGACTCGGCA+AGG | - | chr2_4:25433963-25433982 | Msa0322530:intron | 65.0% |
| GGCCTTGCCGAGTCGATGAC+CGG | + | chr2_4:25433968-25433987 | None:intergenic | 65.0% | |
| !! | CATCGACTCGGCAAGGCCAC+TGG | - | chr2_4:25433970-25433989 | Msa0322530:intron | 65.0% |
| TGTCCGGTTCACGGTCGGAC+CGG | - | chr2_4:25434715-25434734 | Msa0322530:intron | 65.0% | |
| CAACCGGTCCGACCGTGAAC+CGG | + | chr2_4:25434721-25434740 | None:intergenic | 65.0% | |
| CACGGTCGGACCGGTTGAAC+CGG | - | chr2_4:25434724-25434743 | Msa0322530:intron | 65.0% | |
| !! | AAAAACCGGCTCGGACCGGC+CGG | + | chr2_4:25434746-25434765 | None:intergenic | 65.0% |
| GCACCCCTGACCTAGGGTCC+TGG | - | chr2_4:25433583-25433602 | Msa0322530:intron | 70.0% | |
| GTCGGACCGGTTGAACCGGC+CGG | - | chr2_4:25434728-25434747 | Msa0322530:intron | 70.0% | |
| ! | CTCGGACCGGCCGGTTCAAC+CGG | + | chr2_4:25434737-25434756 | None:intergenic | 70.0% |
| TTGAACCGGCCGGTCCGAGC+CGG | - | chr2_4:25434738-25434757 | Msa0322530:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 25432339 | 25435158 | 25432339 | ID=Msa0322530;Name=Msa0322530 |
| chr2_4 | mRNA | 25432339 | 25435158 | 25432339 | ID=Msa0322530-mRNA-1;Parent=Msa0322530;Name=Msa0322530-mRNA-1;_AED=0.41;_eAED=0.44;_QI=0|0|0|0.5|0|0|2|0|103 |
| chr2_4 | exon | 25435151 | 25435158 | 25435151 | ID=Msa0322530-mRNA-1:exon:8990;Parent=Msa0322530-mRNA-1 |
| chr2_4 | exon | 25432339 | 25432642 | 25432339 | ID=Msa0322530-mRNA-1:exon:8989;Parent=Msa0322530-mRNA-1 |
| chr2_4 | CDS | 25435151 | 25435158 | 25435151 | ID=Msa0322530-mRNA-1:cds;Parent=Msa0322530-mRNA-1 |
| chr2_4 | CDS | 25432339 | 25432642 | 25432339 | ID=Msa0322530-mRNA-1:cds;Parent=Msa0322530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
