Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195110 | XP_013463484.2 | 66.667 | 75 | 23 | 1 | 51 | 123 | 174 | 248 | 4.48e-26 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195110 | sp|P36908|CHIA_CICAR | 44.086 | 93 | 50 | 1 | 53 | 145 | 172 | 262 | 7.44e-19 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195110 | A0A2Z6NNY9 | 66.667 | 75 | 23 | 1 | 51 | 123 | 146 | 220 | 9.79e-26 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0195080 | Msa0195110 | 0.858824 | 6.318773e-63 | -8.615850e-47 |
| Msa0195100 | Msa0195110 | 0.870535 | 1.356471e-66 | -8.615850e-47 |
| Msa0195110 | Msa0202800 | 0.868918 | 4.568264e-66 | -8.615850e-47 |
| Msa0195110 | Msa0230320 | 0.870010 | 2.014831e-66 | -8.615850e-47 |
| Msa0195110 | Msa0245890 | 0.858732 | 6.729948e-63 | -8.615850e-47 |
| Msa0195110 | Msa0245900 | 0.860638 | 1.795965e-63 | -8.615850e-47 |
| Msa0195110 | Msa0284480 | 0.870216 | 1.724961e-66 | -8.615850e-47 |
| Msa0195110 | Msa0308630 | 0.873482 | 1.421530e-67 | -8.615850e-47 |
| Msa0195110 | Msa0322530 | 0.884013 | 2.754689e-71 | -8.615850e-47 |
| Msa0195110 | Msa0322540 | 0.866115 | 3.608464e-65 | -8.615850e-47 |
| Msa0195110 | Msa0389770 | 0.882505 | 9.845688e-71 | -8.615850e-47 |
| Msa0195110 | Msa1423780 | 0.868405 | 6.693061e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195110 | MtrunA17_Chr2g0300141 | 68.000 | 75 | 22 | 1 | 51 | 123 | 173 | 247 | 3.88e-29 | 108 |
| Msa0195110 | MtrunA17_Chr2g0300101 | 65.333 | 75 | 24 | 1 | 51 | 123 | 173 | 247 | 5.95e-28 | 105 |
| Msa0195110 | MtrunA17_Chr2g0300081 | 66.667 | 75 | 23 | 1 | 51 | 123 | 175 | 249 | 6.37e-28 | 105 |
| Msa0195110 | MtrunA17_Chr2g0300051 | 66.667 | 75 | 23 | 1 | 51 | 123 | 170 | 244 | 3.00e-27 | 103 |
| Msa0195110 | MtrunA17_Chr2g0300171 | 68.750 | 64 | 18 | 1 | 62 | 123 | 1 | 64 | 2.70e-25 | 94.4 |
| Msa0195110 | MtrunA17_Chr2g0300181 | 45.283 | 106 | 48 | 3 | 20 | 123 | 152 | 249 | 8.85e-21 | 86.3 |
| Msa0195110 | MtrunA17_Chr1g0202231 | 50.704 | 71 | 33 | 1 | 53 | 123 | 177 | 245 | 1.31e-18 | 80.5 |
| Msa0195110 | MtrunA17_Chr1g0202241 | 49.296 | 71 | 34 | 1 | 53 | 123 | 175 | 243 | 1.71e-18 | 79.7 |
| Msa0195110 | MtrunA17_Chr1g0202261 | 42.553 | 94 | 49 | 3 | 53 | 145 | 177 | 266 | 1.82e-17 | 77.0 |
| Msa0195110 | MtrunA17_Chr7g0274861 | 41.489 | 94 | 51 | 3 | 53 | 145 | 154 | 244 | 1.05e-15 | 72.0 |
| Msa0195110 | MtrunA17_Chr8g0361941 | 42.105 | 95 | 49 | 4 | 53 | 145 | 177 | 267 | 1.46e-15 | 71.6 |
| Msa0195110 | MtrunA17_Chr2g0331781 | 40.426 | 94 | 52 | 3 | 53 | 145 | 192 | 282 | 3.91e-15 | 70.9 |
| Msa0195110 | MtrunA17_Chr7g0240891 | 39.362 | 94 | 53 | 3 | 53 | 145 | 177 | 267 | 1.39e-14 | 68.9 |
| Msa0195110 | MtrunA17_Chr5g0418461 | 33.094 | 139 | 79 | 5 | 12 | 145 | 134 | 263 | 1.64e-13 | 66.2 |
| Msa0195110 | MtrunA17_Chr1g0202281 | 35.106 | 94 | 57 | 3 | 53 | 145 | 189 | 279 | 8.93e-13 | 64.3 |
| Msa0195110 | MtrunA17_Chr7g0275231 | 49.153 | 59 | 26 | 2 | 53 | 110 | 180 | 235 | 7.83e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0195110 | AT5G24090.1 | 43.056 | 72 | 38 | 2 | 53 | 123 | 181 | 250 | 1.91e-13 | 66.2 |
Find 24 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGACACAGCTATCAAAAT+TGG | 0.209040 | 2_1:+11806220 | Msa0195110:CDS |
| ACTATATATATGTATGAGTA+TGG | 0.348380 | 2_1:+11803633 | None:intergenic |
| ATAATCTGGCATAATACATT+TGG | 0.349220 | 2_1:-11806194 | None:intergenic |
| CATAAATCCTCCACACTTAC+GGG | 0.365978 | 2_1:-11806451 | None:intergenic |
| CTACATTGCTCTTTCAATCA+TGG | 0.388911 | 2_1:+11806314 | Msa0195110:CDS |
| TCATAAATCCTCCACACTTA+CGG | 0.424053 | 2_1:-11806452 | None:intergenic |
| TAATCTGGCATAATACATTT+GGG | 0.435074 | 2_1:-11806193 | None:intergenic |
| TTAGAAATGAGATCATTTGA+TGG | 0.435572 | 2_1:-11806396 | None:intergenic |
| TTTCTTAACCATGGTAAAGT+TGG | 0.445205 | 2_1:-11803684 | None:intergenic |
| CATGGTAAAGTTGGTCGTAC+AGG | 0.452145 | 2_1:-11803675 | None:intergenic |
| TCTTTCAATCATGGGATGCT+TGG | 0.452854 | 2_1:+11806323 | Msa0195110:CDS |
| GCTTGATCATATTGACATGA+AGG | 0.458306 | 2_1:-11806280 | None:intergenic |
| TACATTGCTCTTTCAATCAT+GGG | 0.479487 | 2_1:+11806315 | Msa0195110:CDS |
| ATTTGATGGTATAAAGATGT+TGG | 0.481871 | 2_1:-11806382 | None:intergenic |
| GCTGTGTCAAGGTAATAATC+TGG | 0.485515 | 2_1:-11806208 | None:intergenic |
| TCCCAAGGGTTACATGAAAA+CGG | 0.514912 | 2_1:-11803781 | None:intergenic |
| CTTGATCATATTGACATGAA+GGG | 0.522737 | 2_1:-11806279 | None:intergenic |
| TAGGTACATAATATACATAA+AGG | 0.535567 | 2_1:-11803740 | None:intergenic |
| GAGGGAATCAAAGCGTAACT+AGG | 0.555532 | 2_1:-11803759 | None:intergenic |
| ACTTGTCATACCCGTAAGTG+TGG | 0.621407 | 2_1:+11806441 | Msa0195110:CDS |
| CTGTACGACCAACTTTACCA+TGG | 0.625522 | 2_1:+11803676 | Msa0195110:CDS |
| AAGGGTTACATGAAAACGGA+GGG | 0.632274 | 2_1:-11803777 | None:intergenic |
| TGTCATACCCGTAAGTGTGG+AGG | 0.657655 | 2_1:+11806444 | Msa0195110:CDS |
| CAAGGGTTACATGAAAACGG+AGG | 0.693210 | 2_1:-11803778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATTATAAAAAAATA+TGG | + | chr2_1:11805484-11805503 | Msa0195110:intron | 0.0% |
| !! | TAATAATAATTAAACATTGA+AGG | - | chr2_1:11805694-11805713 | None:intergenic | 10.0% |
| !! | AAAATCTTAAATCTTAAATA+TGG | - | chr2_1:11805826-11805845 | None:intergenic | 10.0% |
| !! | AAAATCTTAAATCTTAAATA+TGG | - | chr2_1:11805826-11805845 | None:intergenic | 10.0% |
| !!! | ACATAAAATCTTTTGAATTT+TGG | - | chr2_1:11804220-11804239 | None:intergenic | 15.0% |
| !! | TTTATATTAAGAAGAAAAAG+AGG | + | chr2_1:11804625-11804644 | Msa0195110:intron | 15.0% |
| !! | ATAAAATCATGTTACATTAT+CGG | + | chr2_1:11804787-11804806 | Msa0195110:intron | 15.0% |
| !! | AAAAAAAAAACAGTGTTAAA+CGG | - | chr2_1:11804972-11804991 | None:intergenic | 15.0% |
| !! | TAGGTACATAATATACATAA+AGG | - | chr2_1:11803743-11803762 | None:intergenic | 20.0% |
| !!! | TAAAATCTTTTGAATTTTGG+TGG | - | chr2_1:11804217-11804236 | None:intergenic | 20.0% |
| !!! | AAACAGATTGAGTTTTATTT+TGG | + | chr2_1:11804467-11804486 | Msa0195110:intron | 20.0% |
| !! | ATTGAATGCACAAAATTATA+TGG | + | chr2_1:11805069-11805088 | Msa0195110:intron | 20.0% |
| !! | TAAAGTGATTAAAGCTTAAT+TGG | + | chr2_1:11805149-11805168 | Msa0195110:intron | 20.0% |
| !! | TGGATATAAATTGTTTAATC+CGG | - | chr2_1:11805432-11805451 | None:intergenic | 20.0% |
| !! | TCAGTTCATCAATATTATAT+TGG | + | chr2_1:11805613-11805632 | Msa0195110:intron | 20.0% |
| !! | GTGTTTATGAGTAAAAAAAA+TGG | - | chr2_1:11806135-11806154 | None:intergenic | 20.0% |
| !!! | TCATTTTTCTTTCTTAACCA+TGG | - | chr2_1:11803696-11803715 | None:intergenic | 25.0% |
| ! | GTTAAGAAAGAAAAATGATC+AGG | + | chr2_1:11803698-11803717 | Msa0195110:CDS | 25.0% |
| !!! | TTTGATTTTTAGTGCAACAA+AGG | + | chr2_1:11804063-11804082 | Msa0195110:intron | 25.0% |
| ! | ATGTAGAAAATAGGGATAAT+TGG | + | chr2_1:11804397-11804416 | Msa0195110:intron | 25.0% |
| ! | ACAATATACAAGAACAAGAA+TGG | + | chr2_1:11804945-11804964 | Msa0195110:intron | 25.0% |
| ! | AGTTTACATAGATGTTAAAC+CGG | + | chr2_1:11805410-11805429 | Msa0195110:intron | 25.0% |
| ! | ATAAAACAAATAGCTATCAG+TGG | + | chr2_1:11805730-11805749 | Msa0195110:intron | 25.0% |
| ! | TAAATCTTAAATATGGCTCA+TGG | - | chr2_1:11805819-11805838 | None:intergenic | 25.0% |
| ! | TAAATCTTAAATATGGCTCA+TGG | - | chr2_1:11805819-11805838 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACTATGCTTCCT+AGG | + | chr2_1:11806077-11806096 | Msa0195110:intron | 25.0% |
| !!! | TTTTAAAACTATGCTTCCTA+GGG | + | chr2_1:11806078-11806097 | Msa0195110:intron | 25.0% |
| ! | ATGGGTGAAAATATAACTTT+CGG | + | chr2_1:11806108-11806127 | Msa0195110:intron | 25.0% |
| ! | TAATCTGGCATAATACATTT+GGG | - | chr2_1:11806196-11806215 | None:intergenic | 25.0% |
| ! | ATAATCTGGCATAATACATT+TGG | - | chr2_1:11806197-11806216 | None:intergenic | 25.0% |
| !! | TAGCTACATATTATGTTTTC+TGG | + | chr2_1:11806353-11806372 | Msa0195110:CDS | 25.0% |
| !! | AGCTACATATTATGTTTTCT+GGG | + | chr2_1:11806354-11806373 | Msa0195110:CDS | 25.0% |
| !! | ATTTGATGGTATAAAGATGT+TGG | - | chr2_1:11806385-11806404 | None:intergenic | 25.0% |
| ! | TTAGAAATGAGATCATTTGA+TGG | - | chr2_1:11806399-11806418 | None:intergenic | 25.0% |
| TTTCTTAACCATGGTAAAGT+TGG | - | chr2_1:11803687-11803706 | None:intergenic | 30.0% | |
| ! | TGCATGTAGAAAAGGTTTTA+TGG | + | chr2_1:11804249-11804268 | Msa0195110:intron | 30.0% |
| !! | ATGTAGAAAAGGTTTTATGG+CGG | + | chr2_1:11804252-11804271 | Msa0195110:intron | 30.0% |
| !! | TGCTTTCTGAAAGGATATTT+TGG | + | chr2_1:11804304-11804323 | Msa0195110:intron | 30.0% |
| !! | TTTCTGAAAGGATATTTTGG+AGG | + | chr2_1:11804307-11804326 | Msa0195110:intron | 30.0% |
| !! | TTCTGAAAGGATATTTTGGA+GGG | + | chr2_1:11804308-11804327 | Msa0195110:intron | 30.0% |
| CATTGTGGATGTAGAAAATA+GGG | + | chr2_1:11804389-11804408 | Msa0195110:intron | 30.0% | |
| AAAATAGGGATAATTGGAAG+TGG | + | chr2_1:11804403-11804422 | Msa0195110:intron | 30.0% | |
| !!! | CCTAGCATAGTTTTAAAACT+CGG | + | chr2_1:11805257-11805276 | Msa0195110:intron | 30.0% |
| !!! | ACGCGCGTTTTTTTTTTTTT+TGG | - | chr2_1:11805907-11805926 | None:intergenic | 30.0% |
| !!! | GGAAGCATAGTTTTAAAAAC+CGG | - | chr2_1:11806076-11806095 | None:intergenic | 30.0% |
| ! | AAACACTGACTAACAATTAC+AGG | + | chr2_1:11806149-11806168 | Msa0195110:intron | 30.0% |
| CTTGATCATATTGACATGAA+GGG | - | chr2_1:11806282-11806301 | None:intergenic | 30.0% | |
| TACATTGCTCTTTCAATCAT+GGG | + | chr2_1:11806315-11806334 | Msa0195110:CDS | 30.0% | |
| ! | GCTACATATTATGTTTTCTG+GGG | + | chr2_1:11806355-11806374 | Msa0195110:CDS | 30.0% |
| GTCTTCTCTTATGTATGTAC+TGG | + | chr2_1:11803812-11803831 | Msa0195110:intron | 35.0% | |
| GATCTGATGAAACATCACTA+CGG | + | chr2_1:11804022-11804041 | Msa0195110:intron | 35.0% | |
| ATCTGATGAAACATCACTAC+GGG | + | chr2_1:11804023-11804042 | Msa0195110:intron | 35.0% | |
| TTAGTGCAACAAAGGAAACA+TGG | + | chr2_1:11804071-11804090 | Msa0195110:intron | 35.0% | |
| TGAGCTAATTAGAAGTAACC+AGG | + | chr2_1:11804150-11804169 | Msa0195110:intron | 35.0% | |
| ATCATCTTCACAAAAGAACC+TGG | - | chr2_1:11804171-11804190 | None:intergenic | 35.0% | |
| ! | AAACCTTTTCTACATGCATC+AGG | - | chr2_1:11804247-11804266 | None:intergenic | 35.0% |
| !! | TGTAGAAAAGGTTTTATGGC+GGG | + | chr2_1:11804253-11804272 | Msa0195110:intron | 35.0% |
| TTAGATGGATGCTTTCTGAA+AGG | + | chr2_1:11804295-11804314 | Msa0195110:intron | 35.0% | |
| ! | CCTATTTTCTACATCCACAA+TGG | - | chr2_1:11804391-11804410 | None:intergenic | 35.0% |
| CCATTGTGGATGTAGAAAAT+AGG | + | chr2_1:11804388-11804407 | Msa0195110:intron | 35.0% | |
| ! | GTTTTTGACACTATTGCATC+AGG | + | chr2_1:11804425-11804444 | Msa0195110:intron | 35.0% |
| !!! | CCGAGTTTTAAAACTATGCT+AGG | - | chr2_1:11805260-11805279 | None:intergenic | 35.0% |
| !!! | CATAGTTTTAAAACTCGGAC+CGG | + | chr2_1:11805262-11805281 | Msa0195110:intron | 35.0% |
| TTTAATCCGATTCAGTCATG+CGG | - | chr2_1:11805353-11805372 | None:intergenic | 35.0% | |
| ATGACTGAATCGGATTAAAC+CGG | + | chr2_1:11805354-11805373 | Msa0195110:intron | 35.0% | |
| !!! | CATAGTTTTAAAAACCGGCT+CGG | - | chr2_1:11806071-11806090 | None:intergenic | 35.0% |
| !! | CAATTTTGATAGCTGTGTCA+AGG | - | chr2_1:11806222-11806241 | None:intergenic | 35.0% |
| CTTGACACAGCTATCAAAAT+TGG | + | chr2_1:11806220-11806239 | Msa0195110:CDS | 35.0% | |
| GCTTGATCATATTGACATGA+AGG | - | chr2_1:11806283-11806302 | None:intergenic | 35.0% | |
| CTACATTGCTCTTTCAATCA+TGG | + | chr2_1:11806314-11806333 | Msa0195110:CDS | 35.0% | |
| !! | TGACAAGTTTTGTCAATGTG+AGG | - | chr2_1:11806429-11806448 | None:intergenic | 35.0% |
| TCATAAATCCTCCACACTTA+CGG | - | chr2_1:11806455-11806474 | None:intergenic | 35.0% | |
| AAGGGTTACATGAAAACGGA+GGG | - | chr2_1:11803780-11803799 | None:intergenic | 40.0% | |
| ! | TCCGTTTTCATGTAACCCTT+GGG | + | chr2_1:11803780-11803799 | Msa0195110:intron | 40.0% |
| TCCCAAGGGTTACATGAAAA+CGG | - | chr2_1:11803784-11803803 | None:intergenic | 40.0% | |
| TCTGATGAAACATCACTACG+GGG | + | chr2_1:11804024-11804043 | Msa0195110:intron | 40.0% | |
| AACAAAGGAAACATGGCAGT+TGG | + | chr2_1:11804078-11804097 | Msa0195110:intron | 40.0% | |
| AGTTGGTTGAAGGTAGTGAA+AGG | + | chr2_1:11804095-11804114 | Msa0195110:intron | 40.0% | |
| GTTGGTTGAAGGTAGTGAAA+GGG | + | chr2_1:11804096-11804115 | Msa0195110:intron | 40.0% | |
| TGGCGACTATGGAATTTGTA+TGG | - | chr2_1:11804197-11804216 | None:intergenic | 40.0% | |
| !!! | TTGAATTTTGGTGGCGACTA+TGG | - | chr2_1:11804208-11804227 | None:intergenic | 40.0% |
| TGTCCTGATGCATGTAGAAA+AGG | + | chr2_1:11804241-11804260 | Msa0195110:intron | 40.0% | |
| !! | AGGTCGTTGATTGGTTTAGA+TGG | + | chr2_1:11804280-11804299 | Msa0195110:intron | 40.0% |
| AGGGAAACTATTGTCTGTTG+TGG | + | chr2_1:11804327-11804346 | Msa0195110:intron | 40.0% | |
| TGTCATTGCTTATGCCATTG+TGG | + | chr2_1:11804374-11804393 | Msa0195110:intron | 40.0% | |
| AAGGATGCTATTCAACCGTT+GGG | - | chr2_1:11805756-11805775 | None:intergenic | 40.0% | |
| ATCGAAGAACCTGTTACCTA+TGG | - | chr2_1:11805785-11805804 | None:intergenic | 40.0% | |
| GCTGTGTCAAGGTAATAATC+TGG | - | chr2_1:11806211-11806230 | None:intergenic | 40.0% | |
| TCTTTCAATCATGGGATGCT+TGG | + | chr2_1:11806323-11806342 | Msa0195110:CDS | 40.0% | |
| CATAAATCCTCCACACTTAC+GGG | - | chr2_1:11806454-11806473 | None:intergenic | 40.0% | |
| ! | CATGGTAAAGTTGGTCGTAC+AGG | - | chr2_1:11803678-11803697 | None:intergenic | 45.0% |
| CTGTACGACCAACTTTACCA+TGG | + | chr2_1:11803676-11803695 | Msa0195110:CDS | 45.0% | |
| GAGGGAATCAAAGCGTAACT+AGG | - | chr2_1:11803762-11803781 | None:intergenic | 45.0% | |
| CAAGGGTTACATGAAAACGG+AGG | - | chr2_1:11803781-11803800 | None:intergenic | 45.0% | |
| ! | CTCCGTTTTCATGTAACCCT+TGG | + | chr2_1:11803779-11803798 | Msa0195110:intron | 45.0% |
| GAAGACGCTTTGATTCCCAA+GGG | - | chr2_1:11803798-11803817 | None:intergenic | 45.0% | |
| AGAAGACGCTTTGATTCCCA+AGG | - | chr2_1:11803799-11803818 | None:intergenic | 45.0% | |
| CACTACGGGGTTATACTTGA+TGG | + | chr2_1:11804037-11804056 | Msa0195110:intron | 45.0% | |
| GAAACATGGCAGTTGGTTGA+AGG | + | chr2_1:11804085-11804104 | Msa0195110:intron | 45.0% | |
| !! | AAGGTTTTATGGCGGGATGT+AGG | + | chr2_1:11804260-11804279 | Msa0195110:intron | 45.0% |
| ACACTATTGCATCAGGAGCT+AGG | + | chr2_1:11804432-11804451 | Msa0195110:intron | 45.0% | |
| AAAATTTGCACCCCTGACCT+AGG | + | chr2_1:11804890-11804909 | Msa0195110:intron | 45.0% | |
| AAATTTGCACCCCTGACCTA+GGG | + | chr2_1:11804891-11804910 | Msa0195110:intron | 45.0% | |
| TGTCAAGATGCCTAACACAG+TGG | - | chr2_1:11804928-11804947 | None:intergenic | 45.0% | |
| GTTGAACCGCATGACTGAAT+CGG | + | chr2_1:11805344-11805363 | Msa0195110:intron | 45.0% | |
| TCGGATTAAACCGGATGACT+CGG | + | chr2_1:11805363-11805382 | Msa0195110:intron | 45.0% | |
| AGTCATACAACCGAGTCATC+CGG | - | chr2_1:11805376-11805395 | None:intergenic | 45.0% | |
| !! | GATGACTCGGTTGTATGACT+CGG | + | chr2_1:11805376-11805395 | Msa0195110:intron | 45.0% |
| AATAGCTATCAGTGGCCCAA+CGG | + | chr2_1:11805738-11805757 | Msa0195110:intron | 45.0% | |
| CAAGGATGCTATTCAACCGT+TGG | - | chr2_1:11805757-11805776 | None:intergenic | 45.0% | |
| !! | TTTGACCTGGTTTTCCGTAC+CGG | + | chr2_1:11805933-11805952 | Msa0195110:intron | 45.0% |
| !! | ATGGTGCCATGTCATCAAAC+CGG | - | chr2_1:11805967-11805986 | None:intergenic | 45.0% |
| ATGGCACCATGTCAATTGCA+TGG | + | chr2_1:11805977-11805996 | Msa0195110:intron | 45.0% | |
| TGGCACCATGTCAATTGCAT+GGG | + | chr2_1:11805978-11805997 | Msa0195110:intron | 45.0% | |
| TGCATGGGCGATCCAATAAT+TGG | + | chr2_1:11805993-11806012 | Msa0195110:intron | 45.0% | |
| !! | GACTGGTTCGAGCCAATTAT+TGG | - | chr2_1:11806008-11806027 | None:intergenic | 45.0% |
| !!! | TTTTAAAAACCGGCTCGGAC+CGG | - | chr2_1:11806066-11806085 | None:intergenic | 45.0% |
| TGCTTCCTAGGGCTATATCA+TGG | + | chr2_1:11806089-11806108 | Msa0195110:intron | 45.0% | |
| GCTTCCTAGGGCTATATCAT+GGG | + | chr2_1:11806090-11806109 | Msa0195110:intron | 45.0% | |
| TTCACCCATGATATAGCCCT+AGG | - | chr2_1:11806097-11806116 | None:intergenic | 45.0% | |
| ACTTGTCATACCCGTAAGTG+TGG | + | chr2_1:11806441-11806460 | Msa0195110:CDS | 45.0% | |
| !!! | AAAACATTTAATATTTTTAT+TGG | + | chr2_1:11804565-11804584 | Msa0195110:intron | 5.0% |
| !!! | AAACATTTAATATTTTTATT+GGG | + | chr2_1:11804566-11804585 | Msa0195110:intron | 5.0% |
| !! | ATTTATTATATTTATAGTTA+TGG | - | chr2_1:11805452-11805471 | None:intergenic | 5.0% |
| !!! | AATGTTTTATTTTTAATATT+AGG | - | chr2_1:11805594-11805613 | None:intergenic | 5.0% |
| ATATCCAGGACCCTAGGTCA+GGG | - | chr2_1:11804904-11804923 | None:intergenic | 50.0% | |
| CCTAACACAGTGGCATATCC+AGG | - | chr2_1:11804918-11804937 | None:intergenic | 50.0% | |
| CCTGGATATGCCACTGTGTT+AGG | + | chr2_1:11804915-11804934 | Msa0195110:intron | 50.0% | |
| TGGTCGAACCACTAGATCAC+TGG | + | chr2_1:11805322-11805341 | Msa0195110:intron | 50.0% | |
| CGGTTCAACCAGTGATCTAG+TGG | - | chr2_1:11805333-11805352 | None:intergenic | 50.0% | |
| TAGCATCCTTGTGCTGCCAT+AGG | + | chr2_1:11805766-11805785 | Msa0195110:intron | 50.0% | |
| CTGTTACCTATGGCAGCACA+AGG | - | chr2_1:11805775-11805794 | None:intergenic | 50.0% | |
| CTTGTGCTGCCATAGGTAAC+AGG | + | chr2_1:11805773-11805792 | Msa0195110:intron | 50.0% | |
| ATATGGCTCATGGCTCACAC+AGG | - | chr2_1:11805809-11805828 | None:intergenic | 50.0% | |
| GGTACGGAAAACCAGGTCAA+AGG | - | chr2_1:11805934-11805953 | None:intergenic | 50.0% | |
| CATCAAACCGGTTGTCGAAC+CGG | - | chr2_1:11805955-11805974 | None:intergenic | 50.0% | |
| !! | CGACAACCGGTTTGATGACA+TGG | + | chr2_1:11805958-11805977 | Msa0195110:intron | 50.0% |
| GATCGCCCATGCAATTGACA+TGG | - | chr2_1:11805986-11806005 | None:intergenic | 50.0% | |
| TGTCATACCCGTAAGTGTGG+AGG | + | chr2_1:11806444-11806463 | Msa0195110:CDS | 50.0% | |
| GCGGGATGTAGGTCGTTGAT+TGG | + | chr2_1:11804271-11804290 | Msa0195110:intron | 55.0% | |
| TATCCAGGACCCTAGGTCAG+GGG | - | chr2_1:11804903-11804922 | None:intergenic | 55.0% | |
| CATATCCAGGACCCTAGGTC+AGG | - | chr2_1:11804905-11804924 | None:intergenic | 55.0% | |
| AGTGGCATATCCAGGACCCT+AGG | - | chr2_1:11804910-11804929 | None:intergenic | 55.0% | |
| !! | CCATTGACTCAGTGACCCAG+TGG | - | chr2_1:11805305-11805324 | None:intergenic | 55.0% |
| CCACTGGGTCACTGAGTCAA+TGG | + | chr2_1:11805302-11805321 | Msa0195110:intron | 55.0% | |
| TCGAACCGGTACGGAAAACC+AGG | - | chr2_1:11805941-11805960 | None:intergenic | 55.0% | |
| !! | TTCCGTACCGGTTCGACAAC+CGG | + | chr2_1:11805945-11805964 | Msa0195110:intron | 55.0% |
| AACCGGTTGTCGAACCGGTA+CGG | - | chr2_1:11805950-11805969 | None:intergenic | 55.0% | |
| GCTCGAACCAGTCATGTGTC+CGG | + | chr2_1:11806015-11806034 | Msa0195110:intron | 55.0% | |
| CCAGTCATGTGTCCGGTTCA+CGG | + | chr2_1:11806022-11806041 | Msa0195110:intron | 55.0% | |
| TCATGTGTCCGGTTCACGGT+CGG | + | chr2_1:11806026-11806045 | Msa0195110:intron | 55.0% | |
| ! | ACTCGGACCGGTCATCGACT+CGG | + | chr2_1:11805274-11805293 | Msa0195110:intron | 60.0% |
| !! | ATCGACTCGGCAAGGCCACT+GGG | + | chr2_1:11805287-11805306 | Msa0195110:intron | 60.0% |
| CGCGCGTTTGACCTTTGACC+TGG | + | chr2_1:11805920-11805939 | Msa0195110:intron | 60.0% | |
| CCGTGAACCGGACACATGAC+TGG | - | chr2_1:11806025-11806044 | None:intergenic | 60.0% | |
| !! | GACCGGTCATCGACTCGGCA+AGG | + | chr2_1:11805279-11805298 | Msa0195110:intron | 65.0% |
| GGCCTTGCCGAGTCGATGAC+CGG | - | chr2_1:11805284-11805303 | None:intergenic | 65.0% | |
| !! | CATCGACTCGGCAAGGCCAC+TGG | + | chr2_1:11805286-11805305 | Msa0195110:intron | 65.0% |
| TGTCCGGTTCACGGTCGGAC+CGG | + | chr2_1:11806031-11806050 | Msa0195110:intron | 65.0% | |
| CAACCGGTCCGACCGTGAAC+CGG | - | chr2_1:11806037-11806056 | None:intergenic | 65.0% | |
| CACGGTCGGACCGGTTGAAC+CGG | + | chr2_1:11806040-11806059 | Msa0195110:intron | 65.0% | |
| !! | AAAAACCGGCTCGGACCGGC+CGG | - | chr2_1:11806062-11806081 | None:intergenic | 65.0% |
| GCACCCCTGACCTAGGGTCC+TGG | + | chr2_1:11804897-11804916 | Msa0195110:intron | 70.0% | |
| GTCGGACCGGTTGAACCGGC+CGG | + | chr2_1:11806044-11806063 | Msa0195110:intron | 70.0% | |
| ! | CTCGGACCGGCCGGTTCAAC+CGG | - | chr2_1:11806053-11806072 | None:intergenic | 70.0% |
| TTGAACCGGCCGGTCCGAGC+CGG | + | chr2_1:11806054-11806073 | Msa0195110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 11803642 | 11806474 | 11803642 | ID=Msa0195110;Name=Msa0195110 |
| chr2_1 | mRNA | 11803642 | 11806474 | 11803642 | ID=Msa0195110-mRNA-1;Parent=Msa0195110;Name=Msa0195110-mRNA-1;_AED=0.56;_eAED=0.59;_QI=0|0|0|0.5|0|0|2|0|150 |
| chr2_1 | exon | 11803642 | 11803790 | 11803642 | ID=Msa0195110-mRNA-1:exon:5194;Parent=Msa0195110-mRNA-1 |
| chr2_1 | exon | 11806171 | 11806474 | 11806171 | ID=Msa0195110-mRNA-1:exon:5195;Parent=Msa0195110-mRNA-1 |
| chr2_1 | CDS | 11803642 | 11803790 | 11803642 | ID=Msa0195110-mRNA-1:cds;Parent=Msa0195110-mRNA-1 |
| chr2_1 | CDS | 11806171 | 11806474 | 11806171 | ID=Msa0195110-mRNA-1:cds;Parent=Msa0195110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
