Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249090 | XP_013463861.1 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249090 | sp|Q8GWH3|OS9_ARATH | 57.877 | 292 | 104 | 5 | 3 | 291 | 7 | 282 | 1.23e-114 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249090 | A0A072V8G7 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100160 | Msa0249090 | 0.801793 | 7.614402e-49 | -8.615850e-47 |
| Msa0249090 | Msa0574390 | 0.805954 | 1.040054e-49 | -8.615850e-47 |
| Msa0249090 | Msa0926470 | 0.809739 | 1.630520e-50 | -8.615850e-47 |
| Msa0249090 | Msa1080960 | 0.820575 | 6.379129e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249090 | MtrunA17_Chr2g0304531 | 97.315 | 298 | 8 | 0 | 1 | 298 | 1 | 298 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249090 | AT5G35080.1 | 57.877 | 292 | 104 | 5 | 3 | 291 | 7 | 282 | 1.25e-115 | 335 |
Find 92 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGACATTTCTACATTTA+AGG | 0.045076 | 2_2:+34949993 | Msa0249090:CDS |
| TGATAATTGTTATTATTATT+TGG | 0.142627 | 2_2:+34950867 | Msa0249090:three_prime_UTR |
| TAGAAATGTCAGAAAGATTT+TGG | 0.176959 | 2_2:-34949984 | None:intergenic |
| AAGACCTGTAATTCATAAAA+TGG | 0.250976 | 2_2:-34951066 | None:intergenic |
| ATTTGATTAGGTAGTATATT+TGG | 0.272726 | 2_2:+34946304 | Msa0249090:intron |
| TACACAATGTCAACGTAAAA+AGG | 0.281123 | 2_2:+34950663 | Msa0249090:three_prime_UTR |
| ATACGGTTCCATTGGTATAT+TGG | 0.282331 | 2_2:-34950157 | None:intergenic |
| TACAAGCCTTCCTTCCTAAC+AGG | 0.289178 | 2_2:+34950745 | Msa0249090:three_prime_UTR |
| GAAATTTCGACAACTGCATT+TGG | 0.318537 | 2_2:+34947947 | Msa0249090:CDS |
| ATGCATGTTTAGCACTTTAG+AGG | 0.346842 | 2_2:+34950928 | Msa0249090:three_prime_UTR |
| TTTCATCTAATGGAGGTTCT+TGG | 0.347087 | 2_2:+34950817 | Msa0249090:three_prime_UTR |
| TGAAATTCAATCTTGTATTT+CGG | 0.348436 | 2_2:-34946370 | None:intergenic |
| AAAGAATTACCGATATGAAC+AGG | 0.357031 | 2_2:-34946188 | None:intergenic |
| TTACCATCCTTGTAATCCTT+TGG | 0.362188 | 2_2:-34950559 | None:intergenic |
| CCGGTACAACTAAGGATTCC+TGG | 0.381467 | 2_2:-34947576 | None:intergenic |
| GGTAGTCCAGGAATTTATCT+TGG | 0.386945 | 2_2:+34949927 | Msa0249090:intron |
| GATGGAACTGATCATTGCTC+TGG | 0.387288 | 2_2:-34950307 | None:intergenic |
| AATATTTCTAATAGTTCATC+TGG | 0.388576 | 2_2:-34947727 | None:intergenic |
| GTGAAGTGTATTTCATCTAA+TGG | 0.395801 | 2_2:+34950807 | Msa0249090:three_prime_UTR |
| AATTTCTGTCCATTCTTATC+CGG | 0.403358 | 2_2:-34947595 | None:intergenic |
| GAAACAAGAAGACAGAGATA+TGG | 0.409813 | 2_2:+34950585 | Msa0249090:CDS |
| GATAGCTTACAGGGTGAAAA+GGG | 0.413591 | 2_2:-34946405 | None:intergenic |
| AGATAGCTTACAGGGTGAAA+AGG | 0.414618 | 2_2:-34946406 | None:intergenic |
| TTTCATACCTCAGTCTCTCT+TGG | 0.415085 | 2_2:-34950197 | None:intergenic |
| CAAATCTTCCCTGTTCATAT+CGG | 0.432213 | 2_2:+34946179 | Msa0249090:CDS |
| GGTAGTATATTTGGTGGTAG+TGG | 0.438045 | 2_2:+34946313 | Msa0249090:intron |
| CAGTCGATGGTGTGCCATAC+TGG | 0.439275 | 2_2:-34950526 | None:intergenic |
| CAGAGATATGGAGATTGTTA+TGG | 0.444896 | 2_2:+34950597 | Msa0249090:CDS |
| TTCTCTGTTACAGGTAGTCC+AGG | 0.450559 | 2_2:+34949915 | Msa0249090:intron |
| AGCACTGTCTATCCCCTGTT+AGG | 0.453567 | 2_2:-34950759 | None:intergenic |
| ATTCTTATCCGGTACAACTA+AGG | 0.453860 | 2_2:-34947584 | None:intergenic |
| TTACTTGCCTAAGGTGGAAA+AGG | 0.458543 | 2_2:+34947624 | Msa0249090:CDS |
| TTTGTGAAGCATCCTTTGAC+CGG | 0.465112 | 2_2:-34950020 | None:intergenic |
| GATTGTTGAAACTGAGAAAA+GGG | 0.470057 | 2_2:+34947690 | Msa0249090:CDS |
| TGATTGTTGAAACTGAGAAA+AGG | 0.473669 | 2_2:+34947689 | Msa0249090:CDS |
| ACACACCCAAGATAAATTCC+TGG | 0.481266 | 2_2:-34949933 | None:intergenic |
| CGCGTTTGTGTTAAGTTGTG+AGG | 0.489283 | 2_2:+34946079 | Msa0249090:five_prime_UTR |
| ATATTTGGTGGTAGTGGTGG+TGG | 0.489525 | 2_2:+34946319 | Msa0249090:CDS |
| ATGGAATTATTAACGAAAAG+AGG | 0.491298 | 2_2:-34951047 | None:intergenic |
| TTAACTGCAGCTGTTGCCTC+CGG | 0.493641 | 2_2:-34949961 | None:intergenic |
| CTAACATTGTGCTGCATAGG+AGG | 0.495300 | 2_2:-34947661 | None:intergenic |
| ATTTATATGTTACTTGCCTA+AGG | 0.501089 | 2_2:+34947615 | Msa0249090:CDS |
| CTTATTCGTAAGATCACATA+CGG | 0.502007 | 2_2:-34950174 | None:intergenic |
| CTGTCTATCCCCTGTTAGGA+AGG | 0.505654 | 2_2:-34950755 | None:intergenic |
| GGGTGAAAAGGGGAATCCTC+TGG | 0.516126 | 2_2:-34946394 | None:intergenic |
| CTATCCCCTGTTAGGAAGGA+AGG | 0.516171 | 2_2:-34950751 | None:intergenic |
| AGTATATTTGGTGGTAGTGG+TGG | 0.518758 | 2_2:+34946316 | Msa0249090:CDS |
| GTAGTCCAGGAATTTATCTT+GGG | 0.521559 | 2_2:+34949928 | Msa0249090:CDS |
| TGAACTATTAGAAATATTGA+AGG | 0.525549 | 2_2:+34947732 | Msa0249090:CDS |
| CCAGGAATCCTTAGTTGTAC+CGG | 0.525699 | 2_2:+34947576 | Msa0249090:CDS |
| CACTTCACAGGAAAATATCA+TGG | 0.527490 | 2_2:-34950792 | None:intergenic |
| CTGCTAACATTGTGCTGCAT+AGG | 0.528197 | 2_2:-34947664 | None:intergenic |
| TATCTTGGGTGTGTACGATC+CGG | 0.533546 | 2_2:+34949942 | Msa0249090:CDS |
| TTTGGTGGTAGTGGTGGTGG+TGG | 0.533771 | 2_2:+34946322 | Msa0249090:CDS |
| TGTGAAGCATCCTTTGACCG+GGG | 0.536673 | 2_2:-34950018 | None:intergenic |
| CTTCCAAAGGATTACAAGGA+TGG | 0.540929 | 2_2:+34950556 | Msa0249090:CDS |
| AAGATCACATACGGTTCCAT+TGG | 0.541723 | 2_2:-34950165 | None:intergenic |
| TTAGTTGTACCGGATAAGAA+TGG | 0.545277 | 2_2:+34947586 | Msa0249090:CDS |
| ATGGAACTGATCATTGCTCT+GGG | 0.546100 | 2_2:-34950306 | None:intergenic |
| TTCATGAGGAGAGACCAGTA+TGG | 0.546248 | 2_2:+34950512 | Msa0249090:CDS |
| ATTTCGACAACTGCATTTGG+AGG | 0.546289 | 2_2:+34947950 | Msa0249090:CDS |
| TTTCTACATTTAAGGATCCC+CGG | 0.549177 | 2_2:+34950001 | Msa0249090:CDS |
| TTAGATGAAATACACTTCAC+AGG | 0.553016 | 2_2:-34950804 | None:intergenic |
| TTGTGAAGCATCCTTTGACC+GGG | 0.555246 | 2_2:-34950019 | None:intergenic |
| ACAAGTTGAAATCTCTGTGA+TGG | 0.560763 | 2_2:-34950325 | None:intergenic |
| TATATGTTACTTGCCTAAGG+TGG | 0.561139 | 2_2:+34947618 | Msa0249090:CDS |
| ATTTAAGGATCCCCGGTCAA+AGG | 0.561308 | 2_2:+34950008 | Msa0249090:CDS |
| ATACTAACTCTGATAAAGCA+TGG | 0.564281 | 2_2:-34947757 | None:intergenic |
| GGTGGTGGTGGTAGTAGTAG+TGG | 0.564481 | 2_2:+34946334 | Msa0249090:CDS |
| TGATTAGGTAGTATATTTGG+TGG | 0.566982 | 2_2:+34946307 | Msa0249090:intron |
| CAAGATTGAATTTCATCCAG+AGG | 0.567324 | 2_2:+34946378 | Msa0249090:CDS |
| TGTGCTTCCAAAGGATTACA+AGG | 0.570920 | 2_2:+34950552 | Msa0249090:CDS |
| ACAAGCCTTCCTTCCTAACA+GGG | 0.574466 | 2_2:+34950746 | Msa0249090:three_prime_UTR |
| GATTTGTTCAGCAAAGACAT+AGG | 0.582467 | 2_2:-34946162 | None:intergenic |
| ACGGGTGCTTGCATAGTGTA+GGG | 0.588691 | 2_2:-34950371 | None:intergenic |
| TTTCTTTAGATTGTTTCATG+AGG | 0.597153 | 2_2:+34950498 | Msa0249090:intron |
| AAAGGATGTTGTCAGCATGT+AGG | 0.600795 | 2_2:+34950681 | Msa0249090:three_prime_UTR |
| TGGAAGCACATTACAGTCGA+TGG | 0.603438 | 2_2:-34950539 | None:intergenic |
| GCTTGCATAGTGTAGGGACA+TGG | 0.604259 | 2_2:-34950365 | None:intergenic |
| CGACTGTAATGTGCTTCCAA+AGG | 0.605058 | 2_2:+34950543 | Msa0249090:CDS |
| CATGCTCACCAATATACCAA+TGG | 0.618477 | 2_2:+34950149 | Msa0249090:CDS |
| CTTGGGTGTGTACGATCCGG+AGG | 0.620077 | 2_2:+34949945 | Msa0249090:CDS |
| AAGAATTACCGATATGAACA+GGG | 0.633857 | 2_2:-34946187 | None:intergenic |
| GAACTATTAGAAATATTGAA+GGG | 0.635775 | 2_2:+34947733 | Msa0249090:CDS |
| AAGTGTATTTCATCTAATGG+AGG | 0.646885 | 2_2:+34950810 | Msa0249090:three_prime_UTR |
| TACGGGTGCTTGCATAGTGT+AGG | 0.657246 | 2_2:-34950372 | None:intergenic |
| ACTGCATTTGGAGGAAGACA+AGG | 0.659258 | 2_2:+34947959 | Msa0249090:CDS |
| GAATAAGCCAAGAGAGACTG+AGG | 0.670471 | 2_2:+34950190 | Msa0249090:CDS |
| AAATTTACAGGATAATGACC+AGG | 0.690305 | 2_2:+34947558 | Msa0249090:intron |
| ATAGCTTACAGGGTGAAAAG+GGG | 0.691976 | 2_2:-34946404 | None:intergenic |
| GGTCAAAGGATGCTTCACAA+AGG | 0.704577 | 2_2:+34950022 | Msa0249090:CDS |
| CAAGCCTTCCTTCCTAACAG+GGG | 0.717962 | 2_2:+34950747 | Msa0249090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATAATTGTTATTATTATT+TGG | + | chr2_2:34950867-34950886 | Msa0249090:three_prime_UTR | 10.0% |
| !! | ATAAAAAATTGAAAACCTTA+TGG | - | chr2_2:34946259-34946278 | None:intergenic | 15.0% |
| !!! | TGTATGATATTAATTTGATT+AGG | + | chr2_2:34946292-34946311 | Msa0249090:intron | 15.0% |
| !!! | ATTTCAATTTTGTCAAATAA+TGG | - | chr2_2:34947235-34947254 | None:intergenic | 15.0% |
| !! | GTTTATAAAAAGATAATCAA+GGG | - | chr2_2:34948012-34948031 | None:intergenic | 15.0% |
| !! | AGTTTATAAAAAGATAATCA+AGG | - | chr2_2:34948013-34948032 | None:intergenic | 15.0% |
| !! | TTAATATATTAAGTTCATTC+AGG | + | chr2_2:34950123-34950142 | Msa0249090:intron | 15.0% |
| !! | AACAAGAAAAGAAAAAAATG+AGG | + | chr2_2:34946105-34946124 | Msa0249090:exon | 20.0% |
| !! | TTACAGCTTAATTTAAAAAG+AGG | - | chr2_2:34946217-34946236 | None:intergenic | 20.0% |
| !! | TGATTAATATTCTATCCATA+AGG | + | chr2_2:34946241-34946260 | Msa0249090:intron | 20.0% |
| !! | ATTTGATTAGGTAGTATATT+TGG | + | chr2_2:34946304-34946323 | Msa0249090:intron | 20.0% |
| !! | TGAAATTCAATCTTGTATTT+CGG | - | chr2_2:34946373-34946392 | None:intergenic | 20.0% |
| !!! | TTTATTATCTGTGTTTTTAC+AGG | + | chr2_2:34946439-34946458 | Msa0249090:intron | 20.0% |
| !!! | TTTTATTGGTCAATACATTT+AGG | + | chr2_2:34946697-34946716 | Msa0249090:intron | 20.0% |
| !! | TTTATTGGTCAATACATTTA+GGG | + | chr2_2:34946698-34946717 | Msa0249090:intron | 20.0% |
| !! | ATGATATAGATATACAAAGT+TGG | - | chr2_2:34947509-34947528 | None:intergenic | 20.0% |
| !!! | AATTGTGTTACTAAATTTAC+AGG | + | chr2_2:34947546-34947565 | Msa0249090:intron | 20.0% |
| !!! | AATATTTCTAATAGTTCATC+TGG | - | chr2_2:34947730-34947749 | None:intergenic | 20.0% |
| !! | TGAACTATTAGAAATATTGA+AGG | + | chr2_2:34947732-34947751 | Msa0249090:CDS | 20.0% |
| !! | GAACTATTAGAAATATTGAA+GGG | + | chr2_2:34947733-34947752 | Msa0249090:CDS | 20.0% |
| !! | ATCTCTATATTTACTTTGAA+TGG | + | chr2_2:34947784-34947803 | Msa0249090:intron | 20.0% |
| !! | AAGTTTATAAACAGATAGTT+TGG | + | chr2_2:34947828-34947847 | Msa0249090:intron | 20.0% |
| !! | TCTCATAAATCCATTATATT+GGG | - | chr2_2:34948064-34948083 | None:intergenic | 20.0% |
| !!! | AGAAAATACAAATTTTCTTG+TGG | - | chr2_2:34948451-34948470 | None:intergenic | 20.0% |
| !! | TAATATTGTTAGTGTAAAGT+AGG | - | chr2_2:34949429-34949448 | None:intergenic | 20.0% |
| !!! | ACACTAACAATATTAGTTTT+AGG | + | chr2_2:34949434-34949453 | Msa0249090:intron | 20.0% |
| !!! | AATATTAGTTTTAGGAAAAG+TGG | + | chr2_2:34949442-34949461 | Msa0249090:intron | 20.0% |
| ! | AAAACAATAGATAGCTTACA+GGG | - | chr2_2:34946417-34946436 | None:intergenic | 25.0% |
| ! | TAAAACAATAGATAGCTTAC+AGG | - | chr2_2:34946418-34946437 | None:intergenic | 25.0% |
| ! | TGTAATTATATATGTCGTGA+CGG | - | chr2_2:34946536-34946555 | None:intergenic | 25.0% |
| !!! | CTCATTTTGGTTGTTTTTAT+TGG | + | chr2_2:34946683-34946702 | Msa0249090:intron | 25.0% |
| ! | CAAAAAATGAAATGTGATGT+TGG | + | chr2_2:34946771-34946790 | Msa0249090:intron | 25.0% |
| ! | TAACACAATTTCTTATCAGA+AGG | - | chr2_2:34947536-34947555 | None:intergenic | 25.0% |
| !! | ATTTATATGTTACTTGCCTA+AGG | + | chr2_2:34947615-34947634 | Msa0249090:CDS | 25.0% |
| ! | CTCTCATAAATCCATTATAT+TGG | - | chr2_2:34948065-34948084 | None:intergenic | 25.0% |
| !!! | CAATATAATGGATTTATGAG+AGG | + | chr2_2:34948063-34948082 | Msa0249090:intron | 25.0% |
| ! | TATGTCTATAAATGGGTAAA+AGG | - | chr2_2:34948375-34948394 | None:intergenic | 25.0% |
| ! | AAGAACTGTAACAACAAAAT+TGG | - | chr2_2:34948514-34948533 | None:intergenic | 25.0% |
| ! | AGTAGGCAATAAAGAAATAA+TGG | - | chr2_2:34949412-34949431 | None:intergenic | 25.0% |
| ! | ATGGAAGCTATATAAGAATT+TGG | - | chr2_2:34949697-34949716 | None:intergenic | 25.0% |
| ! | AATGTATGACTTTACAAGAT+TGG | - | chr2_2:34949865-34949884 | None:intergenic | 25.0% |
| !! | TAGAAATGTCAGAAAGATTT+TGG | - | chr2_2:34949987-34950006 | None:intergenic | 25.0% |
| ! | TTCTGACATTTCTACATTTA+AGG | + | chr2_2:34949993-34950012 | Msa0249090:CDS | 25.0% |
| ! | ATGGAATTATTAACGAAAAG+AGG | - | chr2_2:34951050-34951069 | None:intergenic | 25.0% |
| AAGAATTACCGATATGAACA+GGG | - | chr2_2:34946190-34946209 | None:intergenic | 30.0% | |
| AAAGAATTACCGATATGAAC+AGG | - | chr2_2:34946191-34946210 | None:intergenic | 30.0% | |
| TGATTAGGTAGTATATTTGG+TGG | + | chr2_2:34946307-34946326 | Msa0249090:intron | 30.0% | |
| AACAACCAAAATGAGACTTA+AGG | - | chr2_2:34946678-34946697 | None:intergenic | 30.0% | |
| AATACATTTAGGGACTATAG+TGG | + | chr2_2:34946708-34946727 | Msa0249090:intron | 30.0% | |
| ! | TTTTTGTCCTAAACTGTATG+AGG | - | chr2_2:34946739-34946758 | None:intergenic | 30.0% |
| TCTATTCTTGAATGTTACCA+CGG | + | chr2_2:34946888-34946907 | Msa0249090:intron | 30.0% | |
| TTGATGTTATCAGAGAGATT+GGG | + | chr2_2:34946983-34947002 | Msa0249090:intron | 30.0% | |
| ATATCTCCTATCTCAGAAAA+AGG | - | chr2_2:34947027-34947046 | None:intergenic | 30.0% | |
| AGAAATGTTAACTGACTGTA+AGG | + | chr2_2:34947056-34947075 | Msa0249090:intron | 30.0% | |
| TCTATAAGTGTTAACGATTG+CGG | + | chr2_2:34947092-34947111 | Msa0249090:intron | 30.0% | |
| ! | GAATTTTATGACAACTGTCA+GGG | - | chr2_2:34947192-34947211 | None:intergenic | 30.0% |
| ! | AGAATTTTATGACAACTGTC+AGG | - | chr2_2:34947193-34947212 | None:intergenic | 30.0% |
| ! | ATTTTGTCAAATAATGGCCA+TGG | - | chr2_2:34947229-34947248 | None:intergenic | 30.0% |
| TTGAATGTAACCACATATGT+CGG | - | chr2_2:34947325-34947344 | None:intergenic | 30.0% | |
| AAATTTACAGGATAATGACC+AGG | + | chr2_2:34947558-34947577 | Msa0249090:intron | 30.0% | |
| AATTTCTGTCCATTCTTATC+CGG | - | chr2_2:34947598-34947617 | None:intergenic | 30.0% | |
| TGATTGTTGAAACTGAGAAA+AGG | + | chr2_2:34947689-34947708 | Msa0249090:CDS | 30.0% | |
| GATTGTTGAAACTGAGAAAA+GGG | + | chr2_2:34947690-34947709 | Msa0249090:CDS | 30.0% | |
| ATACTAACTCTGATAAAGCA+TGG | - | chr2_2:34947760-34947779 | None:intergenic | 30.0% | |
| ATTTACAACAAGACTTCTGA+GGG | - | chr2_2:34947855-34947874 | None:intergenic | 30.0% | |
| TGTAAATCACTTCCTTACAT+TGG | + | chr2_2:34947868-34947887 | Msa0249090:intron | 30.0% | |
| AAAGCACATTATCCAATGTA+AGG | - | chr2_2:34947883-34947902 | None:intergenic | 30.0% | |
| ! | CTAAATGTTGCATGATAATG+TGG | + | chr2_2:34948120-34948139 | Msa0249090:intron | 30.0% |
| ! | CTGCAAAGTTTACATGTTTT+AGG | - | chr2_2:34948214-34948233 | None:intergenic | 30.0% |
| ATTTCTCTTTCCAAGTCTAA+TGG | + | chr2_2:34948256-34948275 | Msa0249090:intron | 30.0% | |
| ATCCAGTTACAACTTTGTAT+GGG | + | chr2_2:34948317-34948336 | Msa0249090:intron | 30.0% | |
| TTACCCATTTATAGACATAG+AGG | + | chr2_2:34948376-34948395 | Msa0249090:intron | 30.0% | |
| TACCCATTTATAGACATAGA+GGG | + | chr2_2:34948377-34948396 | Msa0249090:intron | 30.0% | |
| !! | GGGCATTTTTGAAAAATTTG+TGG | + | chr2_2:34948397-34948416 | Msa0249090:intron | 30.0% |
| CTGTAACAACAAAATTGGAT+TGG | - | chr2_2:34948509-34948528 | None:intergenic | 30.0% | |
| ACAGTTCTTACAAAGCTTTA+AGG | + | chr2_2:34948525-34948544 | Msa0249090:intron | 30.0% | |
| AATATAATACATCTTGCCCT+TGG | + | chr2_2:34948569-34948588 | Msa0249090:intron | 30.0% | |
| TTTGCCCTATAAATACATCT+TGG | + | chr2_2:34948627-34948646 | Msa0249090:intron | 30.0% | |
| TTGCCCTATAAATACATCTT+GGG | + | chr2_2:34948628-34948647 | Msa0249090:intron | 30.0% | |
| CTTCCCAAGATGTATTTATA+GGG | - | chr2_2:34948634-34948653 | None:intergenic | 30.0% | |
| TTTGTTTCATCATCATGGAT+GGG | + | chr2_2:34948720-34948739 | Msa0249090:intron | 30.0% | |
| ! | TTGAACTCGTCTAAAGTTTA+GGG | - | chr2_2:34948854-34948873 | None:intergenic | 30.0% |
| ! | ATTGAACTCGTCTAAAGTTT+AGG | - | chr2_2:34948855-34948874 | None:intergenic | 30.0% |
| ! | CAAGTGCCAAATATTAGTTT+GGG | - | chr2_2:34949089-34949108 | None:intergenic | 30.0% |
| ACAAGTGCCAAATATTAGTT+TGG | - | chr2_2:34949090-34949109 | None:intergenic | 30.0% | |
| CCAAAAACAATGGAAAATGA+GGG | - | chr2_2:34949323-34949342 | None:intergenic | 30.0% | |
| !! | CCTCATTTTCCATTGTTTTT+GGG | + | chr2_2:34949321-34949340 | Msa0249090:intron | 30.0% |
| AGCTATATAAGAATTTGGTC+TGG | - | chr2_2:34949692-34949711 | None:intergenic | 30.0% | |
| ATTCTTATATAGCTTCCATG+AGG | + | chr2_2:34949698-34949717 | Msa0249090:intron | 30.0% | |
| ATCAATGATCATAACCAGTA+TGG | - | chr2_2:34949745-34949764 | None:intergenic | 30.0% | |
| AATGTACATTTCTCTGTTAC+AGG | + | chr2_2:34949906-34949925 | Msa0249090:intron | 30.0% | |
| ! | ACAAAGGTACATTCCTTATT+GGG | + | chr2_2:34950038-34950057 | Msa0249090:intron | 30.0% |
| CTTATTCGTAAGATCACATA+CGG | - | chr2_2:34950177-34950196 | None:intergenic | 30.0% | |
| ! | GATTTCGTATCTTTTATCAC+AGG | + | chr2_2:34950263-34950282 | Msa0249090:intron | 30.0% |
| CGTCTATTAAGTTAGAACAT+AGG | + | chr2_2:34950439-34950458 | Msa0249090:intron | 30.0% | |
| AAATGAAAAGCTCAAATGCA+TGG | - | chr2_2:34950479-34950498 | None:intergenic | 30.0% | |
| TACACAATGTCAACGTAAAA+AGG | + | chr2_2:34950663-34950682 | Msa0249090:three_prime_UTR | 30.0% | |
| GTTCTACAATGAACAAAAAG+CGG | + | chr2_2:34950703-34950722 | Msa0249090:three_prime_UTR | 30.0% | |
| TTAGATGAAATACACTTCAC+AGG | - | chr2_2:34950807-34950826 | None:intergenic | 30.0% | |
| GTGAAGTGTATTTCATCTAA+TGG | + | chr2_2:34950807-34950826 | Msa0249090:three_prime_UTR | 30.0% | |
| AAGTGTATTTCATCTAATGG+AGG | + | chr2_2:34950810-34950829 | Msa0249090:three_prime_UTR | 30.0% | |
| ! | GATTTGTTCAGCAAAGACAT+AGG | - | chr2_2:34946165-34946184 | None:intergenic | 35.0% |
| CAAATCTTCCCTGTTCATAT+CGG | + | chr2_2:34946179-34946198 | Msa0249090:CDS | 35.0% | |
| CAAGATTGAATTTCATCCAG+AGG | + | chr2_2:34946378-34946397 | Msa0249090:CDS | 35.0% | |
| CTTCATAGACTAGACCAAAA+CGG | - | chr2_2:34946472-34946491 | None:intergenic | 35.0% | |
| AGACCTATGAAGCACATATA+CGG | - | chr2_2:34946602-34946621 | None:intergenic | 35.0% | |
| ! | CACATCCTTAAGTCTCATTT+TGG | + | chr2_2:34946670-34946689 | Msa0249090:intron | 35.0% |
| TATACGAAACATTTCAACCG+TGG | - | chr2_2:34946908-34946927 | None:intergenic | 35.0% | |
| TTCGTATAGTGTATCTATGC+TGG | + | chr2_2:34946920-34946939 | Msa0249090:intron | 35.0% | |
| ! | ATAGTGTATCTATGCTGGTT+AGG | + | chr2_2:34946925-34946944 | Msa0249090:intron | 35.0% |
| TGGTTAGGAATCAAAACGAT+GGG | + | chr2_2:34946940-34946959 | Msa0249090:intron | 35.0% | |
| GTTGATGTTATCAGAGAGAT+TGG | + | chr2_2:34946982-34947001 | Msa0249090:intron | 35.0% | |
| !!! | TTTCGTCCTTTTTCTGAGAT+AGG | + | chr2_2:34947018-34947037 | Msa0249090:intron | 35.0% |
| !!! | GACTCAAAATGGTGGATTTT+TGG | - | chr2_2:34947129-34947148 | None:intergenic | 35.0% |
| ATTCTTATCCGGTACAACTA+AGG | - | chr2_2:34947587-34947606 | None:intergenic | 35.0% | |
| TTAGTTGTACCGGATAAGAA+TGG | + | chr2_2:34947586-34947605 | Msa0249090:CDS | 35.0% | |
| ! | TATATGTTACTTGCCTAAGG+TGG | + | chr2_2:34947618-34947637 | Msa0249090:CDS | 35.0% |
| !!! | CTTTTTTCCTTTTCCACCTT+AGG | - | chr2_2:34947634-34947653 | None:intergenic | 35.0% |
| AAGGTGGAAAAGGAAAAAAG+TGG | + | chr2_2:34947634-34947653 | Msa0249090:CDS | 35.0% | |
| GATTTACAACAAGACTTCTG+AGG | - | chr2_2:34947856-34947875 | None:intergenic | 35.0% | |
| GAAATTTCGACAACTGCATT+TGG | + | chr2_2:34947947-34947966 | Msa0249090:CDS | 35.0% | |
| CTTCTATTTGCTTCATCCTT+TGG | + | chr2_2:34948031-34948050 | Msa0249090:intron | 35.0% | |
| TATATTGGGCAACTAACCAA+AGG | - | chr2_2:34948050-34948069 | None:intergenic | 35.0% | |
| ! | TGGTTAGTTGCCCAATATAA+TGG | + | chr2_2:34948051-34948070 | Msa0249090:intron | 35.0% |
| TGCATCATAAAACTGCTGTA+AGG | + | chr2_2:34948293-34948312 | Msa0249090:intron | 35.0% | |
| GCATCATAAAACTGCTGTAA+GGG | + | chr2_2:34948294-34948313 | Msa0249090:intron | 35.0% | |
| GATCCAGTTACAACTTTGTA+TGG | + | chr2_2:34948316-34948335 | Msa0249090:intron | 35.0% | |
| TCCAGTTACAACTTTGTATG+GGG | + | chr2_2:34948318-34948337 | Msa0249090:intron | 35.0% | |
| TGCCCTCTATGTCTATAAAT+GGG | - | chr2_2:34948382-34948401 | None:intergenic | 35.0% | |
| ATGCCCTCTATGTCTATAAA+TGG | - | chr2_2:34948383-34948402 | None:intergenic | 35.0% | |
| !! | TCTTACAAAGCTTTAAGGCT+AGG | + | chr2_2:34948530-34948549 | Msa0249090:intron | 35.0% |
| GCAAAACATTTGCACTCTAA+GGG | - | chr2_2:34948612-34948631 | None:intergenic | 35.0% | |
| GCTTCCCAAGATGTATTTAT+AGG | - | chr2_2:34948635-34948654 | None:intergenic | 35.0% | |
| ATAAATACATCTTGGGAAGC+AGG | + | chr2_2:34948635-34948654 | Msa0249090:intron | 35.0% | |
| TAAATACATCTTGGGAAGCA+GGG | + | chr2_2:34948636-34948655 | Msa0249090:intron | 35.0% | |
| AATGTTAATCTCTGAGCTGA+GGG | + | chr2_2:34948697-34948716 | Msa0249090:intron | 35.0% | |
| GTTTGTTTCATCATCATGGA+TGG | + | chr2_2:34948719-34948738 | Msa0249090:intron | 35.0% | |
| GTCTATGTTATGAAGTAACC+CGG | + | chr2_2:34948752-34948771 | Msa0249090:intron | 35.0% | |
| !!! | AGCTTCTTGTTTTGACTAGA+AGG | + | chr2_2:34948945-34948964 | Msa0249090:intron | 35.0% |
| GAACACTGGAATATTCTAAG+AGG | - | chr2_2:34949016-34949035 | None:intergenic | 35.0% | |
| !! | TGAGCGTTTTATTAGAACAC+TGG | - | chr2_2:34949030-34949049 | None:intergenic | 35.0% |
| TAAAACGCTCAACTTTGCTA+AGG | + | chr2_2:34949039-34949058 | Msa0249090:intron | 35.0% | |
| ! | AAATATTAGTTTGGGTGCAG+TGG | - | chr2_2:34949081-34949100 | None:intergenic | 35.0% |
| ACTGCACCCAAACTAATATT+TGG | + | chr2_2:34949080-34949099 | Msa0249090:intron | 35.0% | |
| TTAAATTTGAGCTGTTCGAC+TGG | + | chr2_2:34949110-34949129 | Msa0249090:intron | 35.0% | |
| CTAATGGTCAGATTCATTGA+AGG | - | chr2_2:34949143-34949162 | None:intergenic | 35.0% | |
| TTTCGAAATAACTCCAAGGT+TGG | - | chr2_2:34949186-34949205 | None:intergenic | 35.0% | |
| ! | AACCTTGGAGTTATTTCGAA+AGG | + | chr2_2:34949185-34949204 | Msa0249090:intron | 35.0% |
| AAGGGAAAAAAAGACAAGAC+AGG | - | chr2_2:34949219-34949238 | None:intergenic | 35.0% | |
| ! | GAAAGTTCTATTGCTCTGAA+GGG | - | chr2_2:34949237-34949256 | None:intergenic | 35.0% |
| ! | CCCTCATTTTCCATTGTTTT+TGG | + | chr2_2:34949320-34949339 | Msa0249090:intron | 35.0% |
| CCCAAAAACAATGGAAAATG+AGG | - | chr2_2:34949324-34949343 | None:intergenic | 35.0% | |
| ! | TCTTAGAAGCACAGAGTAAT+AGG | + | chr2_2:34949526-34949545 | Msa0249090:intron | 35.0% |
| ! | CTTAGAAGCACAGAGTAATA+GGG | + | chr2_2:34949527-34949546 | Msa0249090:intron | 35.0% |
| ACAGAGTAATAGGGTATGAT+TGG | + | chr2_2:34949536-34949555 | Msa0249090:intron | 35.0% | |
| TATATAGCTTCCATGAGGTT+TGG | + | chr2_2:34949703-34949722 | Msa0249090:intron | 35.0% | |
| ATATAGCTTCCATGAGGTTT+GGG | + | chr2_2:34949704-34949723 | Msa0249090:intron | 35.0% | |
| CAGTATGGTAAATGAACCAA+AGG | - | chr2_2:34949730-34949749 | None:intergenic | 35.0% | |
| ! | CTTTGGTTCATTTACCATAC+TGG | + | chr2_2:34949728-34949747 | Msa0249090:intron | 35.0% |
| CTGGTTATGATCATTGATAG+CGG | + | chr2_2:34949747-34949766 | Msa0249090:intron | 35.0% | |
| GTAGTCCAGGAATTTATCTT+GGG | + | chr2_2:34949928-34949947 | Msa0249090:CDS | 35.0% | |
| TTTCTACATTTAAGGATCCC+CGG | + | chr2_2:34950001-34950020 | Msa0249090:CDS | 35.0% | |
| ! | CACAAAGGTACATTCCTTAT+TGG | + | chr2_2:34950037-34950056 | Msa0249090:intron | 35.0% |
| TTCCTTATTGGGCTATTAGT+TGG | + | chr2_2:34950049-34950068 | Msa0249090:intron | 35.0% | |
| TTCCAACTAATAGCCCAATA+AGG | - | chr2_2:34950054-34950073 | None:intergenic | 35.0% | |
| TATTGGGCTATTAGTTGGAA+TGG | + | chr2_2:34950054-34950073 | Msa0249090:intron | 35.0% | |
| ATACGGTTCCATTGGTATAT+TGG | - | chr2_2:34950160-34950179 | None:intergenic | 35.0% | |
| ! | ACAAGTTGAAATCTCTGTGA+TGG | - | chr2_2:34950328-34950347 | None:intergenic | 35.0% |
| ACACAAACTTCACAGAAAGA+TGG | - | chr2_2:34950410-34950429 | None:intergenic | 35.0% | |
| TTACCATCCTTGTAATCCTT+TGG | - | chr2_2:34950562-34950581 | None:intergenic | 35.0% | |
| GAAACAAGAAGACAGAGATA+TGG | + | chr2_2:34950585-34950604 | Msa0249090:CDS | 35.0% | |
| CAGAGATATGGAGATTGTTA+TGG | + | chr2_2:34950597-34950616 | Msa0249090:CDS | 35.0% | |
| CACTTCACAGGAAAATATCA+TGG | - | chr2_2:34950795-34950814 | None:intergenic | 35.0% | |
| TTTCATCTAATGGAGGTTCT+TGG | + | chr2_2:34950817-34950836 | Msa0249090:three_prime_UTR | 35.0% | |
| ATGCATGTTTAGCACTTTAG+AGG | + | chr2_2:34950928-34950947 | Msa0249090:three_prime_UTR | 35.0% | |
| ! | GGTAGTATATTTGGTGGTAG+TGG | + | chr2_2:34946313-34946332 | Msa0249090:intron | 40.0% |
| !! | AGTATATTTGGTGGTAGTGG+TGG | + | chr2_2:34946316-34946335 | Msa0249090:CDS | 40.0% |
| ATAGCTTACAGGGTGAAAAG+GGG | - | chr2_2:34946407-34946426 | None:intergenic | 40.0% | |
| GATAGCTTACAGGGTGAAAA+GGG | - | chr2_2:34946408-34946427 | None:intergenic | 40.0% | |
| AGATAGCTTACAGGGTGAAA+AGG | - | chr2_2:34946409-34946428 | None:intergenic | 40.0% | |
| TTGGTCTAGTCTATGAAGCA+CGG | + | chr2_2:34946474-34946493 | Msa0249090:intron | 40.0% | |
| TGTCCGTATATGTGCTTCAT+AGG | + | chr2_2:34946596-34946615 | Msa0249090:intron | 40.0% | |
| AGTGTAATTCGTCGTCACAT+TGG | + | chr2_2:34946622-34946641 | Msa0249090:intron | 40.0% | |
| CTGGTTAGGAATCAAAACGA+TGG | + | chr2_2:34946939-34946958 | Msa0249090:intron | 40.0% | |
| ! | CAAAACGATGGGTTTAACTG+CGG | + | chr2_2:34946951-34946970 | Msa0249090:intron | 40.0% |
| AGAGAGATTGGGAATAAGAG+TGG | + | chr2_2:34946994-34947013 | Msa0249090:intron | 40.0% | |
| GAGAGATTGGGAATAAGAGT+GGG | + | chr2_2:34946995-34947014 | Msa0249090:intron | 40.0% | |
| TAAGTGTTAACGATTGCGGA+AGG | + | chr2_2:34947096-34947115 | Msa0249090:intron | 40.0% | |
| ! | CATTTTACGGCGACTCAAAA+TGG | - | chr2_2:34947140-34947159 | None:intergenic | 40.0% |
| ! | AGCGACACTATGGCATTTTA+CGG | - | chr2_2:34947153-34947172 | None:intergenic | 40.0% |
| TTGTCAAATAATGGCCATGG+TGG | - | chr2_2:34947226-34947245 | None:intergenic | 40.0% | |
| ! | GTACTGACACTTCATGTTGA+AGG | + | chr2_2:34947262-34947281 | Msa0249090:intron | 40.0% |
| CAAAACTTGTACGTAGACAC+AGG | - | chr2_2:34947373-34947392 | None:intergenic | 40.0% | |
| TTACTTGCCTAAGGTGGAAA+AGG | + | chr2_2:34947624-34947643 | Msa0249090:CDS | 40.0% | |
| !! | ATGTGCTTTTTGCAGCAAGA+AGG | + | chr2_2:34947894-34947913 | Msa0249090:intron | 40.0% |
| ATTTCGACAACTGCATTTGG+AGG | + | chr2_2:34947950-34947969 | Msa0249090:CDS | 40.0% | |
| CACAACTGAATGCAATCAAG+GGG | - | chr2_2:34947988-34948007 | None:intergenic | 40.0% | |
| CCACAACTGAATGCAATCAA+GGG | - | chr2_2:34947989-34948008 | None:intergenic | 40.0% | |
| TGTATTCTGATCCAACTCTC+AGG | - | chr2_2:34948162-34948181 | None:intergenic | 40.0% | |
| ACCCCATACAAAGTTGTAAC+TGG | - | chr2_2:34948322-34948341 | None:intergenic | 40.0% | |
| ATGGGGTTCAATCCTTTGTA+CGG | + | chr2_2:34948335-34948354 | Msa0249090:intron | 40.0% | |
| CAATCCAACTTGTCTTGTGA+CGG | - | chr2_2:34948426-34948445 | None:intergenic | 40.0% | |
| CAGATTTCCATGTTCTCCAA+GGG | - | chr2_2:34948588-34948607 | None:intergenic | 40.0% | |
| GGCAAAACATTTGCACTCTA+AGG | - | chr2_2:34948613-34948632 | None:intergenic | 40.0% | |
| AATCCTCACACTTCACTGTA+TGG | - | chr2_2:34948664-34948683 | None:intergenic | 40.0% | |
| CTCAGAGATTAACATTGAGG+AGG | - | chr2_2:34948693-34948712 | None:intergenic | 40.0% | |
| CAGCTCAGAGATTAACATTG+AGG | - | chr2_2:34948696-34948715 | None:intergenic | 40.0% | |
| CAATGTTAATCTCTGAGCTG+AGG | + | chr2_2:34948696-34948715 | Msa0249090:intron | 40.0% | |
| ! | GAGGGTTTGTTTCATCATCA+TGG | + | chr2_2:34948715-34948734 | Msa0249090:intron | 40.0% |
| ATGTTATGAAGTAACCCGGT+AGG | + | chr2_2:34948756-34948775 | Msa0249090:intron | 40.0% | |
| CTTTAGACGAGTTCAATGTG+AGG | + | chr2_2:34948858-34948877 | Msa0249090:intron | 40.0% | |
| ! | ACGAGTTCAATGTGAGGTTT+TGG | + | chr2_2:34948864-34948883 | Msa0249090:intron | 40.0% |
| !!! | TCTTGTTTTGACTAGAAGGC+TGG | + | chr2_2:34948949-34948968 | Msa0249090:intron | 40.0% |
| !!! | CTTGTTTTGACTAGAAGGCT+GGG | + | chr2_2:34948950-34948969 | Msa0249090:intron | 40.0% |
| CCATAGGTCAGTGAATCTAA+TGG | - | chr2_2:34949159-34949178 | None:intergenic | 40.0% | |
| CCATTAGATTCACTGACCTA+TGG | + | chr2_2:34949156-34949175 | Msa0249090:intron | 40.0% | |
| GAAATAACTCCAAGGTTGGA+AGG | - | chr2_2:34949182-34949201 | None:intergenic | 40.0% | |
| TGCCTTTCGAAATAACTCCA+AGG | - | chr2_2:34949190-34949209 | None:intergenic | 40.0% | |
| CGAAAGTTCTATTGCTCTGA+AGG | - | chr2_2:34949238-34949257 | None:intergenic | 40.0% | |
| AATAGAACTTTCGCCCTTCT+TGG | + | chr2_2:34949245-34949264 | Msa0249090:intron | 40.0% | |
| ! | CACGAATGGTTTTCCAAGAA+GGG | - | chr2_2:34949261-34949280 | None:intergenic | 40.0% |
| ! | ACACGAATGGTTTTCCAAGA+AGG | - | chr2_2:34949262-34949281 | None:intergenic | 40.0% |
| TTGGAAAACCATTCGTGTTC+TGG | + | chr2_2:34949264-34949283 | Msa0249090:intron | 40.0% | |
| TTTAGAAGCCAGAACACGAA+TGG | - | chr2_2:34949275-34949294 | None:intergenic | 40.0% | |
| TGACTCACACCCAAAAACAA+TGG | - | chr2_2:34949333-34949352 | None:intergenic | 40.0% | |
| GACATCCATGTTGTGTTCAA+AGG | + | chr2_2:34949362-34949381 | Msa0249090:intron | 40.0% | |
| AGACCTCGAGATTTCAATGA+AGG | - | chr2_2:34949473-34949492 | None:intergenic | 40.0% | |
| TCATTGAAATCTCGAGGTCT+TGG | + | chr2_2:34949473-34949492 | Msa0249090:intron | 40.0% | |
| ! | TAGGGTATGATTGGTGATCA+TGG | + | chr2_2:34949545-34949564 | Msa0249090:intron | 40.0% |
| ! | GTATGATTGGTGATCATGGA+TGG | + | chr2_2:34949549-34949568 | Msa0249090:intron | 40.0% |
| TCCATACCTTTCTTGTGACT+AGG | - | chr2_2:34949600-34949619 | None:intergenic | 40.0% | |
| ! | AGTCACAAGAAAGGTATGGA+TGG | + | chr2_2:34949600-34949619 | Msa0249090:intron | 40.0% |
| ! | GGTTTTCCAATTTGGAGACT+CGG | - | chr2_2:34949655-34949674 | None:intergenic | 40.0% |
| ! | CAAACAGGGGTTTTCCAATT+TGG | - | chr2_2:34949663-34949682 | None:intergenic | 40.0% |
| TGGTCTGGAAACAACAAACA+GGG | - | chr2_2:34949677-34949696 | None:intergenic | 40.0% | |
| TTGGTCTGGAAACAACAAAC+AGG | - | chr2_2:34949678-34949697 | None:intergenic | 40.0% | |
| GGTAGTCCAGGAATTTATCT+TGG | + | chr2_2:34949927-34949946 | Msa0249090:intron | 40.0% | |
| ACACACCCAAGATAAATTCC+TGG | - | chr2_2:34949936-34949955 | None:intergenic | 40.0% | |
| ! | TTTGTGAAGCATCCTTTGAC+CGG | - | chr2_2:34950023-34950042 | None:intergenic | 40.0% |
| GTTGGAATGGTTTCACTACA+TGG | + | chr2_2:34950067-34950086 | Msa0249090:intron | 40.0% | |
| CATGCTCACCAATATACCAA+TGG | + | chr2_2:34950149-34950168 | Msa0249090:CDS | 40.0% | |
| AAGATCACATACGGTTCCAT+TGG | - | chr2_2:34950168-34950187 | None:intergenic | 40.0% | |
| TTTCATACCTCAGTCTCTCT+TGG | - | chr2_2:34950200-34950219 | None:intergenic | 40.0% | |
| GATACGAAATCAGTGCAATG+AGG | - | chr2_2:34950254-34950273 | None:intergenic | 40.0% | |
| ! | CGTATCTTTTATCACAGGTG+AGG | + | chr2_2:34950268-34950287 | Msa0249090:intron | 40.0% |
| ATGGAACTGATCATTGCTCT+GGG | - | chr2_2:34950309-34950328 | None:intergenic | 40.0% | |
| AGATGGAAACAGAGGACTTA+CGG | - | chr2_2:34950393-34950412 | None:intergenic | 40.0% | |
| TCACAGAAAGATGGAAACAG+AGG | - | chr2_2:34950401-34950420 | None:intergenic | 40.0% | |
| GAAAAGCTCAAATGCATGGT+GGG | - | chr2_2:34950475-34950494 | None:intergenic | 40.0% | |
| TGAAAAGCTCAAATGCATGG+TGG | - | chr2_2:34950476-34950495 | None:intergenic | 40.0% | |
| TGTGCTTCCAAAGGATTACA+AGG | + | chr2_2:34950552-34950571 | Msa0249090:CDS | 40.0% | |
| CTTCCAAAGGATTACAAGGA+TGG | + | chr2_2:34950556-34950575 | Msa0249090:CDS | 40.0% | |
| AAAGGATGTTGTCAGCATGT+AGG | + | chr2_2:34950681-34950700 | Msa0249090:three_prime_UTR | 40.0% | |
| ! | CGCGTTTGTGTTAAGTTGTG+AGG | + | chr2_2:34946079-34946098 | Msa0249090:five_prime_UTR | 45.0% |
| !! | ATATTTGGTGGTAGTGGTGG+TGG | + | chr2_2:34946319-34946338 | Msa0249090:CDS | 45.0% |
| CATAGACTAGACCAAAACGG+TGG | - | chr2_2:34946469-34946488 | None:intergenic | 45.0% | |
| TATGAAGCACGGACACTCAT+CGG | + | chr2_2:34946485-34946504 | Msa0249090:intron | 45.0% | |
| GGCAATGCCTCATACAGTTT+AGG | + | chr2_2:34946729-34946748 | Msa0249090:intron | 45.0% | |
| TTTACGGCGACTCAAAATGG+TGG | - | chr2_2:34947137-34947156 | None:intergenic | 45.0% | |
| TGTCGCTATCCTTCCCAAAT+TGG | + | chr2_2:34947166-34947185 | Msa0249090:intron | 45.0% | |
| ACAACTGTCAGGGCCAATTT+GGG | - | chr2_2:34947182-34947201 | None:intergenic | 45.0% | |
| CGTGTCTGATCTCTATGTCA+GGG | + | chr2_2:34947285-34947304 | Msa0249090:intron | 45.0% | |
| AACCACATATGTCGGTGACT+CGG | - | chr2_2:34947317-34947336 | None:intergenic | 45.0% | |
| GTAGTCACAGTCACAGATAC+TGG | - | chr2_2:34947399-34947418 | None:intergenic | 45.0% | |
| CCAGGAATCCTTAGTTGTAC+CGG | + | chr2_2:34947576-34947595 | Msa0249090:CDS | 45.0% | |
| CTAACATTGTGCTGCATAGG+AGG | - | chr2_2:34947664-34947683 | None:intergenic | 45.0% | |
| CTGCTAACATTGTGCTGCAT+AGG | - | chr2_2:34947667-34947686 | None:intergenic | 45.0% | |
| ! | GCTTTTTGCAGCAAGAAGGT+TGG | + | chr2_2:34947898-34947917 | Msa0249090:intron | 45.0% |
| ! | TTTTGCAGCAAGAAGGTTGG+TGG | + | chr2_2:34947901-34947920 | Msa0249090:intron | 45.0% |
| ACTGCATTTGGAGGAAGACA+AGG | + | chr2_2:34947959-34947978 | Msa0249090:CDS | 45.0% | |
| CCCTTGATTGCATTCAGTTG+TGG | + | chr2_2:34947986-34948005 | Msa0249090:intron | 45.0% | |
| GCCACAACTGAATGCAATCA+AGG | - | chr2_2:34947990-34948009 | None:intergenic | 45.0% | |
| TTATGATGCAGCAGCCTGTA+GGG | - | chr2_2:34948283-34948302 | None:intergenic | 45.0% | |
| TTTATGATGCAGCAGCCTGT+AGG | - | chr2_2:34948284-34948303 | None:intergenic | 45.0% | |
| TGGGGTTCAATCCTTTGTAC+GGG | + | chr2_2:34948336-34948355 | Msa0249090:intron | 45.0% | |
| TCAATCCTTTGTACGGGCTT+TGG | + | chr2_2:34948342-34948361 | Msa0249090:intron | 45.0% | |
| AGAATCCAAAGCCCGTACAA+AGG | - | chr2_2:34948350-34948369 | None:intergenic | 45.0% | |
| CCAGATTTCCATGTTCTCCA+AGG | - | chr2_2:34948589-34948608 | None:intergenic | 45.0% | |
| CCTTGGAGAACATGGAAATC+TGG | + | chr2_2:34948586-34948605 | Msa0249090:intron | 45.0% | |
| GATCCATACAGTGAAGTGTG+AGG | + | chr2_2:34948658-34948677 | Msa0249090:intron | 45.0% | |
| GAGATTAACATTGAGGAGGC+TGG | - | chr2_2:34948689-34948708 | None:intergenic | 45.0% | |
| TATGAAGTAACCCGGTAGGT+AGG | + | chr2_2:34948760-34948779 | Msa0249090:intron | 45.0% | |
| TCTCCACATTTCCTACCTAC+CGG | - | chr2_2:34948774-34948793 | None:intergenic | 45.0% | |
| GGAAATGTGGAGAGCTGATT+TGG | + | chr2_2:34948781-34948800 | Msa0249090:intron | 45.0% | |
| ! | ACAGAGTTGGCTCAATCTAG+AGG | - | chr2_2:34948821-34948840 | None:intergenic | 45.0% |
| GGGCTCAAACAAAACAGAGT+TGG | - | chr2_2:34948834-34948853 | None:intergenic | 45.0% | |
| GAGCTTAGTAGGTGAATCAG+CGG | + | chr2_2:34948915-34948934 | Msa0249090:intron | 45.0% | |
| TTAGTAGGTGAATCAGCGGT+AGG | + | chr2_2:34948919-34948938 | Msa0249090:intron | 45.0% | |
| TTTGACTAGAAGGCTGGGTA+TGG | + | chr2_2:34948955-34948974 | Msa0249090:intron | 45.0% | |
| ! | ATTAGTTTGGGTGCAGTGGA+GGG | - | chr2_2:34949077-34949096 | None:intergenic | 45.0% |
| ! | TATTAGTTTGGGTGCAGTGG+AGG | - | chr2_2:34949078-34949097 | None:intergenic | 45.0% |
| TCCATGTTGTGTTCAAAGGC+TGG | + | chr2_2:34949366-34949385 | Msa0249090:intron | 45.0% | |
| TTCAAAGGCTGGCAGTAACT+TGG | + | chr2_2:34949377-34949396 | Msa0249090:intron | 45.0% | |
| ! | ATTGGTGATCATGGATGGCA+TGG | + | chr2_2:34949554-34949573 | Msa0249090:intron | 45.0% |
| TTTCTTGTGACTAGGCGACA+TGG | - | chr2_2:34949592-34949611 | None:intergenic | 45.0% | |
| ATGTCGCCTAGTCACAAGAA+AGG | + | chr2_2:34949591-34949610 | Msa0249090:intron | 45.0% | |
| GCCTAGTCACAAGAAAGGTA+TGG | + | chr2_2:34949596-34949615 | Msa0249090:intron | 45.0% | |
| ! | TTCCAATTTGGAGACTCGGT+TGG | - | chr2_2:34949651-34949670 | None:intergenic | 45.0% |
| GGTCTGGAAACAACAAACAG+GGG | - | chr2_2:34949676-34949695 | None:intergenic | 45.0% | |
| TTCTCTGTTACAGGTAGTCC+AGG | + | chr2_2:34949915-34949934 | Msa0249090:intron | 45.0% | |
| TATCTTGGGTGTGTACGATC+CGG | + | chr2_2:34949942-34949961 | Msa0249090:CDS | 45.0% | |
| ATTTAAGGATCCCCGGTCAA+AGG | + | chr2_2:34950008-34950027 | Msa0249090:CDS | 45.0% | |
| ! | TTGTGAAGCATCCTTTGACC+GGG | - | chr2_2:34950022-34950041 | None:intergenic | 45.0% |
| GGTCAAAGGATGCTTCACAA+AGG | + | chr2_2:34950022-34950041 | Msa0249090:CDS | 45.0% | |
| GAATAAGCCAAGAGAGACTG+AGG | + | chr2_2:34950190-34950209 | Msa0249090:CDS | 45.0% | |
| GATGGAACTGATCATTGCTC+TGG | - | chr2_2:34950310-34950329 | None:intergenic | 45.0% | |
| GATGGAAACAGAGGACTTAC+GGG | - | chr2_2:34950392-34950411 | None:intergenic | 45.0% | |
| TTCATGAGGAGAGACCAGTA+TGG | + | chr2_2:34950512-34950531 | Msa0249090:CDS | 45.0% | |
| ! | TGGAAGCACATTACAGTCGA+TGG | - | chr2_2:34950542-34950561 | None:intergenic | 45.0% |
| CGACTGTAATGTGCTTCCAA+AGG | + | chr2_2:34950543-34950562 | Msa0249090:CDS | 45.0% | |
| TACAAGCCTTCCTTCCTAAC+AGG | + | chr2_2:34950745-34950764 | Msa0249090:three_prime_UTR | 45.0% | |
| ACAAGCCTTCCTTCCTAACA+GGG | + | chr2_2:34950746-34950765 | Msa0249090:three_prime_UTR | 45.0% | |
| !!! | ACAATTAAATAATAATTTTT+TGG | + | chr2_2:34947433-34947452 | Msa0249090:intron | 5.0% |
| ! | TTACAGGCACACCACCGTTT+TGG | + | chr2_2:34946455-34946474 | Msa0249090:intron | 50.0% |
| GTGTTAACGATTGCGGAAGG+CGG | + | chr2_2:34947099-34947118 | Msa0249090:intron | 50.0% | |
| TGGGAAGGATAGCGACACTA+TGG | - | chr2_2:34947163-34947182 | None:intergenic | 50.0% | |
| GACAACTGTCAGGGCCAATT+TGG | - | chr2_2:34947183-34947202 | None:intergenic | 50.0% | |
| GCGTGTCTGATCTCTATGTC+AGG | + | chr2_2:34947284-34947303 | Msa0249090:intron | 50.0% | |
| TATCATCCCACCCACCCAAA+AGG | - | chr2_2:34947485-34947504 | None:intergenic | 50.0% | |
| CCGGTACAACTAAGGATTCC+TGG | - | chr2_2:34947579-34947598 | None:intergenic | 50.0% | |
| TGCTAGTGCATCCTGAGAGT+TGG | + | chr2_2:34948148-34948167 | Msa0249090:intron | 50.0% | |
| CCTGTAGGGACCATTAGACT+TGG | - | chr2_2:34948269-34948288 | None:intergenic | 50.0% | |
| CCAAGTCTAATGGTCCCTAC+AGG | + | chr2_2:34948266-34948285 | Msa0249090:intron | 50.0% | |
| GACACCGTCACAAGACAAGT+TGG | + | chr2_2:34948419-34948438 | Msa0249090:intron | 50.0% | |
| CATCTTGCCCTTGGAGAACA+TGG | + | chr2_2:34948578-34948597 | Msa0249090:intron | 50.0% | |
| AACCCGGTAGGTAGGAAATG+TGG | + | chr2_2:34948768-34948787 | Msa0249090:intron | 50.0% | |
| CTCCACATTTCCTACCTACC+GGG | - | chr2_2:34948773-34948792 | None:intergenic | 50.0% | |
| !! | GCTGATTTGGAGCTACAAGC+TGG | + | chr2_2:34948794-34948813 | Msa0249090:intron | 50.0% |
| ! | AAGTACACTAGCCTCCTCAG+CGG | + | chr2_2:34948893-34948912 | Msa0249090:intron | 50.0% |
| ! | TTAGTTTGGGTGCAGTGGAG+GGG | - | chr2_2:34949076-34949095 | None:intergenic | 50.0% |
| GCCAGCCTTTGAACACAACA+TGG | - | chr2_2:34949370-34949389 | None:intergenic | 50.0% | |
| GCGCCTTCATTGAAATCTCG+AGG | + | chr2_2:34949467-34949486 | Msa0249090:intron | 50.0% | |
| CTCCAACCGAGTCTCCAAAT+TGG | + | chr2_2:34949646-34949665 | Msa0249090:intron | 50.0% | |
| TTCCATGAGGTTTGGGCCTT+TGG | + | chr2_2:34949711-34949730 | Msa0249090:intron | 50.0% | |
| AACCAAAGGCCCAAACCTCA+TGG | - | chr2_2:34949716-34949735 | None:intergenic | 50.0% | |
| TTAACTGCAGCTGTTGCCTC+CGG | - | chr2_2:34949964-34949983 | None:intergenic | 50.0% | |
| ! | TGTGAAGCATCCTTTGACCG+GGG | - | chr2_2:34950021-34950040 | None:intergenic | 50.0% |
| GCTTGCATAGTGTAGGGACA+TGG | - | chr2_2:34950368-34950387 | None:intergenic | 50.0% | |
| ACGGGTGCTTGCATAGTGTA+GGG | - | chr2_2:34950374-34950393 | None:intergenic | 50.0% | |
| TACGGGTGCTTGCATAGTGT+AGG | - | chr2_2:34950375-34950394 | None:intergenic | 50.0% | |
| CAAGCCTTCCTTCCTAACAG+GGG | + | chr2_2:34950747-34950766 | Msa0249090:three_prime_UTR | 50.0% | |
| CTATCCCCTGTTAGGAAGGA+AGG | - | chr2_2:34950754-34950773 | None:intergenic | 50.0% | |
| CTGTCTATCCCCTGTTAGGA+AGG | - | chr2_2:34950758-34950777 | None:intergenic | 50.0% | |
| AGCACTGTCTATCCCCTGTT+AGG | - | chr2_2:34950762-34950781 | None:intergenic | 50.0% | |
| !! | TTTGGTGGTAGTGGTGGTGG+TGG | + | chr2_2:34946322-34946341 | Msa0249090:CDS | 55.0% |
| !! | GGTGGTGGTGGTAGTAGTAG+TGG | + | chr2_2:34946334-34946353 | Msa0249090:CDS | 55.0% |
| GGGTGAAAAGGGGAATCCTC+TGG | - | chr2_2:34946397-34946416 | None:intergenic | 55.0% | |
| GCACGGACACTCATCGGATT+AGG | + | chr2_2:34946491-34946510 | Msa0249090:intron | 55.0% | |
| CTGTCAGGGCCAATTTGGGA+AGG | - | chr2_2:34947178-34947197 | None:intergenic | 55.0% | |
| TTCTCCGTCGCAATCCACCA+TGG | + | chr2_2:34947209-34947228 | Msa0249090:intron | 55.0% | |
| !! | ATGGCCATGGTGGATTGCGA+CGG | - | chr2_2:34947216-34947235 | None:intergenic | 55.0% |
| CACCGAGTCACCGACATATG+TGG | + | chr2_2:34947312-34947331 | Msa0249090:intron | 55.0% | |
| ! | TGACCCCTCACTCCTCCTTT+TGG | + | chr2_2:34947467-34947486 | Msa0249090:intron | 55.0% |
| ! | GACCCCTCACTCCTCCTTTT+GGG | + | chr2_2:34947468-34947487 | Msa0249090:intron | 55.0% |
| CACCCAAAAGGAGGAGTGAG+GGG | - | chr2_2:34947473-34947492 | None:intergenic | 55.0% | |
| CCACCCAAAAGGAGGAGTGA+GGG | - | chr2_2:34947474-34947493 | None:intergenic | 55.0% | |
| !! | CCTCACTCCTCCTTTTGGGT+GGG | + | chr2_2:34947472-34947491 | Msa0249090:intron | 55.0% |
| !! | ACTCCTCCTTTTGGGTGGGT+GGG | + | chr2_2:34947476-34947495 | Msa0249090:intron | 55.0% |
| TCACCTACTAAGCTCCGCTG+AGG | - | chr2_2:34948910-34948929 | None:intergenic | 55.0% | |
| GACCTATGGCCTTCCAACCT+TGG | + | chr2_2:34949170-34949189 | Msa0249090:intron | 55.0% | |
| CTCCAAGGTTGGAAGGCCAT+AGG | - | chr2_2:34949175-34949194 | None:intergenic | 55.0% | |
| CAGTCGATGGTGTGCCATAC+TGG | - | chr2_2:34950529-34950548 | None:intergenic | 55.0% | |
| ! | CCCTCACTCCTCCTTTTGGG+TGG | + | chr2_2:34947471-34947490 | Msa0249090:intron | 60.0% |
| CCCACCCAAAAGGAGGAGTG+AGG | - | chr2_2:34947475-34947494 | None:intergenic | 60.0% | |
| !! | CACTCCTCCTTTTGGGTGGG+TGG | + | chr2_2:34947475-34947494 | Msa0249090:intron | 60.0% |
| CATCCCACCCACCCAAAAGG+AGG | - | chr2_2:34947482-34947501 | None:intergenic | 60.0% | |
| CCTACTAAGCTCCGCTGAGG+AGG | - | chr2_2:34948907-34948926 | None:intergenic | 60.0% | |
| CCTCCTCAGCGGAGCTTAGT+AGG | + | chr2_2:34948904-34948923 | Msa0249090:intron | 60.0% | |
| CTTGGGTGTGTACGATCCGG+AGG | + | chr2_2:34949945-34949964 | Msa0249090:CDS | 60.0% | |
| !! | GTCGTGACGGTGTCGCACAC+AGG | - | chr2_2:34946523-34946542 | None:intergenic | 65.0% |
| GTTTGGGTGCAGTGGAGGGG+AGG | - | chr2_2:34949073-34949092 | None:intergenic | 65.0% | |
| ! | GGAGACTCGGTTGGAGCTCG+AGG | - | chr2_2:34949642-34949661 | None:intergenic | 65.0% |
| GTGCAGTGGAGGGGAGGAGG+TGG | - | chr2_2:34949067-34949086 | None:intergenic | 70.0% | |
| TGGGTGCAGTGGAGGGGAGG+AGG | - | chr2_2:34949070-34949089 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 34946011 | 34951079 | 34946011 | ID=Msa0249090;Name=Msa0249090 |
| chr2_2 | mRNA | 34946011 | 34951079 | 34946011 | ID=Msa0249090-mRNA-1;Parent=Msa0249090;Name=Msa0249090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=111|1|1|1|1|1|8|425|298 |
| chr2_2 | exon | 34946011 | 34946200 | 34946011 | ID=Msa0249090-mRNA-1:exon:11414;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34946314 | 34946417 | 34946314 | ID=Msa0249090-mRNA-1:exon:11415;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34947568 | 34947771 | 34947568 | ID=Msa0249090-mRNA-1:exon:11416;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34947909 | 34947980 | 34947909 | ID=Msa0249090-mRNA-1:exon:11417;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34949928 | 34950043 | 34949928 | ID=Msa0249090-mRNA-1:exon:11418;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34950145 | 34950211 | 34950145 | ID=Msa0249090-mRNA-1:exon:11419;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34950285 | 34950391 | 34950285 | ID=Msa0249090-mRNA-1:exon:11420;Parent=Msa0249090-mRNA-1 |
| chr2_2 | exon | 34950507 | 34951079 | 34950507 | ID=Msa0249090-mRNA-1:exon:11421;Parent=Msa0249090-mRNA-1 |
| chr2_2 | five_prime_UTR | 34946011 | 34946121 | 34946011 | ID=Msa0249090-mRNA-1:five_prime_utr;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34946122 | 34946200 | 34946122 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34946314 | 34946417 | 34946314 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34947568 | 34947771 | 34947568 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34947909 | 34947980 | 34947909 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34949928 | 34950043 | 34949928 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34950145 | 34950211 | 34950145 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34950285 | 34950391 | 34950285 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | CDS | 34950507 | 34950654 | 34950507 | ID=Msa0249090-mRNA-1:cds;Parent=Msa0249090-mRNA-1 |
| chr2_2 | three_prime_UTR | 34950655 | 34951079 | 34950655 | ID=Msa0249090-mRNA-1:three_prime_utr;Parent=Msa0249090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
