AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100160 MtrunA17_Chr1g0149971 91.992 949 31 7 1 915 1 938 0.0 1605
Msa0100160 MtrunA17_Chr3g0137011 44.005 884 320 13 1 855 1 738 0.0 598
Msa0100160 MtrunA17_Chr4g0001301 47.111 225 119 0 43 267 46 270 2.39e-66 238
Msa0100160 MtrunA17_Chr4g0001301 54.098 61 28 0 623 683 761 821 4.00e-17 86.7
Msa0100160 MtrunA17_Chr2g0290621 46.977 215 114 0 16 230 13 227 6.79e-55 207
Msa0100160 MtrunA17_Chr2g0290621 37.615 109 65 1 572 677 1312 1420 1.49e-14 78.6
Msa0100160 MtrunA17_Chr4g0076411 45.116 215 118 0 23 237 29 243 1.16e-51 197
Msa0100160 MtrunA17_Chr4g0076411 42.857 77 40 2 604 677 1353 1428 1.43e-14 78.6
Msa0100160 MtrunA17_Chr1g0164141 38.596 171 105 0 53 223 61 231 5.13e-34 141
Msa0100160 MtrunA17_Chr4g0013631 47.059 102 54 0 24 125 33 134 2.05e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100160 AT4G31880.1 42.875 800 354 21 1 759 1 738 1.11e-163 501
Msa0100160 AT4G31880.2 42.516 795 363 19 1 759 1 737 8.61e-163 498
Msa0100160 AT1G80810.5 51.012 247 121 0 7 253 9 255 3.53e-76 263
Msa0100160 AT1G80810.3 51.012 247 121 0 7 253 9 255 9.36e-76 265
Msa0100160 AT1G15940.1 50.584 257 126 1 9 264 13 269 2.34e-75 267
Msa0100160 AT1G80810.4 52.217 203 97 0 51 253 1 203 2.84e-64 231
Msa0100160 AT1G80810.2 52.217 203 97 0 51 253 1 203 2.84e-64 231
Msa0100160 AT1G80810.1 52.217 203 97 0 51 253 1 203 2.88e-64 231
Msa0100160 AT5G47690.1 49.115 226 115 0 9 234 6 231 3.37e-54 206
Msa0100160 AT5G47690.1 45.455 77 38 2 604 677 1345 1420 1.45e-14 79.0
Msa0100160 AT5G47690.3 49.115 226 115 0 9 234 6 231 3.37e-54 206
Msa0100160 AT5G47690.3 45.455 77 38 2 604 677 1346 1421 1.44e-14 79.0
Msa0100160 AT5G47690.2 49.115 226 115 0 9 234 6 231 3.40e-54 206
Msa0100160 AT5G47690.2 45.455 77 38 2 604 677 1346 1421 1.44e-14 79.0
Msa0100160 AT5G47690.4 48.507 134 69 0 101 234 1 134 4.16e-28 123
Msa0100160 AT5G47690.4 45.455 77 38 2 604 677 1249 1324 1.72e-14 79.0
Msa0100160 AT1G77600.1 33.190 232 122 5 27 228 25 253 1.54e-27 121
Msa0100160 AT1G77600.2 33.190 232 122 5 27 228 25 253 1.76e-27 120
Msa0100160 AT1G77600.3 33.190 232 122 5 27 228 25 253 2.74e-27 120
Msa0100160 AT5G10950.1 31.034 319 175 7 607 881 20 337 2.39e-18 89.0
Msa0100160 AT4G32970.1 46.154 78 40 1 580 655 239 316 2.33e-12 71.2

Find 168 sgRNAs with CRISPR-Local

Find 635 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTGGATTTCTTTGTTT+TGG 0.135848 1_3:+6688673 None:intergenic
ATTCACAGCTTGCAATAAAT+TGG 0.137673 1_3:+6693336 None:intergenic
TGAATGCGATGCCCTCATTT+TGG 0.211745 1_3:-6694389 Msa0100160:CDS
CTCCTCTGAATGTTCATCTT+TGG 0.212857 1_3:+6691846 None:intergenic
TGCCAACAATCTTGGACTTT+TGG 0.217412 1_3:+6688900 None:intergenic
GAATACCTTGGGTATTTCTT+TGG 0.248145 1_3:-6693317 Msa0100160:CDS
TGTTTCAACATCATCATCTT+TGG 0.263549 1_3:+6688658 None:intergenic
TTTGGAACCATCAGTCTTCT+TGG 0.272724 1_3:+6688691 None:intergenic
ATGGTACTTCTTTCCAGCTT+TGG 0.280257 1_3:+6692719 None:intergenic
CTATCCTCATTAAGAGAAAT+AGG 0.285148 1_3:+6692449 None:intergenic
GACTTGGCAGCAGCAGGCTT+TGG 0.294881 1_3:+6688635 None:intergenic
ACAACATTTGATTTCTTAGA+AGG 0.300643 1_3:+6692527 None:intergenic
CGGGTACTTCTTTCCAGCTT+TGG 0.307849 1_3:+6692590 None:intergenic
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_3:-6692662 Msa0100160:intron
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_3:-6692791 Msa0100160:intron
CGGTACCATCTTGATTCTTA+AGG 0.317971 1_3:+6692828 None:intergenic
TAAAGAAGGAATCTTCTAAA+AGG 0.321959 1_3:-6689045 Msa0100160:intron
ATCAGATTTGCCAACAATCT+TGG 0.333369 1_3:+6688892 None:intergenic
AGCATTTCTTGAAGACAATA+AGG 0.335459 1_3:-6694357 Msa0100160:intron
CTTCCGGCCTTTGAAGAACT+TGG 0.341166 1_3:+6688428 None:intergenic
TTCCTCTTCAGAGTTGTCTT+AGG 0.352079 1_3:+6691820 None:intergenic
TACATATCAGCAGAAGGTTC+AGG 0.356045 1_3:+6689641 None:intergenic
TTGCCAATTGCTCGAAAGTT+GGG 0.356161 1_3:-6693397 Msa0100160:CDS
GAGCTTGAAGAGGAGCTTCT+TGG 0.361460 1_3:-6697696 Msa0100160:CDS
TCCACTCTTGACCTCGCTTC+CGG 0.362848 1_3:+6688412 None:intergenic
ATTTGATTTCTTAGAAGGTT+TGG 0.364123 1_3:+6692532 None:intergenic
AATCTTAGGTGTTCCTTGCT+TGG 0.371699 1_3:+6688583 None:intergenic
TAATGATGAGCGCGATGATA+TGG 0.372310 1_3:-6692639 Msa0100160:CDS
TAATGATGAGCGCGATGATA+TGG 0.372310 1_3:-6692768 Msa0100160:CDS
GCCTTGTTGCACAACTTTCA+AGG 0.376202 1_3:+6693365 None:intergenic
TGCTTAGACTTGGCAGCAGC+AGG 0.379630 1_3:+6688629 None:intergenic
GCAATTAATGCTTTCAATGA+TGG 0.382142 1_3:+6694753 None:intergenic
GTGATTGTTCAATCCTTGAT+AGG 0.382822 1_3:+6694805 None:intergenic
CATCGTGATTGCTCTCACTT+GGG 0.384010 1_3:+6692321 None:intergenic
TTTGTCATTCTCTGAAGTTC+CGG 0.387929 1_3:+6692412 None:intergenic
AATCACCTTGTGCTTCTTAG+TGG 0.388686 1_3:+6690517 None:intergenic
TAGCTTTCTTTCCTTTCCTC+CGG 0.389525 1_3:+6692570 None:intergenic
GGAGAGAAACCCACCACATC+TGG 0.391831 1_3:+6689754 None:intergenic
TTGGAGGAAGATGCAATCTT+AGG 0.392697 1_3:+6688569 None:intergenic
AGTACCATCTTGCTTCTTGA+TGG 0.393944 1_3:+6692700 None:intergenic
GGTACCATCTTGATTCTTAA+GGG 0.402411 1_3:+6692829 None:intergenic
TTCACAGCTTGCAATAAATT+GGG 0.404010 1_3:+6693337 None:intergenic
CAGAGTTTCTTGCTTAGACT+TGG 0.418244 1_3:+6688619 None:intergenic
CACCTTGGCAGTACTCTTGG+TGG 0.430285 1_3:+6688538 None:intergenic
TTGCAAGCTGTGAATACCTT+GGG 0.433319 1_3:-6693328 Msa0100160:CDS
AACAATGGCTTCCATCGATA+AGG 0.435483 1_3:-6697718 Msa0100160:exon
TCCTCCGGCTTCAGCGAAGA+TGG 0.435935 1_3:+6692098 None:intergenic
TTTACTTACATATTATCATC+TGG 0.436684 1_3:+6691481 None:intergenic
TTTCACCTTGGCAGTACTCT+TGG 0.440852 1_3:+6688535 None:intergenic
TCATCGTGATTGCTCTCACT+TGG 0.445993 1_3:+6692320 None:intergenic
TTGGAAAACGAGTGAAAGTT+TGG 0.452118 1_3:-6691507 Msa0100160:CDS
CTGAAGAGGAAGCGCACTCC+AGG 0.456469 1_3:-6691808 Msa0100160:CDS
TTGAAACAGTTGCAAAAGTC+AGG 0.456577 1_3:-6694435 Msa0100160:CDS
TGTGAAAGGTAGCTCAGAAA+AGG 0.460714 1_3:-6692057 Msa0100160:CDS
TTCTGCTGAAGATGAGGATA+AGG 0.461842 1_3:-6692021 Msa0100160:intron
CCATCATCGTAAGGAGCATC+AGG 0.463270 1_3:+6694648 None:intergenic
TTTGCCAATTGCTCGAAAGT+TGG 0.463830 1_3:-6693398 Msa0100160:CDS
TGATGTCTCTTTGCATATTG+AGG 0.470487 1_3:+6693273 None:intergenic
CAAAGAGACATCAGATAACT+TGG 0.472652 1_3:-6693263 Msa0100160:CDS
AGTTCCTATTTCTCTTAATG+AGG 0.475927 1_3:-6692453 Msa0100160:CDS
CTCTGATGATTCATCAAAAG+AGG 0.477468 1_3:-6688474 Msa0100160:CDS
GAAGAGGAGCTTCTTGGTGC+TGG 0.481281 1_3:-6697690 Msa0100160:CDS
TCTTGTTATCTCACTGAAGC+AGG 0.484650 1_3:+6694680 None:intergenic
AAGCAAGAAACTCTGAAAAG+TGG 0.486444 1_3:-6688611 Msa0100160:CDS
GGGCGCTCCATAGTGAAAAT+CGG 0.486737 1_3:+6697911 None:intergenic
ACCTGTGCCGACTCCTCCAC+GGG 0.491104 1_3:+6693084 None:intergenic
AAATTGAAAGCTGCCTATCA+AGG 0.491263 1_3:-6694818 Msa0100160:CDS
AGCTTTCTTTCCTTTCCTCC+GGG 0.491606 1_3:+6692571 None:intergenic
GGTGAAATTTAATTTGCTGC+AGG 0.492693 1_3:-6688519 Msa0100160:CDS
CCTGATGCTCCTTACGATGA+TGG 0.494019 1_3:-6694648 Msa0100160:CDS
ATTGCAAGCTGTGAATACCT+TGG 0.495747 1_3:-6693329 Msa0100160:CDS
TGGGCCATCTTCGCTGAAGC+CGG 0.496223 1_3:-6692102 Msa0100160:CDS
CCAGCAGCATTATCTTGTTG+TGG 0.496436 1_3:+6692929 None:intergenic
AGAAGAGCCCGTGGAGGAGT+CGG 0.498375 1_3:-6693091 Msa0100160:CDS
CGACAGTAAAGAACCAAAGC+TGG 0.500112 1_3:-6692603 Msa0100160:CDS
AACCAACAGCGTCAGATTCA+AGG 0.503072 1_3:+6692351 None:intergenic
ACCCAAAAGTCCAAGATTGT+TGG 0.505723 1_3:-6688902 Msa0100160:CDS
GAGGATCATTATAGTTTCCA+TGG 0.512597 1_3:+6693615 None:intergenic
GCCCGTGGAGGAGTCGGCAC+AGG 0.512947 1_3:-6693085 Msa0100160:intron
CACCTGTGCCGACTCCTCCA+CGG 0.513149 1_3:+6693083 None:intergenic
CAGGTCATGTGTGGTAATGC+TGG 0.515493 1_3:-6694416 Msa0100160:CDS
GCCATTGCTCATGACAGACT+TGG 0.517547 1_3:+6692895 None:intergenic
ACGCAGTTATGGCTGATGTT+GGG 0.519304 1_3:-6692121 Msa0100160:CDS
AAGTCCTCTTTGAGTACCAT+CGG 0.520932 1_3:+6694464 None:intergenic
AAGAAAGGGAAAACAAATGC+TGG 0.523409 1_3:-6689085 Msa0100160:CDS
ACATATCAGCAGAAGGTTCA+GGG 0.523521 1_3:+6689642 None:intergenic
TCTAGATCCTCCTTCTTCTG+TGG 0.525291 1_3:-6697658 Msa0100160:CDS
GCTGAAACATCTCCAAAATG+AGG 0.525907 1_3:+6694377 None:intergenic
TTCACATCAGAGCTACGAAT+GGG 0.526166 1_3:+6692155 None:intergenic
AGCAGATTATCCACAGAAGA+AGG 0.527883 1_3:+6697648 None:intergenic
AACTGTTGTACACGCAGTTA+TGG 0.529876 1_3:-6692132 Msa0100160:CDS
ATGTGCTACTAGTGGTCATA+TGG 0.534849 1_3:-6693227 Msa0100160:intron
CACGCAGTTATGGCTGATGT+TGG 0.537789 1_3:-6692122 Msa0100160:CDS
CCACAACAAGATAATGCTGC+TGG 0.541512 1_3:-6692929 Msa0100160:CDS
TGCCAATTGCTCGAAAGTTG+GGG 0.542777 1_3:-6693396 Msa0100160:CDS
TTCATTTGACCATCATCGTA+AGG 0.547264 1_3:+6694639 None:intergenic
CGACAGTGAAGATCCAAAGC+TGG 0.547329 1_3:-6692732 Msa0100160:CDS
GTGAAAGGTAGCTCAGAAAA+GGG 0.548617 1_3:-6692056 Msa0100160:CDS
CACCTTGTGCTTCTTAGTGG+AGG 0.548995 1_3:+6690520 None:intergenic
CTCCTAAGACAACTCTGAAG+AGG 0.549547 1_3:-6691822 Msa0100160:CDS
CTCTTCAAGCTCCTTATCGA+TGG 0.549642 1_3:+6697707 None:intergenic
GGCCTTGAATCTGACGCTGT+TGG 0.550492 1_3:-6692353 Msa0100160:CDS
AAGATTTCATCATCTAAAGC+AGG 0.558832 1_3:-6692377 Msa0100160:CDS
GGAAATATTGAATTTCAAAG+AGG 0.559321 1_3:-6689809 Msa0100160:CDS
TAAGACACCAAGTTCTTCAA+AGG 0.563438 1_3:-6688435 Msa0100160:CDS
TAGTGAAAATCGGATCTCGC+GGG 0.565397 1_3:+6697921 None:intergenic
ACACCAAGTTCTTCAAAGGC+CGG 0.566066 1_3:-6688431 Msa0100160:CDS
ATTATCTTGTTGTGGTGGTG+TGG 0.567813 1_3:+6692937 None:intergenic
AACAATTCCAAGAAGACTGA+TGG 0.567967 1_3:-6688698 Msa0100160:CDS
ATCAAATGTTGTCAGTGAGA+AGG 0.568468 1_3:-6692516 Msa0100160:CDS
CTTCACTTTCTTCAAGACAG+AGG 0.568574 1_3:+6693596 None:intergenic
AGCAATGGCATTGCACAGGC+TGG 0.569751 1_3:-6692881 Msa0100160:CDS
AAAATCTTCTGCTGAAGATG+AGG 0.574455 1_3:-6692027 Msa0100160:CDS
TTACGATGATGGTCAAATGA+AGG 0.575678 1_3:-6694637 Msa0100160:intron
CAGCAAATTAAATTTCACCT+TGG 0.579090 1_3:+6688523 None:intergenic
AGTACCATCAAGAAGCAAGA+TGG 0.582257 1_3:-6692704 Msa0100160:intron
CCCAAGTCTGTCATGAGCAA+TGG 0.584267 1_3:-6692896 Msa0100160:CDS
TTCTTCAAAGGCCGGAAGCG+AGG 0.584421 1_3:-6688423 Msa0100160:CDS
CCATTGCTCATGACAGACTT+GGG 0.584993 1_3:+6692896 None:intergenic
GAAAGAAGTACCCGGAGGAA+AGG 0.586795 1_3:-6692581 Msa0100160:CDS
GAGGATCGATCTGTGAAAAG+TGG 0.587517 1_3:-6688749 Msa0100160:CDS
CTGAAACATCTCCAAAATGA+GGG 0.589075 1_3:+6694378 None:intergenic
AAGTCCCTTAAGAATCAAGA+TGG 0.589469 1_3:-6692833 Msa0100160:intron
TCCTTGAAAGTTGTGCAACA+AGG 0.590316 1_3:-6693366 Msa0100160:CDS
TGATTGCTCTCACTTGGGGA+AGG 0.597535 1_3:+6692326 None:intergenic
AACCAAAGATGAACATTCAG+AGG 0.606229 1_3:-6691848 Msa0100160:CDS
GAAAACGAGTGAAAGTTTGG+TGG 0.606844 1_3:-6691504 Msa0100160:CDS
ATCGTGATTGCTCTCACTTG+GGG 0.607109 1_3:+6692322 None:intergenic
GCAGCATTATCTTGTTGTGG+TGG 0.611398 1_3:+6692932 None:intergenic
AAAAGTGGAAAATCCAAGCA+AGG 0.613072 1_3:-6688596 Msa0100160:CDS
GCCGGAAGCGAGGTCAAGAG+TGG 0.613992 1_3:-6688413 Msa0100160:CDS
CATGAGCAATGGCATTGCAC+AGG 0.614805 1_3:-6692885 Msa0100160:CDS
GCATTTAGCATAGATTCAGA+AGG 0.618101 1_3:+6694783 None:intergenic
AAAAGAGGTTGAAGTCGCAA+AGG 0.618191 1_3:-6688459 Msa0100160:CDS
GCCATCTTCGCTGAAGCCGG+AGG 0.620004 1_3:-6692099 Msa0100160:CDS
AAGAACGAAGGTTTCAACAA+TGG 0.620142 1_3:-6697733 Msa0100160:exon
TTTCACATCAGAGCTACGAA+TGG 0.622443 1_3:+6692154 None:intergenic
CATCGATAAGGAGCTTGAAG+AGG 0.623073 1_3:-6697706 Msa0100160:CDS
AAGATTGTTGGCAAATCTGA+TGG 0.623981 1_3:-6688890 Msa0100160:CDS
ACAAGATCTGCGAAGAACGA+AGG 0.625096 1_3:-6697745 Msa0100160:five_prime_UTR
CAAAGCTGGAAAGAAGTACC+CGG 0.625149 1_3:-6692589 Msa0100160:CDS
AGTAAAACCAGCAAGGCCAT+CGG 0.625363 1_3:-6692189 Msa0100160:CDS
CTTATATGATGACGGTGACG+AGG 0.627894 1_3:-6689830 Msa0100160:CDS
CAAGCCGATGGTACTCAAAG+AGG 0.634997 1_3:-6694468 Msa0100160:CDS
TGCAAAAGTCAGGTCATGTG+TGG 0.635420 1_3:-6694425 Msa0100160:CDS
ATCCACCAAGAGTACTGCCA+AGG 0.638641 1_3:-6688540 Msa0100160:CDS
AAAGGTGTCTGAAGGAACAT+CGG 0.639404 1_3:-6692219 Msa0100160:intron
ATAGTGAAAATCGGATCTCG+CGG 0.641183 1_3:+6697920 None:intergenic
TGTTATCTCACTGAAGCAGG+AGG 0.643833 1_3:+6694683 None:intergenic
GAGGATCGTTCTGTGAAAAG+TGG 0.649043 1_3:-6688782 Msa0100160:CDS
ATTTCATCATCTAAAGCAGG+TGG 0.650486 1_3:-6692374 Msa0100160:CDS
GATCGTTCTGTGAAAAGCGG+TGG 0.650745 1_3:-6688812 Msa0100160:CDS
ATCATCCAAAGAAATACCCA+AGG 0.651603 1_3:+6693312 None:intergenic
ATTCTAAAGTAAAACCAGCA+AGG 0.653307 1_3:-6692196 Msa0100160:CDS
GAAAAGCGGTGGTAAATCTG+AGG 0.653841 1_3:-6688801 Msa0100160:CDS
GCCAATTGCTCGAAAGTTGG+GGG 0.654279 1_3:-6693395 Msa0100160:CDS
GGAACATACATATCAGCAGA+AGG 0.655262 1_3:+6689635 None:intergenic
CAAATCAGCAGAAGAGCCCG+TGG 0.658039 1_3:-6693100 Msa0100160:CDS
ATCAGCAGAAGAGCCCGTGG+AGG 0.658419 1_3:-6693097 Msa0100160:CDS
GAGGATCGTTCTGTGAAAAG+CGG 0.667811 1_3:-6688815 Msa0100160:CDS
AGATTATCCACAGAAGAAGG+AGG 0.674208 1_3:+6697651 None:intergenic
TACATGATAAGTCAAGCCGA+TGG 0.690536 1_3:-6694480 Msa0100160:CDS
AATGATGTATGTGCTACTAG+TGG 0.697284 1_3:-6693235 Msa0100160:CDS
GATCGTTCTGTGAAAAGTGG+TGG 0.707911 1_3:-6688779 Msa0100160:CDS
GAAAAGTGGTGGTAAGTCTG+AGG 0.717018 1_3:-6688768 Msa0100160:CDS
AGTTGATGCTGATCCAGATG+TGG 0.718308 1_3:-6689767 Msa0100160:intron
TTCCTCCACTAAGAAGCACA+AGG 0.719970 1_3:-6690522 Msa0100160:intron
AGCTGGAAAGAAGTACCCGG+AGG 0.747453 1_3:-6692586 Msa0100160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTATTTTATTATA+TGG + chr1_3:6688435-6688454 None:intergenic 0.0%
!! AATATAAAATATTAAATAAT+TGG - chr1_3:6689679-6689698 Msa0100160:intron 0.0%
!! ATATAAAATATTAAATAATT+GGG - chr1_3:6689680-6689699 Msa0100160:intron 0.0%
!!! TTCATTTTAATAAAAAAGAT+AGG - chr1_3:6690634-6690653 Msa0100160:intron 10.0%
!! TATTAATTAATTTCAAATCA+TGG - chr1_3:6691378-6691397 Msa0100160:intron 10.0%
!!! CTTATTATTTATTTTGTTTT+TGG - chr1_3:6693170-6693189 Msa0100160:intron 10.0%
!! CTTATAATTTATATTTACAA+GGG - chr1_3:6696216-6696235 Msa0100160:intron 10.0%
!!! AAACATTTTTCAAATTAAAT+AGG - chr1_3:6696355-6696374 Msa0100160:intron 10.0%
!!! TTGTTTTTATGATTATATTT+AGG - chr1_3:6697192-6697211 Msa0100160:intron 10.0%
!!! ATTATATGGTTTTTTCATTT+GGG + chr1_3:6688421-6688440 None:intergenic 15.0%
!!! TATTATATGGTTTTTTCATT+TGG + chr1_3:6688422-6688441 None:intergenic 15.0%
!!! ATCTATGTTTTTATATCAAA+GGG + chr1_3:6688477-6688496 None:intergenic 15.0%
!!! TATCTATGTTTTTATATCAA+AGG + chr1_3:6688478-6688497 None:intergenic 15.0%
!!! GGAAATTTGAAAATAATTTT+TGG - chr1_3:6688949-6688968 Msa0100160:CDS 15.0%
!!! GATGATTTTTTAAAGTTTAT+TGG - chr1_3:6689001-6689020 Msa0100160:intron 15.0%
!!! TTAAAGTTTATTGGATTTTT+AGG - chr1_3:6689010-6689029 Msa0100160:intron 15.0%
!! AAAATATTAAATAATTGGGT+TGG - chr1_3:6689684-6689703 Msa0100160:intron 15.0%
!! AAATATTAAATAATTGGGTT+GGG - chr1_3:6689685-6689704 Msa0100160:intron 15.0%
!! TTCCATATAAATAGATAATT+CGG + chr1_3:6689816-6689835 None:intergenic 15.0%
!! TTAAAATGAAATGAAATTAC+AGG + chr1_3:6690624-6690643 None:intergenic 15.0%
!! ATCTATGTAATATTAATATG+TGG + chr1_3:6690727-6690746 None:intergenic 15.0%
!!! TGTTAATTGTAAATTTGTTT+TGG - chr1_3:6691109-6691128 Msa0100160:intron 15.0%
!!! GTTAATTGTAAATTTGTTTT+GGG - chr1_3:6691110-6691129 Msa0100160:intron 15.0%
!!! TTAATTGTAAATTTGTTTTG+GGG - chr1_3:6691111-6691130 Msa0100160:intron 15.0%
!!! TATATCATTTTTTTTCTTCT+TGG - chr1_3:6691459-6691478 Msa0100160:intron 15.0%
!!! GATATCTTAATTTTAATACT+TGG + chr1_3:6692294-6692313 None:intergenic 15.0%
!! AAACGAAAAATAAAACATAT+AGG + chr1_3:6693263-6693282 None:intergenic 15.0%
!!! AATTTTAAATTAACAGAACA+GGG + chr1_3:6694544-6694563 None:intergenic 15.0%
!!! AAATTTTAAATTAACAGAAC+AGG + chr1_3:6694545-6694564 None:intergenic 15.0%
!!! TGTTCTGTTAATTTAAAATT+TGG - chr1_3:6694544-6694563 Msa0100160:intron 15.0%
!!! AAAGTTTTACTGAAATAAAT+TGG + chr1_3:6695858-6695877 None:intergenic 15.0%
!!! ATTTTTTTTCAATTTTTCCT+TGG - chr1_3:6696109-6696128 Msa0100160:intron 15.0%
!! GCTTATAATTTATATTTACA+AGG - chr1_3:6696215-6696234 Msa0100160:intron 15.0%
!! TGTATTATCAATAAGAATAA+AGG + chr1_3:6696277-6696296 None:intergenic 15.0%
!!! TATTCTTATTGATAATACAA+AGG - chr1_3:6696278-6696297 Msa0100160:intron 15.0%
!!! TTTTATATCAAAGGGTTATT+GGG + chr1_3:6688469-6688488 None:intergenic 20.0%
!!! TTTTTATATCAAAGGGTTAT+TGG + chr1_3:6688470-6688489 None:intergenic 20.0%
!!! AACACTGTTAAGTATTTTTT+AGG - chr1_3:6688923-6688942 Msa0100160:CDS 20.0%
!!! ACACTGTTAAGTATTTTTTA+GGG - chr1_3:6688924-6688943 Msa0100160:CDS 20.0%
!!! ATTTTTTCAGTTTTGAGATT+TGG - chr1_3:6689085-6689104 Msa0100160:CDS 20.0%
!! TTAAACTAAGAATTAACGAT+TGG - chr1_3:6689279-6689298 Msa0100160:intron 20.0%
!! CAAAAATAACTCATTTAAAC+AGG + chr1_3:6689731-6689750 None:intergenic 20.0%
!!! TTCAAGTACTGTAAAATTTT+AGG - chr1_3:6689759-6689778 Msa0100160:intron 20.0%
!! ATAAATAGATAATTCGGTTT+CGG + chr1_3:6689810-6689829 None:intergenic 20.0%
!! AACCGAATTATCTATTTATA+TGG - chr1_3:6689811-6689830 Msa0100160:CDS 20.0%
!!! TATTGATTAACGAATATACT+TGG + chr1_3:6689849-6689868 None:intergenic 20.0%
!! AAGTATATTCGTTAATCAAT+AGG - chr1_3:6689848-6689867 Msa0100160:intron 20.0%
!! AAAACCAAGTTCATTAAAAT+AGG - chr1_3:6690566-6690585 Msa0100160:intron 20.0%
!! AAATTATATGCCTAATAGAT+GGG + chr1_3:6690601-6690620 None:intergenic 20.0%
!! TTCACAAACAATTTAATGAA+TGG + chr1_3:6690986-6691005 None:intergenic 20.0%
!! AATTTACAATTAACAACTCA+GGG + chr1_3:6691104-6691123 None:intergenic 20.0%
!! AAATTTACAATTAACAACTC+AGG + chr1_3:6691105-6691124 None:intergenic 20.0%
!!! TAATTGTAAATTTGTTTTGG+GGG - chr1_3:6691112-6691131 Msa0100160:intron 20.0%
!! CATTAAAATTCAGAACTAAA+TGG + chr1_3:6692252-6692271 None:intergenic 20.0%
!!! CATTTAGTTCTGAATTTTAA+TGG - chr1_3:6692250-6692269 Msa0100160:intron 20.0%
!!! TTTTTTACACTATCTAAGAT+TGG + chr1_3:6692762-6692781 None:intergenic 20.0%
!! TGAATTTCTTATAATTGTCA+TGG - chr1_3:6692863-6692882 Msa0100160:CDS 20.0%
!! AATGTTCATGTATATTTGAT+TGG - chr1_3:6693121-6693140 Msa0100160:intron 20.0%
!! AACATTAGTAAAGAAATGTT+AGG + chr1_3:6694333-6694352 None:intergenic 20.0%
!! ACAAAAAAAATATACCATGT+TGG + chr1_3:6694367-6694386 None:intergenic 20.0%
!!! ATTAGTCAATGACTTAATTT+TGG + chr1_3:6694390-6694409 None:intergenic 20.0%
!! TTTACTTACATATTATCATC+TGG + chr1_3:6694831-6694850 None:intergenic 20.0%
!! GATGATAATATGTAAGTAAA+TGG - chr1_3:6694831-6694850 Msa0100160:intron 20.0%
!! TAATGATAAATATAGTTGTG+TGG - chr1_3:6695304-6695323 Msa0100160:intron 20.0%
!! CACAGTTATTTAATATAACA+TGG + chr1_3:6695521-6695540 None:intergenic 20.0%
!!! TTTTACTGAAATAAATTGGA+AGG + chr1_3:6695854-6695873 None:intergenic 20.0%
!! ATTGTTTAGAAAACAGAAAA+CGG - chr1_3:6696192-6696211 Msa0100160:intron 20.0%
!!! TTTTAACATGTGAAATTGAA+GGG + chr1_3:6696579-6696598 None:intergenic 20.0%
!! TGCAATTATTATTATAGACA+TGG + chr1_3:6696608-6696627 None:intergenic 20.0%
!! TCTTAAGTAAACAAAAACAA+CGG + chr1_3:6696698-6696717 None:intergenic 20.0%
!! GATGCAAAATAATTTAAAGA+TGG + chr1_3:6696749-6696768 None:intergenic 20.0%
!!! TTATTTTTCAATTCAACACA+AGG + chr1_3:6696983-6697002 None:intergenic 20.0%
!! AATCATAAAAACAAGTGAAT+GGG + chr1_3:6697186-6697205 None:intergenic 20.0%
!! TAATCATAAAAACAAGTGAA+TGG + chr1_3:6697187-6697206 None:intergenic 20.0%
!! TGAAGTTAGTAAAAAATCTA+AGG - chr1_3:6697442-6697461 Msa0100160:intron 20.0%
!!! TGTTAAGTATTTTTTAGGGT+TGG - chr1_3:6688928-6688947 Msa0100160:CDS 25.0%
! AATTAACGATTGGAAACTAA+CGG - chr1_3:6689289-6689308 Msa0100160:intron 25.0%
! TCTATTTATATGGAAAAACG+TGG - chr1_3:6689821-6689840 Msa0100160:CDS 25.0%
! AATTAGTTGCTTCACATAAA+AGG - chr1_3:6689958-6689977 Msa0100160:intron 25.0%
!!! ATTGGGATTCATTTTGATTT+TGG - chr1_3:6690471-6690490 Msa0100160:intron 25.0%
! GAAATTATATGCCTAATAGA+TGG + chr1_3:6690602-6690621 None:intergenic 25.0%
! GTAAAAAACCTTTCAAATAG+TGG + chr1_3:6691253-6691272 None:intergenic 25.0%
! AGCACATGTAATTAATGTTT+CGG + chr1_3:6691436-6691455 None:intergenic 25.0%
!!! TTATGTTGTCATTTTCTTTC+AGG - chr1_3:6691770-6691789 Msa0100160:intron 25.0%
! AAAGTCAGAATTGTATACAA+CGG + chr1_3:6691991-6692010 None:intergenic 25.0%
! TAAACAGAGTTTATAAAGCT+TGG + chr1_3:6692100-6692119 None:intergenic 25.0%
!! AAGCTTTATAAACTCTGTTT+AGG - chr1_3:6692099-6692118 Msa0100160:CDS 25.0%
!!! GAAATTTGCTTTTGACTAAA+TGG - chr1_3:6692213-6692232 Msa0100160:CDS 25.0%
! TTAATGGCTGATATCATTAT+TGG - chr1_3:6692266-6692285 Msa0100160:CDS 25.0%
!! TTTTGATGTATAACTGGATA+TGG - chr1_3:6692344-6692363 Msa0100160:CDS 25.0%
! TTTGATGTATAACTGGATAT+GGG - chr1_3:6692345-6692364 Msa0100160:CDS 25.0%
! TGGAAAATATAAGATGAAAC+AGG - chr1_3:6692405-6692424 Msa0100160:CDS 25.0%
! TAGTGTAAAAAAAGACAATG+AGG - chr1_3:6692770-6692789 Msa0100160:CDS 25.0%
! TTCGTTTCATTCTTGTTAAT+AGG - chr1_3:6692808-6692827 Msa0100160:intron 25.0%
! TATACATGAACATTAAAGCA+CGG + chr1_3:6693115-6693134 None:intergenic 25.0%
!!! ATTTATTTTGTTTTTGGTCC+AGG - chr1_3:6693176-6693195 Msa0100160:intron 25.0%
!! CATGTCAATTTTTCTTGATT+AGG - chr1_3:6693325-6693344 Msa0100160:CDS 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_3:6693518-6693537 Msa0100160:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_3:6693522-6693541 None:intergenic 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_3:6693518-6693537 Msa0100160:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_3:6693522-6693541 None:intergenic 25.0%
!! ATTTGATTTCTTAGAAGGTT+TGG + chr1_3:6693780-6693799 None:intergenic 25.0%
!! ACAACATTTGATTTCTTAGA+AGG + chr1_3:6693785-6693804 None:intergenic 25.0%
!!! AGAAATAGGAACTTCTTTTT+TGG + chr1_3:6693849-6693868 None:intergenic 25.0%
!! ACTAATTTTGCAAATGCTTT+AGG - chr1_3:6694404-6694423 Msa0100160:CDS 25.0%
! ATTAAGAAAAGAAGAGATCT+CGG + chr1_3:6694858-6694877 None:intergenic 25.0%
! ATAAGTTAACAACATCAAGA+TGG + chr1_3:6695685-6695704 None:intergenic 25.0%
! AAATTGCGGTATAATATATC+TGG - chr1_3:6695716-6695735 Msa0100160:intron 25.0%
! CTATATAACAAAACAGAAGT+AGG + chr1_3:6695881-6695900 None:intergenic 25.0%
! TAATAATTTCAGAGTCTGAT+CGG - chr1_3:6696022-6696041 Msa0100160:intron 25.0%
! TTACAATAATGTCATCTCAT+TGG - chr1_3:6696071-6696090 Msa0100160:intron 25.0%
!!! TGTTTTCATAGTTTTTTCCA+AGG + chr1_3:6696129-6696148 None:intergenic 25.0%
! TTGGAAAAAACTATGAAAAC+AGG - chr1_3:6696128-6696147 Msa0100160:intron 25.0%
! TTGTTTAGAAAACAGAAAAC+GGG - chr1_3:6696193-6696212 Msa0100160:intron 25.0%
! AGTTCTCTTAAAACAAAAAC+AGG - chr1_3:6696251-6696270 Msa0100160:intron 25.0%
!!! TTTTAGGTCTTATATGATGA+CGG - chr1_3:6696471-6696490 Msa0100160:intron 25.0%
! GGAAATATTGAATTTCAAAG+AGG - chr1_3:6696500-6696519 Msa0100160:intron 25.0%
!!! GTTTTAACATGTGAAATTGA+AGG + chr1_3:6696580-6696599 None:intergenic 25.0%
!! ATTGCAATTTTTCTCTTAAC+AGG - chr1_3:6696622-6696641 Msa0100160:intron 25.0%
!!! GTTTTGATGTATTCCTAATT+TGG - chr1_3:6696873-6696892 Msa0100160:intron 25.0%
! TACAATGTTTACAGAAATCT+TGG - chr1_3:6696935-6696954 Msa0100160:intron 25.0%
! ATCAAAAAAGGAAGTAAAGA+AGG - chr1_3:6697250-6697269 Msa0100160:intron 25.0%
! TAAAGAAGGAATCTTCTAAA+AGG - chr1_3:6697264-6697283 Msa0100160:intron 25.0%
!! TTAGTGAATGTTGTTGATTA+AGG - chr1_3:6697287-6697306 Msa0100160:intron 25.0%
!! GAGTTATTAACCTTTTACTT+TGG - chr1_3:6697330-6697349 Msa0100160:intron 25.0%
!!! ATCTTTGGATTTCTTTGTTT+TGG + chr1_3:6697639-6697658 None:intergenic 25.0%
!! TTAAGAGTGTTCTTACAATC+AGG + chr1_3:6688693-6688712 None:intergenic 30.0%
TAACAAACTTCATGCAACAA+AGG + chr1_3:6688795-6688814 None:intergenic 30.0%
! TTTGTTGCATGAAGTTTGTT+AGG - chr1_3:6688794-6688813 Msa0100160:CDS 30.0%
!! TTGTTGCATGAAGTTTGTTA+GGG - chr1_3:6688795-6688814 Msa0100160:CDS 30.0%
CTCAAATATCAACGAAATTC+AGG + chr1_3:6688865-6688884 None:intergenic 30.0%
TCATATACATCAAACAGTTG+AGG + chr1_3:6688983-6689002 None:intergenic 30.0%
!!! CAGTTTTGAGATTTGGAATT+TGG - chr1_3:6689092-6689111 Msa0100160:CDS 30.0%
!! ATTTGGATAGTGGATTTGTT+AGG - chr1_3:6689109-6689128 Msa0100160:intron 30.0%
!! TTTGGATAGTGGATTTGTTA+GGG - chr1_3:6689110-6689129 Msa0100160:intron 30.0%
! ATTTGTTAGGGTTACTTTCA+TGG - chr1_3:6689122-6689141 Msa0100160:intron 30.0%
!! AACTGATTTGTATGCTGATA+TGG - chr1_3:6689230-6689249 Msa0100160:intron 30.0%
! ATGTACTACTAGGTGTTTTT+GGG - chr1_3:6689328-6689347 Msa0100160:intron 30.0%
TTGGGAATAAAGAACGATAA+AGG - chr1_3:6689346-6689365 Msa0100160:intron 30.0%
AAAGAACGATAAAGGAATGT+AGG - chr1_3:6689354-6689373 Msa0100160:intron 30.0%
!! ACAAACGACTAGTTTATGTA+AGG - chr1_3:6689380-6689399 Msa0100160:intron 30.0%
! TATTAGTTTAAGCACGTGTT+TGG + chr1_3:6689574-6689593 None:intergenic 30.0%
TCTTAGTTTAAGCACATGTT+TGG + chr1_3:6689659-6689678 None:intergenic 30.0%
TCATTTAAACAGGCTATGAA+AGG + chr1_3:6689721-6689740 None:intergenic 30.0%
AGGATGTTGAATACATTTCT+CGG - chr1_3:6689868-6689887 Msa0100160:intron 30.0%
GGAAATTGTTGGATATGAAA+AGG + chr1_3:6690171-6690190 None:intergenic 30.0%
TTTCATATCCAACAATTTCC+CGG - chr1_3:6690171-6690190 Msa0100160:intron 30.0%
TACAGAAAGCAATAAAGGAT+TGG + chr1_3:6690224-6690243 None:intergenic 30.0%
!! GTAGGCTTTTATTTGCAATT+GGG - chr1_3:6690454-6690473 Msa0100160:intron 30.0%
!! GCAAAAGCTCTAAAAAATGA+AGG - chr1_3:6690541-6690560 Msa0100160:CDS 30.0%
! TACCATAGTTACTTTAGTCT+TGG - chr1_3:6691029-6691048 Msa0100160:intron 30.0%
ATCCAAGACTAAAGTAACTA+TGG + chr1_3:6691034-6691053 None:intergenic 30.0%
!! TTACTTTAGTCTTGGATGTA+AGG - chr1_3:6691037-6691056 Msa0100160:intron 30.0%
!! AAACCTCGTTTAATTTTCGT+CGG - chr1_3:6691167-6691186 Msa0100160:intron 30.0%
AAAAACCTTTCAAATAGTGG+TGG + chr1_3:6691250-6691269 None:intergenic 30.0%
! TTTTACTAAATCACGAATCG+TGG - chr1_3:6691267-6691286 Msa0100160:intron 30.0%
AAATCATGGAGAAGTTATGT+AGG - chr1_3:6691392-6691411 Msa0100160:intron 30.0%
! TTATGTAGGTCTTATGACAA+TGG - chr1_3:6691406-6691425 Msa0100160:intron 30.0%
GCAATTAATGCTTTCAATGA+TGG + chr1_3:6691559-6691578 None:intergenic 30.0%
AGCATTTCTTGAAGACAATA+AGG - chr1_3:6691952-6691971 Msa0100160:intron 30.0%
TTTCTTGAAGACAATAAGGT+AGG - chr1_3:6691956-6691975 Msa0100160:intron 30.0%
TTCTTGAAGACAATAAGGTA+GGG - chr1_3:6691957-6691976 Msa0100160:intron 30.0%
TCTTAAGATTGTATCATGTG+AGG + chr1_3:6692181-6692200 None:intergenic 30.0%
!! TTTGCTTTTGACTAAATGGA+AGG - chr1_3:6692217-6692236 Msa0100160:CDS 30.0%
!! TTGCTTTTGACTAAATGGAA+GGG - chr1_3:6692218-6692237 Msa0100160:CDS 30.0%
CCAGTTATACATCAAAAGAA+AGG + chr1_3:6692341-6692360 None:intergenic 30.0%
! CCTTTCTTTTGATGTATAAC+TGG - chr1_3:6692338-6692357 Msa0100160:CDS 30.0%
TAGTCATTGTATTCTTTGCA+TGG - chr1_3:6692381-6692400 Msa0100160:CDS 30.0%
AGTCATTGTATTCTTTGCAT+GGG - chr1_3:6692382-6692401 Msa0100160:CDS 30.0%
CAAAATCATTTCACCTAATC+TGG + chr1_3:6692496-6692515 None:intergenic 30.0%
! ATCTCTGTTTGAAACTTTCA+GGG - chr1_3:6692644-6692663 Msa0100160:CDS 30.0%
GTAAAAAAAGACAATGAGGT+TGG - chr1_3:6692774-6692793 Msa0100160:CDS 30.0%
TTCACAGCTTGCAATAAATT+GGG + chr1_3:6692975-6692994 None:intergenic 30.0%
ATTCACAGCTTGCAATAAAT+TGG + chr1_3:6692976-6692995 None:intergenic 30.0%
! GTCAATTTTTCTTGATTAGG+TGG - chr1_3:6693328-6693347 Msa0100160:CDS 30.0%
! AGTTCCTATTTCTCTTAATG+AGG - chr1_3:6693856-6693875 Msa0100160:intron 30.0%
CTATCCTCATTAAGAGAAAT+AGG + chr1_3:6693863-6693882 None:intergenic 30.0%
! AAGATTTCATCATCTAAAGC+AGG - chr1_3:6693932-6693951 Msa0100160:intron 30.0%
TGCAGAAGATATTTCGAAAA+AGG - chr1_3:6694072-6694091 Msa0100160:intron 30.0%
!! ATTCTAAAGTAAAACCAGCA+AGG - chr1_3:6694113-6694132 Msa0100160:intron 30.0%
AAAAAGAAGACACATGTGAA+AGG - chr1_3:6694238-6694257 Msa0100160:intron 30.0%
! TTTGCAAATGCTTTAGGTAA+TGG - chr1_3:6694410-6694429 Msa0100160:CDS 30.0%
! AAAAATGAGCAAAGTCTTGT+TGG - chr1_3:6694783-6694802 Msa0100160:CDS 30.0%
AAATCATTTAGAGAGAGAAG+AGG + chr1_3:6694890-6694909 None:intergenic 30.0%
!! AGTGTTCCTTTCATTTTAAC+TGG - chr1_3:6694935-6694954 Msa0100160:intron 30.0%
! ACCTATTTTGCAGTGTTTTT+AGG - chr1_3:6695128-6695147 Msa0100160:intron 30.0%
TCCTAAAAACACTGCAAAAT+AGG + chr1_3:6695132-6695151 None:intergenic 30.0%
!!! TGAGCTCACAATTTTTTTCT+TGG - chr1_3:6695428-6695447 Msa0100160:intron 30.0%
! AAAAGCTCTAATGAAATGCT+AGG - chr1_3:6695572-6695591 Msa0100160:intron 30.0%
! AAAGCTCTAATGAAATGCTA+GGG - chr1_3:6695573-6695592 Msa0100160:intron 30.0%
TGTTGTTAACTTATTCACCA+TGG - chr1_3:6695691-6695710 Msa0100160:intron 30.0%
TATTCACCATGGTAAAATTG+CGG - chr1_3:6695702-6695721 Msa0100160:intron 30.0%
! ATTATACCGCAATTTTACCA+TGG + chr1_3:6695711-6695730 None:intergenic 30.0%
!! ATCTTCTGCAGGTTTTATAA+AGG - chr1_3:6695746-6695765 Msa0100160:intron 30.0%
!! GAACAGCTTACTTTTCAAAT+GGG + chr1_3:6695909-6695928 None:intergenic 30.0%
!! TGAACAGCTTACTTTTCAAA+TGG + chr1_3:6695910-6695929 None:intergenic 30.0%
AGTGAAAACAAGGTCATTAT+TGG + chr1_3:6696158-6696177 None:intergenic 30.0%
AAAACAAGACAGTGAAAACA+AGG + chr1_3:6696168-6696187 None:intergenic 30.0%
!!! TACAAAGGCAACTCTTTTTT+TGG - chr1_3:6696293-6696312 Msa0100160:intron 30.0%
!!! ACAAAGGCAACTCTTTTTTT+GGG - chr1_3:6696294-6696313 Msa0100160:intron 30.0%
GATGAGATGAGATTAAGAAA+TGG - chr1_3:6696325-6696344 Msa0100160:intron 30.0%
CATATAAGACCTAAAACAGA+GGG + chr1_3:6696467-6696486 None:intergenic 30.0%
TCATATAAGACCTAAAACAG+AGG + chr1_3:6696468-6696487 None:intergenic 30.0%
! TTTTTCTCTTAACAGGAAGA+AGG - chr1_3:6696629-6696648 Msa0100160:intron 30.0%
TTGATGTATTCCTAATTTGG+TGG - chr1_3:6696876-6696895 Msa0100160:intron 30.0%
! ATTGTAGTTTGAGCTTTTAG+TGG + chr1_3:6696921-6696940 None:intergenic 30.0%
TCTTCATGTGATTTATTCTG+TGG - chr1_3:6697006-6697025 Msa0100160:intron 30.0%
!!! AGCTTTTGCCTTTAGTTTTT+GGG - chr1_3:6697113-6697132 Msa0100160:intron 30.0%
AAAAAGCTCAGCTAGAAAAT+GGG + chr1_3:6697143-6697162 None:intergenic 30.0%
!!! AGCTTTTTGCCTTTAGTTTT+TGG - chr1_3:6697155-6697174 Msa0100160:intron 30.0%
!!! GCTTTTTGCCTTTAGTTTTT+GGG - chr1_3:6697156-6697175 Msa0100160:intron 30.0%
!!! GTTTTCCCTTTCTTTTTTAG+CGG + chr1_3:6697218-6697237 None:intergenic 30.0%
AAATGCTGGTGAATCAAAAA+AGG - chr1_3:6697238-6697257 Msa0100160:intron 30.0%
TGTTTCAACATCATCATCTT+TGG + chr1_3:6697654-6697673 None:intergenic 30.0%
CAGCAAATTAAATTTCACCT+TGG + chr1_3:6697789-6697808 None:intergenic 30.0%
AAGAACGAAGGTTTCAACAA+TGG - chr1_3:6688576-6688595 Msa0100160:CDS 35.0%
CGATTTCTTCGTTAAATTCG+TGG - chr1_3:6688726-6688745 Msa0100160:CDS 35.0%
! GAGATTTGGAATTTGGATAG+TGG - chr1_3:6689099-6689118 Msa0100160:intron 35.0%
!! ATAGGTTGTTTTCCAACAAG+TGG - chr1_3:6689201-6689220 Msa0100160:intron 35.0%
!! TAGGTTGTTTTCCAACAAGT+GGG - chr1_3:6689202-6689221 Msa0100160:intron 35.0%
TGGAAACTAACGGTATATCT+TGG - chr1_3:6689299-6689318 Msa0100160:intron 35.0%
CTAACGGTATATCTTGGTAT+AGG - chr1_3:6689305-6689324 Msa0100160:intron 35.0%
TTGGTATAGGATGTACTACT+AGG - chr1_3:6689318-6689337 Msa0100160:intron 35.0%
! GATGTACTACTAGGTGTTTT+TGG - chr1_3:6689327-6689346 Msa0100160:intron 35.0%
!!! TTTTTGAGACACGTGCAAAA+AGG - chr1_3:6689512-6689531 Msa0100160:intron 35.0%
!!! TTTTGAGACACGTGCAAAAA+GGG - chr1_3:6689513-6689532 Msa0100160:intron 35.0%
TAAAATTTCGCCTGTTGTAG+TGG - chr1_3:6689924-6689943 Msa0100160:intron 35.0%
CAAATATCGCGATCTAACAT+GGG + chr1_3:6690071-6690090 None:intergenic 35.0%
TCAAATATCGCGATCTAACA+TGG + chr1_3:6690072-6690091 None:intergenic 35.0%
TGTTGGATATGAAAAGGCAA+AGG + chr1_3:6690165-6690184 None:intergenic 35.0%
AGAGCTACAGAAAGCAATAA+AGG + chr1_3:6690229-6690248 None:intergenic 35.0%
!! ACTGTTTTGTTCCTTATTCC+TGG - chr1_3:6690408-6690427 Msa0100160:intron 35.0%
TTTGTTCCTTATTCCTGGAT+TGG - chr1_3:6690413-6690432 Msa0100160:intron 35.0%
!! GGTAGGCTTTTATTTGCAAT+TGG - chr1_3:6690453-6690472 Msa0100160:intron 35.0%
!!! TGGGCCTATTTTAATGAACT+TGG + chr1_3:6690573-6690592 None:intergenic 35.0%
! CGCACACACATATTTCATTT+TGG - chr1_3:6690765-6690784 Msa0100160:intron 35.0%
TGATTTCCTCCAACATAACA+CGG + chr1_3:6690908-6690927 None:intergenic 35.0%
CTATACCACCACTATTTGAA+AGG - chr1_3:6691242-6691261 Msa0100160:intron 35.0%
CTATACTACAACAGATTGAC+TGG + chr1_3:6691353-6691372 None:intergenic 35.0%
AAATTGAAAGCTGCCTATCA+AGG - chr1_3:6691491-6691510 Msa0100160:CDS 35.0%
GTGATTGTTCAATCCTTGAT+AGG + chr1_3:6691507-6691526 None:intergenic 35.0%
GCATTTAGCATAGATTCAGA+AGG + chr1_3:6691529-6691548 None:intergenic 35.0%
TTCATTTGACCATCATCGTA+AGG + chr1_3:6691673-6691692 None:intergenic 35.0%
! TTACGATGATGGTCAAATGA+AGG - chr1_3:6691672-6691691 Msa0100160:intron 35.0%
!!! TGTTGTCATTTTCTTTCAGG+AGG - chr1_3:6691773-6691792 Msa0100160:intron 35.0%
! TTTTCTTTCAGGAGGTCTTT+AGG - chr1_3:6691781-6691800 Msa0100160:intron 35.0%
! TGACTTTTGCAACTGTTTCA+AGG + chr1_3:6691875-6691894 None:intergenic 35.0%
TTGAAACAGTTGCAAAAGTC+AGG - chr1_3:6691874-6691893 Msa0100160:CDS 35.0%
CTGAAACATCTCCAAAATGA+GGG + chr1_3:6691934-6691953 None:intergenic 35.0%
TCTTGAAGACAATAAGGTAG+GGG - chr1_3:6691958-6691977 Msa0100160:intron 35.0%
CTGTTTAGGCTTATATCTCT+AGG - chr1_3:6692113-6692132 Msa0100160:CDS 35.0%
ACACACTTCTTCACACTAAT+AGG - chr1_3:6692470-6692489 Msa0100160:CDS 35.0%
! CATCTCTGTTTGAAACTTTC+AGG - chr1_3:6692643-6692662 Msa0100160:CDS 35.0%
! AGAAAATGTTTTCTCGTCCA+TGG - chr1_3:6692677-6692696 Msa0100160:intron 35.0%
GAGGATCATTATAGTTTCCA+TGG + chr1_3:6692697-6692716 None:intergenic 35.0%
GAATACCTTGGGTATTTCTT+TGG - chr1_3:6692992-6693011 Msa0100160:intron 35.0%
ATCATCCAAAGAAATACCCA+AGG + chr1_3:6693000-6693019 None:intergenic 35.0%
TGATGTCTCTTTGCATATTG+AGG + chr1_3:6693039-6693058 None:intergenic 35.0%
CAAAGAGACATCAGATAACT+TGG - chr1_3:6693046-6693065 Msa0100160:intron 35.0%
! AATGATGTATGTGCTACTAG+TGG - chr1_3:6693074-6693093 Msa0100160:intron 35.0%
! TTGTTTACCCTTCAGCTTTT+GGG - chr1_3:6693293-6693312 Msa0100160:CDS 35.0%
TCATTATCCCAAAAGCTGAA+GGG + chr1_3:6693303-6693322 None:intergenic 35.0%
TTCATTATCCCAAAAGCTGA+AGG + chr1_3:6693304-6693323 None:intergenic 35.0%
AAGTCCCTTAAGAATCAAGA+TGG - chr1_3:6693476-6693495 Msa0100160:intron 35.0%
GGTACCATCTTGATTCTTAA+GGG + chr1_3:6693483-6693502 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_3:6693512-6693531 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_3:6693512-6693531 None:intergenic 35.0%
ATCAAATGTTGTCAGTGAGA+AGG - chr1_3:6693793-6693812 Msa0100160:intron 35.0%
!! TTTGTCATTCTCTGAAGTTC+CGG + chr1_3:6693900-6693919 None:intergenic 35.0%
! ATTTCATCATCTAAAGCAGG+TGG - chr1_3:6693935-6693954 Msa0100160:intron 35.0%
!! ATTTCGAAAAAGGTGTCTGA+AGG - chr1_3:6694082-6694101 Msa0100160:intron 35.0%
AAAATCTTCTGCTGAAGATG+AGG - chr1_3:6694282-6694301 Msa0100160:intron 35.0%
GTTCATTCATATCACCAACA+TGG - chr1_3:6694350-6694369 Msa0100160:intron 35.0%
AACCAAAGATGAACATTCAG+AGG - chr1_3:6694461-6694480 Msa0100160:CDS 35.0%
!!! GTTCACACTTTTTCTTTTCC+TGG + chr1_3:6694522-6694541 None:intergenic 35.0%
! TTCATGATGCTTTGTCCTTT+TGG - chr1_3:6694577-6694596 Msa0100160:intron 35.0%
GCAAAAAGAACAGTTCCAAA+AGG + chr1_3:6694595-6694614 None:intergenic 35.0%
! CTGTTCTTTTTGCAGCTATA+TGG - chr1_3:6694602-6694621 Msa0100160:intron 35.0%
TTGGAAAACGAGTGAAAGTT+TGG - chr1_3:6694802-6694821 Msa0100160:CDS 35.0%
TCAGTATGCACATGAAAGAA+TGG + chr1_3:6694968-6694987 None:intergenic 35.0%
CAACAGCAAACAAGTGTAAT+GGG + chr1_3:6695030-6695049 None:intergenic 35.0%
TCAGTTTCAGTCTCTATTTC+CGG - chr1_3:6695212-6695231 Msa0100160:intron 35.0%
TAAAAGCCAAAGCTAAGCTA+GGG + chr1_3:6695279-6695298 None:intergenic 35.0%
TTCATGTGTGCTATACAGTT+AGG - chr1_3:6695395-6695414 Msa0100160:intron 35.0%
AACATGGTCTCACTACAATA+AGG + chr1_3:6695505-6695524 None:intergenic 35.0%
! TAAGAAGCACAAGGTGATTT+GGG - chr1_3:6695796-6695815 Msa0100160:intron 35.0%
TAAATTGGAAGGAGACAACA+GGG + chr1_3:6695843-6695862 None:intergenic 35.0%
ATAAATTGGAAGGAGACAAC+AGG + chr1_3:6695844-6695863 None:intergenic 35.0%
TTTGCATCAATGTTCGTAGT+TGG - chr1_3:6696761-6696780 Msa0100160:intron 35.0%
TTCAATTCAACACAAGGCAT+GGG + chr1_3:6696977-6696996 None:intergenic 35.0%
TTTCAATTCAACACAAGGCA+TGG + chr1_3:6696978-6696997 None:intergenic 35.0%
!!! GAGCTTTTGCCTTTAGTTTT+TGG - chr1_3:6697112-6697131 Msa0100160:intron 35.0%
CAAAAAGCTCAGCTAGAAAA+TGG + chr1_3:6697144-6697163 None:intergenic 35.0%
TTTAGGCCGCTAAAAAAGAA+AGG - chr1_3:6697209-6697228 Msa0100160:intron 35.0%
TTAGGCCGCTAAAAAAGAAA+GGG - chr1_3:6697210-6697229 Msa0100160:intron 35.0%
AAGAAAGGGAAAACAAATGC+TGG - chr1_3:6697224-6697243 Msa0100160:intron 35.0%
CACTGCTAAACCAAAGTAAA+AGG + chr1_3:6697343-6697362 None:intergenic 35.0%
!! CTTTTACTTTGGTTTAGCAG+TGG - chr1_3:6697341-6697360 Msa0100160:intron 35.0%
ATCAGATTTGCCAACAATCT+TGG + chr1_3:6697420-6697439 None:intergenic 35.0%
AAGATTGTTGGCAAATCTGA+TGG - chr1_3:6697419-6697438 Msa0100160:intron 35.0%
AAGGATTCTGCACAAAAAAC+TGG - chr1_3:6697461-6697480 Msa0100160:intron 35.0%
AAAAACTGGTGGTAAATCTG+AGG - chr1_3:6697475-6697494 Msa0100160:intron 35.0%
AACAATTCCAAGAAGACTGA+TGG - chr1_3:6697611-6697630 Msa0100160:intron 35.0%
! AAGCAAGAAACTCTGAAAAG+TGG - chr1_3:6697698-6697717 Msa0100160:CDS 35.0%
AAAAGTGGAAAATCCAAGCA+AGG - chr1_3:6697713-6697732 Msa0100160:CDS 35.0%
!! GGTGAAATTTAATTTGCTGC+AGG - chr1_3:6697790-6697809 Msa0100160:five_prime_UTR 35.0%
CTCTGATGATTCATCAAAAG+AGG - chr1_3:6697835-6697854 Msa0100160:five_prime_UTR 35.0%
TAAGACACCAAGTTCTTCAA+AGG - chr1_3:6697874-6697893 Msa0100160:five_prime_UTR 35.0%
AACAATGGCTTCCATCGATA+AGG - chr1_3:6688591-6688610 Msa0100160:CDS 40.0%
AGATTATCCACAGAAGAAGG+AGG + chr1_3:6688661-6688680 None:intergenic 40.0%
AGCAGATTATCCACAGAAGA+AGG + chr1_3:6688664-6688683 None:intergenic 40.0%
! TTGAATATGCTGACTACCCA+GGG - chr1_3:6689157-6689176 Msa0100160:intron 40.0%
!! AGGTTGTTTTCCAACAAGTG+GGG - chr1_3:6689203-6689222 Msa0100160:intron 40.0%
!!! TCAGTTTTTTCCCCACTTGT+TGG + chr1_3:6689216-6689235 None:intergenic 40.0%
TTAAGCACGTGTTTGGTTGT+GGG + chr1_3:6689567-6689586 None:intergenic 40.0%
TTTAAGCACGTGTTTGGTTG+TGG + chr1_3:6689568-6689587 None:intergenic 40.0%
CACATGTTTGGTTGTGTAGT+AGG + chr1_3:6689647-6689666 None:intergenic 40.0%
GGGCAGGAAATCATTTACTT+GGG + chr1_3:6690105-6690124 None:intergenic 40.0%
TATGAAAAGGCAAAGGTCGA+CGG + chr1_3:6690158-6690177 None:intergenic 40.0%
! ATTGCGCTACTTTGCAAAGT+AGG + chr1_3:6690264-6690283 None:intergenic 40.0%
TGCAAAGTAGCGCAATGAAA+TGG - chr1_3:6690268-6690287 Msa0100160:intron 40.0%
CGCAATGAAATGGAAGAGAA+TGG - chr1_3:6690278-6690297 Msa0100160:intron 40.0%
GCTTTAATTGACTGAGCACA+TGG + chr1_3:6690498-6690517 None:intergenic 40.0%
TGCTCAGTCAATTAAAGCGT+GGG - chr1_3:6690500-6690519 Msa0100160:intron 40.0%
! TTAAAGCGTGGGCTCTTTTA+TGG - chr1_3:6690511-6690530 Msa0100160:intron 40.0%
! TGGGCTCTTTTATGGTAAAG+AGG - chr1_3:6690519-6690538 Msa0100160:intron 40.0%
GCCTAATAGATGGGTCATAT+GGG + chr1_3:6690592-6690611 None:intergenic 40.0%
TGCCTAATAGATGGGTCATA+TGG + chr1_3:6690593-6690612 None:intergenic 40.0%
GGAGGAAATCAGTAGTATGT+TGG - chr1_3:6690917-6690936 Msa0100160:intron 40.0%
GGAAATCAGTAGTATGTTGG+AGG - chr1_3:6690920-6690939 Msa0100160:intron 40.0%
ACACCGACGAAAATTAAACG+AGG + chr1_3:6691173-6691192 None:intergenic 40.0%
CTATTTACTGCAATCCGAGA+TGG + chr1_3:6691199-6691218 None:intergenic 40.0%
TCTCGGATTGCAGTAAATAG+TGG - chr1_3:6691199-6691218 Msa0100160:intron 40.0%
CAAATAGTGGTGGTATAGCA+CGG + chr1_3:6691240-6691259 None:intergenic 40.0%
ATCACGAATCGTGGAACAAT+AGG - chr1_3:6691276-6691295 Msa0100160:intron 40.0%
TCACGAATCGTGGAACAATA+GGG - chr1_3:6691277-6691296 Msa0100160:intron 40.0%
! AACAGATTGACTGGTTCACA+GGG + chr1_3:6691344-6691363 None:intergenic 40.0%
! TCTTGTTATCTCACTGAAGC+AGG + chr1_3:6691632-6691651 None:intergenic 40.0%
TACATGATAAGTCAAGCCGA+TGG - chr1_3:6691829-6691848 Msa0100160:CDS 40.0%
AAGTCCTCTTTGAGTACCAT+CGG + chr1_3:6691848-6691867 None:intergenic 40.0%
GCTGAAACATCTCCAAAATG+AGG + chr1_3:6691935-6691954 None:intergenic 40.0%
! CGATTTTGTGGGATCAAGTT+CGG + chr1_3:6692057-6692076 None:intergenic 40.0%
!! TCCCACAAAATCGACTTGTA+CGG - chr1_3:6692064-6692083 Msa0100160:CDS 40.0%
!! ACCGTACAAGTCGATTTTGT+GGG + chr1_3:6692068-6692087 None:intergenic 40.0%
! GCTTATATCTCTAGGAGATG+TGG - chr1_3:6692121-6692140 Msa0100160:CDS 40.0%
AAGAAAGGATAGCGTACAAC+AGG + chr1_3:6692326-6692345 None:intergenic 40.0%
CATTGTATTCTTTGCATGGG+TGG - chr1_3:6692385-6692404 Msa0100160:CDS 40.0%
TCACACTAATAGGCCAGATT+AGG - chr1_3:6692480-6692499 Msa0100160:CDS 40.0%
! TTCTAGTTGCAGTGTGTTTC+TGG - chr1_3:6692566-6692585 Msa0100160:CDS 40.0%
!! GTGTTTCTGGTTTCTTTACC+TGG - chr1_3:6692579-6692598 Msa0100160:CDS 40.0%
!! TTCTGGTTTCTTTACCTGGT+TGG - chr1_3:6692583-6692602 Msa0100160:CDS 40.0%
GGATGCAAAATGTGTGAACA+TGG - chr1_3:6692613-6692632 Msa0100160:CDS 40.0%
CTTCACTTTCTTCAAGACAG+AGG + chr1_3:6692716-6692735 None:intergenic 40.0%
!! AAGACAATGAGGTTGGTGTT+TGG - chr1_3:6692781-6692800 Msa0100160:CDS 40.0%
TTTGCCAATTGCTCGAAAGT+TGG - chr1_3:6692911-6692930 Msa0100160:CDS 40.0%
TTGCCAATTGCTCGAAAGTT+GGG - chr1_3:6692912-6692931 Msa0100160:CDS 40.0%
TCCTTGAAAGTTGTGCAACA+AGG - chr1_3:6692943-6692962 Msa0100160:CDS 40.0%
ATTGCAAGCTGTGAATACCT+TGG - chr1_3:6692980-6692999 Msa0100160:intron 40.0%
TTGCAAGCTGTGAATACCTT+GGG - chr1_3:6692981-6693000 Msa0100160:intron 40.0%
! ATGTGCTACTAGTGGTCATA+TGG - chr1_3:6693082-6693101 Msa0100160:intron 40.0%
! GTTGTTTACCCTTCAGCTTT+TGG - chr1_3:6693292-6693311 Msa0100160:CDS 40.0%
! ATTATCTTGTTGTGGTGGTG+TGG + chr1_3:6693375-6693394 None:intergenic 40.0%
CGGTACCATCTTGATTCTTA+AGG + chr1_3:6693484-6693503 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_3:6693541-6693560 Msa0100160:CDS 40.0%
AGTACCATCAAGAAGCAAGA+TGG - chr1_3:6693605-6693624 Msa0100160:CDS 40.0%
AGTACCATCTTGCTTCTTGA+TGG + chr1_3:6693612-6693631 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_3:6693541-6693560 Msa0100160:CDS 40.0%
TAGCTTTCTTTCCTTTCCTC+CGG + chr1_3:6693742-6693761 None:intergenic 40.0%
! GATAGTGTTGTTGAAGCTAC+CGG - chr1_3:6693878-6693897 Msa0100160:intron 40.0%
!! AAAGGTGTCTGAAGGAACAT+CGG - chr1_3:6694090-6694109 Msa0100160:intron 40.0%
TTCACATCAGAGCTACGAAT+GGG + chr1_3:6694157-6694176 None:intergenic 40.0%
TTTCACATCAGAGCTACGAA+TGG + chr1_3:6694158-6694177 None:intergenic 40.0%
AACTGTTGTACACGCAGTTA+TGG - chr1_3:6694177-6694196 Msa0100160:intron 40.0%
! GTCTTCTTTTTCTTGTCCTC+CGG + chr1_3:6694229-6694248 None:intergenic 40.0%
TGTGAAAGGTAGCTCAGAAA+AGG - chr1_3:6694252-6694271 Msa0100160:intron 40.0%
GTGAAAGGTAGCTCAGAAAA+GGG - chr1_3:6694253-6694272 Msa0100160:intron 40.0%
TTCTGCTGAAGATGAGGATA+AGG - chr1_3:6694288-6694307 Msa0100160:intron 40.0%
CTCCTCTGAATGTTCATCTT+TGG + chr1_3:6694466-6694485 None:intergenic 40.0%
TTCCTCTTCAGAGTTGTCTT+AGG + chr1_3:6694492-6694511 None:intergenic 40.0%
TTTCTTGATATCAGACCCCT+GGG + chr1_3:6694766-6694785 None:intergenic 40.0%
! TTTTCTTGATATCAGACCCC+TGG + chr1_3:6694767-6694786 None:intergenic 40.0%
GAAAACGAGTGAAAGTTTGG+TGG - chr1_3:6694805-6694824 Msa0100160:CDS 40.0%
AAAGGAACACTGAATGCCAT+GGG + chr1_3:6694926-6694945 None:intergenic 40.0%
! GTGGTGCCAGTTAAAATGAA+AGG + chr1_3:6694944-6694963 None:intergenic 40.0%
ATGCACATGAAAGAATGGAG+TGG + chr1_3:6694963-6694982 None:intergenic 40.0%
ACATTGAGTGAACTTCAGTG+AGG + chr1_3:6694991-6695010 None:intergenic 40.0%
GCAACAGCAAACAAGTGTAA+TGG + chr1_3:6695031-6695050 None:intergenic 40.0%
!! ACACTTGTTTGCTGTTGCAT+AGG - chr1_3:6695033-6695052 Msa0100160:intron 40.0%
!! CACTTGTTTGCTGTTGCATA+GGG - chr1_3:6695034-6695053 Msa0100160:intron 40.0%
TGCTGTTGCATAGGGTTATA+TGG - chr1_3:6695042-6695061 Msa0100160:intron 40.0%
TACTTGGAATCAGCCAAATC+AGG + chr1_3:6695072-6695091 None:intergenic 40.0%
! AAGTAGTTCTCCCCTGTTTT+GGG - chr1_3:6695087-6695106 Msa0100160:intron 40.0%
CTTACTATCTCCCAAAACAG+GGG + chr1_3:6695100-6695119 None:intergenic 40.0%
GCTTACTATCTCCCAAAACA+GGG + chr1_3:6695101-6695120 None:intergenic 40.0%
TGCTTACTATCTCCCAAAAC+AGG + chr1_3:6695102-6695121 None:intergenic 40.0%
!!! TGTTTTTAGGAAGCTCCTAG+TGG - chr1_3:6695141-6695160 Msa0100160:intron 40.0%
! AGTCTCTATTTCCGGCATTT+TGG - chr1_3:6695220-6695239 Msa0100160:intron 40.0%
! GTCTCTATTTCCGGCATTTT+GGG - chr1_3:6695221-6695240 Msa0100160:intron 40.0%
! TTTTGTCCCTAGCTTAGCTT+TGG - chr1_3:6695270-6695289 Msa0100160:intron 40.0%
CTAAAAGCCAAAGCTAAGCT+AGG + chr1_3:6695280-6695299 None:intergenic 40.0%
!!! CTAGCTTAGCTTTGGCTTTT+AGG - chr1_3:6695278-6695297 Msa0100160:intron 40.0%
TCTAATGAAATGCTAGGGCT+AGG - chr1_3:6695578-6695597 Msa0100160:intron 40.0%
CTAATGAAATGCTAGGGCTA+GGG - chr1_3:6695579-6695598 Msa0100160:intron 40.0%
AATCACCTTGTGCTTCTTAG+TGG + chr1_3:6695795-6695814 None:intergenic 40.0%
! CTAAGAAGCACAAGGTGATT+TGG - chr1_3:6695795-6695814 Msa0100160:intron 40.0%
! TCTACTTGTCCCTCTGTTTT+AGG - chr1_3:6696455-6696474 Msa0100160:intron 40.0%
ACATATCAGCAGAAGGTTCA+GGG + chr1_3:6696670-6696689 None:intergenic 40.0%
TACATATCAGCAGAAGGTTC+AGG + chr1_3:6696671-6696690 None:intergenic 40.0%
GGAACATACATATCAGCAGA+AGG + chr1_3:6696677-6696696 None:intergenic 40.0%
AGGCAGAATTCCACCAAATT+AGG + chr1_3:6696889-6696908 None:intergenic 40.0%
! GCTTTTAGTGGCACAAATCA+AGG + chr1_3:6696909-6696928 None:intergenic 40.0%
! TCTCATTTTGCCTGACCAAT+TGG - chr1_3:6697058-6697077 Msa0100160:intron 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_3:6697124-6697143 None:intergenic 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_3:6697124-6697143 None:intergenic 40.0%
! TTACTTTGGTTTAGCAGTGG+AGG - chr1_3:6697344-6697363 Msa0100160:intron 40.0%
!! TTTTGGGTAGACTTTGCAGA+TGG + chr1_3:6697395-6697414 None:intergenic 40.0%
ACCCAAAAGTCCAAGATTGT+TGG - chr1_3:6697407-6697426 Msa0100160:intron 40.0%
! GCCAACAATCTTGGACTTTT+GGG + chr1_3:6697411-6697430 None:intergenic 40.0%
! TGCCAACAATCTTGGACTTT+TGG + chr1_3:6697412-6697431 None:intergenic 40.0%
GATTCTGCACAAAAAACTGG+TGG - chr1_3:6697464-6697483 Msa0100160:intron 40.0%
! TTTGGAACCATCAGTCTTCT+TGG + chr1_3:6697621-6697640 None:intergenic 40.0%
CAGAGTTTCTTGCTTAGACT+TGG + chr1_3:6697693-6697712 None:intergenic 40.0%
AATCTTAGGTGTTCCTTGCT+TGG + chr1_3:6697729-6697748 None:intergenic 40.0%
TTGGAGGAAGATGCAATCTT+AGG + chr1_3:6697743-6697762 None:intergenic 40.0%
!!! ACTCTTGGTGGATTTTGTCT+TGG + chr1_3:6697762-6697781 None:intergenic 40.0%
AAAAGAGGTTGAAGTCGCAA+AGG - chr1_3:6697850-6697869 Msa0100160:five_prime_UTR 40.0%
! GCGAGATCCGATTTTCACTA+TGG - chr1_3:6688391-6688410 Msa0100160:CDS 45.0%
ACAAGATCTGCGAAGAACGA+AGG - chr1_3:6688564-6688583 Msa0100160:CDS 45.0%
CTCTTCAAGCTCCTTATCGA+TGG + chr1_3:6688605-6688624 None:intergenic 45.0%
CATCGATAAGGAGCTTGAAG+AGG - chr1_3:6688603-6688622 Msa0100160:CDS 45.0%
TCTAGATCCTCCTTCTTCTG+TGG - chr1_3:6688651-6688670 Msa0100160:CDS 45.0%
! CTTGAATATGCTGACTACCC+AGG - chr1_3:6689156-6689175 Msa0100160:intron 45.0%
CTCAAAAAAACGCGCGTCTA+GGG + chr1_3:6689442-6689461 None:intergenic 45.0%
CAAAAAGGGCTGTAAACACG+TGG - chr1_3:6689527-6689546 Msa0100160:intron 45.0%
TAAGCACGTGTTTGGTTGTG+GGG + chr1_3:6689566-6689585 None:intergenic 45.0%
ACACGTGTAAAAAGAGCCGT+AGG - chr1_3:6689605-6689624 Msa0100160:intron 45.0%
ACATATCACGCCACTACAAC+AGG + chr1_3:6689937-6689956 None:intergenic 45.0%
GATCGAACTCCTTAAAGGTG+CGG + chr1_3:6690013-6690032 None:intergenic 45.0%
ACTGCGATCGAACTCCTTAA+AGG + chr1_3:6690018-6690037 None:intergenic 45.0%
GGGGCAGGAAATCATTTACT+TGG + chr1_3:6690106-6690125 None:intergenic 45.0%
GACTCTCCATTACAGTTTGG+GGG + chr1_3:6690136-6690155 None:intergenic 45.0%
GGACTCTCCATTACAGTTTG+GGG + chr1_3:6690137-6690156 None:intergenic 45.0%
CGGACTCTCCATTACAGTTT+GGG + chr1_3:6690138-6690157 None:intergenic 45.0%
ACGGACTCTCCATTACAGTT+TGG + chr1_3:6690139-6690158 None:intergenic 45.0%
TTTACTGGCCGGGAAATTGT+TGG + chr1_3:6690182-6690201 None:intergenic 45.0%
AGAACCAGCAATTTACTGGC+CGG + chr1_3:6690193-6690212 None:intergenic 45.0%
GTCGAGAACCAGCAATTTAC+TGG + chr1_3:6690197-6690216 None:intergenic 45.0%
! GCTTTCTGTAGCTCTGTTTC+TGG - chr1_3:6690234-6690253 Msa0100160:intron 45.0%
! CTTTCCAAACACAAGTGCTG+TGG - chr1_3:6690334-6690353 Msa0100160:intron 45.0%
GACTCACCAATCCAGGAATA+AGG + chr1_3:6690422-6690441 None:intergenic 45.0%
!! TATTCCTGGATTGGTGAGTC+TGG - chr1_3:6690422-6690441 Msa0100160:intron 45.0%
!! ATTCCTGGATTGGTGAGTCT+GGG - chr1_3:6690423-6690442 Msa0100160:intron 45.0%
ATTGGTGAGTCTGGGAAGTT+AGG - chr1_3:6690431-6690450 Msa0100160:intron 45.0%
TTGGTGAGTCTGGGAAGTTA+GGG - chr1_3:6690432-6690451 Msa0100160:intron 45.0%
GTGCTCAGTCAATTAAAGCG+TGG - chr1_3:6690499-6690518 Msa0100160:intron 45.0%
GCCCATATGACCCATCTATT+AGG - chr1_3:6690588-6690607 Msa0100160:intron 45.0%
AACCCTACCTAACTTCGAGA+GGG + chr1_3:6690816-6690835 None:intergenic 45.0%
AAACCCTACCTAACTTCGAG+AGG + chr1_3:6690817-6690836 None:intergenic 45.0%
CTCCTTGATCCGTGTTATGT+TGG - chr1_3:6690896-6690915 Msa0100160:intron 45.0%
CTCCAACATAACACGGATCA+AGG + chr1_3:6690901-6690920 None:intergenic 45.0%
CTTGATCCGTGTTATGTTGG+AGG - chr1_3:6690899-6690918 Msa0100160:intron 45.0%
CACGAATCGTGGAACAATAG+GGG - chr1_3:6691278-6691297 Msa0100160:intron 45.0%
TTCACAGGGAAACTCAGTAG+CGG + chr1_3:6691330-6691349 None:intergenic 45.0%
! CAACAGATTGACTGGTTCAC+AGG + chr1_3:6691345-6691364 None:intergenic 45.0%
TGTTATCTCACTGAAGCAGG+AGG + chr1_3:6691629-6691648 None:intergenic 45.0%
TGCAAAAGTCAGGTCATGTG+TGG - chr1_3:6691884-6691903 Msa0100160:CDS 45.0%
! TGAATGCGATGCCCTCATTT+TGG - chr1_3:6691920-6691939 Msa0100160:intron 45.0%
!! CACCGTACAAGTCGATTTTG+TGG + chr1_3:6692069-6692088 None:intergenic 45.0%
! TCTCTAGGAGATGTGGAACT+CGG - chr1_3:6692128-6692147 Msa0100160:CDS 45.0%
!! CTTTACCTGGTTGGACTAGT+TGG - chr1_3:6692592-6692611 Msa0100160:CDS 45.0%
TGCTGTCATCATGATTCAGG+AGG - chr1_3:6692887-6692906 Msa0100160:CDS 45.0%
TGCCAATTGCTCGAAAGTTG+GGG - chr1_3:6692913-6692932 Msa0100160:CDS 45.0%
! GCCTTGTTGCACAACTTTCA+AGG + chr1_3:6692947-6692966 None:intergenic 45.0%
! CTGATTTGCGATCATGTACC+TGG + chr1_3:6693197-6693216 None:intergenic 45.0%
! GCAGCATTATCTTGTTGTGG+TGG + chr1_3:6693380-6693399 None:intergenic 45.0%
CCAGCAGCATTATCTTGTTG+TGG + chr1_3:6693383-6693402 None:intergenic 45.0%
CCACAACAAGATAATGCTGC+TGG - chr1_3:6693380-6693399 Msa0100160:CDS 45.0%
CCATTGCTCATGACAGACTT+GGG + chr1_3:6693416-6693435 None:intergenic 45.0%
TTTGGACAGAACAGGAGAGT+CGG + chr1_3:6693504-6693523 None:intergenic 45.0%
CGACAGTAAAGAACCAAAGC+TGG - chr1_3:6693706-6693725 Msa0100160:intron 45.0%
!! CAAAGCTGGAAAGAAGTACC+CGG - chr1_3:6693591-6693610 Msa0100160:CDS 45.0%
AGCTTTCTTTCCTTTCCTCC+GGG + chr1_3:6693741-6693760 None:intergenic 45.0%
AACCAACAGCGTCAGATTCA+AGG + chr1_3:6693961-6693980 None:intergenic 45.0%
ATCGTGATTGCTCTCACTTG+GGG + chr1_3:6693990-6694009 None:intergenic 45.0%
CATCGTGATTGCTCTCACTT+GGG + chr1_3:6693991-6694010 None:intergenic 45.0%
TCATCGTGATTGCTCTCACT+TGG + chr1_3:6693992-6694011 None:intergenic 45.0%
AGTAAAACCAGCAAGGCCAT+CGG - chr1_3:6694120-6694139 Msa0100160:intron 45.0%
!!! ATGGGTCCTTTTTTTGCCGA+TGG + chr1_3:6694139-6694158 None:intergenic 45.0%
ACGCAGTTATGGCTGATGTT+GGG - chr1_3:6694188-6694207 Msa0100160:intron 45.0%
! CTCCTAAGACAACTCTGAAG+AGG - chr1_3:6694487-6694506 Msa0100160:CDS 45.0%
ATCTTCTGACTGTTGTCCCA+GGG - chr1_3:6694747-6694766 Msa0100160:CDS 45.0%
! TTTTCTGTCTCCTAGACCCA+TGG - chr1_3:6694907-6694926 Msa0100160:intron 45.0%
GAAAGGAACACTGAATGCCA+TGG + chr1_3:6694927-6694946 None:intergenic 45.0%
GTTATATGGCCCACCTGATT+TGG - chr1_3:6695056-6695075 Msa0100160:intron 45.0%
TGGAATCAGCCAAATCAGGT+GGG + chr1_3:6695068-6695087 None:intergenic 45.0%
TTGGAATCAGCCAAATCAGG+TGG + chr1_3:6695069-6695088 None:intergenic 45.0%
CAAAACAGGGGAGAACTACT+TGG + chr1_3:6695088-6695107 None:intergenic 45.0%
! CAAGTAGTTCTCCCCTGTTT+TGG - chr1_3:6695086-6695105 Msa0100160:intron 45.0%
CCAAAGAAATGTGAGCCACT+AGG + chr1_3:6695159-6695178 None:intergenic 45.0%
CCTAGTGGCTCACATTTCTT+TGG - chr1_3:6695156-6695175 Msa0100160:intron 45.0%
TGCAGAGGCAAAAACAGAAC+AGG + chr1_3:6695190-6695209 None:intergenic 45.0%
AGACTGAAACTGAAGTGCAG+AGG + chr1_3:6695205-6695224 None:intergenic 45.0%
TCATTCATCCAGCCTTAGCT+TGG + chr1_3:6695247-6695266 None:intergenic 45.0%
! TTCCTCCACTAAGAAGCACA+AGG - chr1_3:6695787-6695806 Msa0100160:intron 45.0%
GAGACAACAGGGTAAAGTGA+AGG + chr1_3:6695832-6695851 None:intergenic 45.0%
!! CAGAGTCTGATCGGTTTTGT+TGG - chr1_3:6696031-6696050 Msa0100160:intron 45.0%
CAACTGTCAGATGCAAGCAA+AGG + chr1_3:6696435-6696454 None:intergenic 45.0%
!! CTTATATGATGACGGTGACG+AGG - chr1_3:6696479-6696498 Msa0100160:intron 45.0%
! AGTTGATGCTGATCCAGATG+TGG - chr1_3:6696542-6696561 Msa0100160:intron 45.0%
GCATCAATGTTCGTAGTTGG+TGG - chr1_3:6696764-6696783 Msa0100160:intron 45.0%
CTGCAACTATGACCACAAGA+GGG + chr1_3:6696795-6696814 None:intergenic 45.0%
GCTACGCAGATATCAGACAA+GGG + chr1_3:6696818-6696837 None:intergenic 45.0%
AGCTACGCAGATATCAGACA+AGG + chr1_3:6696819-6696838 None:intergenic 45.0%
! CATTTTGCCTGACCAATTGG+TGG - chr1_3:6697061-6697080 Msa0100160:intron 45.0%
GAGGATCGTTCTGTGAAAAG+CGG - chr1_3:6697494-6697513 Msa0100160:intron 45.0%
GAAAAGCGGTGGTAAATCTG+AGG - chr1_3:6697508-6697527 Msa0100160:intron 45.0%
GAGGATCGTTCTGTGAAAAG+TGG - chr1_3:6697494-6697513 Msa0100160:intron 45.0%
GATCGTTCTGTGAAAAGTGG+TGG - chr1_3:6697530-6697549 Msa0100160:intron 45.0%
GAAAAGTGGTGGTAAGTCTG+AGG - chr1_3:6697541-6697560 Msa0100160:intron 45.0%
GAGGATCGATCTGTGAAAAG+TGG - chr1_3:6697560-6697579 Msa0100160:intron 45.0%
!!! CTTGGTGGATTTTGTCTTGG+AGG + chr1_3:6697759-6697778 None:intergenic 45.0%
TTTCACCTTGGCAGTACTCT+TGG + chr1_3:6697777-6697796 None:intergenic 45.0%
ACACCAAGTTCTTCAAAGGC+CGG - chr1_3:6697878-6697897 Msa0100160:five_prime_UTR 45.0%
!!! ATTAAAGTATTATTTTTAAA+TGG - chr1_3:6696392-6696411 Msa0100160:intron 5.0%
GGGCGCTCCATAGTGAAAAT+CGG + chr1_3:6688401-6688420 None:intergenic 50.0%
GAGCTTGAAGAGGAGCTTCT+TGG - chr1_3:6688613-6688632 Msa0100160:CDS 50.0%
! ATATGCTGACTACCCAGGGT+TGG - chr1_3:6689161-6689180 Msa0100160:intron 50.0%
!! GATGTCGGCGTTGACTGAAT+AGG - chr1_3:6689183-6689202 Msa0100160:intron 50.0%
CCTCAAAAAAACGCGCGTCT+AGG + chr1_3:6689443-6689462 None:intergenic 50.0%
!!! CCTAGACGCGCGTTTTTTTG+AGG - chr1_3:6689440-6689459 Msa0100160:intron 50.0%
TAAAAAGAGCCGTAGGCACG+TGG - chr1_3:6689612-6689631 Msa0100160:intron 50.0%
ACACGATCTCCGCACCTTTA+AGG - chr1_3:6690001-6690020 Msa0100160:intron 50.0%
TCCATTACAGTTTGGGGGTG+GGG + chr1_3:6690131-6690150 None:intergenic 50.0%
CTCCATTACAGTTTGGGGGT+GGG + chr1_3:6690132-6690151 None:intergenic 50.0%
TCTCCATTACAGTTTGGGGG+TGG + chr1_3:6690133-6690152 None:intergenic 50.0%
TTTCCCGGCCAGTAAATTGC+TGG - chr1_3:6690186-6690205 Msa0100160:intron 50.0%
GAACCAGCAATTTACTGGCC+GGG + chr1_3:6690192-6690211 None:intergenic 50.0%
GGTAGACGCAAGTGCATTTG+TGG - chr1_3:6690299-6690318 Msa0100160:intron 50.0%
! TCCAAACACAAGTGCTGTGG+CGG - chr1_3:6690337-6690356 Msa0100160:intron 50.0%
TGGCGGCACATTGTTTCCAT+GGG - chr1_3:6690354-6690373 Msa0100160:intron 50.0%
TGAGTCTGGGAAGTTAGGGT+AGG - chr1_3:6690436-6690455 Msa0100160:intron 50.0%
ACCCTACCTAACTTCGAGAG+GGG + chr1_3:6690815-6690834 None:intergenic 50.0%
!! TTCGTCGGTGTTGTCCATCT+CGG - chr1_3:6691182-6691201 Msa0100160:intron 50.0%
ATAGTGGTGGTATAGCACGG+CGG + chr1_3:6691237-6691256 None:intergenic 50.0%
!! CCATCATCGTAAGGAGCATC+AGG + chr1_3:6691664-6691683 None:intergenic 50.0%
CCTGATGCTCCTTACGATGA+TGG - chr1_3:6691661-6691680 Msa0100160:intron 50.0%
CAAGCCGATGGTACTCAAAG+AGG - chr1_3:6691841-6691860 Msa0100160:CDS 50.0%
! CAGGTCATGTGTGGTAATGC+TGG - chr1_3:6691893-6691912 Msa0100160:intron 50.0%
! TCGACTTGTACGGTGAGCAT+TGG - chr1_3:6692074-6692093 Msa0100160:CDS 50.0%
! CTCTAGGAGATGTGGAACTC+GGG - chr1_3:6692129-6692148 Msa0100160:CDS 50.0%
TGCATCCAACTAGTCCAACC+AGG + chr1_3:6692600-6692619 None:intergenic 50.0%
GGCTGCTGTCATCATGATTC+AGG - chr1_3:6692884-6692903 Msa0100160:CDS 50.0%
GCCAATTGCTCGAAAGTTGG+GGG - chr1_3:6692914-6692933 Msa0100160:CDS 50.0%
TCCCCCAACTTTCGAGCAAT+TGG + chr1_3:6692918-6692937 None:intergenic 50.0%
CCCAAGTCTGTCATGAGCAA+TGG - chr1_3:6693413-6693432 Msa0100160:intron 50.0%
GCCATTGCTCATGACAGACT+TGG + chr1_3:6693417-6693436 None:intergenic 50.0%
CATGAGCAATGGCATTGCAC+AGG - chr1_3:6693424-6693443 Msa0100160:intron 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_3:6693503-6693522 Msa0100160:intron 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_3:6693503-6693522 Msa0100160:intron 50.0%
CGGGTACTTCTTTCCAGCTT+TGG + chr1_3:6693722-6693741 None:intergenic 50.0%
!! GAAAGAAGTACCCGGAGGAA+AGG - chr1_3:6693728-6693747 Msa0100160:intron 50.0%
TGATTGCTCTCACTTGGGGA+AGG + chr1_3:6693986-6694005 None:intergenic 50.0%
! CGATAGCTCTGCGAAAGAAG+TGG - chr1_3:6694048-6694067 Msa0100160:intron 50.0%
!!! TTTTTTGCCGATGGCCTTGC+TGG + chr1_3:6694130-6694149 None:intergenic 50.0%
GCAAGGCCATCGGCAAAAAA+AGG - chr1_3:6694130-6694149 Msa0100160:intron 50.0%
CACGCAGTTATGGCTGATGT+TGG - chr1_3:6694187-6694206 Msa0100160:intron 50.0%
GATCTTCTGACTGTTGTCCC+AGG - chr1_3:6694746-6694765 Msa0100160:CDS 50.0%
TCTTCTGACTGTTGTCCCAG+GGG - chr1_3:6694748-6694767 Msa0100160:CDS 50.0%
ACACTGAATGCCATGGGTCT+AGG + chr1_3:6694920-6694939 None:intergenic 50.0%
! CTTAGCTTGGCCCAAAATGC+CGG + chr1_3:6695234-6695253 None:intergenic 50.0%
! ATTTTGGGCCAAGCTAAGGC+TGG - chr1_3:6695236-6695255 Msa0100160:intron 50.0%
CTGGCAACACAATCTTCTGC+AGG - chr1_3:6695735-6695754 Msa0100160:intron 50.0%
CACCTTGTGCTTCTTAGTGG+AGG + chr1_3:6695792-6695811 None:intergenic 50.0%
CTGTCAGATGCAAGCAAAGG+CGG + chr1_3:6696432-6696451 None:intergenic 50.0%
TGATGCTGATCCAGATGTGG+TGG - chr1_3:6696545-6696564 Msa0100160:intron 50.0%
GATGCTGATCCAGATGTGGT+GGG - chr1_3:6696546-6696565 Msa0100160:intron 50.0%
! TTGGTGGCATTTCCCTCTTG+TGG - chr1_3:6696780-6696799 Msa0100160:intron 50.0%
GCTGCAACTATGACCACAAG+AGG + chr1_3:6696796-6696815 None:intergenic 50.0%
AATGCAGCCACCAATTGGTC+AGG + chr1_3:6697071-6697090 None:intergenic 50.0%
! GACCAATTGGTGGCTGCATT+TGG - chr1_3:6697071-6697090 Msa0100160:intron 50.0%
CACCAAATGCAGCCACCAAT+TGG + chr1_3:6697076-6697095 None:intergenic 50.0%
GATCGTTCTGTGAAAAGCGG+TGG - chr1_3:6697497-6697516 Msa0100160:intron 50.0%
!! ATCCACCAAGAGTACTGCCA+AGG - chr1_3:6697769-6697788 Msa0100160:five_prime_UTR 50.0%
! CTTCCGGCCTTTGAAGAACT+TGG + chr1_3:6697884-6697903 None:intergenic 50.0%
! GAAGAGGAGCTTCTTGGTGC+TGG - chr1_3:6688619-6688638 Msa0100160:CDS 55.0%
GACTACCCAGGGTTGGATGT+CGG - chr1_3:6689168-6689187 Msa0100160:intron 55.0%
CACGTGTTTGGTTGTGGGGT+AGG + chr1_3:6689562-6689581 None:intergenic 55.0%
TTACAGTTTGGGGGTGGGGT+GGG + chr1_3:6690127-6690146 None:intergenic 55.0%
ATTACAGTTTGGGGGTGGGG+TGG + chr1_3:6690128-6690147 None:intergenic 55.0%
ACCCCACCCCCAAACTGTAA+TGG - chr1_3:6690127-6690146 Msa0100160:intron 55.0%
GTGGCGGCACATTGTTTCCA+TGG - chr1_3:6690353-6690372 Msa0100160:intron 55.0%
CAGCTCACAATGCTCACCCA+TGG + chr1_3:6690373-6690392 None:intergenic 55.0%
! GTGAGCATTGTGAGCTGCAG+CGG - chr1_3:6690376-6690395 Msa0100160:intron 55.0%
CTTCCCAGACTCACCAATCC+AGG + chr1_3:6690429-6690448 None:intergenic 55.0%
CTACCTAACTTCGAGAGGGG+GGG + chr1_3:6690812-6690831 None:intergenic 55.0%
CCTACCTAACTTCGAGAGGG+GGG + chr1_3:6690813-6690832 None:intergenic 55.0%
CCCTACCTAACTTCGAGAGG+GGG + chr1_3:6690814-6690833 None:intergenic 55.0%
CCCCCTCTCGAAGTTAGGTA+GGG - chr1_3:6690811-6690830 Msa0100160:intron 55.0%
CAAATCAGCAGAAGAGCCCG+TGG - chr1_3:6693209-6693228 Msa0100160:intron 55.0%
AGCAATGGCATTGCACAGGC+TGG - chr1_3:6693428-6693447 Msa0100160:intron 55.0%
!! AGCTGGAAAGAAGTACCCGG+AGG - chr1_3:6693723-6693742 Msa0100160:intron 55.0%
GGCCTTGAATCTGACGCTGT+TGG - chr1_3:6693956-6693975 Msa0100160:intron 55.0%
! CGGCATTTTGGGCCAAGCTA+AGG - chr1_3:6695232-6695251 Msa0100160:intron 55.0%
GGAGAGAAACCCACCACATC+TGG + chr1_3:6696558-6696577 None:intergenic 55.0%
TGCTTAGACTTGGCAGCAGC+AGG + chr1_3:6697683-6697702 None:intergenic 55.0%
CACCTTGGCAGTACTCTTGG+TGG + chr1_3:6697774-6697793 None:intergenic 55.0%
TTCTTCAAAGGCCGGAAGCG+AGG - chr1_3:6697886-6697905 Msa0100160:five_prime_UTR 55.0%
TCCACTCTTGACCTCGCTTC+CGG + chr1_3:6697900-6697919 None:intergenic 55.0%
CAACGCCGACATCCAACCCT+GGG + chr1_3:6689176-6689195 None:intergenic 60.0%
TCAACGCCGACATCCAACCC+TGG + chr1_3:6689177-6689196 None:intergenic 60.0%
TACAGTTTGGGGGTGGGGTG+GGG + chr1_3:6690126-6690145 None:intergenic 60.0%
GCCGCCACAGCACTTGTGTT+TGG + chr1_3:6690341-6690360 None:intergenic 60.0%
TTCGAGAGGGGGGGTTGCAA+GGG + chr1_3:6690803-6690822 None:intergenic 60.0%
CAACCCCCCCTCTCGAAGTT+AGG - chr1_3:6690806-6690825 Msa0100160:intron 60.0%
CCCCCCTCTCGAAGTTAGGT+AGG - chr1_3:6690810-6690829 Msa0100160:intron 60.0%
CAGTAGCGGCTATCGCGTAG+TGG + chr1_3:6691316-6691335 None:intergenic 60.0%
ATCAGCAGAAGAGCCCGTGG+AGG - chr1_3:6693212-6693231 Msa0100160:intron 60.0%
AGAAGAGCCCGTGGAGGAGT+CGG - chr1_3:6693218-6693237 Msa0100160:intron 60.0%
TGGGCCATCTTCGCTGAAGC+CGG - chr1_3:6694207-6694226 Msa0100160:intron 60.0%
TCCTCCGGCTTCAGCGAAGA+TGG + chr1_3:6694214-6694233 None:intergenic 60.0%
! CTGAAGAGGAAGCGCACTCC+AGG - chr1_3:6694501-6694520 Msa0100160:CDS 60.0%
GACTTGGCAGCAGCAGGCTT+TGG + chr1_3:6697677-6697696 None:intergenic 60.0%
! TCTAGGGCTGTCGTGGACGC+GGG + chr1_3:6689426-6689445 None:intergenic 65.0%
! GTCTAGGGCTGTCGTGGACG+CGG + chr1_3:6689427-6689446 None:intergenic 65.0%
TTGCCGCAGCCACGTGCCTA+CGG + chr1_3:6689624-6689643 None:intergenic 65.0%
ACAGTTTGGGGGTGGGGTGG+GGG + chr1_3:6690125-6690144 None:intergenic 65.0%
CTTCGAGAGGGGGGGTTGCA+AGG + chr1_3:6690804-6690823 None:intergenic 65.0%
!! ACCTGTGCCGACTCCTCCAC+GGG + chr1_3:6693228-6693247 None:intergenic 65.0%
!! CACCTGTGCCGACTCCTCCA+CGG + chr1_3:6693229-6693248 None:intergenic 65.0%
GCCATCTTCGCTGAAGCCGG+AGG - chr1_3:6694210-6694229 Msa0100160:intron 65.0%
GCCGGAAGCGAGGTCAAGAG+TGG - chr1_3:6697896-6697915 Msa0100160:five_prime_UTR 65.0%
! ACGCGCGTCTAGGGCTGTCG+TGG + chr1_3:6689433-6689452 None:intergenic 70.0%
GAGCCGTAGGCACGTGGCTG+CGG - chr1_3:6689618-6689637 Msa0100160:intron 70.0%
TTTGGGGGTGGGGTGGGGGC+AGG + chr1_3:6690121-6690140 None:intergenic 75.0%
GCCCGTGGAGGAGTCGGCAC+AGG - chr1_3:6693224-6693243 Msa0100160:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 6688391 6697940 6688391 ID=Msa0100160;Name=Msa0100160
chr1_3 mRNA 6688391 6697940 6688391 ID=Msa0100160-mRNA-1;Parent=Msa0100160;Name=Msa0100160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=204|0.76|0.66|1|0.70|0.72|18|0|915
chr1_3 exon 6688391 6688970 6688391 ID=Msa0100160-mRNA-1:exon:2554;Parent=Msa0100160-mRNA-1
chr1_3 exon 6689046 6689117 6689046 ID=Msa0100160-mRNA-1:exon:2553;Parent=Msa0100160-mRNA-1
chr1_3 exon 6689644 6689687 6689644 ID=Msa0100160-mRNA-1:exon:2552;Parent=Msa0100160-mRNA-1
chr1_3 exon 6689768 6689854 6689768 ID=Msa0100160-mRNA-1:exon:2551;Parent=Msa0100160-mRNA-1
chr1_3 exon 6690523 6690574 6690523 ID=Msa0100160-mRNA-1:exon:2550;Parent=Msa0100160-mRNA-1
chr1_3 exon 6691490 6691563 6691490 ID=Msa0100160-mRNA-1:exon:2549;Parent=Msa0100160-mRNA-1
chr1_3 exon 6691798 6691905 6691798 ID=Msa0100160-mRNA-1:exon:2548;Parent=Msa0100160-mRNA-1
chr1_3 exon 6692022 6692237 6692022 ID=Msa0100160-mRNA-1:exon:2547;Parent=Msa0100160-mRNA-1
chr1_3 exon 6692265 6692437 6692265 ID=Msa0100160-mRNA-1:exon:2546;Parent=Msa0100160-mRNA-1
chr1_3 exon 6692450 6692677 6692450 ID=Msa0100160-mRNA-1:exon:2545;Parent=Msa0100160-mRNA-1
chr1_3 exon 6692705 6692806 6692705 ID=Msa0100160-mRNA-1:exon:2544;Parent=Msa0100160-mRNA-1
chr1_3 exon 6692834 6692984 6692834 ID=Msa0100160-mRNA-1:exon:2543;Parent=Msa0100160-mRNA-1
chr1_3 exon 6693086 6693133 6693086 ID=Msa0100160-mRNA-1:exon:2542;Parent=Msa0100160-mRNA-1
chr1_3 exon 6693228 6693425 6693228 ID=Msa0100160-mRNA-1:exon:2541;Parent=Msa0100160-mRNA-1
chr1_3 exon 6693540 6693666 6693540 ID=Msa0100160-mRNA-1:exon:2540;Parent=Msa0100160-mRNA-1
chr1_3 exon 6694358 6694539 6694358 ID=Msa0100160-mRNA-1:exon:2539;Parent=Msa0100160-mRNA-1
chr1_3 exon 6694638 6694841 6694638 ID=Msa0100160-mRNA-1:exon:2538;Parent=Msa0100160-mRNA-1
chr1_3 exon 6697635 6697940 6697635 ID=Msa0100160-mRNA-1:exon:2537;Parent=Msa0100160-mRNA-1
chr1_3 five_prime_UTR 6697737 6697940 6697737 ID=Msa0100160-mRNA-1:five_prime_utr;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6697635 6697736 6697635 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6694638 6694841 6694638 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6694358 6694539 6694358 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6693540 6693666 6693540 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6693228 6693425 6693228 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6693086 6693133 6693086 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6692834 6692984 6692834 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6692705 6692806 6692705 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6692450 6692677 6692450 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6692265 6692437 6692265 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6692022 6692237 6692022 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6691798 6691905 6691798 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6691490 6691563 6691490 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6690523 6690574 6690523 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6689768 6689854 6689768 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6689644 6689687 6689644 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6689046 6689117 6689046 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
chr1_3 CDS 6688391 6688970 6688391 ID=Msa0100160-mRNA-1:cds;Parent=Msa0100160-mRNA-1
Gene Sequence

>Msa0100160

ATGGCTTCCATCGATAAGGAGCTTGAAGAGGAGCTTCTTGGTGCTGGTAACAAGCTTCTAGATCCTCCTTCTTCTGTGGATAATCTGCTTGATATCCTGATTCAAATTGAAAGCTGCCTATCAAGGATTGAACAATCACCTTCTGAATCTATGCTAAATGCACTGTCTCCATCATTGAAAGCATTAATTGCTGATAAACTTTTAAAGCATTCAGACGTCGACGTCAAAGTTGCTCTTGCCTCCTGCTTCAGTGAGATAACAAGAATCACTGCACCTGATGCTCCTTACGATGATGGTCAAATGAAGGAGGTCTTTAGGTTAATTGTATCTTCATTTGAAAATCTACATGATAAGTCAAGCCGATGGTACTCAAAGAGGACTTTAATCCTTGAAACAGTTGCAAAAGTCAGGTCATGTGTGGTAATGCTGGATCTTGAATGCGATGCCCTCATTTTGGAGATGTTTCAGCATTTCTTGAAGACAATAAGGGAACATCATGCAGAAAATGTTTTCTCGTCCATGGAAACTATAATGATCCTCTGTCTTGAAGAAAGTGAAGAAATATCTCATGAGTTACTCTCACCAATCTTAGATAGTGTAAAAAAAGACAATGAGGAGGTTTTGCCAATTGCTCGAAAGTTGGGGGAAAGAGTCCTTGAAAGTTGTGCAACAAGGCTTAAACCCAATTTATTGCAAGCTGTGAATACCTTGGGTATTTCTTTGGATGATTATAGTGATGTTCTTGCCTCAATATGCAAAGAGACATCAGATAACTTGGCGCAAAATGATGTATGTGCTACTAGTGGTCATATGGTACATGATCGCAAATCAGCAGAAGAGCCCGTGGAGGAGTCGGCACAGGTGGATAGTGAGATTACAAAAGAAGCCACACCACCACAACAAGATAATGCTGCTGGAGAAAGATCTCCCAAGTCTGTCATGAGCAATGGCATTGCACAGGCTGGTGAAGATGATACTTTAGATGTTTCAAAGTCCCTTAAGAATCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTGAAGATCCAAAGCTGGAAAGAAGTACCATCAAGAAGCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTAAAGAACCAAAGCTGGAAAGAAGTACCCGGAGGAAAGGAAAGAAAGCTAGCTCTTCAAAGTCGACCAAACCTTCTAAGAAATCAAATGTTGTCAGTGAGAAGGAAGCTGAGAAAACAATTGACTCTAAAAGTTCCAAAAAAGAAGTTCCTATTTCTCTTAATGAGGATACTACCGGAACTTCAGAGAATGACAAAGAGATTAAAGCTAAGATTTCATCATCTAAAGCAGGTGGCCTTGAATCTGACGCTGTTGGTTCTCCTTCCCCAAGTGAGAGCAATCACGATGAGAATCGTTCTAAGAAACGTGCACGAACAAAAAAGAACGATAGCTCTGCGAAAGAAGTGTCTGAAGGAACATCGGATTCTAAAGTAAAACCAGCAAGGCCATCGGCAAAAAAAGGACCCATTCGTAGCTCTGATGTGAAAACTGTTGTACACGCAGTTATGGCTGATGTTGGGCCATCTTCGCTGAAGCCGGAGGACAAGAAAAAGAAGACACATGTGAAAGGTAGCTCAGAAAAGGGTCTAGCAAAATCTTCTGCTGAAGATGAGGATAAGGTAATGGTATCTTCACTTAAGTCAGCTACGAAAACAACCAAAGATGAACATTCAGAGGAGACTCCTAAGACAACTCTGAAGAGGAAGCGCACTCCAGGAAAAGAAAAAGGGTCTGATATCAAGAAAAATGAGCAAAGTCTTGTTGGAAAACGAGTGAAAGTTTGGTGGCCAGATGATAATATGTTTTATAAAGGTGTTGTTGATTCTTTTGATTCCTCCACTAAGAAGCACAAGGTCTTATATGATGACGGTGACGAGGAAATATTGAATTTCAAAGAGGAGAAATATGAAATTGTTGAAGTTGATGCTGATCCAGATGTGGAAGAAGGAAGTCATCGAGCAAGCCCTGAACCTTCTGCTGATATGCCGCTAAAAAAGAAAGGGAAAACAAATGCTGGTGAATCAAAAAAGGAAGTAAAGAAGGAATCTTCTAAAAGTGGAGGAGCAACATCGAGTAAATCAAAGACACCATCTGCAAAGTCTACCCAAAAGTCCAAGATTGTTGGCAAATCTGATGGTGAAGTTAGTAAAAAATCTAAGGATTCTGCACAAAAAACTGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGCGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGTGGTGGTAAGTCTGAGGATCGATCTGTGAAAAGTGGCAGCAAATCTGTTGATTCTGCACAAAAAAACAATTCCAAGAAGACTGATGGTTCCAAAACAAAGAAATCCAAAGATGATGATGTTGAAACACCAAAGCCTGCTGCTGCCAAGTCTAAGCAAGAAACTCTGAAAAGTGGAAAATCCAAGCAAGGAACACCTAAGATTGCATCTTCCTCCAAGACAAAATCCACCAAGAGTACTGCCAAGGTGAAATTTAATTTGCTGCAGGAAGAAGATTCTGAAAATGAGAACTCTGATGATTCATCAAAAGAGGTTGAAGTCGCAAAGGTTAAGACACCAAGTTCTTCAAAGGCCGGAAGCGAGGTCAAGAGTGGAAAGAAGCGATCAAGAAACTAG
Protein sequence

>Msa0100160

MASIDKELEEELLGAGNKLLDPPSSVDNLLDILIQIESCLSRIEQSPSESMLNALSPSLKALIADKLLKHSDVDVKVALASCFSEITRITAPDAPYDDGQMKEVFRLIVSSFENLHDKSSRWYSKRTLILETVAKVRSCVVMLDLECDALILEMFQHFLKTIREHHAENVFSSMETIMILCLEESEEISHELLSPILDSVKKDNEEVLPIARKLGERVLESCATRLKPNLLQAVNTLGISLDDYSDVLASICKETSDNLAQNDVCATSGHMVHDRKSAEEPVEESAQVDSEITKEATPPQQDNAAGERSPKSVMSNGIAQAGEDDTLDVSKSLKNQDGNNLSGNDERDDMDTEKIDSEDPKLERSTIKKQDGNNLSGNDERDDMDTEKIDSKEPKLERSTRRKGKKASSSKSTKPSKKSNVVSEKEAEKTIDSKSSKKEVPISLNEDTTGTSENDKEIKAKISSSKAGGLESDAVGSPSPSESNHDENRSKKRARTKKNDSSAKEVSEGTSDSKVKPARPSAKKGPIRSSDVKTVVHAVMADVGPSSLKPEDKKKKTHVKGSSEKGLAKSSAEDEDKVMVSSLKSATKTTKDEHSEETPKTTLKRKRTPGKEKGSDIKKNEQSLVGKRVKVWWPDDNMFYKGVVDSFDSSTKKHKVLYDDGDEEILNFKEEKYEIVEVDADPDVEEGSHRASPEPSADMPLKKKGKTNAGESKKEVKKESSKSGGATSSKSKTPSAKSTQKSKIVGKSDGEVSKKSKDSAQKTGGKSEDRSVKSGGKSEDRSVKSGGKSEDRSVKSGSKSVDSAQKNNSKKTDGSKTKKSKDDDVETPKPAAAKSKQETLKSGKSKQGTPKIASSSKTKSTKSTAKVKFNLLQEEDSENENSDDSSKEVEVAKVKTPSSSKAGSEVKSGKKRSRN*