AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249490 MtrunA17_Chr2g0304951 93.587 421 21 1 4 424 6 420 0.0 771
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249490 AT2G22650.1 57.664 411 157 3 21 418 10 416 3.19e-163 466
Msa0249490 AT2G22650.2 59.459 296 115 2 124 418 3 294 3.04e-128 372
Msa0249490 AT2G22650.3 59.459 296 115 2 124 418 3 294 3.04e-128 372

Find 128 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGGTGCTTCTGGAATTTC+TGG 0.121841 2_2:+36220139 Msa0249490:CDS
GCACCCTAACCATACAATTT+TGG 0.138991 2_2:+36219764 Msa0249490:CDS
TGGAATTACTTCTTCATTAC+AGG 0.181074 2_2:-36224440 None:intergenic
TTTCCTCGCATGTGAAAATT+TGG 0.199682 2_2:+36220852 Msa0249490:CDS
AGTTGTAAGTATTGGTTATT+TGG 0.214020 2_2:+36224349 Msa0249490:CDS
AATATGCTTCCTGAGATTTC+TGG 0.214703 2_2:+36223755 Msa0249490:CDS
ACATGGATCGCTTCCACTTC+TGG 0.214988 2_2:+36224294 Msa0249490:CDS
AGCAATTGTGAAAAGGTTTA+TGG 0.221013 2_2:-36220313 None:intergenic
ATTCATTTATACGATGAATT+TGG 0.221998 2_2:+36220109 Msa0249490:CDS
TTCCATCTGAGTTGACTTCT+TGG 0.232892 2_2:+36224458 Msa0249490:CDS
ATCCTTTATTCCAGGATAAA+TGG 0.233300 2_2:-36224218 None:intergenic
CTCATGTAGTTAAGCCTCTA+TGG 0.253889 2_2:+36220265 Msa0249490:intron
AATCCATGCATCTGATAATA+TGG 0.287035 2_2:-36224068 None:intergenic
ATAACCAATACTTACAACTA+TGG 0.303357 2_2:-36224345 None:intergenic
AATCATCCAGTCTTAACTTT+GGG 0.313272 2_2:+36220881 Msa0249490:CDS
AGACATTACATCATTCAATT+TGG 0.317086 2_2:-36220504 None:intergenic
GGTATTGGTGGCGGTGCTTC+TGG 0.323226 2_2:+36220130 Msa0249490:CDS
TCGACCAAAGACGACAAGTA+TGG 0.327447 2_2:-36219682 None:intergenic
TTACCCATACTTGTCGTCTT+TGG 0.328060 2_2:+36219678 Msa0249490:five_prime_UTR
GGCCATTTATCCTGGAATAA+AGG 0.342754 2_2:+36224216 Msa0249490:CDS
TTCTCCAGGTTCGCTGTCCT+TGG 0.360662 2_2:+36219922 Msa0249490:intron
CATGGATCGCTTCCACTTCT+GGG 0.364062 2_2:+36224295 Msa0249490:CDS
GTCCTTGGCGCTGGTTTCGC+TGG 0.365442 2_2:+36219937 Msa0249490:CDS
TCGCTGGACTTTCCGTCGTT+TGG 0.365720 2_2:+36219953 Msa0249490:CDS
AGGTTCGCTGTCCTTGGCGC+TGG 0.373567 2_2:+36219928 Msa0249490:intron
AAACTTTACCTCGTATAATC+AGG 0.374838 2_2:-36223827 None:intergenic
AGATGCATGGATTTCTGTTC+AGG 0.375339 2_2:+36224078 Msa0249490:CDS
GGGCCCAAAATTGTATGGTT+AGG 0.390106 2_2:-36219768 None:intergenic
CATGGACTTTCTGAGTTTGA+AGG 0.392483 2_2:+36220937 Msa0249490:CDS
GTCTAAATGTTGGGTCAACT+TGG 0.393363 2_2:+36224110 Msa0249490:CDS
TTATACGATGAATTTGGTAT+TGG 0.402633 2_2:+36220115 Msa0249490:CDS
TACGATGAATTTGGTATTGG+TGG 0.407747 2_2:+36220118 Msa0249490:CDS
GAATCATCCAGTCTTAACTT+TGG 0.415493 2_2:+36220880 Msa0249490:CDS
ATATGCTTCCTGAGATTTCT+GGG 0.417682 2_2:+36223756 Msa0249490:CDS
TATTGGTTATTTGGAGGGCT+AGG 0.424416 2_2:+36224358 Msa0249490:CDS
GGTTGTATTAATGATTTCAT+TGG 0.430896 2_2:+36224316 Msa0249490:CDS
TCAAGAGGATTGTTATATCA+TGG 0.430914 2_2:+36224382 Msa0249490:CDS
TTTATCCTGGAATAAAGGAT+TGG 0.431902 2_2:+36224221 Msa0249490:CDS
CTTCATCCTTATTCCCCAAA+AGG 0.435989 2_2:+36220169 Msa0249490:CDS
GGATAAATGGCCGATGCCTT+CGG 0.437767 2_2:-36224205 None:intergenic
ATATTTATGTTCAACTCCTT+AGG 0.439809 2_2:-36220088 None:intergenic
CTTGTTGAGCAATTGTGAAA+AGG 0.441876 2_2:-36220320 None:intergenic
GGCCCAAAATTGTATGGTTA+GGG 0.443413 2_2:-36219767 None:intergenic
AAGGCATCGGCCATTTATCC+TGG 0.448102 2_2:+36224208 Msa0249490:CDS
TGGTGAGTTAGAGAAGAAGA+AGG 0.453367 2_2:-36219813 None:intergenic
AAAACCCAATCCTTTATTCC+AGG 0.454042 2_2:-36224226 None:intergenic
TGGTTGGCTAGGTAGTTTGA+TGG 0.454075 2_2:+36224402 Msa0249490:CDS
GAAACCATAGTTGTAAGTAT+TGG 0.454184 2_2:+36224341 Msa0249490:CDS
TTATCCTGGAATAAAGGATT+GGG 0.454396 2_2:+36224222 Msa0249490:CDS
TTCAGGTGTTATCCTGAGCA+TGG 0.462007 2_2:+36224040 Msa0249490:intron
TCAGCTCCTGCCGAAGGCAT+CGG 0.482751 2_2:+36224195 Msa0249490:CDS
CTCAGGAAGCATATTCACTT+TGG 0.488224 2_2:-36223747 None:intergenic
CGTCGTTTGGCATTTGCTCA+AGG 0.488303 2_2:+36219966 Msa0249490:CDS
TGTAAGTATTGGTTATTTGG+AGG 0.491795 2_2:+36224352 Msa0249490:CDS
GGTGAGTTAGAGAAGAAGAA+GGG 0.491920 2_2:-36219812 None:intergenic
GATGCATGGATTTCTGTTCA+GGG 0.493865 2_2:+36224079 Msa0249490:CDS
TGTTGTGAATTGAACGGCGG+GGG 0.494877 2_2:-36219788 None:intergenic
ATAAAGAAAGCTGTGTCAAA+TGG 0.495270 2_2:-36220694 None:intergenic
GTAAGTATTGGTTATTTGGA+GGG 0.498936 2_2:+36224353 Msa0249490:CDS
TTTCTCCCCAAAGTTAAGAC+TGG 0.500112 2_2:-36220887 None:intergenic
ATAGTCTTGATATCCATTGC+CGG 0.502682 2_2:-36220479 None:intergenic
TTCCAAGAAGTCAACTCAGA+TGG 0.506832 2_2:-36224460 None:intergenic
TTTGTACTCTGCAGCAAGGA+AGG 0.510257 2_2:-36220624 None:intergenic
GCAGCAAGGAAGGGAAGTCT+TGG 0.512650 2_2:-36220614 None:intergenic
CGACCAAAGACGACAAGTAT+GGG 0.516489 2_2:-36219681 None:intergenic
GGCTCCCGCAGTCTAAATGT+TGG 0.516611 2_2:+36224100 Msa0249490:CDS
GAGGATTGTTATATCATGGT+TGG 0.516934 2_2:+36224386 Msa0249490:CDS
GGGCATCTTACGACCGGCAA+TGG 0.516999 2_2:+36220466 Msa0249490:CDS
GCTCCCGCAGTCTAAATGTT+GGG 0.519128 2_2:+36224101 Msa0249490:CDS
TTGTTATATCATGGTTGGCT+AGG 0.521087 2_2:+36224391 Msa0249490:CDS
CTTCCATATTATCAGATGCA+TGG 0.523672 2_2:+36224065 Msa0249490:CDS
TAACTCACCAACATCCTCTC+AGG 0.528647 2_2:+36219826 Msa0249490:CDS
GGAAGCCTCCCAGAAATCTC+AGG 0.533218 2_2:-36223764 None:intergenic
AAATGGCCGATGCCTTCGGC+AGG 0.533827 2_2:-36224201 None:intergenic
CTTCAAACTCAGAAAGTCCA+TGG 0.536235 2_2:-36220936 None:intergenic
ACGACAAGTATGGGTAATTG+TGG 0.540907 2_2:-36219672 None:intergenic
TGACCCAACATTTAGACTGC+GGG 0.542533 2_2:-36224104 None:intergenic
AATATGGAAGGTCCATGCTC+AGG 0.543184 2_2:-36224052 None:intergenic
GTTGTTGTGAATTGAACGGC+GGG 0.547053 2_2:-36219790 None:intergenic
CAGAGGTGTAATTGTTCACA+TGG 0.552618 2_2:+36223799 Msa0249490:CDS
CACTGAGCACCCTCCCATAG+AGG 0.553018 2_2:-36220279 None:intergenic
TATGGGAGGGTGCTCAGTGT+TGG 0.556559 2_2:+36220283 Msa0249490:CDS
ATCATCCAGTCTTAACTTTG+GGG 0.565210 2_2:+36220882 Msa0249490:CDS
GGATTGATATTTAGAGCTTG+AGG 0.567375 2_2:-36220718 None:intergenic
TCATGTAGTTAAGCCTCTAT+GGG 0.568056 2_2:+36220266 Msa0249490:intron
TGCATTGCAGCAAAGTCCTA+AGG 0.572741 2_2:+36220072 Msa0249490:intron
CGGAGCAAAAGCTGGTCTGA+GGG 0.572949 2_2:+36224252 Msa0249490:CDS
TTTGGAGGGCTAGGTTCAAG+AGG 0.575603 2_2:+36224367 Msa0249490:CDS
ATGTTGGGTCAACTTGGGAG+TGG 0.575664 2_2:+36224116 Msa0249490:CDS
AGCGATCCATGTGGCGTGAG+TGG 0.578662 2_2:-36224283 None:intergenic
GTCCAGCGAAACCAGCGCCA+AGG 0.580750 2_2:-36219939 None:intergenic
TCTTCATCAGCTCCTGCCGA+AGG 0.586197 2_2:+36224189 Msa0249490:CDS
ACACCTCTGCATGTTCTCAA+AGG 0.589315 2_2:-36223785 None:intergenic
CCGGAGCAAAAGCTGGTCTG+AGG 0.589668 2_2:+36224251 Msa0249490:CDS
TCATTAATACAACCCAGAAG+TGG 0.592302 2_2:-36224307 None:intergenic
ACCAGGTAAAAGAGTTTGAG+CGG 0.596373 2_2:-36220662 None:intergenic
GATCCATGTGGCGTGAGTGG+AGG 0.596844 2_2:-36224280 None:intergenic
TCTAAATGTTGGGTCAACTT+GGG 0.597738 2_2:+36224111 Msa0249490:CDS
GCATATTCACTTTGGCACCA+AGG 0.598392 2_2:-36223739 None:intergenic
ATGCCTCCACTCACGCCACA+TGG 0.599791 2_2:+36224277 Msa0249490:CDS
GATGAATTTGGTATTGGTGG+CGG 0.605775 2_2:+36220121 Msa0249490:CDS
CATGCATCTGATAATATGGA+AGG 0.608929 2_2:-36224064 None:intergenic
TACCTTACCTGAGAGGATGT+TGG 0.610120 2_2:-36219833 None:intergenic
GGTGCTTCTGGAATTTCTGG+AGG 0.610343 2_2:+36220142 Msa0249490:CDS
AAGGGTTGTTGTGAATTGAA+CGG 0.614043 2_2:-36219794 None:intergenic
AAAATTGTATGGTTAGGGTG+CGG 0.622757 2_2:-36219762 None:intergenic
TGTAGTTAAGCCTCTATGGG+AGG 0.625577 2_2:+36220269 Msa0249490:intron
TTGTACTCTGCAGCAAGGAA+GGG 0.627247 2_2:-36220623 None:intergenic
AGTGTTTGTACTCTGCAGCA+AGG 0.630404 2_2:-36220628 None:intergenic
GTAGTTAAGCCTCTATGGGA+GGG 0.631582 2_2:+36220270 Msa0249490:intron
ATTGTATGGTTAGGGTGCGG+AGG 0.634999 2_2:-36219759 None:intergenic
CTTCAGGGGCATCTTACGAC+CGG 0.641001 2_2:+36220460 Msa0249490:intron
GATGCAGTCATCATATGCCT+TGG 0.642709 2_2:+36223722 Msa0249490:CDS
ACTTGTCGTCTTTGGTCGAG+CGG 0.648952 2_2:+36219686 Msa0249490:five_prime_UTR
TCAAATGGTAAACAAAGACC+AGG 0.649134 2_2:-36220679 None:intergenic
CTTTACCTCGTATAATCAGG+CGG 0.650780 2_2:-36223824 None:intergenic
AAGAAGTTACCTTACCTGAG+AGG 0.656063 2_2:-36219840 None:intergenic
ACATACCCCATAGACAGAGA+AGG 0.659552 2_2:+36219713 Msa0249490:five_prime_UTR
TTGACCCAACATTTAGACTG+CGG 0.672778 2_2:-36224105 None:intergenic
CTTCCTTTGAGAACATGCAG+AGG 0.679214 2_2:+36223782 Msa0249490:CDS
CAATCCTCGACACTACCTTG+AGG 0.684671 2_2:+36220735 Msa0249490:CDS
GGTTGTTGTGAATTGAACGG+CGG 0.692482 2_2:-36219791 None:intergenic
GAAACCTCAAGGTAGTGTCG+AGG 0.694925 2_2:-36220739 None:intergenic
CTTGAGCAAATGCCAAACGA+CGG 0.697609 2_2:-36219965 None:intergenic
TGCTTCCTGAGATTTCTGGG+AGG 0.708278 2_2:+36223759 Msa0249490:CDS
TGGAACCGCCTGATTATACG+AGG 0.743531 2_2:+36223819 Msa0249490:CDS
TTGTTGTGAATTGAACGGCG+GGG 0.748951 2_2:-36219789 None:intergenic
AGAAGTGGAAGCGATCCATG+TGG 0.754617 2_2:-36224292 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATATTATATTATTATT+AGG + chr2_2:36220825-36220844 Msa0249490:intron 0.0%
!!! ACAATTGAATTTTAAAATTT+GGG - chr2_2:36224496-36224515 None:intergenic 10.0%
!!! AAATAAAAAAACCTTTTATG+AGG - chr2_2:36220375-36220394 None:intergenic 15.0%
!! GAAAAATAAAAAATTAGTGA+TGG - chr2_2:36220764-36220783 None:intergenic 15.0%
!! AAATTAGTGGAATTAAAATT+TGG + chr2_2:36221232-36221251 Msa0249490:intron 15.0%
!! AATTAGTGGAATTAAAATTT+GGG + chr2_2:36221233-36221252 Msa0249490:intron 15.0%
!! CAAATTAATAGTAATTACAA+TGG + chr2_2:36222339-36222358 Msa0249490:intron 15.0%
!! TTTATGTGTTGTAATATATA+AGG - chr2_2:36222433-36222452 None:intergenic 15.0%
!!! GACAATTGAATTTTAAAATT+TGG - chr2_2:36224497-36224516 None:intergenic 15.0%
!! ATTCATTTATACGATGAATT+TGG + chr2_2:36220109-36220128 Msa0249490:CDS 20.0%
!! TACAAAAGCTAATTATGAAA+AGG + chr2_2:36221715-36221734 Msa0249490:intron 20.0%
!! TGTAATATATAAGGAAGTTA+TGG - chr2_2:36222424-36222443 None:intergenic 20.0%
!! AATTAGTGAGATTAGAATAA+GGG + chr2_2:36222906-36222925 Msa0249490:intron 20.0%
!! TATAGAAACTGAATCAAAAA+AGG - chr2_2:36222978-36222997 None:intergenic 20.0%
!! TTTGATTCAAGTATTCATAT+TGG + chr2_2:36223020-36223039 Msa0249490:intron 20.0%
!!! TCTTTGTTTTCTTTATAGTT+TGG - chr2_2:36223175-36223194 None:intergenic 20.0%
! TGAAATGAGTAAAGAAGAAA+AGG - chr2_2:36219872-36219891 None:intergenic 25.0%
! CAAGGTTATTATGTTAGTTA+GGG - chr2_2:36220054-36220073 None:intergenic 25.0%
! ATATTTATGTTCAACTCCTT+AGG - chr2_2:36220091-36220110 None:intergenic 25.0%
! TTATACGATGAATTTGGTAT+TGG + chr2_2:36220115-36220134 Msa0249490:CDS 25.0%
! AGACATTACATCATTCAATT+TGG - chr2_2:36220507-36220526 None:intergenic 25.0%
! TTCATACATTTCACAAGTAT+TGG + chr2_2:36220532-36220551 Msa0249490:intron 25.0%
! TTACACAAAAAATCTATCCA+TGG + chr2_2:36220919-36220938 Msa0249490:CDS 25.0%
! AAAGTTTCCTTTAAATTGAG+CGG + chr2_2:36221032-36221051 Msa0249490:intron 25.0%
!! ATATTGAGTTGCCTATAAAT+TGG + chr2_2:36221184-36221203 Msa0249490:intron 25.0%
! TAATTGAATGTATAAATCCC+TGG - chr2_2:36221290-36221309 None:intergenic 25.0%
! AAAAAAAAAAAACCCTTTCC+TGG + chr2_2:36221314-36221333 Msa0249490:intron 25.0%
!!! TGAAGACATTGCATTTTTTT+GGG + chr2_2:36221475-36221494 Msa0249490:intron 25.0%
!!! GATAAACTTCATGTTTTGTT+CGG - chr2_2:36221626-36221645 None:intergenic 25.0%
! CAAATATAAGGTTACATAGA+CGG + chr2_2:36222096-36222115 Msa0249490:intron 25.0%
! TATTATATGTCGACAGTTAT+GGG - chr2_2:36222477-36222496 None:intergenic 25.0%
! TTATTATATGTCGACAGTTA+TGG - chr2_2:36222478-36222497 None:intergenic 25.0%
! TGATATGACTTAGATAACAA+AGG + chr2_2:36222683-36222702 Msa0249490:intron 25.0%
! AGAACAAAAACATAGGAATA+GGG + chr2_2:36222730-36222749 Msa0249490:intron 25.0%
!! TTTCTAAAAAGAAGCAATAG+AGG + chr2_2:36222760-36222779 Msa0249490:intron 25.0%
! TAACAATAACCAACAAAGTA+AGG - chr2_2:36222797-36222816 None:intergenic 25.0%
!! TTACTTTGTTGGTTATTGTT+AGG + chr2_2:36222796-36222815 Msa0249490:intron 25.0%
! CAATTAGTGAGATTAGAATA+AGG + chr2_2:36222905-36222924 Msa0249490:intron 25.0%
! TATTCATATTGGCAAAATGA+AGG + chr2_2:36223031-36223050 Msa0249490:intron 25.0%
! AGTAGATTTACTTCAAGTAA+CGG - chr2_2:36223198-36223217 None:intergenic 25.0%
! GAAGTAAATCTACTTAAAGA+TGG + chr2_2:36223204-36223223 Msa0249490:intron 25.0%
! AAATCTACTTAAAGATGGAT+AGG + chr2_2:36223209-36223228 Msa0249490:intron 25.0%
! CTCTCCTATATTGTATATTA+CGG + chr2_2:36223552-36223571 Msa0249490:intron 25.0%
! TCTCCTATATTGTATATTAC+GGG + chr2_2:36223553-36223572 Msa0249490:intron 25.0%
! TCACTAGTATGAAAAATGAT+AGG - chr2_2:36223579-36223598 None:intergenic 25.0%
!! TTAAATATCTTTCAAGTCTC+AGG + chr2_2:36223692-36223711 Msa0249490:intron 25.0%
!! TAAATATCTTTCAAGTCTCA+GGG + chr2_2:36223693-36223712 Msa0249490:intron 25.0%
! AATCTGAAAAATCTCTAGTT+TGG + chr2_2:36223876-36223895 Msa0249490:intron 25.0%
! ACAATACTCTTGAAGTAATA+AGG - chr2_2:36223934-36223953 None:intergenic 25.0%
! TAGCTTAGTTTACTAAAAGA+AGG - chr2_2:36223971-36223990 None:intergenic 25.0%
!!! GTGCTAGATAATTCTAAAAT+GGG - chr2_2:36224015-36224034 None:intergenic 25.0%
!! AGTGCTAGATAATTCTAAAA+TGG - chr2_2:36224016-36224035 None:intergenic 25.0%
! GGTTGTATTAATGATTTCAT+TGG + chr2_2:36224316-36224335 Msa0249490:CDS 25.0%
! ATAACCAATACTTACAACTA+TGG - chr2_2:36224348-36224367 None:intergenic 25.0%
!!! AGTTGTAAGTATTGGTTATT+TGG + chr2_2:36224349-36224368 Msa0249490:CDS 25.0%
!!! TTTTTTCCTTCTCTGTCTAT+GGG - chr2_2:36219722-36219741 None:intergenic 30.0%
!!! TTTTTTTCCTTCTCTGTCTA+TGG - chr2_2:36219723-36219742 None:intergenic 30.0%
TTGAATTGAATGAAGAACGT+AGG - chr2_2:36220008-36220027 None:intergenic 30.0%
GCAAGGTTATTATGTTAGTT+AGG - chr2_2:36220055-36220074 None:intergenic 30.0%
! AGAAATGTATGTACCTTTTG+GGG - chr2_2:36220185-36220204 None:intergenic 30.0%
! GAGAAATGTATGTACCTTTT+GGG - chr2_2:36220186-36220205 None:intergenic 30.0%
! TGAGAAATGTATGTACCTTT+TGG - chr2_2:36220187-36220206 None:intergenic 30.0%
AGCAATTGTGAAAAGGTTTA+TGG - chr2_2:36220316-36220335 None:intergenic 30.0%
! TTTTATGAGGAAGAAAAGGT+TGG - chr2_2:36220362-36220381 None:intergenic 30.0%
! AACCTTTTCTTCCTCATAAA+AGG + chr2_2:36220361-36220380 Msa0249490:CDS 30.0%
! AACCTTTTATGAGGAAGAAA+AGG - chr2_2:36220366-36220385 None:intergenic 30.0%
GATTGGAATGAATGTGAAAA+AGG - chr2_2:36220408-36220427 None:intergenic 30.0%
ATAAAGAAAGCTGTGTCAAA+TGG - chr2_2:36220697-36220716 None:intergenic 30.0%
AATCATCCAGTCTTAACTTT+GGG + chr2_2:36220881-36220900 Msa0249490:CDS 30.0%
! AATAGTTGTACCAGTGTTTT+GGG + chr2_2:36221153-36221172 Msa0249490:intron 30.0%
AGTTGCCTATAAATTGGAAT+AGG + chr2_2:36221190-36221209 Msa0249490:intron 30.0%
GTTGCCTATAAATTGGAATA+GGG + chr2_2:36221191-36221210 Msa0249490:intron 30.0%
GAATCCCTATTCCAATTTAT+AGG - chr2_2:36221198-36221217 None:intergenic 30.0%
AATTGGAATAGGGATTCTTA+TGG + chr2_2:36221201-36221220 Msa0249490:intron 30.0%
! GAACGATGAAAAGATTTGTT+AGG + chr2_2:36221410-36221429 Msa0249490:intron 30.0%
TAAACTGATCATCCACTAAT+AGG - chr2_2:36221444-36221463 None:intergenic 30.0%
!!! CTGAAGACATTGCATTTTTT+TGG + chr2_2:36221474-36221493 Msa0249490:intron 30.0%
!!! GAAGACATTGCATTTTTTTG+GGG + chr2_2:36221476-36221495 Msa0249490:intron 30.0%
!!! AAGACATTGCATTTTTTTGG+GGG + chr2_2:36221477-36221496 Msa0249490:intron 30.0%
AAGTTTATCTTCATGCTTCT+AGG + chr2_2:36221637-36221656 Msa0249490:intron 30.0%
ATTATGAAAAGGAGCAAGAA+TGG + chr2_2:36221726-36221745 Msa0249490:intron 30.0%
!!! ATGTTTTTTCATCCTACTTC+TGG - chr2_2:36221773-36221792 None:intergenic 30.0%
!! CTCTTCGTTGTTTTCTTATT+TGG - chr2_2:36221819-36221838 None:intergenic 30.0%
CAAATAAGAAAACAACGAAG+AGG + chr2_2:36221817-36221836 Msa0249490:intron 30.0%
! AGATTGCAAAGATCATTTTG+CGG + chr2_2:36221895-36221914 Msa0249490:intron 30.0%
AGTTGAGAAGAATAATTTCC+TGG + chr2_2:36222023-36222042 Msa0249490:intron 30.0%
CGTCTATGTAACCTTATATT+TGG - chr2_2:36222098-36222117 None:intergenic 30.0%
TATAAGGAAGTTATGGCAAA+GGG - chr2_2:36222417-36222436 None:intergenic 30.0%
ATATAAGGAAGTTATGGCAA+AGG - chr2_2:36222418-36222437 None:intergenic 30.0%
ACATCTTGTTAAGGAATTGT+AGG - chr2_2:36222551-36222570 None:intergenic 30.0%
TTCTGTTAGACATCTTGTTA+AGG - chr2_2:36222560-36222579 None:intergenic 30.0%
!! CTATTCCTATGTTTTTGTTC+TGG - chr2_2:36222731-36222750 None:intergenic 30.0%
CAGAACAAAAACATAGGAAT+AGG + chr2_2:36222729-36222748 Msa0249490:intron 30.0%
AAAGAAGCAATAGAGGAATA+AGG + chr2_2:36222767-36222786 Msa0249490:intron 30.0%
TAAGGTAAACCTTACTTTGT+TGG + chr2_2:36222785-36222804 Msa0249490:intron 30.0%
TGATGCCTGAAAATAAGAAT+AGG + chr2_2:36222863-36222882 Msa0249490:intron 30.0%
GATGCCTGAAAATAAGAATA+GGG + chr2_2:36222864-36222883 Msa0249490:intron 30.0%
ATGCCTGAAAATAAGAATAG+GGG + chr2_2:36222865-36222884 Msa0249490:intron 30.0%
! ATGTTTCAACGTTTTCTGAT+AGG + chr2_2:36223059-36223078 Msa0249490:intron 30.0%
AACTTGTATGTGTATTGTTG+TGG + chr2_2:36223100-36223119 Msa0249490:intron 30.0%
! AATGAGAGAATTGGTATTGA+GGG - chr2_2:36223297-36223316 None:intergenic 30.0%
AAATGAGAGAATTGGTATTG+AGG - chr2_2:36223298-36223317 None:intergenic 30.0%
GAATCAAAGCAATGCATTAT+GGG - chr2_2:36223349-36223368 None:intergenic 30.0%
CGTAATATACAATATAGGAG+AGG - chr2_2:36223554-36223573 None:intergenic 30.0%
! AAATATCTTTCAAGTCTCAG+GGG + chr2_2:36223694-36223713 Msa0249490:intron 30.0%
AAACTTTACCTCGTATAATC+AGG - chr2_2:36223830-36223849 None:intergenic 30.0%
!!! CTTCAAGAGTATTGTTTTCA+TGG + chr2_2:36223939-36223958 Msa0249490:intron 30.0%
!!! AAGAGTATTGTTTTCATGGA+AGG + chr2_2:36223943-36223962 Msa0249490:intron 30.0%
!!! AGAGTATTGTTTTCATGGAA+GGG + chr2_2:36223944-36223963 Msa0249490:intron 30.0%
! TCTAAAATGGGATATGACAT+TGG - chr2_2:36224003-36224022 None:intergenic 30.0%
!! ATTATCTAGCACTGTTTTTC+AGG + chr2_2:36224023-36224042 Msa0249490:intron 30.0%
AATCCATGCATCTGATAATA+TGG - chr2_2:36224071-36224090 None:intergenic 30.0%
ATCCTTTATTCCAGGATAAA+TGG - chr2_2:36224221-36224240 None:intergenic 30.0%
TTTATCCTGGAATAAAGGAT+TGG + chr2_2:36224221-36224240 Msa0249490:CDS 30.0%
TTATCCTGGAATAAAGGATT+GGG + chr2_2:36224222-36224241 Msa0249490:CDS 30.0%
GAAACCATAGTTGTAAGTAT+TGG + chr2_2:36224341-36224360 Msa0249490:CDS 30.0%
!! TGTAAGTATTGGTTATTTGG+AGG + chr2_2:36224352-36224371 Msa0249490:CDS 30.0%
!! GTAAGTATTGGTTATTTGGA+GGG + chr2_2:36224353-36224372 Msa0249490:CDS 30.0%
TCAAGAGGATTGTTATATCA+TGG + chr2_2:36224382-36224401 Msa0249490:CDS 30.0%
TGGAATTACTTCTTCATTAC+AGG - chr2_2:36224443-36224462 None:intergenic 30.0%
! TTTTTCCTTCTCTGTCTATG+GGG - chr2_2:36219721-36219740 None:intergenic 35.0%
AAAATTGTATGGTTAGGGTG+CGG - chr2_2:36219765-36219784 None:intergenic 35.0%
! CACCCTAACCATACAATTTT+GGG + chr2_2:36219765-36219784 Msa0249490:CDS 35.0%
AAGGGTTGTTGTGAATTGAA+CGG - chr2_2:36219797-36219816 None:intergenic 35.0%
! TACGATGAATTTGGTATTGG+TGG + chr2_2:36220118-36220137 Msa0249490:CDS 35.0%
!! TATGTACCTTTTGGGGAATA+AGG - chr2_2:36220178-36220197 None:intergenic 35.0%
TCATGTAGTTAAGCCTCTAT+GGG + chr2_2:36220266-36220285 Msa0249490:intron 35.0%
CTTGTTGAGCAATTGTGAAA+AGG - chr2_2:36220323-36220342 None:intergenic 35.0%
! ATAGTCTTGATATCCATTGC+CGG - chr2_2:36220482-36220501 None:intergenic 35.0%
TCAAATGGTAAACAAAGACC+AGG - chr2_2:36220682-36220701 None:intergenic 35.0%
! GGATTGATATTTAGAGCTTG+AGG - chr2_2:36220721-36220740 None:intergenic 35.0%
! AATTAGTGATGGAAACCTCA+AGG - chr2_2:36220753-36220772 None:intergenic 35.0%
! GTTTAAGTTTGTTCTTACCG+CGG + chr2_2:36220788-36220807 Msa0249490:intron 35.0%
AAAATGAATCAGAAAGTCCG+CGG - chr2_2:36220808-36220827 None:intergenic 35.0%
TTTCCTCGCATGTGAAAATT+TGG + chr2_2:36220852-36220871 Msa0249490:CDS 35.0%
GAATCATCCAGTCTTAACTT+TGG + chr2_2:36220880-36220899 Msa0249490:CDS 35.0%
ATCATCCAGTCTTAACTTTG+GGG + chr2_2:36220882-36220901 Msa0249490:CDS 35.0%
CAAAACACTGGTACAACTAT+TGG - chr2_2:36221154-36221173 None:intergenic 35.0%
! CAATAGTTGTACCAGTGTTT+TGG + chr2_2:36221152-36221171 Msa0249490:intron 35.0%
TATGGAGAGCAGAAAATTAG+TGG + chr2_2:36221219-36221238 Msa0249490:intron 35.0%
! CTATACCGGTTAATAGGAAA+TGG - chr2_2:36221341-36221360 None:intergenic 35.0%
!! CGATGAAAAGATTTGTTAGG+TGG + chr2_2:36221413-36221432 Msa0249490:intron 35.0%
ATCAAGGATTTAGATGCCAT+TGG + chr2_2:36221510-36221529 Msa0249490:intron 35.0%
! ACATTCATCTCCTTTGAGAA+TGG + chr2_2:36221585-36221604 Msa0249490:intron 35.0%
! GCTTTTGTACTTTTCTCCAT+TGG - chr2_2:36221704-36221723 None:intergenic 35.0%
! TCTGGCTTCAATATTCATAG+CGG - chr2_2:36221755-36221774 None:intergenic 35.0%
TGAATATTGAAGCCAGAAGT+AGG + chr2_2:36221758-36221777 Msa0249490:intron 35.0%
ATAAGAAAACAACGAAGAGG+AGG + chr2_2:36221820-36221839 Msa0249490:intron 35.0%
GAGGCAAAATCAGAAATTGA+TGG + chr2_2:36221839-36221858 Msa0249490:intron 35.0%
! GATTGCAAAGATCATTTTGC+GGG + chr2_2:36221896-36221915 Msa0249490:intron 35.0%
ACAAAAGAGAAACCAATAGC+AGG + chr2_2:36221957-36221976 Msa0249490:intron 35.0%
TGAGAAGAATAATTTCCTGG+AGG + chr2_2:36222026-36222045 Msa0249490:intron 35.0%
GAGAAGAATAATTTCCTGGA+GGG + chr2_2:36222027-36222046 Msa0249490:intron 35.0%
! TAGAGTGTAGAAGCATAGAT+AGG + chr2_2:36222053-36222072 Msa0249490:intron 35.0%
ATAAGGTTACATAGACGGAA+AGG + chr2_2:36222101-36222120 Msa0249490:intron 35.0%
TTTATTAAGGATGGAGCTGT+GGG + chr2_2:36222153-36222172 Msa0249490:intron 35.0%
! TCGTTCGGTTATTTCGATAA+AGG - chr2_2:36222390-36222409 None:intergenic 35.0%
TTAAGGAATTGTAGGAGAAG+GGG - chr2_2:36222543-36222562 None:intergenic 35.0%
GTTAAGGAATTGTAGGAGAA+GGG - chr2_2:36222544-36222563 None:intergenic 35.0%
TGTTAAGGAATTGTAGGAGA+AGG - chr2_2:36222545-36222564 None:intergenic 35.0%
GACTTAGATAACAAAGGCAA+AGG + chr2_2:36222689-36222708 Msa0249490:intron 35.0%
! CTTTGTTGGTTATTGTTAGG+TGG + chr2_2:36222799-36222818 Msa0249490:intron 35.0%
!!! GAACCCCTATTCTTATTTTC+AGG - chr2_2:36222871-36222890 None:intergenic 35.0%
! TAGGGGTTCTAATGAAAAGT+TGG + chr2_2:36222882-36222901 Msa0249490:intron 35.0%
TGATAGGACTCGAACAAATA+AGG + chr2_2:36223075-36223094 Msa0249490:intron 35.0%
GATAGGACTCGAACAAATAA+GGG + chr2_2:36223076-36223095 Msa0249490:intron 35.0%
GGAAAAAGAAATCTGATCAG+AGG + chr2_2:36223121-36223140 Msa0249490:intron 35.0%
GGAATGAACGAAACTAAAGA+AGG + chr2_2:36223230-36223249 Msa0249490:intron 35.0%
CATCTGAGAAATGAGAGAAT+TGG - chr2_2:36223306-36223325 None:intergenic 35.0%
TATGGGAAGTAACAGAATGA+GGG - chr2_2:36223332-36223351 None:intergenic 35.0%
TTATGGGAAGTAACAGAATG+AGG - chr2_2:36223333-36223352 None:intergenic 35.0%
GGAATCAAAGCAATGCATTA+TGG - chr2_2:36223350-36223369 None:intergenic 35.0%
TGTATGAAATGGAGAAGAGA+GGG - chr2_2:36223428-36223447 None:intergenic 35.0%
ATGTATGAAATGGAGAAGAG+AGG - chr2_2:36223429-36223448 None:intergenic 35.0%
TGTTTGTCACATACACTTTC+AGG + chr2_2:36223487-36223506 Msa0249490:intron 35.0%
AGGCCCGTAATATACAATAT+AGG - chr2_2:36223559-36223578 None:intergenic 35.0%
AATATGCTTCCTGAGATTTC+TGG + chr2_2:36223755-36223774 Msa0249490:CDS 35.0%
ATATGCTTCCTGAGATTTCT+GGG + chr2_2:36223756-36223775 Msa0249490:CDS 35.0%
!! TCAGATTGAAAGCATTTGTC+AGG - chr2_2:36223863-36223882 None:intergenic 35.0%
! AATCTCTAGTTTGGCTCAAT+TGG + chr2_2:36223885-36223904 Msa0249490:intron 35.0%
CATGCATCTGATAATATGGA+AGG - chr2_2:36224067-36224086 None:intergenic 35.0%
CTTCCATATTATCAGATGCA+TGG + chr2_2:36224065-36224084 Msa0249490:CDS 35.0%
TCTAAATGTTGGGTCAACTT+GGG + chr2_2:36224111-36224130 Msa0249490:CDS 35.0%
AAAACCCAATCCTTTATTCC+AGG - chr2_2:36224229-36224248 None:intergenic 35.0%
! ATAAAGGATTGGGTTTTCAC+CGG + chr2_2:36224232-36224251 Msa0249490:CDS 35.0%
TCATTAATACAACCCAGAAG+TGG - chr2_2:36224310-36224329 None:intergenic 35.0%
GAGGATTGTTATATCATGGT+TGG + chr2_2:36224386-36224405 Msa0249490:CDS 35.0%
! TTGTTATATCATGGTTGGCT+AGG + chr2_2:36224391-36224410 Msa0249490:CDS 35.0%
TTACCCATACTTGTCGTCTT+TGG + chr2_2:36219678-36219697 Msa0249490:five_prime_UTR 40.0%
! GCACCCTAACCATACAATTT+TGG + chr2_2:36219764-36219783 Msa0249490:CDS 40.0%
GGCCCAAAATTGTATGGTTA+GGG - chr2_2:36219770-36219789 None:intergenic 40.0%
GGTGAGTTAGAGAAGAAGAA+GGG - chr2_2:36219815-36219834 None:intergenic 40.0%
TGGTGAGTTAGAGAAGAAGA+AGG - chr2_2:36219816-36219835 None:intergenic 40.0%
AAGAAGTTACCTTACCTGAG+AGG - chr2_2:36219843-36219862 None:intergenic 40.0%
!! GATGAATTTGGTATTGGTGG+CGG + chr2_2:36220121-36220140 Msa0249490:CDS 40.0%
CTTCATCCTTATTCCCCAAA+AGG + chr2_2:36220169-36220188 Msa0249490:CDS 40.0%
CTCATGTAGTTAAGCCTCTA+TGG + chr2_2:36220265-36220284 Msa0249490:intron 40.0%
ACCAGGTAAAAGAGTTTGAG+CGG - chr2_2:36220665-36220684 None:intergenic 40.0%
! TCACCAAATTTTCACATGCG+AGG - chr2_2:36220858-36220877 None:intergenic 40.0%
TTTCTCCCCAAAGTTAAGAC+TGG - chr2_2:36220890-36220909 None:intergenic 40.0%
CTTCAAACTCAGAAAGTCCA+TGG - chr2_2:36220939-36220958 None:intergenic 40.0%
CATGGACTTTCTGAGTTTGA+AGG + chr2_2:36220937-36220956 Msa0249490:CDS 40.0%
GCAGCAAGCATATTTACAGT+CGG - chr2_2:36221008-36221027 None:intergenic 40.0%
GTTGCATCCGCTCAATTTAA+AGG - chr2_2:36221042-36221061 None:intergenic 40.0%
AATTGAGCGGATGCAACAAT+TGG + chr2_2:36221045-36221064 Msa0249490:intron 40.0%
CGGATGCAACAATTGGAATT+TGG + chr2_2:36221052-36221071 Msa0249490:intron 40.0%
ATTCAAGAGACCAGGAGTAA+CGG - chr2_2:36221265-36221284 None:intergenic 40.0%
ATAGGAAATGGACCAGGAAA+GGG - chr2_2:36221329-36221348 None:intergenic 40.0%
AATAGGAAATGGACCAGGAA+AGG - chr2_2:36221330-36221349 None:intergenic 40.0%
CTGGTCCATTTCCTATTAAC+CGG + chr2_2:36221333-36221352 Msa0249490:intron 40.0%
! GTAGCACTATACCGGTTAAT+AGG - chr2_2:36221347-36221366 None:intergenic 40.0%
CCAAGATTGTAGCACTATAC+CGG - chr2_2:36221355-36221374 None:intergenic 40.0%
CTACAATCTTGGAGCTATGA+GGG + chr2_2:36221363-36221382 Msa0249490:intron 40.0%
TACAATCTTGGAGCTATGAG+GGG + chr2_2:36221364-36221383 Msa0249490:intron 40.0%
! GAGGGGATTTAGAGTGAAAA+TGG + chr2_2:36221381-36221400 Msa0249490:intron 40.0%
AGGATTTAGATGCCATTGGA+TGG + chr2_2:36221514-36221533 Msa0249490:intron 40.0%
AGGAGATGAATGTAGCATTC+TGG - chr2_2:36221578-36221597 None:intergenic 40.0%
AAGTACAAGAAGAGAGCCAA+TGG + chr2_2:36221685-36221704 Msa0249490:intron 40.0%
! AGATCATTTTGCGGGAAACT+AGG + chr2_2:36221904-36221923 Msa0249490:intron 40.0%
! GATCATTTTGCGGGAAACTA+GGG + chr2_2:36221905-36221924 Msa0249490:intron 40.0%
ATAGATAGGTCTTCTGTCAG+TGG + chr2_2:36222067-36222086 Msa0249490:intron 40.0%
! CAGTGGTGATGCCAAATATA+AGG + chr2_2:36222084-36222103 Msa0249490:intron 40.0%
ATAGACGGAAAGGATGATAC+CGG + chr2_2:36222111-36222130 Msa0249490:intron 40.0%
AGATGGGCCTTTATTAAGGA+TGG + chr2_2:36222144-36222163 Msa0249490:intron 40.0%
CACAGCTCCATCCTTAATAA+AGG - chr2_2:36222154-36222173 None:intergenic 40.0%
CTTTATTAAGGATGGAGCTG+TGG + chr2_2:36222152-36222171 Msa0249490:intron 40.0%
GTGTTAGTAACACCGTCAAA+CGG - chr2_2:36222214-36222233 None:intergenic 40.0%
!! GTTTGACGGTGTTACTAACA+CGG + chr2_2:36222213-36222232 Msa0249490:intron 40.0%
!! AAGGTTGTTTTCGACGCATA+AGG - chr2_2:36222267-36222286 None:intergenic 40.0%
TGCGTCGAAAACAACCTTTA+AGG + chr2_2:36222269-36222288 Msa0249490:intron 40.0%
! CGAAAACAACCTTTAAGGAG+CGG + chr2_2:36222274-36222293 Msa0249490:intron 40.0%
! GAAAACAACCTTTAAGGAGC+GGG + chr2_2:36222275-36222294 Msa0249490:intron 40.0%
AGGCAGAATTTGATGGAAAC+TGG + chr2_2:36222306-36222325 Msa0249490:intron 40.0%
ATGGTTCACATTGAGAGTCT+TGG + chr2_2:36222358-36222377 Msa0249490:intron 40.0%
TGGTTCACATTGAGAGTCTT+GGG + chr2_2:36222359-36222378 Msa0249490:intron 40.0%
AAGTGCGGCGATTTAATTGA+TGG - chr2_2:36222593-36222612 None:intergenic 40.0%
ATCAATTAAATCGCCGCACT+TGG + chr2_2:36222592-36222611 Msa0249490:intron 40.0%
TCAATTAAATCGCCGCACTT+GGG + chr2_2:36222593-36222612 Msa0249490:intron 40.0%
CAGCTCCAGAACAAAAACAT+AGG + chr2_2:36222723-36222742 Msa0249490:intron 40.0%
CGAAACTAAAGAAGGAATCC+TGG + chr2_2:36223238-36223257 Msa0249490:intron 40.0%
AGAGGGAGAAACAACAGAAT+GGG - chr2_2:36223411-36223430 None:intergenic 40.0%
AGGGACACAGATGTATGAAA+TGG - chr2_2:36223439-36223458 None:intergenic 40.0%
! ACTTTCAGGCTCTTTTCAGA+TGG + chr2_2:36223501-36223520 Msa0249490:intron 40.0%
CAATATAGGAGAGGAACAAG+TGG - chr2_2:36223545-36223564 None:intergenic 40.0%
! CTCAGGAAGCATATTCACTT+TGG - chr2_2:36223750-36223769 None:intergenic 40.0%
! CAGAGGTGTAATTGTTCACA+TGG + chr2_2:36223799-36223818 Msa0249490:CDS 40.0%
CTTTACCTCGTATAATCAGG+CGG - chr2_2:36223827-36223846 None:intergenic 40.0%
AGATGCATGGATTTCTGTTC+AGG + chr2_2:36224078-36224097 Msa0249490:CDS 40.0%
GATGCATGGATTTCTGTTCA+GGG + chr2_2:36224079-36224098 Msa0249490:CDS 40.0%
TTGACCCAACATTTAGACTG+CGG - chr2_2:36224108-36224127 None:intergenic 40.0%
GTCTAAATGTTGGGTCAACT+TGG + chr2_2:36224110-36224129 Msa0249490:CDS 40.0%
GGCCATTTATCCTGGAATAA+AGG + chr2_2:36224216-36224235 Msa0249490:CDS 40.0%
! TATTGGTTATTTGGAGGGCT+AGG + chr2_2:36224358-36224377 Msa0249490:CDS 40.0%
! TTCCATCTGAGTTGACTTCT+TGG + chr2_2:36224458-36224477 Msa0249490:CDS 40.0%
TTCCAAGAAGTCAACTCAGA+TGG - chr2_2:36224463-36224482 None:intergenic 40.0%
CGACCAAAGACGACAAGTAT+GGG - chr2_2:36219684-36219703 None:intergenic 45.0%
TCGACCAAAGACGACAAGTA+TGG - chr2_2:36219685-36219704 None:intergenic 45.0%
ACATACCCCATAGACAGAGA+AGG + chr2_2:36219713-36219732 Msa0249490:five_prime_UTR 45.0%
GGGCCCAAAATTGTATGGTT+AGG - chr2_2:36219771-36219790 None:intergenic 45.0%
TTGTTGTGAATTGAACGGCG+GGG - chr2_2:36219792-36219811 None:intergenic 45.0%
GTTGTTGTGAATTGAACGGC+GGG - chr2_2:36219793-36219812 None:intergenic 45.0%
GGTTGTTGTGAATTGAACGG+CGG - chr2_2:36219794-36219813 None:intergenic 45.0%
TAACTCACCAACATCCTCTC+AGG + chr2_2:36219826-36219845 Msa0249490:CDS 45.0%
TACCTTACCTGAGAGGATGT+TGG - chr2_2:36219836-36219855 None:intergenic 45.0%
AGAAACGAGGAGAATGACAG+TGG - chr2_2:36219906-36219925 None:intergenic 45.0%
CTTGAGCAAATGCCAAACGA+CGG - chr2_2:36219968-36219987 None:intergenic 45.0%
TAGGACTTTGCTGCAATGCA+AGG - chr2_2:36220072-36220091 None:intergenic 45.0%
TGCATTGCAGCAAAGTCCTA+AGG + chr2_2:36220072-36220091 Msa0249490:intron 45.0%
TGTAGTTAAGCCTCTATGGG+AGG + chr2_2:36220269-36220288 Msa0249490:intron 45.0%
GTAGTTAAGCCTCTATGGGA+GGG + chr2_2:36220270-36220289 Msa0249490:intron 45.0%
CAGTGGTGAGCAACTAAGAT+TGG - chr2_2:36220425-36220444 None:intergenic 45.0%
CTCATGTTCACCTGACTTCA+GGG + chr2_2:36220445-36220464 Msa0249490:intron 45.0%
TCATGTTCACCTGACTTCAG+GGG + chr2_2:36220446-36220465 Msa0249490:intron 45.0%
TTGTACTCTGCAGCAAGGAA+GGG - chr2_2:36220626-36220645 None:intergenic 45.0%
TTTGTACTCTGCAGCAAGGA+AGG - chr2_2:36220627-36220646 None:intergenic 45.0%
AGTGTTTGTACTCTGCAGCA+AGG - chr2_2:36220631-36220650 None:intergenic 45.0%
ATCGATGTAGCCCAAAACAC+TGG - chr2_2:36221166-36221185 None:intergenic 45.0%
TTCAAGAGACCAGGAGTAAC+GGG - chr2_2:36221264-36221283 None:intergenic 45.0%
TCCTGGTCTCTTGAATATCC+AGG + chr2_2:36221269-36221288 Msa0249490:intron 45.0%
CCTGGTCTCTTGAATATCCA+GGG + chr2_2:36221270-36221289 Msa0249490:intron 45.0%
CGGTTAATAGGAAATGGACC+AGG - chr2_2:36221335-36221354 None:intergenic 45.0%
CCGGTATAGTGCTACAATCT+TGG + chr2_2:36221352-36221371 Msa0249490:intron 45.0%
GCTACAATCTTGGAGCTATG+AGG + chr2_2:36221362-36221381 Msa0249490:intron 45.0%
!!! GCATTTTTTTGGGGGAAGAG+TGG + chr2_2:36221485-36221504 Msa0249490:intron 45.0%
! CTCACCTCTGGTGATTTTCT+TGG + chr2_2:36221542-36221561 Msa0249490:intron 45.0%
CTCTCCAAGAAAATCACCAG+AGG - chr2_2:36221549-36221568 None:intergenic 45.0%
CACGAGCAAACCATTCTCAA+AGG - chr2_2:36221598-36221617 None:intergenic 45.0%
! ATTTTGCGGGAAACTAGGGA+AGG + chr2_2:36221909-36221928 Msa0249490:intron 45.0%
AGGGAGATGGGCCTTTATTA+AGG + chr2_2:36222140-36222159 Msa0249490:intron 45.0%
CATCCACCAAAACCGTTTGA+CGG + chr2_2:36222199-36222218 Msa0249490:intron 45.0%
! GTAACACCGTCAAACGGTTT+TGG - chr2_2:36222208-36222227 None:intergenic 45.0%
AAGGTTGTGCAATTTCACCG+TGG - chr2_2:36222248-36222267 None:intergenic 45.0%
ATCGCTCAGGCAGAATTTGA+TGG + chr2_2:36222299-36222318 Msa0249490:intron 45.0%
AGGAAGTTATGGCAAAGGGA+GGG - chr2_2:36222413-36222432 None:intergenic 45.0%
AAGGAAGTTATGGCAAAGGG+AGG - chr2_2:36222414-36222433 None:intergenic 45.0%
AAGGAGACAGTGAGCATTAG+TGG + chr2_2:36222653-36222672 Msa0249490:intron 45.0%
AGGAGACAGTGAGCATTAGT+GGG + chr2_2:36222654-36222673 Msa0249490:intron 45.0%
GAGGTGAAATACCTCTGTAG+CGG + chr2_2:36223140-36223159 Msa0249490:intron 45.0%
! GGTTGTATTTTCCGCTACAG+AGG - chr2_2:36223154-36223173 None:intergenic 45.0%
! GGAGTGGAGCGAAAGTTTTT+AGG - chr2_2:36223371-36223390 None:intergenic 45.0%
AGGGAGAAACAACAGAATGG+GGG - chr2_2:36223409-36223428 None:intergenic 45.0%
GAGGGAGAAACAACAGAATG+GGG - chr2_2:36223410-36223429 None:intergenic 45.0%
GAGAGGGAGAAACAACAGAA+TGG - chr2_2:36223412-36223431 None:intergenic 45.0%
ACGAGGAAGTAAAGAGGGTA+GGG - chr2_2:36223458-36223477 None:intergenic 45.0%
CACACACGAGGAAGTAAAGA+GGG - chr2_2:36223463-36223482 None:intergenic 45.0%
TCACACACGAGGAAGTAAAG+AGG - chr2_2:36223464-36223483 None:intergenic 45.0%
GACAAACAATGTCACACACG+AGG - chr2_2:36223475-36223494 None:intergenic 45.0%
GATGCAGTCATCATATGCCT+TGG + chr2_2:36223722-36223741 Msa0249490:CDS 45.0%
GCATATTCACTTTGGCACCA+AGG - chr2_2:36223742-36223761 None:intergenic 45.0%
! CTTCCTTTGAGAACATGCAG+AGG + chr2_2:36223782-36223801 Msa0249490:CDS 45.0%
ACACCTCTGCATGTTCTCAA+AGG - chr2_2:36223788-36223807 None:intergenic 45.0%
! TTCAGGTGTTATCCTGAGCA+TGG + chr2_2:36224040-36224059 Msa0249490:intron 45.0%
AATATGGAAGGTCCATGCTC+AGG - chr2_2:36224055-36224074 None:intergenic 45.0%
TGACCCAACATTTAGACTGC+GGG - chr2_2:36224107-36224126 None:intergenic 45.0%
! TGGTTGGCTAGGTAGTTTGA+TGG + chr2_2:36224402-36224421 Msa0249490:CDS 45.0%
ACTTGTCGTCTTTGGTCGAG+CGG + chr2_2:36219686-36219705 Msa0249490:five_prime_UTR 50.0%
ATTGTATGGTTAGGGTGCGG+AGG - chr2_2:36219762-36219781 None:intergenic 50.0%
TGTTGTGAATTGAACGGCGG+GGG - chr2_2:36219791-36219810 None:intergenic 50.0%
CACCAACATCCTCTCAGGTA+AGG + chr2_2:36219831-36219850 Msa0249490:intron 50.0%
GTCATTCTCCTCGTTTCTCC+AGG + chr2_2:36219908-36219927 Msa0249490:intron 50.0%
CGTCGTTTGGCATTTGCTCA+AGG + chr2_2:36219966-36219985 Msa0249490:CDS 50.0%
!! GGTGCTTCTGGAATTTCTGG+AGG + chr2_2:36220142-36220161 Msa0249490:CDS 50.0%
AGTCAGGTGAACATGAGCAG+TGG - chr2_2:36220442-36220461 None:intergenic 50.0%
GCTCATGTTCACCTGACTTC+AGG + chr2_2:36220444-36220463 Msa0249490:intron 50.0%
! GCCGCTCAAACTCTTTTACC+TGG + chr2_2:36220661-36220680 Msa0249490:CDS 50.0%
CAATCCTCGACACTACCTTG+AGG + chr2_2:36220735-36220754 Msa0249490:CDS 50.0%
GAAACCTCAAGGTAGTGTCG+AGG - chr2_2:36220742-36220761 None:intergenic 50.0%
CCCTGGATATTCAAGAGACC+AGG - chr2_2:36221273-36221292 None:intergenic 50.0%
TAGGTGGCAACGCCTATTAG+TGG + chr2_2:36221429-36221448 Msa0249490:intron 50.0%
TGGGGGAAGAGTGGTTATCA+AGG + chr2_2:36221494-36221513 Msa0249490:intron 50.0%
AGGTGAGCTTCTCCATCCAA+TGG - chr2_2:36221529-36221548 None:intergenic 50.0%
CTAGGGAAGGATCGAGATAG+TGG + chr2_2:36221922-36221941 Msa0249490:intron 50.0%
CTTGTCTGCTTGCCTGCTAT+TGG - chr2_2:36221972-36221991 None:intergenic 50.0%
AAGGATGATACCGGCAGCAA+AGG + chr2_2:36222120-36222139 Msa0249490:intron 50.0%
AGGATGATACCGGCAGCAAA+GGG + chr2_2:36222121-36222140 Msa0249490:intron 50.0%
!! ACACCGTCAAACGGTTTTGG+TGG - chr2_2:36222205-36222224 None:intergenic 50.0%
!! GGCATTGGTAGCATCTAGCA+AGG + chr2_2:36222634-36222653 Msa0249490:intron 50.0%
GGAGACAGTGAGCATTAGTG+GGG + chr2_2:36222655-36222674 Msa0249490:intron 50.0%
GTATTGAGGGAAAGCTGAGC+AGG - chr2_2:36223284-36223303 None:intergenic 50.0%
! TCCACTCCCTTTTTCCCATG+TGG + chr2_2:36223383-36223402 Msa0249490:intron 50.0%
CACGAGGAAGTAAAGAGGGT+AGG - chr2_2:36223459-36223478 None:intergenic 50.0%
AGTGGACAAGGGGCGAAAAT+GGG - chr2_2:36223527-36223546 None:intergenic 50.0%
AAGTGGACAAGGGGCGAAAA+TGG - chr2_2:36223528-36223547 None:intergenic 50.0%
GAGAGGAACAAGTGGACAAG+GGG - chr2_2:36223537-36223556 None:intergenic 50.0%
GGAGAGGAACAAGTGGACAA+GGG - chr2_2:36223538-36223557 None:intergenic 50.0%
AGGAGAGGAACAAGTGGACA+AGG - chr2_2:36223539-36223558 None:intergenic 50.0%
! TGCTTCCTGAGATTTCTGGG+AGG + chr2_2:36223759-36223778 Msa0249490:CDS 50.0%
TGGAACCGCCTGATTATACG+AGG + chr2_2:36223819-36223838 Msa0249490:CDS 50.0%
GCTCCCGCAGTCTAAATGTT+GGG + chr2_2:36224101-36224120 Msa0249490:CDS 50.0%
ATGTTGGGTCAACTTGGGAG+TGG + chr2_2:36224116-36224135 Msa0249490:CDS 50.0%
GGATAAATGGCCGATGCCTT+CGG - chr2_2:36224208-36224227 None:intergenic 50.0%
!! AAGGCATCGGCCATTTATCC+TGG + chr2_2:36224208-36224227 Msa0249490:CDS 50.0%
! GTTTTCACCGGAGCAAAAGC+TGG + chr2_2:36224244-36224263 Msa0249490:CDS 50.0%
AGAAGTGGAAGCGATCCATG+TGG - chr2_2:36224295-36224314 None:intergenic 50.0%
ACATGGATCGCTTCCACTTC+TGG + chr2_2:36224294-36224313 Msa0249490:CDS 50.0%
CATGGATCGCTTCCACTTCT+GGG + chr2_2:36224295-36224314 Msa0249490:CDS 50.0%
TTTGGAGGGCTAGGTTCAAG+AGG + chr2_2:36224367-36224386 Msa0249490:CDS 50.0%
ACAGCGAACCTGGAGAAACG+AGG - chr2_2:36219919-36219938 None:intergenic 55.0%
TTCTCCAGGTTCGCTGTCCT+TGG + chr2_2:36219922-36219941 Msa0249490:intron 55.0%
TCGCTGGACTTTCCGTCGTT+TGG + chr2_2:36219953-36219972 Msa0249490:CDS 55.0%
!! GGCGGTGCTTCTGGAATTTC+TGG + chr2_2:36220139-36220158 Msa0249490:CDS 55.0%
!! TATGGGAGGGTGCTCAGTGT+TGG + chr2_2:36220283-36220302 Msa0249490:CDS 55.0%
CGTAAGATGCCCCTGAAGTC+AGG - chr2_2:36220458-36220477 None:intergenic 55.0%
!! CTTCAGGGGCATCTTACGAC+CGG + chr2_2:36220460-36220479 Msa0249490:intron 55.0%
GCAGCAAGGAAGGGAAGTCT+TGG - chr2_2:36220617-36220636 None:intergenic 55.0%
TGGATGGAGAAGCTCACCTC+TGG + chr2_2:36221530-36221549 Msa0249490:intron 55.0%
TCTACACTCTACAGCCCTCC+AGG - chr2_2:36222044-36222063 None:intergenic 55.0%
ATACCGGCAGCAAAGGGAGA+TGG + chr2_2:36222127-36222146 Msa0249490:intron 55.0%
TACCGGCAGCAAAGGGAGAT+GGG + chr2_2:36222128-36222147 Msa0249490:intron 55.0%
AAGGATGGAGCTGTGGGTTC+TGG + chr2_2:36222159-36222178 Msa0249490:intron 55.0%
TAACACGGTGACTGCTGCCA+CGG + chr2_2:36222228-36222247 Msa0249490:intron 55.0%
GAGCGATACCCGCTCCTTAA+AGG - chr2_2:36222286-36222305 None:intergenic 55.0%
! TTAAGGAGCGGGTATCGCTC+AGG + chr2_2:36222286-36222305 Msa0249490:intron 55.0%
ATGGCAAAGGGAGGGTCGTT+CGG - chr2_2:36222405-36222424 None:intergenic 55.0%
TCCACACACAAGCCCAAGTG+CGG - chr2_2:36222608-36222627 None:intergenic 55.0%
TGGGCTTGTGTGTGGAGAAG+AGG + chr2_2:36222612-36222631 Msa0249490:intron 55.0%
GGGCTTGTGTGTGGAGAAGA+GGG + chr2_2:36222613-36222632 Msa0249490:intron 55.0%
! GTGTGTGGAGAAGAGGGCAT+TGG + chr2_2:36222619-36222638 Msa0249490:intron 55.0%
! GGAATCCTGGACTCTGAGAG+TGG + chr2_2:36223251-36223270 Msa0249490:intron 55.0%
TGAGGGAAAGCTGAGCAGGA+AGG - chr2_2:36223280-36223299 None:intergenic 55.0%
GCCACATGGGAAAAAGGGAG+TGG - chr2_2:36223387-36223406 None:intergenic 55.0%
TGGGGGCCACATGGGAAAAA+GGG - chr2_2:36223392-36223411 None:intergenic 55.0%
ATGGGGGCCACATGGGAAAA+AGG - chr2_2:36223393-36223412 None:intergenic 55.0%
CAACAGAATGGGGGCCACAT+GGG - chr2_2:36223400-36223419 None:intergenic 55.0%
ACAACAGAATGGGGGCCACA+TGG - chr2_2:36223401-36223420 None:intergenic 55.0%
GGAAGCCTCCCAGAAATCTC+AGG - chr2_2:36223767-36223786 None:intergenic 55.0%
GGCTCCCGCAGTCTAAATGT+TGG + chr2_2:36224100-36224119 Msa0249490:CDS 55.0%
TCTTCATCAGCTCCTGCCGA+AGG + chr2_2:36224189-36224208 Msa0249490:CDS 55.0%
! CCTCAGACCAGCTTTTGCTC+CGG - chr2_2:36224254-36224273 None:intergenic 55.0%
! CGGAGCAAAAGCTGGTCTGA+GGG + chr2_2:36224252-36224271 Msa0249490:CDS 55.0%
GGCGGGGGCCCAAAATTGTA+TGG - chr2_2:36219776-36219795 None:intergenic 60.0%
!! GGTATTGGTGGCGGTGCTTC+TGG + chr2_2:36220130-36220149 Msa0249490:CDS 60.0%
CACTGAGCACCCTCCCATAG+AGG - chr2_2:36220282-36220301 None:intergenic 60.0%
GGGCATCTTACGACCGGCAA+TGG + chr2_2:36220466-36220485 Msa0249490:CDS 60.0%
!! TGGGAGTGTCCCGTTACTCC+TGG + chr2_2:36221252-36221271 Msa0249490:intron 60.0%
GGCTACCACTCTCAGAGTCC+AGG - chr2_2:36223259-36223278 None:intergenic 60.0%
! TCAGCTCCTGCCGAAGGCAT+CGG + chr2_2:36224195-36224214 Msa0249490:CDS 60.0%
AAATGGCCGATGCCTTCGGC+AGG - chr2_2:36224204-36224223 None:intergenic 60.0%
! CCGGAGCAAAAGCTGGTCTG+AGG + chr2_2:36224251-36224270 Msa0249490:CDS 60.0%
ATGCCTCCACTCACGCCACA+TGG + chr2_2:36224277-36224296 Msa0249490:CDS 60.0%
GATCCATGTGGCGTGAGTGG+AGG - chr2_2:36224283-36224302 None:intergenic 60.0%
AGCGATCCATGTGGCGTGAG+TGG - chr2_2:36224286-36224305 None:intergenic 60.0%
AGCGCCAAGGACAGCGAACC+TGG - chr2_2:36219929-36219948 None:intergenic 65.0%
AGGTTCGCTGTCCTTGGCGC+TGG + chr2_2:36219928-36219947 Msa0249490:intron 65.0%
!! GTCCTTGGCGCTGGTTTCGC+TGG + chr2_2:36219937-36219956 Msa0249490:CDS 65.0%
GTCCAGCGAAACCAGCGCCA+AGG - chr2_2:36219942-36219961 None:intergenic 65.0%
GGCCCATCTCCCTTTGCTGC+CGG - chr2_2:36222133-36222152 None:intergenic 65.0%
GCCGCACTTGGGCTTGTGTG+TGG + chr2_2:36222604-36222623 Msa0249490:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36219674 36224561 36219674 ID=Msa0249490;Name=Msa0249490
chr2_2 mRNA 36219674 36224561 36219674 ID=Msa0249490-mRNA-1;Parent=Msa0249490;Name=Msa0249490-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73|1|1|1|1|1|9|57|424
chr2_2 exon 36219674 36219847 36219674 ID=Msa0249490-mRNA-1:exon:11606;Parent=Msa0249490-mRNA-1
chr2_2 exon 36219930 36219987 36219930 ID=Msa0249490-mRNA-1:exon:11607;Parent=Msa0249490-mRNA-1
chr2_2 exon 36220082 36220190 36220082 ID=Msa0249490-mRNA-1:exon:11608;Parent=Msa0249490-mRNA-1
chr2_2 exon 36220274 36220382 36220274 ID=Msa0249490-mRNA-1:exon:11609;Parent=Msa0249490-mRNA-1
chr2_2 exon 36220466 36220517 36220466 ID=Msa0249490-mRNA-1:exon:11610;Parent=Msa0249490-mRNA-1
chr2_2 exon 36220610 36220756 36220610 ID=Msa0249490-mRNA-1:exon:11611;Parent=Msa0249490-mRNA-1
chr2_2 exon 36220847 36220958 36220847 ID=Msa0249490-mRNA-1:exon:11612;Parent=Msa0249490-mRNA-1
chr2_2 exon 36223714 36223840 36223714 ID=Msa0249490-mRNA-1:exon:11613;Parent=Msa0249490-mRNA-1
chr2_2 exon 36224045 36224561 36224045 ID=Msa0249490-mRNA-1:exon:11614;Parent=Msa0249490-mRNA-1
chr2_2 five_prime_UTR 36219674 36219746 36219674 ID=Msa0249490-mRNA-1:five_prime_utr;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36219747 36219847 36219747 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36219930 36219987 36219930 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36220082 36220190 36220082 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36220274 36220382 36220274 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36220466 36220517 36220466 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36220610 36220756 36220610 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36220847 36220958 36220847 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36223714 36223840 36223714 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 CDS 36224045 36224504 36224045 ID=Msa0249490-mRNA-1:cds;Parent=Msa0249490-mRNA-1
chr2_2 three_prime_UTR 36224505 36224561 36224505 ID=Msa0249490-mRNA-1:three_prime_utr;Parent=Msa0249490-mRNA-1
Gene Sequence

>Msa0249490

ATGAAGATATGTCCTCCGCACCCTAACCATACAATTTTGGGCCCCCGCCGTTCAATTCACAACAACCCTTCTTCTTCTCTAACTCACCAACATCCTCTCAGGTTCGCTGTCCTTGGCGCTGGTTTCGCTGGACTTTCCGTCGTTTGGCATTTGCTCAAGCAAAGTCCTAAGGAGTTGAACATAAATATTCATTTATACGATGAATTTGGTATTGGTGGCGGTGCTTCTGGAATTTCTGGAGGTCTTCTTCATCCTTATTCCCCAAAAGTTAAGCCTCTATGGGAGGGTGCTCAGTGTTGGAAAGAGACCATAAACCTTTTCACAATTGCTCAACAAGCTACTCAACATCACATCCAACCTTTTCTTCCTCATAAAAGGGGCATCTTACGACCGGCAATGGATATCAAGACTATGACCAAATTGAATGATAATGCCAAGACTTCCCTTCCTTGCTGCAGAGTACAAACACTTAATAATCAAGCCGCTCAAACTCTTTTACCTGGTCTTTGTTTACCATTTGACACAGCTTTCTTTATGCCTCAAGCTCTAAATATCAATCCTCGACACTACCTTGAGGCACTTTTCCTCGCATGTGAAAATTTGGTGAAAGAATCATCCAGTCTTAACTTTGGGGAGAAACAGCTTAGTTTACACAAAAAATCTATCCATGGACTTTCTGAGTTTGAAGGGGAATATGATGCAGTCATCATATGCCTTGGTGCCAAAGTGAATATGCTTCCTGAGATTTCTGGGAGGCTTCCTTTGAGAACATGCAGAGGTGTAATTGTTCACATGGAACCGCCTGATTATACGAGGTGTTATCCTGAGCATGGACCTTCCATATTATCAGATGCATGGATTTCTGTTCAGGGCTCCCGCAGTCTAAATGTTGGGTCAACTTGGGAGTGGAAATCTATAAATTCATCGTCAAATGTTTCTAATGATGAAGCTTCAAAAGCTCTTCATCAGCTCCTGCCGAAGGCATCGGCCATTTATCCTGGAATAAAGGATTGGGTTTTCACCGGAGCAAAAGCTGGTCTGAGGGCAATGCCTCCACTCACGCCACATGGATCGCTTCCACTTCTGGGTTGTATTAATGATTTCATTGGCAGAAACCATAGTTGTAAGTATTGGTTATTTGGAGGGCTAGGTTCAAGAGGATTGTTATATCATGGTTGGCTAGGTAGTTTGATGGCACATGCTGTACTTTCCTGTAATGAAGAAGTAATTCCATCTGAGTTGACTTCTTGGAAAAACATTAAACCCAAATTTTAA

Protein sequence

>Msa0249490

MKICPPHPNHTILGPRRSIHNNPSSSLTHQHPLRFAVLGAGFAGLSVVWHLLKQSPKELNINIHLYDEFGIGGGASGISGGLLHPYSPKVKPLWEGAQCWKETINLFTIAQQATQHHIQPFLPHKRGILRPAMDIKTMTKLNDNAKTSLPCCRVQTLNNQAAQTLLPGLCLPFDTAFFMPQALNINPRHYLEALFLACENLVKESSSLNFGEKQLSLHKKSIHGLSEFEGEYDAVIICLGAKVNMLPEISGRLPLRTCRGVIVHMEPPDYTRCYPEHGPSILSDAWISVQGSRSLNVGSTWEWKSINSSSNVSNDEASKALHQLLPKASAIYPGIKDWVFTGAKAGLRAMPPLTPHGSLPLLGCINDFIGRNHSCKYWLFGGLGSRGLLYHGWLGSLMAHAVLSCNEEVIPSELTSWKNIKPKF*