AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372570 MtrunA17_Chr3g0119811 97.674 215 5 0 1 215 1 215 3.90e-152 421
Msa0372570 MtrunA17_Chr1g0179011 44.286 140 75 2 66 202 5 144 2.26e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372570 AT1G32990.1 76.699 206 43 3 10 215 21 221 1.58e-104 301
Msa0372570 AT5G51610.1 55.333 150 28 1 63 212 68 178 5.30e-46 150
Msa0372570 AT4G35490.2 47.101 138 70 2 68 202 13 150 3.66e-31 112
Msa0372570 AT4G35490.1 47.101 138 70 2 68 202 13 150 3.66e-31 112

Find 81 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAGTTGTTTGGATAAAA+TGG 0.179290 3_1:-71148145 None:intergenic
AGCAGGCACAGCGGCAAATA+TGG 0.212659 3_1:+71150261 Msa0372570:CDS
TGCTTTGCCACCACCGGGTT+TGG 0.217256 3_1:-71148375 None:intergenic
TTCAAAGGGTGTTAACATTA+TGG 0.250272 3_1:+71148573 Msa0372570:CDS
GTATTTAAATTTAAATATAA+TGG 0.252953 3_1:-71150467 None:intergenic
GCTTTGCCACCACCGGGTTT+GGG 0.332344 3_1:-71148374 None:intergenic
CAAAGCAAAGGGAAGTTGTT+TGG 0.340177 3_1:-71148154 None:intergenic
TGGAGCCGGTGTCGCCTTCC+CGG 0.342001 3_1:-71148530 None:intergenic
CCACCGGTTGGACCGGCTCT+TGG 0.343636 3_1:+71148550 Msa0372570:CDS
TGAGAGGTGGGAAGGGAAAG+GGG 0.365846 3_1:-71148320 None:intergenic
GTTCTACTTCTTAAAGCTGC+TGG 0.386964 3_1:+71148803 Msa0372570:CDS
GAGAGGTGGGAAGGGAAAGG+GGG 0.391568 3_1:-71148319 None:intergenic
TACAACAATTGCTTCTGCTT+GGG 0.394575 3_1:-71150313 None:intergenic
TTGAGAGGTGGGAAGGGAAA+GGG 0.401348 3_1:-71148321 None:intergenic
TTGTTGTGTAGGGGTGGAAA+AGG 0.402114 3_1:+71150117 Msa0372570:intron
TTTCTTTGCTTTGCCACCAC+CGG 0.406080 3_1:-71148381 None:intergenic
CCCTTTGCTTTGCTTTGCTT+AGG 0.423357 3_1:+71148165 Msa0372570:five_prime_UTR
TTCAACGGGAATGATATAAC+CGG 0.425199 3_1:-71148635 None:intergenic
AGAGGTGGGAAGGGAAAGGG+GGG 0.428908 3_1:-71148318 None:intergenic
TTCTGCTTGGGTTCAAGAAT+AGG 0.432814 3_1:-71150301 None:intergenic
TTCTTTGCTTTGCCACCACC+GGG 0.435691 3_1:-71148380 None:intergenic
CACACCAAGTACCAGCTTTG+TGG 0.444391 3_1:-71150512 None:intergenic
ACCGGCTCCACCGGTTGGAC+CGG 0.445154 3_1:+71148543 Msa0372570:CDS
AATTGCTTCTGAGAAGTTGC+CGG 0.445935 3_1:+71150198 Msa0372570:CDS
GCCGGTCCAACCGGTGGAGC+CGG 0.447208 3_1:-71148544 None:intergenic
TTACAACAATTGCTTCTGCT+TGG 0.457628 3_1:-71150314 None:intergenic
ATAAAGCTGGCTCTTGAAGC+CGG 0.458425 3_1:+71148511 Msa0372570:CDS
GAACCAAGAGCCGGTCCAAC+CGG 0.467333 3_1:-71148553 None:intergenic
GTAAGTAAAGGAGTTCAATC+AGG 0.469629 3_1:+71148108 Msa0372570:five_prime_UTR
GCAGGCACAGCGGCAAATAT+GGG 0.470157 3_1:+71150262 Msa0372570:CDS
TGGACCGGCTCTTGGTTCAA+AGG 0.470221 3_1:+71148558 Msa0372570:CDS
TAGGATTCAACTGAATTCAA+TGG 0.472708 3_1:+71148184 Msa0372570:exon
TCAAAGACAGTGATTTCAAC+GGG 0.477736 3_1:-71148649 None:intergenic
AGTAGAAAACATAGAAGAAG+AGG 0.489977 3_1:-71148246 None:intergenic
TGTTGTGTAGGGGTGGAAAA+GGG 0.492679 3_1:+71150118 Msa0372570:intron
TCAGCCACAAAGCTGGTACT+TGG 0.497555 3_1:+71150508 Msa0372570:three_prime_UTR
GGACCGGCTCTTGGTTCAAA+GGG 0.498892 3_1:+71148559 Msa0372570:CDS
ATGGTCTCACAATTTAAGTC+CGG 0.511904 3_1:-71150217 None:intergenic
ATTAATATCAGCCACAAAGC+TGG 0.515910 3_1:+71150501 Msa0372570:three_prime_UTR
TTTGAGAGGTGGGAAGGGAA+AGG 0.518269 3_1:-71148322 None:intergenic
GCTCCTCCCAAACCCGGTGG+TGG 0.522421 3_1:+71148368 Msa0372570:CDS
TAAAGCTGGCTCTTGAAGCC+GGG 0.523483 3_1:+71148512 Msa0372570:CDS
GAAGGCGACACCGGCTCCAC+CGG 0.524077 3_1:+71148534 Msa0372570:CDS
ACCGGGTTTGGGAGGAGCCA+TGG 0.525469 3_1:-71148363 None:intergenic
GGAAATTGAAGAGTAAGTAA+AGG 0.526405 3_1:+71148096 Msa0372570:five_prime_UTR
GCCATGGCTCCTCCCAAACC+CGG 0.532943 3_1:+71148362 Msa0372570:CDS
TTAAGAAGTAGAACAGAAGC+AGG 0.535760 3_1:-71148794 None:intergenic
TGAAGCCGGGAAGGCGACAC+CGG 0.536862 3_1:+71148525 Msa0372570:CDS
TTGCCACCACCGGGTTTGGG+AGG 0.539113 3_1:-71148371 None:intergenic
TGCACTGTTGTATTGTGGTG+TGG 0.539862 3_1:+71150626 Msa0372570:three_prime_UTR
CGACGGAGCGCAGAAGAGAG+TGG 0.540776 3_1:-71148210 None:intergenic
AGCGTCTTTGAGAGGTGGGA+AGG 0.541953 3_1:-71148328 None:intergenic
CACAAAGCTGGTACTTGGTG+TGG 0.544208 3_1:+71150513 Msa0372570:three_prime_UTR
TCATTTGCACTGTTGTATTG+TGG 0.547732 3_1:+71150621 Msa0372570:three_prime_UTR
TCCTAAGCAAAGCAAAGCAA+AGG 0.552966 3_1:-71148166 None:intergenic
ATATGATAGTAGTACTGTTG+TGG 0.554047 3_1:+71148075 None:intergenic
TTAAAGCGTCTTTGAGAGGT+GGG 0.557459 3_1:-71148332 None:intergenic
TTTAAAGCGTCTTTGAGAGG+TGG 0.557946 3_1:-71148333 None:intergenic
TGCTTGGGTTCAAGAATAGG+AGG 0.562010 3_1:-71150298 None:intergenic
GCGACACCGGCTCCACCGGT+TGG 0.574069 3_1:+71148538 Msa0372570:CDS
GCGTCTTTGAGAGGTGGGAA+GGG 0.575110 3_1:-71148327 None:intergenic
CCTAAGCAAAGCAAAGCAAA+GGG 0.575792 3_1:-71148165 None:intergenic
AGTGGTTGGAATCATAAAGC+TGG 0.577839 3_1:+71148498 Msa0372570:intron
ATCAAAGACAGTGATTTCAA+CGG 0.578769 3_1:-71148650 None:intergenic
AAAGGGTTCAAAAGACCCTA+AGG 0.579244 3_1:+71150135 Msa0372570:CDS
CCAAGAGCCGGTCCAACCGG+TGG 0.580423 3_1:-71148550 None:intergenic
TCAACGGGAATGATATAACC+GGG 0.582949 3_1:-71148634 None:intergenic
GCTGGCTCTTGAAGCCGGGA+AGG 0.585779 3_1:+71148516 Msa0372570:CDS
GGTGGTGGCAAAGCAAAGAA+AGG 0.594161 3_1:+71148383 Msa0372570:CDS
ACACCCTTTGAACCAAGAGC+CGG 0.596971 3_1:-71148562 None:intergenic
AATTCTCATAGCTGATTCGA+TGG 0.598811 3_1:-71150236 None:intergenic
ACGCTTTAAAATCACTGCCA+TGG 0.609370 3_1:+71148346 Msa0372570:CDS
TCAGCTATGAGAATTATAGC+AGG 0.610466 3_1:+71150244 Msa0372570:CDS
GAGGAAGAAGAACAAAGCGA+CGG 0.613228 3_1:-71148227 None:intergenic
AGAAGTAGAACAGAAGCAGG+TGG 0.625937 3_1:-71148791 None:intergenic
CTGTGTGATCTAGTACCACA+AGG 0.651524 3_1:-71150371 None:intergenic
GCTAGAACTGCTGATAAACC+CGG 0.652419 3_1:+71148616 Msa0372570:CDS
ATGGCTCCTCCCAAACCCGG+TGG 0.666423 3_1:+71148365 Msa0372570:CDS
AAACTATCCTTAAAACCCAG+TGG 0.696569 3_1:+71148275 Msa0372570:CDS
GAGAATTATAGCAGGCACAG+CGG 0.702772 3_1:+71150252 Msa0372570:CDS
CTTGTGGTACTAGATCACAC+AGG 0.786415 3_1:+71150372 Msa0372570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATAACATAATATCAAA+GGG - chr3_1:71148834-71148853 None:intergenic 15.0%
!! ATAACATAACATAATATCAA+AGG - chr3_1:71148835-71148854 None:intergenic 15.0%
!! TGAACTATATTAAAATTGTT+AGG + chr3_1:71149389-71149408 Msa0372570:intron 15.0%
!! ATACTGTATAAAAAAAAATC+AGG - chr3_1:71149854-71149873 None:intergenic 15.0%
!!! TATTTTGTTGTGTTATTTTC+AGG + chr3_1:71148739-71148758 Msa0372570:intron 20.0%
!! AACATAACATAATATCAAAG+GGG - chr3_1:71148833-71148852 None:intergenic 20.0%
!! ATTCTAACAAATTATATCAC+AGG - chr3_1:71148865-71148884 None:intergenic 20.0%
!! AGTTGTAATATATGAAACAT+AGG + chr3_1:71148957-71148976 Msa0372570:intron 20.0%
!!! ATTAATTTAGAGTAGAGTTA+AGG + chr3_1:71149292-71149311 Msa0372570:intron 20.0%
!! TATGTAATAGACTTTATAGT+TGG + chr3_1:71149871-71149890 Msa0372570:intron 20.0%
!! ATGTAATAGACTTTATAGTT+GGG + chr3_1:71149872-71149891 Msa0372570:intron 20.0%
! ATGAAATATAGCAATGACTA+GGG - chr3_1:71149241-71149260 None:intergenic 25.0%
! AATGAAATATAGCAATGACT+AGG - chr3_1:71149242-71149261 None:intergenic 25.0%
! CTCTAAATTAATGACATTTG+AGG - chr3_1:71149284-71149303 None:intergenic 25.0%
! AGGATCATTGAAACTTAAAT+AGG + chr3_1:71149312-71149331 Msa0372570:intron 25.0%
! GGATCATTGAAACTTAAATA+GGG + chr3_1:71149313-71149332 Msa0372570:intron 25.0%
! ATTGAAACTTAAATAGGGTA+AGG + chr3_1:71149318-71149337 Msa0372570:intron 25.0%
! CTAAATATCCAATATCAGTA+TGG - chr3_1:71149418-71149437 None:intergenic 25.0%
! AAATTGAATCACAGAGTAAA+TGG - chr3_1:71149490-71149509 None:intergenic 25.0%
!!! ATGATCTATTTGTTTTAAGC+TGG + chr3_1:71149517-71149536 Msa0372570:intron 25.0%
!! CACAGTATTTTACATATCAT+TGG - chr3_1:71149640-71149659 None:intergenic 25.0%
! ATTAAAACACCTAGTAAACA+GGG - chr3_1:71149768-71149787 None:intergenic 25.0%
! AAAAAAAATCAGGTACAGAA+AGG - chr3_1:71149844-71149863 None:intergenic 25.0%
! AAGATAGTAGCAGAAAATAT+TGG + chr3_1:71149902-71149921 Msa0372570:intron 25.0%
! AGATAGTAGCAGAAAATATT+GGG + chr3_1:71149903-71149922 Msa0372570:intron 25.0%
! AAAATGAAGCAGATATGTTA+AGG + chr3_1:71149993-71150012 Msa0372570:intron 25.0%
!!! TATTGGTTTGATAGATTATC+AGG + chr3_1:71150017-71150036 Msa0372570:intron 25.0%
GGAAATTGAAGAGTAAGTAA+AGG + chr3_1:71148096-71148115 Msa0372570:five_prime_UTR 30.0%
TAGGATTCAACTGAATTCAA+TGG + chr3_1:71148184-71148203 Msa0372570:exon 30.0%
AGTAGAAAACATAGAAGAAG+AGG - chr3_1:71148249-71148268 None:intergenic 30.0%
!!! GGTTTTAAGGATAGTTTAAG+AGG - chr3_1:71148272-71148291 None:intergenic 30.0%
!! TTCAAAGGGTGTTAACATTA+TGG + chr3_1:71148573-71148592 Msa0372570:CDS 30.0%
ATCAAAGACAGTGATTTCAA+CGG - chr3_1:71148653-71148672 None:intergenic 30.0%
ATTTACTAGAGATGCATTAG+TGG - chr3_1:71148917-71148936 None:intergenic 30.0%
CTAGTAAATAAGCCTGTTAT+TGG + chr3_1:71148928-71148947 Msa0372570:intron 30.0%
AAGTGATTGTATGTAATGAC+TGG + chr3_1:71149045-71149064 Msa0372570:intron 30.0%
GCTAACTATAAGACACTATT+GGG + chr3_1:71149136-71149155 Msa0372570:intron 30.0%
CTAATGACTAATAACTTTCG+TGG - chr3_1:71149192-71149211 None:intergenic 30.0%
GAAAGTTATTAGTCATTAGC+TGG + chr3_1:71149193-71149212 Msa0372570:intron 30.0%
ATTAGTCATTAGCTGGAATT+TGG + chr3_1:71149200-71149219 Msa0372570:intron 30.0%
! AAATTAATGACATTTGAGGC+AGG - chr3_1:71149280-71149299 None:intergenic 30.0%
ATATAGTTCACTTAGTTGCA+AGG - chr3_1:71149379-71149398 None:intergenic 30.0%
! TTTTAAGCTGGATCTAATCA+AGG + chr3_1:71149529-71149548 Msa0372570:intron 30.0%
TTTAAGCTGGATCTAATCAA+GGG + chr3_1:71149530-71149549 Msa0372570:intron 30.0%
!!! AGGGAATGAGATTTTTTTAG+TGG + chr3_1:71149692-71149711 Msa0372570:intron 30.0%
!!! TTTTTTAGTGGTTACATTCG+AGG + chr3_1:71149704-71149723 Msa0372570:intron 30.0%
TTAAAACACCTAGTAAACAG+GGG - chr3_1:71149767-71149786 None:intergenic 30.0%
CATTAAAACACCTAGTAAAC+AGG - chr3_1:71149769-71149788 None:intergenic 30.0%
!! CTGTTTACTAGGTGTTTTAA+TGG + chr3_1:71149767-71149786 Msa0372570:intron 30.0%
!!! TTACTAGGTGTTTTAATGGA+TGG + chr3_1:71149771-71149790 Msa0372570:intron 30.0%
!!! AGGTAAGTTTTGTTCAAGAT+GGG - chr3_1:71149824-71149843 None:intergenic 30.0%
!!! AAGGTAAGTTTTGTTCAAGA+TGG - chr3_1:71149825-71149844 None:intergenic 30.0%
AGCAGATATGTTAAGGTTAT+TGG + chr3_1:71150000-71150019 Msa0372570:intron 30.0%
TCCAAACTCTATTATACTGA+TGG + chr3_1:71150088-71150107 Msa0372570:intron 30.0%
TCCATCAGTATAATAGAGTT+TGG - chr3_1:71150092-71150111 None:intergenic 30.0%
GTAAGTAAAGGAGTTCAATC+AGG + chr3_1:71148108-71148127 Msa0372570:five_prime_UTR 35.0%
GGGAAGTTGTTTGGATAAAA+TGG - chr3_1:71148148-71148167 None:intergenic 35.0%
AAACTATCCTTAAAACCCAG+TGG + chr3_1:71148275-71148294 Msa0372570:CDS 35.0%
!!! GATTTTAAAGCGTCTTTGAG+AGG - chr3_1:71148339-71148358 None:intergenic 35.0%
TTAGAACATGTTTGTGTCTG+TGG + chr3_1:71148470-71148489 Msa0372570:intron 35.0%
TTCAACGGGAATGATATAAC+CGG - chr3_1:71148638-71148657 None:intergenic 35.0%
TCAAAGACAGTGATTTCAAC+GGG - chr3_1:71148652-71148671 None:intergenic 35.0%
TTAAGAAGTAGAACAGAAGC+AGG - chr3_1:71148797-71148816 None:intergenic 35.0%
ACAACTTGTAGACCAATAAC+AGG - chr3_1:71148943-71148962 None:intergenic 35.0%
TACCATAGTCTATATAGTGC+CGG - chr3_1:71149008-71149027 None:intergenic 35.0%
ATACCTTCAGTATAAAGTGC+CGG + chr3_1:71149096-71149115 Msa0372570:intron 35.0%
GGCTAACTATAAGACACTAT+TGG + chr3_1:71149135-71149154 Msa0372570:intron 35.0%
ACTATAAGACACTATTGGGT+CGG + chr3_1:71149140-71149159 Msa0372570:intron 35.0%
TTAGGCATCCATACTGATAT+TGG + chr3_1:71149407-71149426 Msa0372570:intron 35.0%
AGAATTTCTCCTACACTACA+AGG + chr3_1:71149672-71149691 Msa0372570:intron 35.0%
GAATTTCTCCTACACTACAA+GGG + chr3_1:71149673-71149692 Msa0372570:intron 35.0%
! ACATTCGAGGTATTCTTACA+AGG + chr3_1:71149717-71149736 Msa0372570:intron 35.0%
! TCAAGATGGGGAGATTTTAA+TGG - chr3_1:71149811-71149830 None:intergenic 35.0%
!!! GGTAAGTTTTGTTCAAGATG+GGG - chr3_1:71149823-71149842 None:intergenic 35.0%
GTCTTGAAATATGATCAGTC+TGG + chr3_1:71149945-71149964 Msa0372570:intron 35.0%
!! ATGGACTGATTTGTTGTGTA+GGG + chr3_1:71150107-71150126 Msa0372570:intron 35.0%
!!! TTCCTACTTTTTGTGCCTTA+GGG - chr3_1:71150153-71150172 None:intergenic 35.0%
!!! TTTCCTACTTTTTGTGCCTT+AGG - chr3_1:71150154-71150173 None:intergenic 35.0%
ATGGTCTCACAATTTAAGTC+CGG - chr3_1:71150220-71150239 None:intergenic 35.0%
!! AATTCTCATAGCTGATTCGA+TGG - chr3_1:71150239-71150258 None:intergenic 35.0%
TCAGCTATGAGAATTATAGC+AGG + chr3_1:71150244-71150263 Msa0372570:CDS 35.0%
TACAACAATTGCTTCTGCTT+GGG - chr3_1:71150316-71150335 None:intergenic 35.0%
TTACAACAATTGCTTCTGCT+TGG - chr3_1:71150317-71150336 None:intergenic 35.0%
! AAGGACTTTTTACACTTGGA+GGG - chr3_1:71150355-71150374 None:intergenic 35.0%
ATTAATATCAGCCACAAAGC+TGG + chr3_1:71150501-71150520 Msa0372570:three_prime_UTR 35.0%
TCATTTGCACTGTTGTATTG+TGG + chr3_1:71150621-71150640 Msa0372570:three_prime_UTR 35.0%
CAAAGCAAAGGGAAGTTGTT+TGG - chr3_1:71148157-71148176 None:intergenic 40.0%
CCTAAGCAAAGCAAAGCAAA+GGG - chr3_1:71148168-71148187 None:intergenic 40.0%
TCCTAAGCAAAGCAAAGCAA+AGG - chr3_1:71148169-71148188 None:intergenic 40.0%
!!! AAGGGGGGTTTTGTTTTGAA+GGG - chr3_1:71148306-71148325 None:intergenic 40.0%
!!! AAAGGGGGGTTTTGTTTTGA+AGG - chr3_1:71148307-71148326 None:intergenic 40.0%
! TTAAAGCGTCTTTGAGAGGT+GGG - chr3_1:71148335-71148354 None:intergenic 40.0%
! TTTAAAGCGTCTTTGAGAGG+TGG - chr3_1:71148336-71148355 None:intergenic 40.0%
!! ACGCTTTAAAATCACTGCCA+TGG + chr3_1:71148346-71148365 Msa0372570:CDS 40.0%
AGTGGTTGGAATCATAAAGC+TGG + chr3_1:71148498-71148517 Msa0372570:intron 40.0%
TCAACGGGAATGATATAACC+GGG - chr3_1:71148637-71148656 None:intergenic 40.0%
GTTCTACTTCTTAAAGCTGC+TGG + chr3_1:71148803-71148822 Msa0372570:CDS 40.0%
AGACACGTGTTCCAATACTT+GGG + chr3_1:71149072-71149091 Msa0372570:intron 40.0%
! TAATGACATTTGAGGCAGGA+AGG - chr3_1:71149276-71149295 None:intergenic 40.0%
ATCTCATTCCCTTGTAGTGT+AGG - chr3_1:71149684-71149703 None:intergenic 40.0%
AAGGCTACATCCACTACTTA+TGG + chr3_1:71149736-71149755 Msa0372570:intron 40.0%
AGATTCACTCGTAAACAGGA+TGG - chr3_1:71150056-71150075 None:intergenic 40.0%
CACTAGATTCACTCGTAAAC+AGG - chr3_1:71150060-71150079 None:intergenic 40.0%
!! GATGGACTGATTTGTTGTGT+AGG + chr3_1:71150106-71150125 Msa0372570:intron 40.0%
!! TGGACTGATTTGTTGTGTAG+GGG + chr3_1:71150108-71150127 Msa0372570:intron 40.0%
AAAGGGTTCAAAAGACCCTA+AGG + chr3_1:71150135-71150154 Msa0372570:CDS 40.0%
! AATTGCTTCTGAGAAGTTGC+CGG + chr3_1:71150198-71150217 Msa0372570:CDS 40.0%
TTCTGCTTGGGTTCAAGAAT+AGG - chr3_1:71150304-71150323 None:intergenic 40.0%
! CAAGGACTTTTTACACTTGG+AGG - chr3_1:71150356-71150375 None:intergenic 40.0%
! CCACAAGGACTTTTTACACT+TGG - chr3_1:71150359-71150378 None:intergenic 40.0%
CCAAGTGTAAAAAGTCCTTG+TGG + chr3_1:71150356-71150375 Msa0372570:three_prime_UTR 40.0%
CCCTTTGCTTTGCTTTGCTT+AGG + chr3_1:71148165-71148184 Msa0372570:five_prime_UTR 45.0%
GAGGAAGAAGAACAAAGCGA+CGG - chr3_1:71148230-71148249 None:intergenic 45.0%
TTTCTTTGCTTTGCCACCAC+CGG - chr3_1:71148384-71148403 None:intergenic 45.0%
TTTGTGTCTGTGGCAAACAG+TGG + chr3_1:71148480-71148499 Msa0372570:intron 45.0%
! ATAAAGCTGGCTCTTGAAGC+CGG + chr3_1:71148511-71148530 Msa0372570:CDS 45.0%
GCTAGAACTGCTGATAAACC+CGG + chr3_1:71148616-71148635 Msa0372570:CDS 45.0%
AGAAGTAGAACAGAAGCAGG+TGG - chr3_1:71148794-71148813 None:intergenic 45.0%
CACCGGCACTATATAGACTA+TGG + chr3_1:71149003-71149022 Msa0372570:intron 45.0%
CAGACACGTGTTCCAATACT+TGG + chr3_1:71149071-71149090 Msa0372570:intron 45.0%
! CTGAAGGTATGCCCAAGTAT+TGG - chr3_1:71149086-71149105 None:intergenic 45.0%
GCCTTACAACTATGTAGCAC+CGG - chr3_1:71149118-71149137 None:intergenic 45.0%
GCTGGATCTAATCAAGGGTT+AGG + chr3_1:71149535-71149554 Msa0372570:intron 45.0%
!! ACTGATTTGTTGTGTAGGGG+TGG + chr3_1:71150111-71150130 Msa0372570:intron 45.0%
TTGTTGTGTAGGGGTGGAAA+AGG + chr3_1:71150117-71150136 Msa0372570:intron 45.0%
TGTTGTGTAGGGGTGGAAAA+GGG + chr3_1:71150118-71150137 Msa0372570:intron 45.0%
GACCCTAAGGCACAAAAAGT+AGG + chr3_1:71150148-71150167 Msa0372570:CDS 45.0%
GAGAATTATAGCAGGCACAG+CGG + chr3_1:71150252-71150271 Msa0372570:CDS 45.0%
TGCTTGGGTTCAAGAATAGG+AGG - chr3_1:71150301-71150320 None:intergenic 45.0%
CTGTGTGATCTAGTACCACA+AGG - chr3_1:71150374-71150393 None:intergenic 45.0%
CTTGTGGTACTAGATCACAC+AGG + chr3_1:71150372-71150391 Msa0372570:three_prime_UTR 45.0%
TGCACTGTTGTATTGTGGTG+TGG + chr3_1:71150626-71150645 Msa0372570:three_prime_UTR 45.0%
!! GTATTTAAATTTAAATATAA+TGG - chr3_1:71150470-71150489 None:intergenic 5.0%
!! TTTTGAAGGGAGACGCCACT+GGG - chr3_1:71148293-71148312 None:intergenic 50.0%
TTGAGAGGTGGGAAGGGAAA+GGG - chr3_1:71148324-71148343 None:intergenic 50.0%
TTTGAGAGGTGGGAAGGGAA+AGG - chr3_1:71148325-71148344 None:intergenic 50.0%
TTCTTTGCTTTGCCACCACC+GGG - chr3_1:71148383-71148402 None:intergenic 50.0%
! GGTGGTGGCAAAGCAAAGAA+AGG + chr3_1:71148383-71148402 Msa0372570:CDS 50.0%
TGTCTGTGGCAAACAGTGGT+TGG + chr3_1:71148484-71148503 Msa0372570:intron 50.0%
! TAAAGCTGGCTCTTGAAGCC+GGG + chr3_1:71148512-71148531 Msa0372570:CDS 50.0%
ACACCCTTTGAACCAAGAGC+CGG - chr3_1:71148565-71148584 None:intergenic 50.0%
CATAGGCACCACACTAGATG+CGG + chr3_1:71148974-71148993 Msa0372570:intron 50.0%
! GCACCGGCACTTTATACTGA+AGG - chr3_1:71149102-71149121 None:intergenic 50.0%
!! GCCGGTGCTACATAGTTGTA+AGG + chr3_1:71149114-71149133 Msa0372570:intron 50.0%
CACTATTGGGTCGGCATGTT+TGG + chr3_1:71149149-71149168 Msa0372570:intron 50.0%
! TGACATTTGAGGCAGGAAGG+AGG - chr3_1:71149273-71149292 None:intergenic 50.0%
AGGGGTTCAGCCATAAGTAG+TGG - chr3_1:71149749-71149768 None:intergenic 50.0%
TGGCTGAACCCCTGTTTACT+AGG + chr3_1:71149756-71149775 Msa0372570:intron 50.0%
TCAGCCACAAAGCTGGTACT+TGG + chr3_1:71150508-71150527 Msa0372570:three_prime_UTR 50.0%
CACACCAAGTACCAGCTTTG+TGG - chr3_1:71150515-71150534 None:intergenic 50.0%
! CACAAAGCTGGTACTTGGTG+TGG + chr3_1:71150513-71150532 Msa0372570:three_prime_UTR 50.0%
! GGAGACGCCACTGGGTTTTA+AGG - chr3_1:71148285-71148304 None:intergenic 55.0%
!!! GTTTTGAAGGGAGACGCCAC+TGG - chr3_1:71148294-71148313 None:intergenic 55.0%
TGAGAGGTGGGAAGGGAAAG+GGG - chr3_1:71148323-71148342 None:intergenic 55.0%
! GCGTCTTTGAGAGGTGGGAA+GGG - chr3_1:71148330-71148349 None:intergenic 55.0%
! AGCGTCTTTGAGAGGTGGGA+AGG - chr3_1:71148331-71148350 None:intergenic 55.0%
! TGGACCGGCTCTTGGTTCAA+AGG + chr3_1:71148558-71148577 Msa0372570:CDS 55.0%
! GGACCGGCTCTTGGTTCAAA+GGG + chr3_1:71148559-71148578 Msa0372570:CDS 55.0%
TGTCGTGTCCGCATCTAGTG+TGG - chr3_1:71148985-71149004 None:intergenic 55.0%
ACTAGATGCGGACACGACAC+CGG + chr3_1:71148986-71149005 Msa0372570:intron 55.0%
AGCAGGCACAGCGGCAAATA+TGG + chr3_1:71150261-71150280 Msa0372570:CDS 55.0%
GCAGGCACAGCGGCAAATAT+GGG + chr3_1:71150262-71150281 Msa0372570:CDS 55.0%
AGAGGTGGGAAGGGAAAGGG+GGG - chr3_1:71148321-71148340 None:intergenic 60.0%
GAGAGGTGGGAAGGGAAAGG+GGG - chr3_1:71148322-71148341 None:intergenic 60.0%
GCTTTGCCACCACCGGGTTT+GGG - chr3_1:71148377-71148396 None:intergenic 60.0%
TGCTTTGCCACCACCGGGTT+TGG - chr3_1:71148378-71148397 None:intergenic 60.0%
GAACCAAGAGCCGGTCCAAC+CGG - chr3_1:71148556-71148575 None:intergenic 60.0%
CGACGGAGCGCAGAAGAGAG+TGG - chr3_1:71148213-71148232 None:intergenic 65.0%
GCCATGGCTCCTCCCAAACC+CGG + chr3_1:71148362-71148381 Msa0372570:CDS 65.0%
ACCGGGTTTGGGAGGAGCCA+TGG - chr3_1:71148366-71148385 None:intergenic 65.0%
ATGGCTCCTCCCAAACCCGG+TGG + chr3_1:71148365-71148384 Msa0372570:CDS 65.0%
TTGCCACCACCGGGTTTGGG+AGG - chr3_1:71148374-71148393 None:intergenic 65.0%
! GCTGGCTCTTGAAGCCGGGA+AGG + chr3_1:71148516-71148535 Msa0372570:CDS 65.0%
TGAAGCCGGGAAGGCGACAC+CGG + chr3_1:71148525-71148544 Msa0372570:CDS 65.0%
GGGTCGGCATGTTTGGCCAG+CGG + chr3_1:71149156-71149175 Msa0372570:intron 65.0%
TCGTGGTGCGTAGTTGCCGC+TGG - chr3_1:71149175-71149194 None:intergenic 65.0%
GCTCCTCCCAAACCCGGTGG+TGG + chr3_1:71148368-71148387 Msa0372570:CDS 70.0%
!! TGGAGCCGGTGTCGCCTTCC+CGG - chr3_1:71148533-71148552 None:intergenic 70.0%
!! GAAGGCGACACCGGCTCCAC+CGG + chr3_1:71148534-71148553 Msa0372570:CDS 70.0%
! ACCGGCTCCACCGGTTGGAC+CGG + chr3_1:71148543-71148562 Msa0372570:CDS 70.0%
CCAAGAGCCGGTCCAACCGG+TGG - chr3_1:71148553-71148572 None:intergenic 70.0%
! CCACCGGTTGGACCGGCTCT+TGG + chr3_1:71148550-71148569 Msa0372570:CDS 70.0%
!! GCGACACCGGCTCCACCGGT+TGG + chr3_1:71148538-71148557 Msa0372570:CDS 75.0%
GCCGGTCCAACCGGTGGAGC+CGG - chr3_1:71148547-71148566 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71148081 71150690 71148081 ID=Msa0372570;Name=Msa0372570
chr3_1 mRNA 71148081 71150690 71148081 ID=Msa0372570-mRNA-1;Parent=Msa0372570;Name=Msa0372570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|1|1|1|1|1|4|354|215
chr3_1 exon 71148081 71148404 71148081 ID=Msa0372570-mRNA-1:exon:15596;Parent=Msa0372570-mRNA-1
chr3_1 exon 71148500 71148672 71148500 ID=Msa0372570-mRNA-1:exon:15597;Parent=Msa0372570-mRNA-1
chr3_1 exon 71148761 71148824 71148761 ID=Msa0372570-mRNA-1:exon:15598;Parent=Msa0372570-mRNA-1
chr3_1 exon 71150128 71150690 71150128 ID=Msa0372570-mRNA-1:exon:15599;Parent=Msa0372570-mRNA-1
chr3_1 five_prime_UTR 71148081 71148202 71148081 ID=Msa0372570-mRNA-1:five_prime_utr;Parent=Msa0372570-mRNA-1
chr3_1 CDS 71148203 71148404 71148203 ID=Msa0372570-mRNA-1:cds;Parent=Msa0372570-mRNA-1
chr3_1 CDS 71148500 71148672 71148500 ID=Msa0372570-mRNA-1:cds;Parent=Msa0372570-mRNA-1
chr3_1 CDS 71148761 71148824 71148761 ID=Msa0372570-mRNA-1:cds;Parent=Msa0372570-mRNA-1
chr3_1 CDS 71150128 71150336 71150128 ID=Msa0372570-mRNA-1:cds;Parent=Msa0372570-mRNA-1
chr3_1 three_prime_UTR 71150337 71150690 71150337 ID=Msa0372570-mRNA-1:three_prime_utr;Parent=Msa0372570-mRNA-1
Gene Sequence

>Msa0372570

ATGGCGTCCACTCTCTTCTGCGCTCCGTCGCTTTGTTCTTCTTCCTCTTCTTCTATGTTTTCTACTCCTCTTAAACTATCCTTAAAACCCAGTGGCGTCTCCCTTCAAAACAAAACCCCCCTTTCCCTTCCCACCTCTCAAAGACGCTTTAAAATCACTGCCATGGCTCCTCCCAAACCCGGTGGTGGCAAAGCAAAGAAAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAGGGTGTTAACATTATGGCTTTCTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCTAAGGCACAAAAAGTAGGAAAAGTCACAGTTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTAAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

Protein sequence

>Msa0372570

MASTLFCAPSLCSSSSSSMFSTPLKLSLKPSGVSLQNKTPLSLPTSQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTVDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL*