AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1229670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229670 MtrunA17_Chr8g0337211 98.750 400 3 2 1 399 1 399 0.0 806
Msa1229670 MtrunA17_Chr4g0054901 81.461 356 57 3 32 387 52 398 0.0 592
Msa1229670 MtrunA17_Chr5g0412911 25.574 305 201 12 75 361 83 379 5.72e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1229670 AT2G44530.1 80.769 390 65 3 17 399 8 394 0.0 638
Msa1229670 AT2G44530.2 81.026 390 63 4 17 399 8 393 0.0 636
Msa1229670 AT2G35390.2 79.245 371 66 5 20 387 35 397 0.0 591
Msa1229670 AT1G32380.1 85.106 329 45 2 61 387 68 394 0.0 588
Msa1229670 AT2G35390.4 81.766 351 55 3 39 387 3 346 0.0 586
Msa1229670 AT2G35390.1 81.766 351 55 3 39 387 3 346 0.0 586
Msa1229670 AT1G32380.2 90.909 286 26 0 102 387 1 286 0.0 550
Msa1229670 AT2G35390.3 77.918 317 59 5 20 333 35 343 7.16e-174 489
Msa1229670 AT1G10700.1 25.786 318 209 13 42 341 54 362 5.08e-17 82.8
Msa1229670 AT2G42910.1 27.329 322 205 15 78 379 23 335 1.38e-14 74.7

Find 104 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCTTACATGTATTGATTT+TGG 0.117329 8_2:-5529082 Msa1229670:three_prime_UTR
ACTGCAGTCATTCCATATTT+TGG 0.133514 8_2:-5533338 Msa1229670:CDS
AAACACACTGTAGGTATATT+TGG 0.192321 8_2:-5529207 Msa1229670:three_prime_UTR
ATAGGAAATTGCATGTTATA+TGG 0.209711 8_2:-5533546 Msa1229670:intron
CCTCCACTCTGGGCAGTCTA+TGG 0.245181 8_2:-5532353 Msa1229670:CDS
CTACTGATAAGACAGTTAAT+TGG 0.262391 8_2:+5529845 None:intergenic
GCTCTAGCATATCCAAAATA+TGG 0.280293 8_2:+5533326 None:intergenic
ATGTTATATGGGCCTGGATC+TGG 0.313034 8_2:-5533534 Msa1229670:CDS
ATCTGAACAAATAGTCTTGC+TGG 0.323128 8_2:+5531854 None:intergenic
AATTGAACCTTATTCCAGTT+TGG 0.332024 8_2:-5529391 Msa1229670:CDS
GTTTGGCGCCACTAGATAAC+TGG 0.333316 8_2:+5535021 None:intergenic
TCGATGCCCAAACTGGAATA+AGG 0.340609 8_2:+5529384 None:intergenic
ACCCCAAACAGCTCTCTAAA+AGG 0.342830 8_2:+5529247 None:intergenic
ATTGAACCTTATTCCAGTTT+GGG 0.353000 8_2:-5529390 Msa1229670:CDS
TACTGATAAGACAGTTAATT+GGG 0.362406 8_2:+5529846 None:intergenic
CTTATCAGTAGCAAACCTTC+TGG 0.366216 8_2:-5529833 Msa1229670:CDS
ATGCAAAAGAGCTGCTCCTT+TGG 0.367206 8_2:+5530396 None:intergenic
AATTTGATTGGTGATGTAAA+AGG 0.370527 8_2:-5531559 Msa1229670:CDS
TCAACTGAATATTCAGTTAC+CGG 0.386620 8_2:-5535061 Msa1229670:CDS
TCCAACTGCAAGAGAGTGTC+AGG 0.388820 8_2:-5533469 Msa1229670:CDS
TGTAGTACAATCTGTCAATC+TGG 0.401957 8_2:-5535104 Msa1229670:CDS
CTTGCATGTGACCTCCACTC+TGG 0.408654 8_2:-5532364 Msa1229670:CDS
GCAAGGTAATCGAGTATAAC+AGG 0.410223 8_2:+5531876 None:intergenic
TGTTCAATCGATGCCCAAAC+TGG 0.412006 8_2:+5529377 None:intergenic
TAGGAAATTGCATGTTATAT+GGG 0.416483 8_2:-5533545 Msa1229670:CDS
ACCTTCTGGGCGAGACCATA+TGG 0.425438 8_2:-5529819 Msa1229670:CDS
TCCCGCGAATGAGAATCTTA+TGG 0.430669 8_2:-5533411 Msa1229670:CDS
AGATCATGAATACGAGTGTT+TGG 0.434509 8_2:+5535004 None:intergenic
TGTCCATACACATGATCAAC+TGG 0.436657 8_2:+5532316 None:intergenic
GCAAATTTAATTACAGAAGC+TGG 0.437018 8_2:-5532400 Msa1229670:CDS
AACAAATAGTCTTGCTGGCA+AGG 0.449627 8_2:+5531859 None:intergenic
ATTCCAGTTGATCATGTGTA+TGG 0.449841 8_2:-5532319 Msa1229670:CDS
CTAGCTACACCACCAACATC+TGG 0.450859 8_2:+5531813 None:intergenic
TAGGTATATTTGGAATTCAC+AGG 0.455256 8_2:-5529197 Msa1229670:three_prime_UTR
TTGCATGTGACCTCCACTCT+GGG 0.471838 8_2:-5532363 Msa1229670:CDS
GAAAGAAGATTGAAGTAGAG+TGG 0.474188 8_2:+5535283 None:intergenic
GTAAACGGTTACGCTAAATT+CGG 0.477081 8_2:+5535334 None:intergenic
TACCTGAGCGAGTGCGGGAT+TGG 0.477160 8_2:+5534943 None:intergenic
TTGCAGGTGATGAATTTGAT+TGG 0.480553 8_2:-5531571 Msa1229670:intron
CAAAATTATACTCATCAAGC+GGG 0.484934 8_2:+5529155 None:intergenic
CGACGGCGGCGGCGTTGCGG+AGG 0.486887 8_2:+5535216 None:intergenic
TTATCAGTAGCAAACCTTCT+GGG 0.489700 8_2:-5529832 Msa1229670:CDS
CAATCTGTCAATCTGGAAAA+CGG 0.495351 8_2:-5535097 Msa1229670:CDS
CTGAGCGAGTGCGGGATTGG+CGG 0.495771 8_2:+5534946 None:intergenic
ATGGCGTAACACTCAGTAAA+CGG 0.505357 8_2:+5535319 None:intergenic
TTTGGCAGAAGCTCTCCTGC+AGG 0.516016 8_2:+5533367 None:intergenic
AATTGCATGTTATATGGGCC+TGG 0.517043 8_2:-5533540 Msa1229670:CDS
TGTTATATGGGCCTGGATCT+GGG 0.520595 8_2:-5533533 Msa1229670:CDS
ACAAAATTATACTCATCAAG+CGG 0.522286 8_2:+5529154 None:intergenic
CCCTGACACTCTCTTGCAGT+TGG 0.525864 8_2:+5533468 None:intergenic
TCCATAAGATTCTCATTCGC+GGG 0.527102 8_2:+5533410 None:intergenic
CTCCATAAGATTCTCATTCG+CGG 0.529400 8_2:+5533409 None:intergenic
CTTGACAATCTCTCTATAGC+AGG 0.530606 8_2:+5529931 None:intergenic
TCGTAATGATTGATGCCTGC+AGG 0.530985 8_2:-5533382 Msa1229670:CDS
AAAAGGAAAGGTAGCAGTGA+TGG 0.532343 8_2:-5531542 Msa1229670:CDS
CGACGACGGCGGCGGCGTTG+CGG 0.533290 8_2:+5535213 None:intergenic
GTTACTGCAGTATCATAAGC+TGG 0.539533 8_2:+5529328 None:intergenic
GATACTGCAGTAACAAGAAG+TGG 0.540969 8_2:-5529319 Msa1229670:three_prime_UTR
AGGGAGAAACGAGGAGTGAT+CGG 0.542953 8_2:+5535236 None:intergenic
CAACTACTGTTTCAGACTCA+AGG 0.542966 8_2:-5532451 Msa1229670:intron
AGTTGATCATGTGTATGGAC+AGG 0.543298 8_2:-5532314 Msa1229670:intron
GACGGCGGCGGCGTTGCGGA+GGG 0.548828 8_2:+5535217 None:intergenic
AAGTAGTTCTTCTCTGCTAG+TGG 0.549029 8_2:+5529871 None:intergenic
GATGATACCTGAGCGAGTGC+GGG 0.549570 8_2:+5534938 None:intergenic
ATTGTTGATAAAAGACGTCA+TGG 0.550483 8_2:-5531747 Msa1229670:CDS
ATATGCTAGAGCTGATAGAA+AGG 0.559762 8_2:-5533315 Msa1229670:intron
GATTGGTGATGTAAAAGGAA+AGG 0.565352 8_2:-5531554 Msa1229670:CDS
TCATTCGCGGGAGGACATGT+AGG 0.571769 8_2:+5533422 None:intergenic
AAGAGCTGCTCCTTTGGCGA+TGG 0.573536 8_2:+5530402 None:intergenic
GGATGATACCTGAGCGAGTG+CGG 0.580736 8_2:+5534937 None:intergenic
GGGAATTGAACTTGTACCAC+CGG 0.581259 8_2:+5535042 None:intergenic
GCCATATGGTCTCGCCCAGA+AGG 0.586947 8_2:+5529818 None:intergenic
TTCAATTCCCAGTTATCTAG+TGG 0.587565 8_2:-5535029 Msa1229670:CDS
GAGTGGACATGATGAATGAA+TGG 0.590267 8_2:+5535300 None:intergenic
ATAGTTGTCTCGCCAGATGT+TGG 0.591097 8_2:-5531825 Msa1229670:CDS
GTTACTTACGACGACGGCGG+CGG 0.591923 8_2:+5535205 None:intergenic
GACAATCTCTCTATAGCAGG+AGG 0.595468 8_2:+5529934 None:intergenic
GATGACATGATTGATACTGC+TGG 0.599761 8_2:-5531517 Msa1229670:intron
GTTGTCTCGCCAGATGTTGG+TGG 0.603849 8_2:-5531822 Msa1229670:CDS
GAATATTCAGTTGAACGGTA+CGG 0.605959 8_2:+5535070 None:intergenic
TAACTGAATATTCAGTTGAA+CGG 0.606307 8_2:+5535065 None:intergenic
TAAGCTGGAACAGCAGAACA+TGG 0.615005 8_2:+5529343 None:intergenic
AACTACTGTTTCAGACTCAA+GGG 0.616461 8_2:-5532450 Msa1229670:intron
CTTATAGGGACCATCGCCAA+AGG 0.620442 8_2:-5530412 Msa1229670:intron
TTTGGCGCCACTAGATAACT+GGG 0.632575 8_2:+5535022 None:intergenic
CCATAGACTGCCCAGAGTGG+AGG 0.638297 8_2:+5532353 None:intergenic
ACTGATAAGACAGTTAATTG+GGG 0.644887 8_2:+5529847 None:intergenic
AGGTATATTTGGAATTCACA+GGG 0.645236 8_2:-5529196 Msa1229670:three_prime_UTR
AGCCCATAGACTGCCCAGAG+TGG 0.655210 8_2:+5532350 None:intergenic
TCATGGGCATAATGTTGCCG+AGG 0.655448 8_2:-5531730 Msa1229670:intron
TTGGACATATATCTCCCCAT+CGG 0.659494 8_2:+5533487 None:intergenic
ATAAGATTCTCATTCGCGGG+AGG 0.659940 8_2:+5533413 None:intergenic
ACAATCTCTCTATAGCAGGA+GGG 0.668556 8_2:+5529935 None:intergenic
CAACTGCAAGAGAGTGTCAG+GGG 0.669938 8_2:-5533467 Msa1229670:CDS
CCAACTGCAAGAGAGTGTCA+GGG 0.672047 8_2:-5533468 Msa1229670:CDS
ACTGAATATTCAGTTACCGG+TGG 0.679249 8_2:-5535058 Msa1229670:CDS
CTGATAAGACAGTTAATTGG+GGG 0.686616 8_2:+5529848 None:intergenic
TTGTTGATAAAAGACGTCAT+GGG 0.699425 8_2:-5531746 Msa1229670:CDS
AAAATTATACTCATCAAGCG+GGG 0.700775 8_2:+5529156 None:intergenic
GCTATAGAGAGATTGTCAAG+CGG 0.702672 8_2:-5529928 Msa1229670:CDS
GAGAGAGTTACTTACGACGA+CGG 0.708624 8_2:+5535199 None:intergenic
AACTGCAAGAGAGTGTCAGG+GGG 0.717564 8_2:-5533466 Msa1229670:CDS
AGAGTTACTTACGACGACGG+CGG 0.740080 8_2:+5535202 None:intergenic
GCGTTGCGGAGGGAGAAACG+AGG 0.760496 8_2:+5535227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAGTGTTTATATTAT+AGG - chr8_2:5530441-5530460 Msa1229670:intron 10.0%
!! ATAAAATTTCAAATATCATT+AGG + chr8_2:5530733-5530752 None:intergenic 10.0%
!!! TTATTTTTTTACAAAATACT+TGG - chr8_2:5531587-5531606 Msa1229670:intron 10.0%
!! TAATAATTTATTTCAATTTG+TGG - chr8_2:5534048-5534067 Msa1229670:intron 10.0%
!! ATTATATTGAGATGTAATAT+AGG - chr8_2:5529483-5529502 Msa1229670:intron 15.0%
!!! CTATTTAAAGATTTTCTAAT+AGG + chr8_2:5530216-5530235 None:intergenic 15.0%
!! TAAATTGAGATGTAATATAT+TGG + chr8_2:5530331-5530350 None:intergenic 15.0%
!!! AGTTAACTTGATAATTTTTT+AGG - chr8_2:5530398-5530417 Msa1229670:CDS 15.0%
!! ATATATATCATCAAGAAAAA+GGG + chr8_2:5533120-5533139 None:intergenic 15.0%
!! AATATATATCATCAAGAAAA+AGG + chr8_2:5533121-5533140 None:intergenic 15.0%
!!! GATATATATTATTTTTCTAC+AGG - chr8_2:5533131-5533150 Msa1229670:intron 15.0%
!! AAGACAAATATAATTCAATT+TGG + chr8_2:5533390-5533409 None:intergenic 15.0%
!!! ATTATCTTTAGCTAAAATTT+TGG - chr8_2:5533801-5533820 Msa1229670:intron 15.0%
!!! AAATTGTTAATTTGTCTTAT+AGG - chr8_2:5533921-5533940 Msa1229670:intron 15.0%
!!! AATTGTTAATTTGTCTTATA+GGG - chr8_2:5533922-5533941 Msa1229670:intron 15.0%
!!! TCAAATTATTAAAAGTGTCT+GGG + chr8_2:5529682-5529701 None:intergenic 20.0%
!! TTCATAGTAATTATATGTGT+CGG - chr8_2:5529715-5529734 Msa1229670:intron 20.0%
!! TTTATCCTTATTATCGTATT+CGG + chr8_2:5529824-5529843 None:intergenic 20.0%
!! ACTTATGAACATAAACTTAT+AGG - chr8_2:5529971-5529990 Msa1229670:intron 20.0%
!! AGAATAATAACTGATTAGAA+TGG - chr8_2:5530122-5530141 Msa1229670:intron 20.0%
!!! TTATGTATAAGCTATTTCTA+TGG - chr8_2:5530486-5530505 Msa1229670:intron 20.0%
!!! CTATAAGTTGTTTTCATAAA+TGG - chr8_2:5530546-5530565 Msa1229670:intron 20.0%
!!! TTTCTGATTTGCATTTAAAT+AGG - chr8_2:5530784-5530803 Msa1229670:intron 20.0%
!!! ATAACTTGAATGTCATTTTT+AGG - chr8_2:5531200-5531219 Msa1229670:intron 20.0%
!!! ATGTAAATAAACTACCTTTT+TGG - chr8_2:5531653-5531672 Msa1229670:intron 20.0%
!! GGTCATATAAACAATAAAAT+AGG + chr8_2:5532260-5532279 None:intergenic 20.0%
!! AAGAAGATCAGAAATTTAAA+GGG + chr8_2:5532281-5532300 None:intergenic 20.0%
!!! AAAAGTATATTAACATACCT+CGG + chr8_2:5532638-5532657 None:intergenic 20.0%
!! GAGATTCAAAGTATAAATAA+GGG + chr8_2:5533098-5533117 None:intergenic 20.0%
!!! AAAGTTGCAAGATTTTTTTA+AGG + chr8_2:5533163-5533182 None:intergenic 20.0%
!!! TAACTTAATCTTGTCATTTT+AGG - chr8_2:5533227-5533246 Msa1229670:intron 20.0%
!! TATTAATCAGTCTATTCATT+TGG - chr8_2:5533774-5533793 Msa1229670:intron 20.0%
!! CAAATTAACAATTTATTGAG+CGG + chr8_2:5533915-5533934 None:intergenic 20.0%
!! TTCTGTAAAATAAGTTTAGT+TGG - chr8_2:5534586-5534605 Msa1229670:intron 20.0%
!!! CTATTCAAATACATCAATTT+TGG - chr8_2:5534682-5534701 Msa1229670:intron 20.0%
!! CTAGACTGTATTATTAATAA+TGG - chr8_2:5534750-5534769 Msa1229670:intron 20.0%
! TAACTGAATATTCAGTTGAA+CGG + chr8_2:5529286-5529305 None:intergenic 25.0%
!!! CTCAAATTATTAAAAGTGTC+TGG + chr8_2:5529683-5529702 None:intergenic 25.0%
! GTTACAAAAAATGTCTAGTT+TGG - chr8_2:5529891-5529910 Msa1229670:CDS 25.0%
! AAGTAGTAAAGAGTTGTTAT+AGG - chr8_2:5530148-5530167 Msa1229670:intron 25.0%
! TGTTATAGGAATTAGTTAGT+TGG - chr8_2:5530162-5530181 Msa1229670:intron 25.0%
! ATAGTATTCTCTAATGTGAA+AGG - chr8_2:5530284-5530303 Msa1229670:intron 25.0%
! TAGTATTCTCTAATGTGAAA+GGG - chr8_2:5530285-5530304 Msa1229670:intron 25.0%
!!! ATAATTTTTTAGGATCTGCT+TGG - chr8_2:5530408-5530427 Msa1229670:CDS 25.0%
! TGAATAGAAATTTCTCTACA+AGG + chr8_2:5530642-5530661 None:intergenic 25.0%
!! AACTTGCTCATGATATAATA+TGG - chr8_2:5530663-5530682 Msa1229670:intron 25.0%
! ATAGGAAATTGCATGTTATA+TGG - chr8_2:5530802-5530821 Msa1229670:intron 25.0%
! TAGGAAATTGCATGTTATAT+GGG - chr8_2:5530803-5530822 Msa1229670:intron 25.0%
!! AATGACTGCAGTAATATTTT+TGG + chr8_2:5531002-5531021 None:intergenic 25.0%
! TTAGGAATGAACATAAGATA+AGG - chr8_2:5531218-5531237 Msa1229670:intron 25.0%
! TAGGAATGAACATAAGATAA+GGG - chr8_2:5531219-5531238 Msa1229670:intron 25.0%
!!! TGCTTATTTTCTTATCAACT+CGG + chr8_2:5531528-5531547 None:intergenic 25.0%
! ATACTGATAATCATTTGGTA+TGG + chr8_2:5531617-5531636 None:intergenic 25.0%
! ATTCATGTACAAGTAATGTT+AGG + chr8_2:5531798-5531817 None:intergenic 25.0%
! AGTTCAGTTTAGTTAAAACA+TGG - chr8_2:5531870-5531889 Msa1229670:CDS 25.0%
! AGGTAATAGATTATTGTACA+TGG - chr8_2:5532054-5532073 Msa1229670:intron 25.0%
! GAAGAAGATCAGAAATTTAA+AGG + chr8_2:5532282-5532301 None:intergenic 25.0%
!! ATCTAAGAAAAGCAAGTTTT+GGG + chr8_2:5532319-5532338 None:intergenic 25.0%
! TAAAAAATGTTTGCCTGAAT+GGG + chr8_2:5532361-5532380 None:intergenic 25.0%
! ATAAAAAATGTTTGCCTGAA+TGG + chr8_2:5532362-5532381 None:intergenic 25.0%
!!! TTCAGGCAAACATTTTTTAT+TGG - chr8_2:5532362-5532381 Msa1229670:CDS 25.0%
! TTGAAACTGTCAATGTAATT+CGG - chr8_2:5532407-5532426 Msa1229670:CDS 25.0%
!! CTTTTATCAACAATTGCTAA+AGG + chr8_2:5532595-5532614 None:intergenic 25.0%
!! ATATGCTTCATTAGCTTAAA+GGG + chr8_2:5532700-5532719 None:intergenic 25.0%
!! AATATGCTTCATTAGCTTAA+AGG + chr8_2:5532701-5532720 None:intergenic 25.0%
!! AAACTTTAGGCTTTTCTTAT+TGG - chr8_2:5532742-5532761 Msa1229670:intron 25.0%
!!! AATTTGATTGGTGATGTAAA+AGG - chr8_2:5532789-5532808 Msa1229670:intron 25.0%
! TTGAGTCCTTATTCATAAAA+AGG - chr8_2:5533014-5533033 Msa1229670:intron 25.0%
!! TCATGACCTTTTTATGAATA+AGG + chr8_2:5533023-5533042 None:intergenic 25.0%
! GGAGATTCAAAGTATAAATA+AGG + chr8_2:5533099-5533118 None:intergenic 25.0%
! AAAAATCTTGCAACTTTACA+AGG - chr8_2:5533166-5533185 Msa1229670:intron 25.0%
! AAGAAAATTCAGAAACTCAA+TGG + chr8_2:5533203-5533222 None:intergenic 25.0%
! TTAGAGATGAAAATCATTCT+AGG - chr8_2:5533705-5533724 Msa1229670:intron 25.0%
! TTGTGGTGAAATGAAAATAA+AGG - chr8_2:5534102-5534121 Msa1229670:intron 25.0%
! TGTGGTGAAATGAAAATAAA+GGG - chr8_2:5534103-5534122 Msa1229670:intron 25.0%
! TATCTATATTCATGACATCT+AGG + chr8_2:5534281-5534300 None:intergenic 25.0%
!!! CTTAGTTGTTTTTTGATACA+AGG - chr8_2:5534350-5534369 Msa1229670:intron 25.0%
! TACTGATAAGACAGTTAATT+GGG + chr8_2:5534505-5534524 None:intergenic 25.0%
! TCATTCTACCAATAGAAAAA+AGG - chr8_2:5534617-5534636 Msa1229670:intron 25.0%
! TAATACAGTCTAGCAATAAA+TGG + chr8_2:5534743-5534762 None:intergenic 25.0%
!! TTTTATAGCAAAAACAGAAG+AGG + chr8_2:5534824-5534843 None:intergenic 25.0%
! TAGCAAAAATTATTGCTCAA+CGG + chr8_2:5534855-5534874 None:intergenic 25.0%
!!! TTTGCTAGTTTTGTTTGTAT+AGG - chr8_2:5534868-5534887 Msa1229670:intron 25.0%
! ATTGCAAGATAAATCTACTT+TGG + chr8_2:5534906-5534925 None:intergenic 25.0%
! ACAAAATTATACTCATCAAG+CGG + chr8_2:5535197-5535216 None:intergenic 25.0%
!!! AGTCTTACATGTATTGATTT+TGG - chr8_2:5535266-5535285 Msa1229670:CDS 25.0%
ATAGCTGAATGTGAATTTCT+TGG - chr8_2:5529203-5529222 Msa1229670:three_prime_UTR 30.0%
TCAACTGAATATTCAGTTAC+CGG - chr8_2:5529287-5529306 Msa1229670:three_prime_UTR 30.0%
TCTTTCCGAATACGATAATA+AGG - chr8_2:5529816-5529835 Msa1229670:CDS 30.0%
ATAAACTATTAGGCTCAGTT+TGG + chr8_2:5529943-5529962 None:intergenic 30.0%
AAACTGAGCCTAATAGTTTA+TGG - chr8_2:5529942-5529961 Msa1229670:intron 30.0%
GTGAAGAACCATAAACTATT+AGG + chr8_2:5529953-5529972 None:intergenic 30.0%
ATAGGAATTAGTTAGTTGGT+TGG - chr8_2:5530166-5530185 Msa1229670:intron 30.0%
TAGGAATTAGTTAGTTGGTT+GGG - chr8_2:5530167-5530186 Msa1229670:intron 30.0%
AGTATTCTCTAATGTGAAAG+GGG - chr8_2:5530286-5530305 Msa1229670:intron 30.0%
TGCTCATGATATAATATGGT+TGG - chr8_2:5530667-5530686 Msa1229670:intron 30.0%
ATACAATCTGTATTCAACAC+AGG + chr8_2:5531136-5531155 None:intergenic 30.0%
!! TCTTTTGTTATCAGACCAAA+TGG - chr8_2:5531423-5531442 Msa1229670:intron 30.0%
!! CTTTTGTTATCAGACCAAAT+GGG - chr8_2:5531424-5531443 Msa1229670:intron 30.0%
ACCAAATGATTATCAGTATC+AGG - chr8_2:5531618-5531637 Msa1229670:intron 30.0%
TGTAAAGATGACAATATCCA+AGG - chr8_2:5531700-5531719 Msa1229670:intron 30.0%
GCAAATTTAATTACAGAAGC+TGG - chr8_2:5531948-5531967 Msa1229670:intron 30.0%
TATTCATAGCATGTTCGTTT+GGG + chr8_2:5532136-5532155 None:intergenic 30.0%
ATATTCATAGCATGTTCGTT+TGG + chr8_2:5532137-5532156 None:intergenic 30.0%
! CATCTAAGAAAAGCAAGTTT+TGG + chr8_2:5532320-5532339 None:intergenic 30.0%
AAAAAATGTTTGCCTGAATG+GGG + chr8_2:5532360-5532379 None:intergenic 30.0%
!!! AGGCAAACATTTTTTATTGG+TGG - chr8_2:5532365-5532384 Msa1229670:CDS 30.0%
GAATTACATTGACAGTTTCA+AGG + chr8_2:5532408-5532427 None:intergenic 30.0%
! ATTGTTGATAAAAGACGTCA+TGG - chr8_2:5532601-5532620 Msa1229670:intron 30.0%
! TTGTTGATAAAAGACGTCAT+GGG - chr8_2:5532602-5532621 Msa1229670:intron 30.0%
! TACTTTTCTTAAGATCTCTC+AGG - chr8_2:5532651-5532670 Msa1229670:intron 30.0%
GTCTAGATTGAAGAAACTTT+AGG - chr8_2:5532729-5532748 Msa1229670:intron 30.0%
AGTCAGCAAAACATATAAAG+AGG + chr8_2:5532979-5532998 None:intergenic 30.0%
! GCTTTTCTTTTCTATTTCGT+AGG - chr8_2:5533063-5533082 Msa1229670:intron 30.0%
TCAAATGAAAAAGTCGCAAT+AGG - chr8_2:5533347-5533366 Msa1229670:CDS 30.0%
! AATAAGAAGGTATGTTGCAA+CGG + chr8_2:5533519-5533538 None:intergenic 30.0%
TCAACGAATGACAAATAAGA+AGG + chr8_2:5533532-5533551 None:intergenic 30.0%
TTATTTGTCATTCGTTGACA+TGG - chr8_2:5533534-5533553 Msa1229670:CDS 30.0%
CAATGCATTTATTGATCAAG+TGG - chr8_2:5533560-5533579 Msa1229670:intron 30.0%
GACTGATTAATATAAAGCCA+AGG + chr8_2:5533766-5533785 None:intergenic 30.0%
CAAACAATCAAGAATCTTAG+AGG + chr8_2:5533842-5533861 None:intergenic 30.0%
GTACGTAACAATAGTGAAAA+GGG + chr8_2:5534138-5534157 None:intergenic 30.0%
AGTACGTAACAATAGTGAAA+AGG + chr8_2:5534139-5534158 None:intergenic 30.0%
TGAAGAATGTATTGCAATGA+TGG - chr8_2:5534313-5534332 Msa1229670:intron 30.0%
ACTGATAAGACAGTTAATTG+GGG + chr8_2:5534504-5534523 None:intergenic 30.0%
CTACTGATAAGACAGTTAAT+TGG + chr8_2:5534506-5534525 None:intergenic 30.0%
!!! AGTAGTCTCCTTTTTTCTAT+TGG + chr8_2:5534628-5534647 None:intergenic 30.0%
ATAAAGTTGAGCATGTAACT+TGG - chr8_2:5534705-5534724 Msa1229670:intron 30.0%
AATTGAACCTTATTCCAGTT+TGG - chr8_2:5534957-5534976 Msa1229670:CDS 30.0%
ATTGAACCTTATTCCAGTTT+GGG - chr8_2:5534958-5534977 Msa1229670:CDS 30.0%
AAACACACTGTAGGTATATT+TGG - chr8_2:5535141-5535160 Msa1229670:intron 30.0%
! TAGGTATATTTGGAATTCAC+AGG - chr8_2:5535151-5535170 Msa1229670:intron 30.0%
! AGGTATATTTGGAATTCACA+GGG - chr8_2:5535152-5535171 Msa1229670:intron 30.0%
AAAATTATACTCATCAAGCG+GGG + chr8_2:5535195-5535214 None:intergenic 30.0%
CAAAATTATACTCATCAAGC+GGG + chr8_2:5535196-5535215 None:intergenic 30.0%
!!! TTGATTTGTGTGACTGTTTT+CGG - chr8_2:5535227-5535246 Msa1229670:CDS 30.0%
GTAAACGGTTACGCTAAATT+CGG + chr8_2:5529017-5529036 None:intergenic 35.0%
GAAAGAAGATTGAAGTAGAG+TGG + chr8_2:5529068-5529087 None:intergenic 35.0%
TGTAGTACAATCTGTCAATC+TGG - chr8_2:5529244-5529263 Msa1229670:three_prime_UTR 35.0%
CAATCTGTCAATCTGGAAAA+CGG - chr8_2:5529251-5529270 Msa1229670:three_prime_UTR 35.0%
GAATATTCAGTTGAACGGTA+CGG + chr8_2:5529281-5529300 None:intergenic 35.0%
TTCAATTCCCAGTTATCTAG+TGG - chr8_2:5529319-5529338 Msa1229670:three_prime_UTR 35.0%
AGATCATGAATACGAGTGTT+TGG + chr8_2:5529347-5529366 None:intergenic 35.0%
! AATCGTCTTCGTATTTTCTC+TGG - chr8_2:5529377-5529396 Msa1229670:exon 35.0%
ACATTCTGTACGATCAAGAT+TGG + chr8_2:5529435-5529454 None:intergenic 35.0%
TAAATATGACCTGACAAGCA+CGG - chr8_2:5529647-5529666 Msa1229670:intron 35.0%
TACCAATCTCACTGTTCATT+AGG - chr8_2:5530095-5530114 Msa1229670:intron 35.0%
ATCCTAATGAACAGTGAGAT+TGG + chr8_2:5530100-5530119 None:intergenic 35.0%
TAAATAGCCCTTCATTTCCT+AGG - chr8_2:5530229-5530248 Msa1229670:intron 35.0%
AGATACTCCTAGGAAATGAA+GGG + chr8_2:5530239-5530258 None:intergenic 35.0%
AAGATACTCCTAGGAAATGA+AGG + chr8_2:5530240-5530259 None:intergenic 35.0%
CAATGTTCAAAGATACTCCT+AGG + chr8_2:5530249-5530268 None:intergenic 35.0%
!!! ATATTGGTTTTCTCCTCCAA+GGG + chr8_2:5530315-5530334 None:intergenic 35.0%
!!! TATATTGGTTTTCTCCTCCA+AGG + chr8_2:5530316-5530335 None:intergenic 35.0%
! GTTTTTCTGAGCTTAACTAC+TGG + chr8_2:5530612-5530631 None:intergenic 35.0%
GAAATTTCTCTACAAGGACA+TGG + chr8_2:5530636-5530655 None:intergenic 35.0%
! TCTTAATTTTTCCCAGATCC+AGG + chr8_2:5530829-5530848 None:intergenic 35.0%
! AAGATAAAACGTTTTGCCGA+TGG - chr8_2:5530845-5530864 Msa1229670:intron 35.0%
! AGATAAAACGTTTTGCCGAT+GGG - chr8_2:5530846-5530865 Msa1229670:intron 35.0%
! ACTGCAGTCATTCCATATTT+TGG - chr8_2:5531010-5531029 Msa1229670:intron 35.0%
GCTCTAGCATATCCAAAATA+TGG + chr8_2:5531025-5531044 None:intergenic 35.0%
ATATGCTAGAGCTGATAGAA+AGG - chr8_2:5531033-5531052 Msa1229670:intron 35.0%
TGATAGAAAAGTCTCCCATT+TGG + chr8_2:5531441-5531460 None:intergenic 35.0%
!! TAAGCTTTTGGGAGAGTTTA+TGG + chr8_2:5531465-5531484 None:intergenic 35.0%
GCCTGATACTGATAATCATT+TGG + chr8_2:5531622-5531641 None:intergenic 35.0%
GATACAGAGATATGCCAAAA+AGG + chr8_2:5531670-5531689 None:intergenic 35.0%
CATATCTCTGTATCATACTG+TGG - chr8_2:5531676-5531695 Msa1229670:intron 35.0%
AACTACTGTTTCAGACTCAA+GGG - chr8_2:5531898-5531917 Msa1229670:intron 35.0%
ATTCCAGTTGATCATGTGTA+TGG - chr8_2:5532029-5532048 Msa1229670:intron 35.0%
CATCACAATTCTGAACAGAA+AGG - chr8_2:5532215-5532234 Msa1229670:intron 35.0%
AATTCTGAACAGAAAGGACA+AGG - chr8_2:5532221-5532240 Msa1229670:intron 35.0%
AAAAATGTTTGCCTGAATGG+GGG + chr8_2:5532359-5532378 None:intergenic 35.0%
TACATTGACAGTTTCAAGGT+AGG + chr8_2:5532404-5532423 None:intergenic 35.0%
! ATCTGAACAAATAGTCTTGC+TGG + chr8_2:5532497-5532516 None:intergenic 35.0%
!!! AGGAGCATCAGATAACTTTT+TGG + chr8_2:5532575-5532594 None:intergenic 35.0%
! TTGGATGAATCTCATTTTGC+AGG - chr8_2:5532761-5532780 Msa1229670:intron 35.0%
TTGCAGGTGATGAATTTGAT+TGG - chr8_2:5532777-5532796 Msa1229670:intron 35.0%
!! GATTGGTGATGTAAAAGGAA+AGG - chr8_2:5532794-5532813 Msa1229670:intron 35.0%
! TTCAGAAACTCAATGGATTC+AGG + chr8_2:5533196-5533215 None:intergenic 35.0%
ACAATAGTGAGATCCTAATC+AGG - chr8_2:5533262-5533281 Msa1229670:intron 35.0%
! CATTCCTTGACACAGTTTTA+AGG - chr8_2:5533432-5533451 Msa1229670:CDS 35.0%
ATCTATTGAGATAGACGCAA+TGG - chr8_2:5533456-5533475 Msa1229670:CDS 35.0%
TCTATTGAGATAGACGCAAT+GGG - chr8_2:5533457-5533476 Msa1229670:CDS 35.0%
ACCTGACAGATTAAACATGA+TGG - chr8_2:5533734-5533753 Msa1229670:intron 35.0%
ACCATCATGTTTAATCTGTC+AGG + chr8_2:5533738-5533757 None:intergenic 35.0%
! ATCTTAGAGGTATATCGAAG+CGG + chr8_2:5533829-5533848 None:intergenic 35.0%
CACTTGAATCGTGTTAATTG+TGG - chr8_2:5534085-5534104 Msa1229670:intron 35.0%
TAGATTGATCTCAAGAGTTG+TGG - chr8_2:5534170-5534189 Msa1229670:intron 35.0%
AGAGTGTGTTAAGTATGTCT+GGG - chr8_2:5534195-5534214 Msa1229670:intron 35.0%
CTGATAAGACAGTTAATTGG+GGG + chr8_2:5534503-5534522 None:intergenic 35.0%
TTATCAGTAGCAAACCTTCT+GGG - chr8_2:5534516-5534535 Msa1229670:intron 35.0%
TGTATGTAAGCATGCAAGTA+TGG + chr8_2:5534653-5534672 None:intergenic 35.0%
! TGCTCTGTTTTATCTTTGTC+AGG - chr8_2:5534930-5534949 Msa1229670:intron 35.0%
! GCTCTGTTTTATCTTTGTCA+GGG - chr8_2:5534931-5534950 Msa1229670:intron 35.0%
!! ATACCTTTTAGAGAGCTGTT+TGG - chr8_2:5535098-5535117 Msa1229670:CDS 35.0%
!! TACCTTTTAGAGAGCTGTTT+GGG - chr8_2:5535099-5535118 Msa1229670:CDS 35.0%
GTACTTGAAAAACACACTGT+AGG - chr8_2:5535132-5535151 Msa1229670:intron 35.0%
ATGGCGTAACACTCAGTAAA+CGG + chr8_2:5529032-5529051 None:intergenic 40.0%
GAGTGGACATGATGAATGAA+TGG + chr8_2:5529051-5529070 None:intergenic 40.0%
ACTGAATATTCAGTTACCGG+TGG - chr8_2:5529290-5529309 Msa1229670:three_prime_UTR 40.0%
AGCTGAGTCAGATTATAGTG+CGG - chr8_2:5529536-5529555 Msa1229670:intron 40.0%
AAATATGACCTGACAAGCAC+GGG - chr8_2:5529648-5529667 Msa1229670:intron 40.0%
TGTCAACTAGCTATGAAGCA+TGG + chr8_2:5529769-5529788 None:intergenic 40.0%
TATTAGGCTCAGTTTGGCAA+GGG + chr8_2:5529937-5529956 None:intergenic 40.0%
AATTGCATGTTATATGGGCC+TGG - chr8_2:5530808-5530827 Msa1229670:intron 40.0%
! GATAAAACGTTTTGCCGATG+GGG - chr8_2:5530847-5530866 Msa1229670:intron 40.0%
TTGGACATATATCTCCCCAT+CGG + chr8_2:5530864-5530883 None:intergenic 40.0%
TCCATAAGATTCTCATTCGC+GGG + chr8_2:5530941-5530960 None:intergenic 40.0%
CTCCATAAGATTCTCATTCG+CGG + chr8_2:5530942-5530961 None:intergenic 40.0%
TAGCTAGCGGTTATCAGTAA+TGG + chr8_2:5531381-5531400 None:intergenic 40.0%
AACGCAAATGAAGTAGCTAG+CGG + chr8_2:5531394-5531413 None:intergenic 40.0%
TCCCAAAAGCTTAACCTGTT+GGG - chr8_2:5531472-5531491 Msa1229670:intron 40.0%
! ACCCAACAGGTTAAGCTTTT+GGG + chr8_2:5531476-5531495 None:intergenic 40.0%
! AACCCAACAGGTTAAGCTTT+TGG + chr8_2:5531477-5531496 None:intergenic 40.0%
AAGCTTAACCTGTTGGGTTA+AGG - chr8_2:5531478-5531497 Msa1229670:intron 40.0%
TGGTCTAATCACTAATGCCT+TGG + chr8_2:5531720-5531739 None:intergenic 40.0%
AGATGCATGTAGAACGTGAT+TGG + chr8_2:5531740-5531759 None:intergenic 40.0%
CAACTACTGTTTCAGACTCA+AGG - chr8_2:5531897-5531916 Msa1229670:intron 40.0%
TGTCCATACACATGATCAAC+TGG + chr8_2:5532035-5532054 None:intergenic 40.0%
AGTTGATCATGTGTATGGAC+AGG - chr8_2:5532034-5532053 Msa1229670:intron 40.0%
AAACATTCTTACCCCCATTC+AGG - chr8_2:5532345-5532364 Msa1229670:CDS 40.0%
GCAAGGTAATCGAGTATAAC+AGG + chr8_2:5532475-5532494 None:intergenic 40.0%
! AACAAATAGTCTTGCTGGCA+AGG + chr8_2:5532492-5532511 None:intergenic 40.0%
AAAAGGAAAGGTAGCAGTGA+TGG - chr8_2:5532806-5532825 Msa1229670:intron 40.0%
GATGACATGATTGATACTGC+TGG - chr8_2:5532831-5532850 Msa1229670:intron 40.0%
TGTCTCTATGACCCTTAGAT+CGG - chr8_2:5532898-5532917 Msa1229670:intron 40.0%
TGTATTTCCATGTGCAATGC+AGG - chr8_2:5533318-5533337 Msa1229670:CDS 40.0%
ATAACATCCTGCATTGCACA+TGG + chr8_2:5533328-5533347 None:intergenic 40.0%
GATGCCTTAAAACTGTGTCA+AGG + chr8_2:5533439-5533458 None:intergenic 40.0%
!! GTGCATTGCACTCTAAAGTT+TGG + chr8_2:5533666-5533685 None:intergenic 40.0%
AAACATGATGGTTGCTTCCT+TGG - chr8_2:5533746-5533765 Msa1229670:intron 40.0%
AATTCTCTCTTGCTACAGCT+TGG - chr8_2:5533866-5533885 Msa1229670:intron 40.0%
! CAGCTCTTTTGCATCAAGAA+GGG - chr8_2:5533961-5533980 Msa1229670:intron 40.0%
! AGCTCTTTTGCATCAAGAAG+GGG - chr8_2:5533962-5533981 Msa1229670:intron 40.0%
! AATTTGTGGTTTGTGCTGCT+AGG - chr8_2:5534062-5534081 Msa1229670:intron 40.0%
! GAGAGTGTGTTAAGTATGTC+TGG - chr8_2:5534194-5534213 Msa1229670:intron 40.0%
ACAATCTCTCTATAGCAGGA+GGG + chr8_2:5534416-5534435 None:intergenic 40.0%
CTTGACAATCTCTCTATAGC+AGG + chr8_2:5534420-5534439 None:intergenic 40.0%
GCTATAGAGAGATTGTCAAG+CGG - chr8_2:5534420-5534439 Msa1229670:intron 40.0%
AAGTAGTTCTTCTCTGCTAG+TGG + chr8_2:5534480-5534499 None:intergenic 40.0%
CTTATCAGTAGCAAACCTTC+TGG - chr8_2:5534515-5534534 Msa1229670:intron 40.0%
! CTGTTTTATCTTTGTCAGGG+TGG - chr8_2:5534934-5534953 Msa1229670:intron 40.0%
GTTACTGCAGTATCATAAGC+TGG + chr8_2:5535023-5535042 None:intergenic 40.0%
GATACTGCAGTAACAAGAAG+TGG - chr8_2:5535029-5535048 Msa1229670:CDS 40.0%
!! ACCTTTTAGAGAGCTGTTTG+GGG - chr8_2:5535100-5535119 Msa1229670:CDS 40.0%
GAGAGAGTTACTTACGACGA+CGG + chr8_2:5529152-5529171 None:intergenic 45.0%
GGGAATTGAACTTGTACCAC+CGG + chr8_2:5529309-5529328 None:intergenic 45.0%
TTTGGCGCCACTAGATAACT+GGG + chr8_2:5529329-5529348 None:intergenic 45.0%
AGTCAGATTATAGTGCGGTG+CGG - chr8_2:5529541-5529560 Msa1229670:intron 45.0%
CTATTAGGCTCAGTTTGGCA+AGG + chr8_2:5529938-5529957 None:intergenic 45.0%
AATGTGAAAGGGGAAACCCT+TGG - chr8_2:5530296-5530315 Msa1229670:intron 45.0%
! AAGCACTTGACAGTGGGTTT+GGG + chr8_2:5530586-5530605 None:intergenic 45.0%
! TAAGCACTTGACAGTGGGTT+TGG + chr8_2:5530587-5530606 None:intergenic 45.0%
TGGTCTAAGCACTTGACAGT+GGG + chr8_2:5530592-5530611 None:intergenic 45.0%
ATGTTATATGGGCCTGGATC+TGG - chr8_2:5530814-5530833 Msa1229670:intron 45.0%
TGTTATATGGGCCTGGATCT+GGG - chr8_2:5530815-5530834 Msa1229670:intron 45.0%
ATAAGATTCTCATTCGCGGG+AGG + chr8_2:5530938-5530957 None:intergenic 45.0%
TCCCGCGAATGAGAATCTTA+TGG - chr8_2:5530937-5530956 Msa1229670:intron 45.0%
TCGTAATGATTGATGCCTGC+AGG - chr8_2:5530966-5530985 Msa1229670:intron 45.0%
CTCCCAAAAGCTTAACCTGT+TGG - chr8_2:5531471-5531490 Msa1229670:intron 45.0%
TACATGAGCCTTAACCCAAC+AGG + chr8_2:5531489-5531508 None:intergenic 45.0%
! TGGGTTGAACAGTACACAAG+TGG + chr8_2:5532117-5532136 None:intergenic 45.0%
GGTAATCGAGTATAACAGGC+TGG + chr8_2:5532471-5532490 None:intergenic 45.0%
ATAGTTGTCTCGCCAGATGT+TGG - chr8_2:5532523-5532542 Msa1229670:intron 45.0%
!! GTTTTGAGCCACCGATCTAA+GGG + chr8_2:5532912-5532931 None:intergenic 45.0%
AGCGGATCACTGATAAGACT+TGG + chr8_2:5533897-5533916 None:intergenic 45.0%
ATGCAAAAGAGCTGCTCCTT+TGG + chr8_2:5533955-5533974 None:intergenic 45.0%
! GCAGCTCTTTTGCATCAAGA+AGG - chr8_2:5533960-5533979 Msa1229670:intron 45.0%
AAGTATGTCTGGGTACGAGT+TGG - chr8_2:5534205-5534224 Msa1229670:intron 45.0%
GACAATCTCTCTATAGCAGG+AGG + chr8_2:5534417-5534436 None:intergenic 45.0%
TCGATGCCCAAACTGGAATA+AGG + chr8_2:5534967-5534986 None:intergenic 45.0%
TGTTCAATCGATGCCCAAAC+TGG + chr8_2:5534974-5534993 None:intergenic 45.0%
TAAGCTGGAACAGCAGAACA+TGG + chr8_2:5535008-5535027 None:intergenic 45.0%
ACCCCAAACAGCTCTCTAAA+AGG + chr8_2:5535104-5535123 None:intergenic 45.0%
!! TTTCAAAAAATAAAATAAAA+TGG + chr8_2:5530028-5530047 None:intergenic 5.0%
!!! AACTATAATATATTTTTTAT+TGG - chr8_2:5531080-5531099 Msa1229670:intron 5.0%
!!! AAAAAATAAATATATTTTTC+TGG + chr8_2:5531576-5531595 None:intergenic 5.0%
AGGGAGAAACGAGGAGTGAT+CGG + chr8_2:5529115-5529134 None:intergenic 50.0%
AGAGTTACTTACGACGACGG+CGG + chr8_2:5529149-5529168 None:intergenic 50.0%
AACGAACGCGAAGAGAGAGA+GGG + chr8_2:5529176-5529195 None:intergenic 50.0%
AAACGAACGCGAAGAGAGAG+AGG + chr8_2:5529177-5529196 None:intergenic 50.0%
GTTTGGCGCCACTAGATAAC+TGG + chr8_2:5529330-5529349 None:intergenic 50.0%
TATGAAGCATGGACCCTCCT+CGG + chr8_2:5529758-5529777 None:intergenic 50.0%
CTGGTCTAAGCACTTGACAG+TGG + chr8_2:5530593-5530612 None:intergenic 50.0%
!! TCCAACTGCAAGAGAGTGTC+AGG - chr8_2:5530879-5530898 Msa1229670:intron 50.0%
!! CCAACTGCAAGAGAGTGTCA+GGG - chr8_2:5530880-5530899 Msa1229670:intron 50.0%
!! CAACTGCAAGAGAGTGTCAG+GGG - chr8_2:5530881-5530900 Msa1229670:intron 50.0%
!! AACTGCAAGAGAGTGTCAGG+GGG - chr8_2:5530882-5530901 Msa1229670:intron 50.0%
! CGGTTATCAGTAATGGAGCG+TGG + chr8_2:5531374-5531393 None:intergenic 50.0%
!! TTTCTGGCTGAGACAGTCAC+TGG + chr8_2:5531560-5531579 None:intergenic 50.0%
TTGCATGTGACCTCCACTCT+GGG - chr8_2:5531985-5532004 Msa1229670:intron 50.0%
CGAGTATAACAGGCTGGTAG+TGG + chr8_2:5532465-5532484 None:intergenic 50.0%
CTAGCTACACCACCAACATC+TGG + chr8_2:5532538-5532557 None:intergenic 50.0%
TCATGGGCATAATGTTGCCG+AGG - chr8_2:5532618-5532637 Msa1229670:intron 50.0%
CTCTATGACCCTTAGATCGG+TGG - chr8_2:5532901-5532920 Msa1229670:intron 50.0%
!! CGTTTTGAGCCACCGATCTA+AGG + chr8_2:5532913-5532932 None:intergenic 50.0%
GAGATCCTAATCAGGTACGC+TGG - chr8_2:5533270-5533289 Msa1229670:intron 50.0%
CTTATAGGGACCATCGCCAA+AGG - chr8_2:5533936-5533955 Msa1229670:intron 50.0%
!! GCACAACACACGCTGTTTTC+AGG - chr8_2:5534003-5534022 Msa1229670:intron 50.0%
GTCATCGTGAACACGCCATA+TGG + chr8_2:5534547-5534566 None:intergenic 50.0%
GATGATACCTGAGCGAGTGC+GGG + chr8_2:5529413-5529432 None:intergenic 55.0%
GGATGATACCTGAGCGAGTG+CGG + chr8_2:5529414-5529433 None:intergenic 55.0%
GTGAAAGGGGAAACCCTTGG+AGG - chr8_2:5530299-5530318 Msa1229670:intron 55.0%
CCCTGACACTCTCTTGCAGT+TGG + chr8_2:5530883-5530902 None:intergenic 55.0%
TCATTCGCGGGAGGACATGT+AGG + chr8_2:5530929-5530948 None:intergenic 55.0%
TTTGGCAGAAGCTCTCCTGC+AGG + chr8_2:5530984-5531003 None:intergenic 55.0%
CTTGCATGTGACCTCCACTC+TGG - chr8_2:5531984-5532003 Msa1229670:intron 55.0%
CTCCACTCTGGGCAGTCTAT+GGG - chr8_2:5531996-5532015 Msa1229670:intron 55.0%
GTTGTCTCGCCAGATGTTGG+TGG - chr8_2:5532526-5532545 Msa1229670:intron 55.0%
CAGGTCCAGCGTACCTGATT+AGG + chr8_2:5533278-5533297 None:intergenic 55.0%
ATCTCCAGCACAGCCTTGAC+AGG + chr8_2:5533297-5533316 None:intergenic 55.0%
AAGAGCTGCTCCTTTGGCGA+TGG + chr8_2:5533949-5533968 None:intergenic 55.0%
ACCTTCTGGGCGAGACCATA+TGG - chr8_2:5534529-5534548 Msa1229670:intron 55.0%
GTTACTTACGACGACGGCGG+CGG + chr8_2:5529146-5529165 None:intergenic 60.0%
TACCTGAGCGAGTGCGGGAT+TGG + chr8_2:5529408-5529427 None:intergenic 60.0%
TGTCAGTGCCCGTGCTTGTC+AGG + chr8_2:5529659-5529678 None:intergenic 60.0%
ACACCGACACGTCTAAGCCG+AGG - chr8_2:5529738-5529757 Msa1229670:intron 60.0%
CCTCCTCGGCTTAGACGTGT+CGG + chr8_2:5529744-5529763 None:intergenic 60.0%
CGACACGTCTAAGCCGAGGA+GGG - chr8_2:5529742-5529761 Msa1229670:intron 60.0%
CCATAGACTGCCCAGAGTGG+AGG + chr8_2:5531998-5532017 None:intergenic 60.0%
CCTCCACTCTGGGCAGTCTA+TGG - chr8_2:5531995-5532014 Msa1229670:intron 60.0%
AGCCCATAGACTGCCCAGAG+TGG + chr8_2:5532001-5532020 None:intergenic 60.0%
CAGGTACGCTGGACCTGTCA+AGG - chr8_2:5533281-5533300 Msa1229670:intron 60.0%
TGGACCTGTCAAGGCTGTGC+TGG - chr8_2:5533290-5533309 Msa1229670:intron 60.0%
GCCATATGGTCTCGCCCAGA+AGG + chr8_2:5534533-5534552 None:intergenic 60.0%
GCGTTGCGGAGGGAGAAACG+AGG + chr8_2:5529124-5529143 None:intergenic 65.0%
CTGAGCGAGTGCGGGATTGG+CGG + chr8_2:5529405-5529424 None:intergenic 65.0%
CCGACACGTCTAAGCCGAGG+AGG - chr8_2:5529741-5529760 Msa1229670:intron 65.0%
CGCCAATCCCGCACTCGCTC+AGG - chr8_2:5529403-5529422 Msa1229670:intron 70.0%
! GACGGCGGCGGCGTTGCGGA+GGG + chr8_2:5529134-5529153 None:intergenic 80.0%
! CGACGACGGCGGCGGCGTTG+CGG + chr8_2:5529138-5529157 None:intergenic 80.0%
! CGACGGCGGCGGCGTTGCGG+AGG + chr8_2:5529135-5529154 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 5529012 5535358 5529012 ID=Msa1229670;Name=Msa1229670
chr8_2 mRNA 5529012 5535358 5529012 ID=Msa1229670-mRNA-1;Parent=Msa1229670;Name=Msa1229670-mRNA-1;_AED=0.21;_eAED=0.21;_QI=49|1|1|1|1|1|9|368|399
chr8_2 exon 5529012 5529418 5529012 ID=Msa1229670-mRNA-1:exon:1921;Parent=Msa1229670-mRNA-1
chr8_2 exon 5529798 5529957 5529798 ID=Msa1229670-mRNA-1:exon:1920;Parent=Msa1229670-mRNA-1
chr8_2 exon 5530346 5530427 5530346 ID=Msa1229670-mRNA-1:exon:1919;Parent=Msa1229670-mRNA-1
chr8_2 exon 5531518 5531587 5531518 ID=Msa1229670-mRNA-1:exon:1918;Parent=Msa1229670-mRNA-1
chr8_2 exon 5531731 5531898 5531731 ID=Msa1229670-mRNA-1:exon:1917;Parent=Msa1229670-mRNA-1
chr8_2 exon 5532315 5532458 5532315 ID=Msa1229670-mRNA-1:exon:1916;Parent=Msa1229670-mRNA-1
chr8_2 exon 5533316 5533564 5533316 ID=Msa1229670-mRNA-1:exon:1915;Parent=Msa1229670-mRNA-1
chr8_2 exon 5534946 5535137 5534946 ID=Msa1229670-mRNA-1:exon:1914;Parent=Msa1229670-mRNA-1
chr8_2 exon 5535214 5535358 5535214 ID=Msa1229670-mRNA-1:exon:1913;Parent=Msa1229670-mRNA-1
chr8_2 five_prime_UTR 5535310 5535358 5535310 ID=Msa1229670-mRNA-1:five_prime_utr;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5535214 5535309 5535214 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5534946 5535137 5534946 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5533316 5533564 5533316 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5532315 5532458 5532315 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5531731 5531898 5531731 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5531518 5531587 5531518 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5530346 5530427 5530346 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5529798 5529957 5529798 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 CDS 5529380 5529418 5529380 ID=Msa1229670-mRNA-1:cds;Parent=Msa1229670-mRNA-1
chr8_2 three_prime_UTR 5529012 5529379 5529012 ID=Msa1229670-mRNA-1:three_prime_utr;Parent=Msa1229670-mRNA-1
Gene Sequence

>Msa1229670

ATGTCCACTCTACTTCAATCTTCTTTCATTTCTTCTTCGTCTTCATTCTCTCCGATCACTCCTCGTTTCTCCCTCCGCAACGCCGCCGCCGTCGTCAGATGTAATAATGTAGTACAATCTGTCAATCTGGAAAACGGAAAACCGTACCGTTCAACTGAATATTCAGTTACCGGTGGTACAAGTTCAATTCCCAGTTATCTAGTGGCGCCAAACACTCGTATTCATGATCTCGTTAACAAGAATCGTCTTCGTATTTTCTCTGGCACCGCCAATCCCGCACTCGCTCAGGAAATTGCATGTTATATGGGCCTGGATCTGGGAAAAATTAAGATAAAACGTTTTGCCGATGGGGAGATATATGTCCAACTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCTACATGTCCTCCCGCGAATGAGAATCTTATGGAGCTTCTCGTAATGATTGATGCCTGCAGGAGAGCTTCTGCCAAAAATATTACTGCAGTCATTCCATATTTTGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCAATTGCTGCTAAGCTTGTAGCAAATTTAATTACAGAAGCTGGTGCAAATCGTGTTCTTGCATGTGACCTCCACTCTGGGCAGTCTATGGGCTACTTCGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATACTCGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGATAGTTGTCTCGCCAGATGTTGGTGGTGTAGCTAGAGCACGTGCTTTTGCCAAAAAGTTATCTGATGCTCCTTTAGCAATTGTTGATAAAAGACGTCATGGGCATAATGTTGCCGAGGTGATGAATTTGATTGGTGATGTAAAAGGAAAGGTAGCAGTGATGGTAGATGACATGATTGATACTGCTGGGACCATCGCCAAAGGAGCAGCTCTTTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACAACACACGCTGTTTTCAGCCCTCCTGCTATAGAGAGATTGTCAAGCGGTTTATTTCAAGAAGTTATCATAACTAATACAATTCCACTAGCAGAGAAGAACTACTTCCCCCAATTAACTGTCTTATCAGTAGCAAACCTTCTGGGCGAGACCATATGGCGTGTTCACGATGACTGCTCAGGTGGAATTGAACCTTATTCCAGTTTGGGCATCGATTGA

Protein sequence

>Msa1229670

MSTLLQSSFISSSSSFSPITPRFSLRNAAAVVRCNNVVQSVNLENGKPYRSTEYSVTGGTSSIPSYLVAPNTRIHDLVNKNRLRIFSGTANPALAQEIACYMGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLIVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVIITNTIPLAEKNYFPQLTVLSVANLLGETIWRVHDDCSGGIEPYSSLGID*