AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0512950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512950 MtrunA17_Chr3g0119811 97.674 215 5 0 1 215 1 215 3.90e-152 421
Msa0512950 MtrunA17_Chr1g0179011 44.286 140 75 2 66 202 5 144 2.26e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0512950 AT1G32990.1 76.699 206 43 3 10 215 21 221 1.58e-104 301
Msa0512950 AT5G51610.1 55.333 150 28 1 63 212 68 178 5.30e-46 150
Msa0512950 AT4G35490.2 47.101 138 70 2 68 202 13 150 3.66e-31 112
Msa0512950 AT4G35490.1 47.101 138 70 2 68 202 13 150 3.66e-31 112

Find 79 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAAGTTGTTTGGATAAAA+TGG 0.179290 3_4:-62989048 None:intergenic
AGCAGGCACAGCGGCAAATA+TGG 0.212659 3_4:+62991159 Msa0512950:CDS
TGCTTTGCCACCACCGGGTT+TGG 0.217256 3_4:-62989273 None:intergenic
TTCAAAGGGTGTTAACATTA+TGG 0.250272 3_4:+62989471 Msa0512950:CDS
GTATTTAAATTTAAATATAA+TGG 0.252953 3_4:-62991365 None:intergenic
GCTTTGCCACCACCGGGTTT+GGG 0.332344 3_4:-62989272 None:intergenic
CAAAGCAAAGGGAAGTTGTT+TGG 0.340177 3_4:-62989057 None:intergenic
TGGAGCCGGTGTCGCCTTCC+CGG 0.342001 3_4:-62989428 None:intergenic
CCACCGGTTGGACCGGCTCT+TGG 0.343636 3_4:+62989448 Msa0512950:CDS
TGAGAGGTGGGAAGGGAAAG+GGG 0.365846 3_4:-62989218 None:intergenic
GTTCTACTTCTTAAAGCTGC+TGG 0.386964 3_4:+62989701 Msa0512950:CDS
GAGAGGTGGGAAGGGAAAGG+GGG 0.391568 3_4:-62989217 None:intergenic
TACAACAATTGCTTCTGCTT+GGG 0.394575 3_4:-62991211 None:intergenic
TTGAGAGGTGGGAAGGGAAA+GGG 0.401348 3_4:-62989219 None:intergenic
TTGTTGTGTAGGGGTGGAAA+AGG 0.402114 3_4:+62991015 Msa0512950:intron
TTTCTTTGCTTTGCCACCAC+CGG 0.406080 3_4:-62989279 None:intergenic
TTGCTTTCAACTGAATTCAA+TGG 0.423121 3_4:+62989082 Msa0512950:exon
TTCAACGGGAATGATATAAC+CGG 0.425199 3_4:-62989533 None:intergenic
AGAGGTGGGAAGGGAAAGGG+GGG 0.428908 3_4:-62989216 None:intergenic
TTCTGCTTGGGTTCAAGAAT+AGG 0.432814 3_4:-62991199 None:intergenic
TTCTTTGCTTTGCCACCACC+GGG 0.435691 3_4:-62989278 None:intergenic
CACACCAAGTACCAGCTTTG+TGG 0.444391 3_4:-62991410 None:intergenic
ACCGGCTCCACCGGTTGGAC+CGG 0.445154 3_4:+62989441 Msa0512950:CDS
AATTGCTTCTGAGAAGTTGC+CGG 0.445935 3_4:+62991096 Msa0512950:CDS
GCCGGTCCAACCGGTGGAGC+CGG 0.447208 3_4:-62989442 None:intergenic
TTACAACAATTGCTTCTGCT+TGG 0.457628 3_4:-62991212 None:intergenic
ATAAAGCTGGCTCTTGAAGC+CGG 0.458425 3_4:+62989409 Msa0512950:CDS
GAACCAAGAGCCGGTCCAAC+CGG 0.467333 3_4:-62989451 None:intergenic
GTAAGTAAAGGAGTTCAATC+AGG 0.469629 3_4:+62989011 Msa0512950:five_prime_UTR
GCAGGCACAGCGGCAAATAT+GGG 0.470157 3_4:+62991160 Msa0512950:CDS
TGGACCGGCTCTTGGTTCAA+AGG 0.470221 3_4:+62989456 Msa0512950:CDS
TCAAAGACAGTGATTTCAAC+GGG 0.477736 3_4:-62989547 None:intergenic
AGTAGAAAACATAGAAGAAG+AGG 0.489977 3_4:-62989144 None:intergenic
TGTTGTGTAGGGGTGGAAAA+GGG 0.492679 3_4:+62991016 Msa0512950:intron
TCAGCCACAAAGCTGGTACT+TGG 0.497555 3_4:+62991406 Msa0512950:three_prime_UTR
GGACCGGCTCTTGGTTCAAA+GGG 0.498892 3_4:+62989457 Msa0512950:CDS
TGAAATTGAAGAGTAAGTAA+AGG 0.500444 3_4:+62988999 Msa0512950:five_prime_UTR
ATGGTCTCACAATTTAAGTC+CGG 0.511904 3_4:-62991115 None:intergenic
ATTAATATCAGCCACAAAGC+TGG 0.515910 3_4:+62991399 Msa0512950:three_prime_UTR
TTTGAGAGGTGGGAAGGGAA+AGG 0.518269 3_4:-62989220 None:intergenic
GCTCCTCCCAAACCCGGTGG+TGG 0.522421 3_4:+62989266 Msa0512950:CDS
TAAAGCTGGCTCTTGAAGCC+GGG 0.523483 3_4:+62989410 Msa0512950:CDS
GAAGGCGACACCGGCTCCAC+CGG 0.524077 3_4:+62989432 Msa0512950:CDS
ACCGGGTTTGGGAGGAGCCA+TGG 0.525469 3_4:-62989261 None:intergenic
GCCATGGCTCCTCCCAAACC+CGG 0.532943 3_4:+62989260 Msa0512950:CDS
TGAAAGCAAAGCAAAGCAAA+GGG 0.535184 3_4:-62989068 None:intergenic
TTAAGAAGTAGAACAGAAGC+AGG 0.535760 3_4:-62989692 None:intergenic
TGAAGCCGGGAAGGCGACAC+CGG 0.536862 3_4:+62989423 Msa0512950:CDS
TTGCCACCACCGGGTTTGGG+AGG 0.539113 3_4:-62989269 None:intergenic
TGCACTGTTGTATTGTGGTG+TGG 0.539862 3_4:+62991524 Msa0512950:three_prime_UTR
CGACGGAGCGCAGAAGAGAG+TGG 0.540776 3_4:-62989108 None:intergenic
AGCGTCTTTGAGAGGTGGGA+AGG 0.541953 3_4:-62989226 None:intergenic
CACAAAGCTGGTACTTGGTG+TGG 0.544208 3_4:+62991411 Msa0512950:three_prime_UTR
TCATTTGCACTGTTGTATTG+TGG 0.547732 3_4:+62991519 Msa0512950:three_prime_UTR
TTAAAGCGTCTTTGAGAGGT+GGG 0.557459 3_4:-62989230 None:intergenic
TTTAAAGCGTCTTTGAGAGG+TGG 0.557946 3_4:-62989231 None:intergenic
TGCTTGGGTTCAAGAATAGG+AGG 0.562010 3_4:-62991196 None:intergenic
GCGACACCGGCTCCACCGGT+TGG 0.574069 3_4:+62989436 Msa0512950:CDS
GCGTCTTTGAGAGGTGGGAA+GGG 0.575110 3_4:-62989225 None:intergenic
AGTGGTTGGAATCATAAAGC+TGG 0.577839 3_4:+62989396 Msa0512950:intron
TTGAAAGCAAAGCAAAGCAA+AGG 0.578717 3_4:-62989069 None:intergenic
ATCAAAGACAGTGATTTCAA+CGG 0.578769 3_4:-62989548 None:intergenic
AAAGGGTTCAAAAGACCCTA+AGG 0.579244 3_4:+62991033 Msa0512950:CDS
CCAAGAGCCGGTCCAACCGG+TGG 0.580423 3_4:-62989448 None:intergenic
TCAACGGGAATGATATAACC+GGG 0.582949 3_4:-62989532 None:intergenic
GCTGGCTCTTGAAGCCGGGA+AGG 0.585779 3_4:+62989414 Msa0512950:CDS
GGTGGTGGCAAAGCAAAGAA+AGG 0.594161 3_4:+62989281 Msa0512950:CDS
ACACCCTTTGAACCAAGAGC+CGG 0.596971 3_4:-62989460 None:intergenic
AATTCTCATAGCTGATTCGA+TGG 0.598811 3_4:-62991134 None:intergenic
ACGCTTTAAAATCACTGCCA+TGG 0.609370 3_4:+62989244 Msa0512950:CDS
TCAGCTATGAGAATTATAGC+AGG 0.610466 3_4:+62991142 Msa0512950:CDS
GAGGAAGAAGAACAAAGCGA+CGG 0.613228 3_4:-62989125 None:intergenic
AGAAGTAGAACAGAAGCAGG+TGG 0.625937 3_4:-62989689 None:intergenic
CTGTGTGATCTAGTACCACA+AGG 0.651524 3_4:-62991269 None:intergenic
GCTAGAACTGCTGATAAACC+CGG 0.652419 3_4:+62989514 Msa0512950:CDS
ATGGCTCCTCCCAAACCCGG+TGG 0.666423 3_4:+62989263 Msa0512950:CDS
AAACTATCCTTAAAACCCAG+TGG 0.696569 3_4:+62989173 Msa0512950:CDS
GAGAATTATAGCAGGCACAG+CGG 0.702772 3_4:+62991150 Msa0512950:CDS
CTTGTGGTACTAGATCACAC+AGG 0.786415 3_4:+62991270 Msa0512950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATAACATAATATCAAA+GGG - chr3_4:62989732-62989751 None:intergenic 15.0%
!! ATAACATAACATAATATCAA+AGG - chr3_4:62989733-62989752 None:intergenic 15.0%
!! TGAACTATATTAAAATTGTT+AGG + chr3_4:62990287-62990306 Msa0512950:intron 15.0%
!! ATACTGTATAAAAAAAAATC+AGG - chr3_4:62990752-62990771 None:intergenic 15.0%
!!! TATTTTGTTGTGTTATTTTC+AGG + chr3_4:62989637-62989656 Msa0512950:intron 20.0%
!! AACATAACATAATATCAAAG+GGG - chr3_4:62989731-62989750 None:intergenic 20.0%
!! ATTCTAACAAATTATATCAC+AGG - chr3_4:62989763-62989782 None:intergenic 20.0%
!! AGTTGTAATATATGAAACAT+AGG + chr3_4:62989855-62989874 Msa0512950:intron 20.0%
!!! ATTAATTTAGAGTAGAGTTA+AGG + chr3_4:62990190-62990209 Msa0512950:intron 20.0%
!! TATGTAATAGACTTTATAGT+TGG + chr3_4:62990769-62990788 Msa0512950:intron 20.0%
!! ATGTAATAGACTTTATAGTT+GGG + chr3_4:62990770-62990789 Msa0512950:intron 20.0%
! TGAAATTGAAGAGTAAGTAA+AGG + chr3_4:62988999-62989018 Msa0512950:five_prime_UTR 25.0%
! ATGAAATATAGCAATGACTA+GGG - chr3_4:62990139-62990158 None:intergenic 25.0%
! AATGAAATATAGCAATGACT+AGG - chr3_4:62990140-62990159 None:intergenic 25.0%
! CTCTAAATTAATGACATTTG+AGG - chr3_4:62990182-62990201 None:intergenic 25.0%
! AGGATCATTGAAACTTAAAT+AGG + chr3_4:62990210-62990229 Msa0512950:intron 25.0%
! GGATCATTGAAACTTAAATA+GGG + chr3_4:62990211-62990230 Msa0512950:intron 25.0%
! ATTGAAACTTAAATAGGGTA+AGG + chr3_4:62990216-62990235 Msa0512950:intron 25.0%
! CTAAATATCCAATATCAGTA+TGG - chr3_4:62990316-62990335 None:intergenic 25.0%
! AAATTGAATCACAGAGTAAA+CGG - chr3_4:62990388-62990407 None:intergenic 25.0%
!!! ATGATCTATTTGTTTTAAGC+TGG + chr3_4:62990415-62990434 Msa0512950:intron 25.0%
!! CACAGTATTTTACATATCAT+TGG - chr3_4:62990538-62990557 None:intergenic 25.0%
! ATTAAAACACCTAGTAAACA+GGG - chr3_4:62990666-62990685 None:intergenic 25.0%
! AAAAAAAATCAGGTACAGAA+AGG - chr3_4:62990742-62990761 None:intergenic 25.0%
! AAGATAGTAGCAGAAAATAT+TGG + chr3_4:62990800-62990819 Msa0512950:intron 25.0%
! AGATAGTAGCAGAAAATATT+GGG + chr3_4:62990801-62990820 Msa0512950:intron 25.0%
!!! TATTGGTTTGATAGATTATC+AGG + chr3_4:62990915-62990934 Msa0512950:intron 25.0%
TTGCTTTCAACTGAATTCAA+TGG + chr3_4:62989082-62989101 Msa0512950:exon 30.0%
AGTAGAAAACATAGAAGAAG+AGG - chr3_4:62989147-62989166 None:intergenic 30.0%
!!! GGTTTTAAGGATAGTTTAAG+AGG - chr3_4:62989170-62989189 None:intergenic 30.0%
!! TTCAAAGGGTGTTAACATTA+TGG + chr3_4:62989471-62989490 Msa0512950:CDS 30.0%
ATCAAAGACAGTGATTTCAA+CGG - chr3_4:62989551-62989570 None:intergenic 30.0%
ATTTACTAGAGATGCATTAG+TGG - chr3_4:62989815-62989834 None:intergenic 30.0%
CTAGTAAATAAGCCTGTTAT+TGG + chr3_4:62989826-62989845 Msa0512950:intron 30.0%
AAGTGATTGTATGTAATGAC+TGG + chr3_4:62989943-62989962 Msa0512950:intron 30.0%
GCTAACTATAAGACACTATT+GGG + chr3_4:62990034-62990053 Msa0512950:intron 30.0%
CTAATGACTAATAACTTTCG+TGG - chr3_4:62990090-62990109 None:intergenic 30.0%
GAAAGTTATTAGTCATTAGC+TGG + chr3_4:62990091-62990110 Msa0512950:intron 30.0%
ATTAGTCATTAGCTGGAATT+TGG + chr3_4:62990098-62990117 Msa0512950:intron 30.0%
! AAATTAATGACATTTGAGGC+AGG - chr3_4:62990178-62990197 None:intergenic 30.0%
ATATAGTTCACTTAGTTGCA+AGG - chr3_4:62990277-62990296 None:intergenic 30.0%
! TTTTAAGCTGGATCTAATCA+AGG + chr3_4:62990427-62990446 Msa0512950:intron 30.0%
TTTAAGCTGGATCTAATCAA+GGG + chr3_4:62990428-62990447 Msa0512950:intron 30.0%
!!! AGGGAATGAGATTTTTTTAG+TGG + chr3_4:62990590-62990609 Msa0512950:intron 30.0%
!!! TTTTTTAGTGGTTACATTCG+AGG + chr3_4:62990602-62990621 Msa0512950:intron 30.0%
TTAAAACACCTAGTAAACAG+GGG - chr3_4:62990665-62990684 None:intergenic 30.0%
CATTAAAACACCTAGTAAAC+AGG - chr3_4:62990667-62990686 None:intergenic 30.0%
!! CTGTTTACTAGGTGTTTTAA+TGG + chr3_4:62990665-62990684 Msa0512950:intron 30.0%
!!! TTACTAGGTGTTTTAATGGA+TGG + chr3_4:62990669-62990688 Msa0512950:intron 30.0%
!!! AGGTAAGTTTTGTTCAAGAT+GGG - chr3_4:62990722-62990741 None:intergenic 30.0%
!!! AAGGTAAGTTTTGTTCAAGA+TGG - chr3_4:62990723-62990742 None:intergenic 30.0%
AAAACGAAGCAGATATGTTA+AGG + chr3_4:62990891-62990910 Msa0512950:intron 30.0%
AGCAGATATGTTAAGGTTAT+TGG + chr3_4:62990898-62990917 Msa0512950:intron 30.0%
TCCAAACTCTATTATACTGA+TGG + chr3_4:62990986-62991005 Msa0512950:intron 30.0%
TCCATCAGTATAATAGAGTT+TGG - chr3_4:62990990-62991009 None:intergenic 30.0%
GTAAGTAAAGGAGTTCAATC+AGG + chr3_4:62989011-62989030 Msa0512950:five_prime_UTR 35.0%
GGGAAGTTGTTTGGATAAAA+TGG - chr3_4:62989051-62989070 None:intergenic 35.0%
TGAAAGCAAAGCAAAGCAAA+GGG - chr3_4:62989071-62989090 None:intergenic 35.0%
TTGAAAGCAAAGCAAAGCAA+AGG - chr3_4:62989072-62989091 None:intergenic 35.0%
AAACTATCCTTAAAACCCAG+TGG + chr3_4:62989173-62989192 Msa0512950:CDS 35.0%
!!! GATTTTAAAGCGTCTTTGAG+AGG - chr3_4:62989237-62989256 None:intergenic 35.0%
TTAGAACATGTTTGTGTCTG+TGG + chr3_4:62989368-62989387 Msa0512950:intron 35.0%
TTCAACGGGAATGATATAAC+CGG - chr3_4:62989536-62989555 None:intergenic 35.0%
TCAAAGACAGTGATTTCAAC+GGG - chr3_4:62989550-62989569 None:intergenic 35.0%
TTAAGAAGTAGAACAGAAGC+AGG - chr3_4:62989695-62989714 None:intergenic 35.0%
ACAACTTGTAGACCAATAAC+AGG - chr3_4:62989841-62989860 None:intergenic 35.0%
TACCATAGTCTATATAGTGC+CGG - chr3_4:62989906-62989925 None:intergenic 35.0%
ATACCTTCAGTATAAAGTGC+CGG + chr3_4:62989994-62990013 Msa0512950:intron 35.0%
GGCTAACTATAAGACACTAT+TGG + chr3_4:62990033-62990052 Msa0512950:intron 35.0%
ACTATAAGACACTATTGGGT+CGG + chr3_4:62990038-62990057 Msa0512950:intron 35.0%
TTAGGCATCCATACTGATAT+TGG + chr3_4:62990305-62990324 Msa0512950:intron 35.0%
AGAATTTCTCCTACACTACA+AGG + chr3_4:62990570-62990589 Msa0512950:intron 35.0%
GAATTTCTCCTACACTACAA+GGG + chr3_4:62990571-62990590 Msa0512950:intron 35.0%
! ACATTCGAGGTATTCTTACA+AGG + chr3_4:62990615-62990634 Msa0512950:intron 35.0%
! TCAAGATGGGGAGATTTTAA+TGG - chr3_4:62990709-62990728 None:intergenic 35.0%
!!! GGTAAGTTTTGTTCAAGATG+GGG - chr3_4:62990721-62990740 None:intergenic 35.0%
GTCTTGAAATATGATCAGTC+TGG + chr3_4:62990843-62990862 Msa0512950:intron 35.0%
!! ATGGACTGATTTGTTGTGTA+GGG + chr3_4:62991005-62991024 Msa0512950:intron 35.0%
!!! TTCCTACTTTTTGTGCCTTA+GGG - chr3_4:62991051-62991070 None:intergenic 35.0%
!!! TTTCCTACTTTTTGTGCCTT+AGG - chr3_4:62991052-62991071 None:intergenic 35.0%
ATGGTCTCACAATTTAAGTC+CGG - chr3_4:62991118-62991137 None:intergenic 35.0%
!! AATTCTCATAGCTGATTCGA+TGG - chr3_4:62991137-62991156 None:intergenic 35.0%
TCAGCTATGAGAATTATAGC+AGG + chr3_4:62991142-62991161 Msa0512950:CDS 35.0%
TACAACAATTGCTTCTGCTT+GGG - chr3_4:62991214-62991233 None:intergenic 35.0%
TTACAACAATTGCTTCTGCT+TGG - chr3_4:62991215-62991234 None:intergenic 35.0%
! AAGGACTTTTTACACTTGGA+GGG - chr3_4:62991253-62991272 None:intergenic 35.0%
ATTAATATCAGCCACAAAGC+TGG + chr3_4:62991399-62991418 Msa0512950:three_prime_UTR 35.0%
TCATTTGCACTGTTGTATTG+TGG + chr3_4:62991519-62991538 Msa0512950:three_prime_UTR 35.0%
CAAAGCAAAGGGAAGTTGTT+TGG - chr3_4:62989060-62989079 None:intergenic 40.0%
!!! AAGGGGGGTTTTGTTTTGAA+GGG - chr3_4:62989204-62989223 None:intergenic 40.0%
!!! AAAGGGGGGTTTTGTTTTGA+AGG - chr3_4:62989205-62989224 None:intergenic 40.0%
! TTAAAGCGTCTTTGAGAGGT+GGG - chr3_4:62989233-62989252 None:intergenic 40.0%
! TTTAAAGCGTCTTTGAGAGG+TGG - chr3_4:62989234-62989253 None:intergenic 40.0%
!! ACGCTTTAAAATCACTGCCA+TGG + chr3_4:62989244-62989263 Msa0512950:CDS 40.0%
AGTGGTTGGAATCATAAAGC+TGG + chr3_4:62989396-62989415 Msa0512950:intron 40.0%
TCAACGGGAATGATATAACC+GGG - chr3_4:62989535-62989554 None:intergenic 40.0%
GTTCTACTTCTTAAAGCTGC+TGG + chr3_4:62989701-62989720 Msa0512950:CDS 40.0%
AGACACGTGTTCCAATACTT+GGG + chr3_4:62989970-62989989 Msa0512950:intron 40.0%
! TAATGACATTTGAGGCAGGA+AGG - chr3_4:62990174-62990193 None:intergenic 40.0%
ATCTCATTCCCTTGTAGTGT+AGG - chr3_4:62990582-62990601 None:intergenic 40.0%
AAGGCTACATCCACTACTTA+TGG + chr3_4:62990634-62990653 Msa0512950:intron 40.0%
AGATTCACTCGTAAACAGGA+TGG - chr3_4:62990954-62990973 None:intergenic 40.0%
CACTAGATTCACTCGTAAAC+AGG - chr3_4:62990958-62990977 None:intergenic 40.0%
!! GATGGACTGATTTGTTGTGT+AGG + chr3_4:62991004-62991023 Msa0512950:intron 40.0%
!! TGGACTGATTTGTTGTGTAG+GGG + chr3_4:62991006-62991025 Msa0512950:intron 40.0%
AAAGGGTTCAAAAGACCCTA+AGG + chr3_4:62991033-62991052 Msa0512950:CDS 40.0%
! AATTGCTTCTGAGAAGTTGC+CGG + chr3_4:62991096-62991115 Msa0512950:CDS 40.0%
TTCTGCTTGGGTTCAAGAAT+AGG - chr3_4:62991202-62991221 None:intergenic 40.0%
! CAAGGACTTTTTACACTTGG+AGG - chr3_4:62991254-62991273 None:intergenic 40.0%
! CCACAAGGACTTTTTACACT+TGG - chr3_4:62991257-62991276 None:intergenic 40.0%
CCAAGTGTAAAAAGTCCTTG+TGG + chr3_4:62991254-62991273 Msa0512950:three_prime_UTR 40.0%
GAGGAAGAAGAACAAAGCGA+CGG - chr3_4:62989128-62989147 None:intergenic 45.0%
TTTCTTTGCTTTGCCACCAC+CGG - chr3_4:62989282-62989301 None:intergenic 45.0%
TTTGTGTCTGTGGCAAACAG+TGG + chr3_4:62989378-62989397 Msa0512950:intron 45.0%
! ATAAAGCTGGCTCTTGAAGC+CGG + chr3_4:62989409-62989428 Msa0512950:CDS 45.0%
GCTAGAACTGCTGATAAACC+CGG + chr3_4:62989514-62989533 Msa0512950:CDS 45.0%
AGAAGTAGAACAGAAGCAGG+TGG - chr3_4:62989692-62989711 None:intergenic 45.0%
CACCGGCACTATATAGACTA+TGG + chr3_4:62989901-62989920 Msa0512950:intron 45.0%
CAGACACGTGTTCCAATACT+TGG + chr3_4:62989969-62989988 Msa0512950:intron 45.0%
! CTGAAGGTATGCCCAAGTAT+TGG - chr3_4:62989984-62990003 None:intergenic 45.0%
GCCTTACAACTATGTAGCAC+CGG - chr3_4:62990016-62990035 None:intergenic 45.0%
GCTGGATCTAATCAAGGGTT+AGG + chr3_4:62990433-62990452 Msa0512950:intron 45.0%
!! ACTGATTTGTTGTGTAGGGG+TGG + chr3_4:62991009-62991028 Msa0512950:intron 45.0%
TTGTTGTGTAGGGGTGGAAA+AGG + chr3_4:62991015-62991034 Msa0512950:intron 45.0%
TGTTGTGTAGGGGTGGAAAA+GGG + chr3_4:62991016-62991035 Msa0512950:intron 45.0%
GACCCTAAGGCACAAAAAGT+AGG + chr3_4:62991046-62991065 Msa0512950:CDS 45.0%
GAGAATTATAGCAGGCACAG+CGG + chr3_4:62991150-62991169 Msa0512950:CDS 45.0%
TGCTTGGGTTCAAGAATAGG+AGG - chr3_4:62991199-62991218 None:intergenic 45.0%
CTGTGTGATCTAGTACCACA+AGG - chr3_4:62991272-62991291 None:intergenic 45.0%
CTTGTGGTACTAGATCACAC+AGG + chr3_4:62991270-62991289 Msa0512950:three_prime_UTR 45.0%
TGCACTGTTGTATTGTGGTG+TGG + chr3_4:62991524-62991543 Msa0512950:three_prime_UTR 45.0%
!! GTATTTAAATTTAAATATAA+TGG - chr3_4:62991368-62991387 None:intergenic 5.0%
!! TTTTGAAGGGAGACGCCACT+GGG - chr3_4:62989191-62989210 None:intergenic 50.0%
TTGAGAGGTGGGAAGGGAAA+GGG - chr3_4:62989222-62989241 None:intergenic 50.0%
TTTGAGAGGTGGGAAGGGAA+AGG - chr3_4:62989223-62989242 None:intergenic 50.0%
TTCTTTGCTTTGCCACCACC+GGG - chr3_4:62989281-62989300 None:intergenic 50.0%
! GGTGGTGGCAAAGCAAAGAA+AGG + chr3_4:62989281-62989300 Msa0512950:CDS 50.0%
TGTCTGTGGCAAACAGTGGT+TGG + chr3_4:62989382-62989401 Msa0512950:intron 50.0%
! TAAAGCTGGCTCTTGAAGCC+GGG + chr3_4:62989410-62989429 Msa0512950:CDS 50.0%
ACACCCTTTGAACCAAGAGC+CGG - chr3_4:62989463-62989482 None:intergenic 50.0%
CATAGGCACCACACTAGATG+CGG + chr3_4:62989872-62989891 Msa0512950:intron 50.0%
! GCACCGGCACTTTATACTGA+AGG - chr3_4:62990000-62990019 None:intergenic 50.0%
!! GCCGGTGCTACATAGTTGTA+AGG + chr3_4:62990012-62990031 Msa0512950:intron 50.0%
CACTATTGGGTCGGCATGTT+TGG + chr3_4:62990047-62990066 Msa0512950:intron 50.0%
! TGACATTTGAGGCAGGAAGG+AGG - chr3_4:62990171-62990190 None:intergenic 50.0%
AGGGGTTCAGCCATAAGTAG+TGG - chr3_4:62990647-62990666 None:intergenic 50.0%
TGGCTGAACCCCTGTTTACT+AGG + chr3_4:62990654-62990673 Msa0512950:intron 50.0%
TCAGCCACAAAGCTGGTACT+TGG + chr3_4:62991406-62991425 Msa0512950:three_prime_UTR 50.0%
CACACCAAGTACCAGCTTTG+TGG - chr3_4:62991413-62991432 None:intergenic 50.0%
! CACAAAGCTGGTACTTGGTG+TGG + chr3_4:62991411-62991430 Msa0512950:three_prime_UTR 50.0%
! GGAGACGCCACTGGGTTTTA+AGG - chr3_4:62989183-62989202 None:intergenic 55.0%
!!! GTTTTGAAGGGAGACGCCAC+TGG - chr3_4:62989192-62989211 None:intergenic 55.0%
TGAGAGGTGGGAAGGGAAAG+GGG - chr3_4:62989221-62989240 None:intergenic 55.0%
! GCGTCTTTGAGAGGTGGGAA+GGG - chr3_4:62989228-62989247 None:intergenic 55.0%
! AGCGTCTTTGAGAGGTGGGA+AGG - chr3_4:62989229-62989248 None:intergenic 55.0%
! TGGACCGGCTCTTGGTTCAA+AGG + chr3_4:62989456-62989475 Msa0512950:CDS 55.0%
! GGACCGGCTCTTGGTTCAAA+GGG + chr3_4:62989457-62989476 Msa0512950:CDS 55.0%
TGTCGTGTCCGCATCTAGTG+TGG - chr3_4:62989883-62989902 None:intergenic 55.0%
ACTAGATGCGGACACGACAC+CGG + chr3_4:62989884-62989903 Msa0512950:intron 55.0%
AGCAGGCACAGCGGCAAATA+TGG + chr3_4:62991159-62991178 Msa0512950:CDS 55.0%
GCAGGCACAGCGGCAAATAT+GGG + chr3_4:62991160-62991179 Msa0512950:CDS 55.0%
AGAGGTGGGAAGGGAAAGGG+GGG - chr3_4:62989219-62989238 None:intergenic 60.0%
GAGAGGTGGGAAGGGAAAGG+GGG - chr3_4:62989220-62989239 None:intergenic 60.0%
GCTTTGCCACCACCGGGTTT+GGG - chr3_4:62989275-62989294 None:intergenic 60.0%
TGCTTTGCCACCACCGGGTT+TGG - chr3_4:62989276-62989295 None:intergenic 60.0%
GAACCAAGAGCCGGTCCAAC+CGG - chr3_4:62989454-62989473 None:intergenic 60.0%
GGGTCGGCATGTTTGGCTAG+CGG + chr3_4:62990054-62990073 Msa0512950:intron 60.0%
CGACGGAGCGCAGAAGAGAG+TGG - chr3_4:62989111-62989130 None:intergenic 65.0%
GCCATGGCTCCTCCCAAACC+CGG + chr3_4:62989260-62989279 Msa0512950:CDS 65.0%
ACCGGGTTTGGGAGGAGCCA+TGG - chr3_4:62989264-62989283 None:intergenic 65.0%
ATGGCTCCTCCCAAACCCGG+TGG + chr3_4:62989263-62989282 Msa0512950:CDS 65.0%
TTGCCACCACCGGGTTTGGG+AGG - chr3_4:62989272-62989291 None:intergenic 65.0%
! GCTGGCTCTTGAAGCCGGGA+AGG + chr3_4:62989414-62989433 Msa0512950:CDS 65.0%
TGAAGCCGGGAAGGCGACAC+CGG + chr3_4:62989423-62989442 Msa0512950:CDS 65.0%
GCTCCTCCCAAACCCGGTGG+TGG + chr3_4:62989266-62989285 Msa0512950:CDS 70.0%
!! TGGAGCCGGTGTCGCCTTCC+CGG - chr3_4:62989431-62989450 None:intergenic 70.0%
!! GAAGGCGACACCGGCTCCAC+CGG + chr3_4:62989432-62989451 Msa0512950:CDS 70.0%
! ACCGGCTCCACCGGTTGGAC+CGG + chr3_4:62989441-62989460 Msa0512950:CDS 70.0%
CCAAGAGCCGGTCCAACCGG+TGG - chr3_4:62989451-62989470 None:intergenic 70.0%
! CCACCGGTTGGACCGGCTCT+TGG + chr3_4:62989448-62989467 Msa0512950:CDS 70.0%
!! GCGACACCGGCTCCACCGGT+TGG + chr3_4:62989436-62989455 Msa0512950:CDS 75.0%
GCCGGTCCAACCGGTGGAGC+CGG - chr3_4:62989445-62989464 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 62988979 62991588 62988979 ID=Msa0512950;Name=Msa0512950
chr3_4 mRNA 62988979 62991588 62988979 ID=Msa0512950-mRNA-1;Parent=Msa0512950;Name=Msa0512950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=122|1|1|1|1|1|4|354|215
chr3_4 exon 62988979 62989302 62988979 ID=Msa0512950-mRNA-1:exon:15691;Parent=Msa0512950-mRNA-1
chr3_4 exon 62989398 62989570 62989398 ID=Msa0512950-mRNA-1:exon:15692;Parent=Msa0512950-mRNA-1
chr3_4 exon 62989659 62989722 62989659 ID=Msa0512950-mRNA-1:exon:15693;Parent=Msa0512950-mRNA-1
chr3_4 exon 62991026 62991588 62991026 ID=Msa0512950-mRNA-1:exon:15694;Parent=Msa0512950-mRNA-1
chr3_4 five_prime_UTR 62988979 62989100 62988979 ID=Msa0512950-mRNA-1:five_prime_utr;Parent=Msa0512950-mRNA-1
chr3_4 CDS 62989101 62989302 62989101 ID=Msa0512950-mRNA-1:cds;Parent=Msa0512950-mRNA-1
chr3_4 CDS 62989398 62989570 62989398 ID=Msa0512950-mRNA-1:cds;Parent=Msa0512950-mRNA-1
chr3_4 CDS 62989659 62989722 62989659 ID=Msa0512950-mRNA-1:cds;Parent=Msa0512950-mRNA-1
chr3_4 CDS 62991026 62991234 62991026 ID=Msa0512950-mRNA-1:cds;Parent=Msa0512950-mRNA-1
chr3_4 three_prime_UTR 62991235 62991588 62991235 ID=Msa0512950-mRNA-1:three_prime_utr;Parent=Msa0512950-mRNA-1
Gene Sequence

>Msa0512950

ATGGCGTCCACTCTCTTCTGCGCTCCGTCGCTTTGTTCTTCTTCCTCTTCTTCTATGTTTTCTACTCCTCTTAAACTATCCTTAAAACCCAGTGGCGTCTCCCTTCAAAACAAAACCCCCCTTTCCCTTCCCACCTCTCAAAGACGCTTTAAAATCACTGCCATGGCTCCTCCCAAACCCGGTGGTGGCAAAGCAAAGAAAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAGGGTGTTAACATTATGGCTTTCTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGGGTGGAAAAGGGTTCAAAAGACCCTAAGGCACAAAAAGTAGGAAAAGTCACAGTTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTAAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

Protein sequence

>Msa0512950

MASTLFCAPSLCSSSSSSMFSTPLKLSLKPSGVSLQNKTPLSLPTSQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTVDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL*