AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249650 MtrunA17_Chr2g0286021 100.000 27 0 0 1 27 1 27 6.22e-13 63.2
Msa0249650 MtrunA17_Chr7g0218571 72.973 37 10 0 65 101 75 111 3.17e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 119 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCATAAGTTTAGGCTTT+AGG 0.170885 2_2:-36876886 Msa0249650:three_prime_UTR
TCTTTCCAGCCAACAAATTT+AGG 0.187535 2_2:-36874966 Msa0249650:intron
AACCATAAGTTTAGGCTTTA+GGG 0.213110 2_2:-36876885 Msa0249650:three_prime_UTR
GACTTGTTTGGTGTAAATTA+AGG 0.241182 2_2:-36876546 Msa0249650:three_prime_UTR
TTCAAATAAGTTAATCTAAA+AGG 0.250881 2_2:-36876681 Msa0249650:three_prime_UTR
GCTTTAGTTCAAATTGCTTT+TGG 0.254423 2_2:-36878160 Msa0249650:intron
AAGCTATATTGTAGGGTCTA+TGG 0.267196 2_2:-36876795 Msa0249650:three_prime_UTR
GGAGAAAATTGAGTACCTTT+TGG 0.281512 2_2:-36876525 Msa0249650:three_prime_UTR
GGAGTACTCCTTCAGGCTTA+TGG 0.286052 2_2:-36876449 Msa0249650:three_prime_UTR
ACTGCTATTATTATCATGTT+TGG 0.291212 2_2:-36877819 Msa0249650:three_prime_UTR
ATCCCTAAAGCCTAAACTTA+TGG 0.300096 2_2:+36876883 None:intergenic
GGAAGAAGGTTGGAGAGTTT+TGG 0.300993 2_2:-36877528 Msa0249650:three_prime_UTR
TCGCCCTCGTTCTTTCTTCA+AGG 0.310085 2_2:-36879328 Msa0249650:CDS
CTTGCTGATCCTAAATTTGT+TGG 0.321349 2_2:+36874957 None:intergenic
AGCTATCGTCTTGAGGATTA+TGG 0.321477 2_2:-36874907 Msa0249650:three_prime_UTR
CTGCATGTATTGCAGCTCTA+TGG 0.327181 2_2:+36875220 None:intergenic
TACGCCACTATCTAAATTGC+AGG 0.347216 2_2:-36877911 Msa0249650:three_prime_UTR
CAGTTAGGACCGAGGCTTCT+TGG 0.352101 2_2:-36878387 Msa0249650:CDS
AGCGGCTGGTGTGTCGGTTT+TGG 0.352405 2_2:-36878523 Msa0249650:CDS
TTCTATTGCATGGCTAAGTA+TGG 0.352654 2_2:-36877461 Msa0249650:three_prime_UTR
ACCACGAAGTCCGATCCTTC+AGG 0.362970 2_2:+36875300 None:intergenic
AACATACACATAAAATTTGC+AGG 0.374225 2_2:+36877584 None:intergenic
TTCCAAAACCAAAACACTAT+TGG 0.388360 2_2:+36874825 None:intergenic
ACGCACCCACTAACTTTCAT+TGG 0.393917 2_2:+36877943 None:intergenic
AAAGCCATGTTTATGCAGTT+AGG 0.403852 2_2:-36878402 Msa0249650:CDS
CCTCGTTCTTTCTTCAAGGT+TGG 0.406404 2_2:-36879324 Msa0249650:intron
TTACGAGAACTTATAGAAAC+AGG 0.407103 2_2:+36876737 None:intergenic
CAGCATTGGAGTACTCCTTC+AGG 0.411265 2_2:-36876456 Msa0249650:three_prime_UTR
AGTGGAGTTGTTAGTGGACT+TGG 0.412473 2_2:-36876497 Msa0249650:three_prime_UTR
GAAGTCCACAGTTGCCGATC+AGG 0.414976 2_2:-36877246 Msa0249650:three_prime_UTR
TAGGACCGAGGCTTCTTGGC+AGG 0.415660 2_2:-36878383 Msa0249650:CDS
GAGACAAGTGGAGTTGTTAG+TGG 0.419382 2_2:-36876503 Msa0249650:three_prime_UTR
ATGGTTCCACCATTTGTGTT+GGG 0.424035 2_2:+36875239 None:intergenic
TTGGCAGGGTTGACGATTCA+AGG 0.427680 2_2:-36878368 Msa0249650:CDS
GCAGCTGAAGAGGACTTGTT+TGG 0.442244 2_2:-36876558 Msa0249650:three_prime_UTR
CACTCTCCAAGCTATATTGT+AGG 0.446308 2_2:-36876803 Msa0249650:three_prime_UTR
TGCTGTTCTGTTATGACAGC+AGG 0.447721 2_2:+36878575 None:intergenic
TATGGTTCCACCATTTGTGT+TGG 0.455098 2_2:+36875238 None:intergenic
GGAGTTACTGCTAGCAGCAT+TGG 0.459197 2_2:-36876470 Msa0249650:three_prime_UTR
TGATATGCTGTAGCAGTTGT+TGG 0.463306 2_2:-36876912 Msa0249650:three_prime_UTR
GAAAGAACGAGGGCGAAACT+TGG 0.463754 2_2:+36879335 None:intergenic
ATTCATAATGAAGTGAATAC+CGG 0.464662 2_2:-36878229 Msa0249650:CDS
TCTGTAGGCTGTGCAGCGGC+TGG 0.469312 2_2:-36878537 Msa0249650:CDS
GGCTGAGCTCTATAAATAAG+AGG 0.470532 2_2:+36877964 None:intergenic
TAGTATCTTTGCACCGGTAG+TGG 0.471506 2_2:-36878184 Msa0249650:three_prime_UTR
CAGTGGCTTCACTCATGCTC+AGG 0.473741 2_2:-36876359 Msa0249650:intron
CAACTCCACTTGTCTCCAAA+AGG 0.476312 2_2:+36876510 None:intergenic
GACGATAGCTAGAGACTCAT+AGG 0.476917 2_2:+36874920 None:intergenic
GCTGTTGGTGCTGTTTCTGT+AGG 0.479485 2_2:-36878552 Msa0249650:CDS
AGCTATATTGTAGGGTCTAT+GGG 0.490394 2_2:-36876794 Msa0249650:three_prime_UTR
TCCTGAAGGATCGGACTTCG+TGG 0.492081 2_2:-36875301 Msa0249650:three_prime_UTR
AAAGTGATAAATGAATAAGA+TGG 0.492984 2_2:-36877112 Msa0249650:three_prime_UTR
ATAACCTGCAATTTAGATAG+TGG 0.495770 2_2:+36877907 None:intergenic
TTGGTTACAACCATAAGTTT+AGG 0.503324 2_2:-36876893 Msa0249650:three_prime_UTR
ATTGTCCTTCCCAACACAAA+TGG 0.508396 2_2:-36875248 Msa0249650:three_prime_UTR
TCCATGCGGAAATGGGAAGA+AGG 0.514677 2_2:-36877542 Msa0249650:three_prime_UTR
GCATTAGAATCTGACACTGC+AGG 0.515006 2_2:+36877354 None:intergenic
GCTCAGCCAATGAAAGTTAG+TGG 0.517412 2_2:-36877949 Msa0249650:three_prime_UTR
AAACTTTCGCGAAAGGCACT+CGG 0.518788 2_2:+36877296 None:intergenic
GAGAACTCAAATGAAAGATA+AGG 0.519927 2_2:+36877865 None:intergenic
AAGTGATAAATGAATAAGAT+GGG 0.522280 2_2:-36877111 Msa0249650:three_prime_UTR
TGCGGAAATGGGAAGAAGGT+TGG 0.524281 2_2:-36877538 Msa0249650:three_prime_UTR
GTTGTTAGTGGACTTGGGAA+AGG 0.528717 2_2:-36876491 Msa0249650:three_prime_UTR
TGCGTTTCGATCTTGTTCCC+CGG 0.532113 2_2:+36878210 None:intergenic
AAGACTATATTGTCAAAAGA+AGG 0.532861 2_2:+36877708 None:intergenic
AGGACCGAGGCTTCTTGGCA+GGG 0.533687 2_2:-36878382 Msa0249650:CDS
CTGTGCAGCGGCTGGTGTGT+CGG 0.534067 2_2:-36878529 Msa0249650:CDS
ATAGACCCTACAATATAGCT+TGG 0.534574 2_2:+36876797 None:intergenic
TTCCACCATTTGTGTTGGGA+AGG 0.538380 2_2:+36875243 None:intergenic
TTCGTGGTATCGTGATAGCC+AGG 0.540887 2_2:-36875285 Msa0249650:three_prime_UTR
ATAAACTAACTTCTATTGCA+TGG 0.542096 2_2:-36877471 Msa0249650:three_prime_UTR
TCTGGAGTAGGGCAGAGACT+TGG 0.544052 2_2:+36879380 None:intergenic
ACAACTGCTACAGCATATCA+TGG 0.544123 2_2:+36876915 None:intergenic
TTCATAATGAAGTGAATACC+GGG 0.553640 2_2:-36878228 Msa0249650:CDS
ATGAACCTGATCGGCAACTG+TGG 0.556047 2_2:+36877241 None:intergenic
TAATGACTATAAATGCACTC+TGG 0.559994 2_2:-36877641 Msa0249650:three_prime_UTR
CAATTTAGATAGTGGCGTAA+AGG 0.562740 2_2:+36877915 None:intergenic
GAGAGTTAAACTTTCGCGAA+AGG 0.563012 2_2:+36877289 None:intergenic
ACTCTCCAAGCTATATTGTA+GGG 0.569220 2_2:-36876802 Msa0249650:three_prime_UTR
TGGCAGGGTTGACGATTCAA+GGG 0.571112 2_2:-36878367 Msa0249650:intron
CAAACTGGCAGCACCTATCA+CGG 0.572986 2_2:+36878500 None:intergenic
TTGAACTAAAGCACCACTAC+CGG 0.574563 2_2:+36878171 None:intergenic
TCAACCCTGCCAAGAAGCCT+CGG 0.575981 2_2:+36878378 None:intergenic
GTATCGTGATAGCCAGGCTG+TGG 0.577136 2_2:-36875279 Msa0249650:three_prime_UTR
ATCGAAATCCATAAGCCTGA+AGG 0.582144 2_2:+36876441 None:intergenic
CATAGGATAAGCAGCTGAAG+AGG 0.583093 2_2:-36876568 Msa0249650:three_prime_UTR
CAGGCGAAAACCGAAACCAC+AGG 0.584676 2_2:+36878594 None:intergenic
CGGTCCTAACTGCATAAACA+TGG 0.587699 2_2:+36878398 None:intergenic
ACCTTCTTCCCATTTCCGCA+TGG 0.587749 2_2:+36877541 None:intergenic
GTGGAGTTGTTAGTGGACTT+GGG 0.588312 2_2:-36876496 Msa0249650:three_prime_UTR
GTCCTTCCCAACACAAATGG+TGG 0.593510 2_2:-36875245 Msa0249650:three_prime_UTR
CATTAGAATCTGACACTGCA+GGG 0.594106 2_2:+36877355 None:intergenic
CATAGAGCTGCAATACATGC+AGG 0.594541 2_2:-36875219 Msa0249650:intron
AAGTTAATCTAAAAGGAATG+AGG 0.596998 2_2:-36876674 Msa0249650:three_prime_UTR
AAAAGTGAAATGAACCTGAT+CGG 0.598666 2_2:+36877232 None:intergenic
CATGGCTAAGTATGGCAAAG+TGG 0.599899 2_2:-36877453 Msa0249650:three_prime_UTR
AGTCTCTAGCTATCGTCTTG+AGG 0.600364 2_2:-36874914 Msa0249650:three_prime_UTR
TTGCAGATATCCTGAAGGAT+CGG 0.600491 2_2:-36875310 Msa0249650:three_prime_UTR
GCAACTTAGTATCTTTGCAC+CGG 0.601933 2_2:-36878190 Msa0249650:exon
CTCAGCCAATGAAAGTTAGT+GGG 0.605897 2_2:-36877948 Msa0249650:three_prime_UTR
CATAACAGAACAGCAGCTGT+TGG 0.608552 2_2:-36878567 Msa0249650:CDS
ATATGAAAGACTATACAACT+TGG 0.609818 2_2:+36877743 None:intergenic
TTATGGAGCATCTTCACCAA+GGG 0.620476 2_2:-36874890 Msa0249650:three_prime_UTR
CAATCATTATATCCACAGCC+TGG 0.623559 2_2:+36875267 None:intergenic
ACAGGTTGCAGATATCCTGA+AGG 0.627860 2_2:-36875315 Msa0249650:intron
AATGAAAGTTAGTGGGTGCG+TGG 0.628150 2_2:-36877941 Msa0249650:three_prime_UTR
GTTCAGCATTCAATCTACTG+TGG 0.633099 2_2:+36877615 None:intergenic
AATTTAGGATCAGCAAGAGA+TGG 0.634057 2_2:-36874951 Msa0249650:three_prime_UTR
GATGAGATCAGTGTCTACAA+TGG 0.634391 2_2:-36876403 Msa0249650:three_prime_UTR
TGTTTATGCAGTTAGGACCG+AGG 0.648761 2_2:-36878395 Msa0249650:CDS
ATTATGGAGCATCTTCACCA+AGG 0.653602 2_2:-36874891 Msa0249650:three_prime_UTR
ATGGCTAAGTATGGCAAAGT+GGG 0.656929 2_2:-36877452 Msa0249650:three_prime_UTR
GAAAGTTAGTGGGTGCGTGG+AGG 0.661324 2_2:-36877938 Msa0249650:three_prime_UTR
CTAATTGTGATTCTAGACCT+CGG 0.667604 2_2:+36877424 None:intergenic
CCAACCTTGAAGAAAGAACG+AGG 0.679370 2_2:+36879324 None:intergenic
CAACCTTGAAGAAAGAACGA+GGG 0.685781 2_2:+36879325 None:intergenic
TGTTTCTGTAGGCTGTGCAG+CGG 0.701103 2_2:-36878541 Msa0249650:CDS
TGGCAAAGTGGGCTGCACCG+AGG 0.735778 2_2:-36877441 Msa0249650:three_prime_UTR
TCATAATGAAGTGAATACCG+GGG 0.737007 2_2:-36878227 Msa0249650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATTGAATTAATAAATG+AGG + chr2_2:36875032-36875051 None:intergenic 15.0%
!!! AATTCAATGTTTTTAGTTTT+TGG - chr2_2:36875040-36875059 Msa0249650:intron 15.0%
!!! ATTCAATGTTTTTAGTTTTT+GGG - chr2_2:36875041-36875060 Msa0249650:intron 15.0%
!! AAAACAAAAAATCAATTTGA+AGG + chr2_2:36876431-36876450 None:intergenic 15.0%
!!! GATTTTTTGTTTTTTTGTTT+TGG - chr2_2:36876438-36876457 Msa0249650:three_prime_UTR 15.0%
!! TTCAAATAAGTTAATCTAAA+AGG - chr2_2:36877523-36877542 Msa0249650:three_prime_UTR 15.0%
!! AAAATAAAAACAAAGTTCTA+AGG - chr2_2:36878392-36878411 Msa0249650:CDS 15.0%
!!! TAGAACTTTGTTTTTATTTT+AGG + chr2_2:36878392-36878411 None:intergenic 15.0%
!! AAAATAAAAACAAAGTTCTA+AGG - chr2_2:36878392-36878411 Msa0249650:CDS 15.0%
!! CTATAATAAGAGAATTGAAT+AGG + chr2_2:36874913-36874932 None:intergenic 20.0%
!! AAGAAAGAAAGTGATAAAAT+CGG + chr2_2:36875403-36875422 None:intergenic 20.0%
!! AGAATGTATTTAATACAAGA+CGG + chr2_2:36875499-36875518 None:intergenic 20.0%
!! ACCATTAATGTAAAAATTAG+GGG + chr2_2:36875924-36875943 None:intergenic 20.0%
!! CACCATTAATGTAAAAATTA+GGG + chr2_2:36875925-36875944 None:intergenic 20.0%
!!! TATTTTATTTGTGTGACTAA+AGG - chr2_2:36876092-36876111 Msa0249650:intron 20.0%
!! TTTAATATAAAACAAGCTAC+TGG + chr2_2:36876160-36876179 None:intergenic 20.0%
!! AAAGTGATAAATGAATAAGA+TGG - chr2_2:36877092-36877111 Msa0249650:intron 20.0%
!! AAGTGATAAATGAATAAGAT+GGG - chr2_2:36877093-36877112 Msa0249650:intron 20.0%
!!! TCAATTTTGTTTGTTTGTTT+TGG - chr2_2:36877344-36877363 Msa0249650:three_prime_UTR 20.0%
!!! CAATTTTGTTTGTTTGTTTT+GGG - chr2_2:36877345-36877364 Msa0249650:three_prime_UTR 20.0%
!!! AATTTTGTTTGTTTGTTTTG+GGG - chr2_2:36877346-36877365 Msa0249650:three_prime_UTR 20.0%
!! CTACTATCATTAATTCATTA+TGG + chr2_2:36878015-36878034 None:intergenic 20.0%
!!! AAATATATGAATGCATTTTC+TGG - chr2_2:36878351-36878370 Msa0249650:intron 20.0%
!!! TTGATAAATATTTTTGACAG+TGG + chr2_2:36878495-36878514 None:intergenic 20.0%
! ATAAGAGAATTGAATAGGAA+AGG + chr2_2:36874908-36874927 None:intergenic 25.0%
!!! TATTGTTTTTCTGTTTTTCG+TGG - chr2_2:36874946-36874965 Msa0249650:three_prime_UTR 25.0%
!!! TTTGTTGTTGTTAGAATTGT+AGG - chr2_2:36874977-36874996 Msa0249650:intron 25.0%
! TTCGGCTTAATTAGTAATAT+TGG - chr2_2:36875253-36875272 Msa0249650:three_prime_UTR 25.0%
! TCGGCTTAATTAGTAATATT+GGG - chr2_2:36875254-36875273 Msa0249650:three_prime_UTR 25.0%
!!! ATACATTCTGTTTTAGTTGT+TGG - chr2_2:36875510-36875529 Msa0249650:intron 25.0%
!! ACCCCTAATTTTTACATTAA+TGG - chr2_2:36875920-36875939 Msa0249650:intron 25.0%
! GCACCATTAATGTAAAAATT+AGG + chr2_2:36875926-36875945 None:intergenic 25.0%
! ATTCATAATGAAGTGAATAC+CGG - chr2_2:36875975-36875994 Msa0249650:intron 25.0%
! ACTGCTATTATTATCATGTT+TGG - chr2_2:36876385-36876404 Msa0249650:three_prime_UTR 25.0%
! ATATGAAAGACTATACAACT+TGG + chr2_2:36876464-36876483 None:intergenic 25.0%
! AAGACTATATTGTCAAAAGA+AGG + chr2_2:36876499-36876518 None:intergenic 25.0%
! AACATACACATAAAATTTGC+AGG + chr2_2:36876623-36876642 None:intergenic 25.0%
! ATAAACTAACTTCTATTGCA+TGG - chr2_2:36876733-36876752 Msa0249650:three_prime_UTR 25.0%
!! CAACTATTGTTGGAATTTTA+TGG - chr2_2:36876998-36877017 Msa0249650:intron 25.0%
! AAGTTAATCTAAAAGGAATG+AGG - chr2_2:36877530-36877549 Msa0249650:three_prime_UTR 25.0%
!! CTTATGGATTTCGATTTTAT+AGG - chr2_2:36877771-36877790 Msa0249650:three_prime_UTR 25.0%
!! TTTCGATTTTATAGGTCATT+TGG - chr2_2:36877779-36877798 Msa0249650:three_prime_UTR 25.0%
! CTATCATTAATTCATTATGG+AGG + chr2_2:36878012-36878031 None:intergenic 25.0%
! GCTTTAATTAGACAAAACAA+AGG - chr2_2:36878303-36878322 Msa0249650:intron 25.0%
!!! GTTCTAAAACAATGATTTGT+TGG + chr2_2:36879190-36879209 None:intergenic 25.0%
! AAAAATATCTAGTTATCCCT+TGG + chr2_2:36879333-36879352 None:intergenic 25.0%
!!! GGGATAACTAGATATTTTTA+TGG - chr2_2:36879334-36879353 Msa0249650:CDS 25.0%
!!! ATTTTTAGCCAATAGTGTTT+TGG - chr2_2:36879371-36879390 Msa0249650:CDS 25.0%
AAATATTCCAGAACATAGCA+AGG + chr2_2:36875113-36875132 None:intergenic 30.0%
TTAGTCATGCATACAATTGA+GGG + chr2_2:36875188-36875207 None:intergenic 30.0%
CAAATACTAATTTATCGAGC+TGG + chr2_2:36875361-36875380 None:intergenic 30.0%
! TGACATGTTGTATTAGTTTG+AGG - chr2_2:36875446-36875465 Msa0249650:intron 30.0%
! GAGGTGTGATTTCTTTTATT+TGG - chr2_2:36875465-36875484 Msa0249650:intron 30.0%
TTCATAATGAAGTGAATACC+GGG - chr2_2:36875976-36875995 Msa0249650:intron 30.0%
!! GCTTTAGTTCAAATTGCTTT+TGG - chr2_2:36876044-36876063 Msa0249650:intron 30.0%
CTGGTGAATTATCATATAAG+TGG + chr2_2:36876215-36876234 None:intergenic 30.0%
CTTATATGATAATTCACCAG+TGG - chr2_2:36876215-36876234 Msa0249650:intron 30.0%
ATAACCTGCAATTTAGATAG+TGG + chr2_2:36876300-36876319 None:intergenic 30.0%
GAGAACTCAAATGAAAGATA+AGG + chr2_2:36876342-36876361 None:intergenic 30.0%
TAATGACTATAAATGCACTC+TGG - chr2_2:36876563-36876582 Msa0249650:three_prime_UTR 30.0%
!!! GTGCTAATTTTTTTTCCATG+CGG - chr2_2:36876648-36876667 Msa0249650:three_prime_UTR 30.0%
!!! ATTTTTTTTCCATGCGGAAA+TGG - chr2_2:36876654-36876673 Msa0249650:three_prime_UTR 30.0%
!!! TTTTTTTTCCATGCGGAAAT+GGG - chr2_2:36876655-36876674 Msa0249650:three_prime_UTR 30.0%
AAAAGTGAAATGAACCTGAT+CGG + chr2_2:36876975-36876994 None:intergenic 30.0%
! CACTTTTATGCAACTATTGT+TGG - chr2_2:36876988-36877007 Msa0249650:intron 30.0%
AAATAAAAAAAAGGGCAACC+CGG + chr2_2:36877244-36877263 None:intergenic 30.0%
TTGGTTACAACCATAAGTTT+AGG - chr2_2:36877311-36877330 Msa0249650:three_prime_UTR 30.0%
AACCATAAGTTTAGGCTTTA+GGG - chr2_2:36877319-36877338 Msa0249650:three_prime_UTR 30.0%
TTACGAGAACTTATAGAAAC+AGG + chr2_2:36877470-36877489 None:intergenic 30.0%
!! TTGTTTTGTGCATTTTGCAT+AGG - chr2_2:36877619-36877638 Msa0249650:three_prime_UTR 30.0%
!! GACTTGTTTGGTGTAAATTA+AGG - chr2_2:36877658-36877677 Msa0249650:three_prime_UTR 30.0%
GAAATGTACAGCTTATGTAT+AGG - chr2_2:36878052-36878071 Msa0249650:intron 30.0%
TGTCACATTTGCATATTTGT+TGG - chr2_2:36878089-36878108 Msa0249650:intron 30.0%
CTACAAAACTAGAGAATCAT+TGG + chr2_2:36878174-36878193 None:intergenic 30.0%
!!! TGATTCTCTAGTTTTGTAGA+TGG - chr2_2:36878175-36878194 Msa0249650:three_prime_UTR 30.0%
!!! GATTCTCTAGTTTTGTAGAT+GGG - chr2_2:36878176-36878195 Msa0249650:three_prime_UTR 30.0%
!! CTAACATTTGGTCTTTTATG+TGG - chr2_2:36878214-36878233 Msa0249650:CDS 30.0%
!!! TTTTGTGTTGTTTGCACATA+CGG - chr2_2:36878260-36878279 Msa0249650:intron 30.0%
TAGACAAAACAAAGGCTTAA+TGG - chr2_2:36878311-36878330 Msa0249650:intron 30.0%
! AAACAAAGGCTTAATGGTTT+TGG - chr2_2:36878317-36878336 Msa0249650:intron 30.0%
!!! ATGAATGCATTTTCTGGTTT+AGG - chr2_2:36878357-36878376 Msa0249650:intron 30.0%
!! TTTCTGGTTTAGGTGTATAT+AGG - chr2_2:36878367-36878386 Msa0249650:intron 30.0%
! TATTTCTAACGTACTTGATG+CGG + chr2_2:36878548-36878567 None:intergenic 30.0%
ATACTTTCTTGACTGAAAGA+TGG + chr2_2:36879069-36879088 None:intergenic 30.0%
!! TAAAACAATGATTTGTTGGC+TGG + chr2_2:36879186-36879205 None:intergenic 30.0%
TTCCAAAACCAAAACACTAT+TGG + chr2_2:36879382-36879401 None:intergenic 30.0%
!!! TCAACATCTTTTCTGGAGTA+GGG + chr2_2:36874838-36874857 None:intergenic 35.0%
! ATCGTAGTCAACATCTTTTC+TGG + chr2_2:36874845-36874864 None:intergenic 35.0%
GCTAAGAAATTGTGACAGTA+GGG + chr2_2:36875080-36875099 None:intergenic 35.0%
AGCTAAGAAATTGTGACAGT+AGG + chr2_2:36875081-36875100 None:intergenic 35.0%
! ATTAGTTCCTTGCTATGTTC+TGG - chr2_2:36875103-36875122 Msa0249650:intron 35.0%
GTTAGTCATGCATACAATTG+AGG + chr2_2:36875189-36875208 None:intergenic 35.0%
TGAGATGAGATGAGGTAATA+AGG - chr2_2:36875224-36875243 Msa0249650:three_prime_UTR 35.0%
GAGATGAGATGAGGTAATAA+GGG - chr2_2:36875225-36875244 Msa0249650:three_prime_UTR 35.0%
TTAGTTGTTGGATGACGTAA+CGG - chr2_2:36875522-36875541 Msa0249650:intron 35.0%
! TTCGCTATGGGTTTGAATTT+TGG - chr2_2:36875762-36875781 Msa0249650:intron 35.0%
AAAGCCATGTTTATGCAGTT+AGG - chr2_2:36875802-36875821 Msa0249650:intron 35.0%
TCATAATGAAGTGAATACCG+GGG - chr2_2:36875977-36875996 Msa0249650:intron 35.0%
CTATAAATAAGAGGATCCAC+TGG + chr2_2:36876234-36876253 None:intergenic 35.0%
! CAATTTAGATAGTGGCGTAA+AGG + chr2_2:36876292-36876311 None:intergenic 35.0%
AGCAGTCAAACAAAAATGCA+TGG + chr2_2:36876371-36876390 None:intergenic 35.0%
!!! TGGAGAGTTTTGGCTTTATT+TGG - chr2_2:36876686-36876705 Msa0249650:three_prime_UTR 35.0%
TTCTATTGCATGGCTAAGTA+TGG - chr2_2:36876743-36876762 Msa0249650:three_prime_UTR 35.0%
CTAATTGTGATTCTAGACCT+CGG + chr2_2:36876783-36876802 None:intergenic 35.0%
!!! TGATGATGTTGTTTTTGTCC+TGG - chr2_2:36877120-36877139 Msa0249650:three_prime_UTR 35.0%
CAACCATAAGTTTAGGCTTT+AGG - chr2_2:36877318-36877337 Msa0249650:three_prime_UTR 35.0%
ATCCCTAAAGCCTAAACTTA+TGG + chr2_2:36877324-36877343 None:intergenic 35.0%
ACTCTCCAAGCTATATTGTA+GGG - chr2_2:36877402-36877421 Msa0249650:three_prime_UTR 35.0%
ATAGACCCTACAATATAGCT+TGG + chr2_2:36877410-36877429 None:intergenic 35.0%
AAGCTATATTGTAGGGTCTA+TGG - chr2_2:36877409-36877428 Msa0249650:three_prime_UTR 35.0%
AGCTATATTGTAGGGTCTAT+GGG - chr2_2:36877410-36877429 Msa0249650:three_prime_UTR 35.0%
! GGAGAAAATTGAGTACCTTT+TGG - chr2_2:36877679-36877698 Msa0249650:three_prime_UTR 35.0%
TGCGTATATAGTCAAGTGTA+TGG - chr2_2:36878685-36878704 Msa0249650:intron 35.0%
!! CTGCTTTTCGAGAAGTTTAT+TGG - chr2_2:36878718-36878737 Msa0249650:intron 35.0%
TTATATAGTATGCCCTACTG+TGG - chr2_2:36878743-36878762 Msa0249650:intron 35.0%
AAACCAAGCATACTCTTTAC+AGG - chr2_2:36878871-36878890 Msa0249650:intron 35.0%
TATTGACAATACTGATGCGA+AGG + chr2_2:36879118-36879137 None:intergenic 35.0%
TCTTTCCAGCCAACAAATTT+AGG - chr2_2:36879238-36879257 Msa0249650:intron 35.0%
CTTGCTGATCCTAAATTTGT+TGG + chr2_2:36879250-36879269 None:intergenic 35.0%
! AATTTAGGATCAGCAAGAGA+TGG - chr2_2:36879253-36879272 Msa0249650:intron 35.0%
!!! AGCCAATAGTGTTTTGGTTT+TGG - chr2_2:36879377-36879396 Msa0249650:CDS 35.0%
!!! GTCAACATCTTTTCTGGAGT+AGG + chr2_2:36874839-36874858 None:intergenic 40.0%
CAACCTTGAAGAAAGAACGA+GGG + chr2_2:36874882-36874901 None:intergenic 40.0%
TGTTGTGATGAGATGAGATG+AGG - chr2_2:36875216-36875235 Msa0249650:intron 40.0%
GAGGTAATAAGGGTCTCTTT+CGG - chr2_2:36875235-36875254 Msa0249650:three_prime_UTR 40.0%
GGGTTTAAATTCCGTGTCTT+AGG - chr2_2:36875274-36875293 Msa0249650:three_prime_UTR 40.0%
ACCGGCGTTAAAAGTCTTTA+GGG - chr2_2:36875302-36875321 Msa0249650:three_prime_UTR 40.0%
! ACCCTAAAGACTTTTAACGC+CGG + chr2_2:36875306-36875325 None:intergenic 40.0%
CTAATTTATCGAGCTGGAAC+TGG + chr2_2:36875355-36875374 None:intergenic 40.0%
TTAGTATTTGTAGCTGCGTG+TGG - chr2_2:36875371-36875390 Msa0249650:intron 40.0%
TAGTATTTGTAGCTGCGTGT+GGG - chr2_2:36875372-36875391 Msa0249650:intron 40.0%
! CAACTTAACAAGTAGCCTTG+TGG - chr2_2:36875559-36875578 Msa0249650:intron 40.0%
GCAACTTAGTATCTTTGCAC+CGG - chr2_2:36876014-36876033 Msa0249650:intron 40.0%
! TTGAACTAAAGCACCACTAC+CGG + chr2_2:36876036-36876055 None:intergenic 40.0%
GGCTGAGCTCTATAAATAAG+AGG + chr2_2:36876243-36876262 None:intergenic 40.0%
CTCAGCCAATGAAAGTTAGT+GGG - chr2_2:36876256-36876275 Msa0249650:intron 40.0%
TACGCCACTATCTAAATTGC+AGG - chr2_2:36876293-36876312 Msa0249650:intron 40.0%
GTTCAGCATTCAATCTACTG+TGG + chr2_2:36876592-36876611 None:intergenic 40.0%
ATGGCTAAGTATGGCAAAGT+GGG - chr2_2:36876752-36876771 Msa0249650:three_prime_UTR 40.0%
CATTAGAATCTGACACTGCA+GGG + chr2_2:36876852-36876871 None:intergenic 40.0%
GAGAGTTAAACTTTCGCGAA+AGG + chr2_2:36876918-36876937 None:intergenic 40.0%
!!! TTACCCTGTTTTTACACAGG+AGG + chr2_2:36877152-36877171 None:intergenic 40.0%
TCCTGTGTAAAAACAGGGTA+AGG - chr2_2:36877151-36877170 Msa0249650:three_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr2_2:36877177-36877196 Msa0249650:three_prime_UTR 40.0%
ACAACTGCTACAGCATATCA+TGG + chr2_2:36877292-36877311 None:intergenic 40.0%
TGATATGCTGTAGCAGTTGT+TGG - chr2_2:36877292-36877311 Msa0249650:three_prime_UTR 40.0%
CACTCTCCAAGCTATATTGT+AGG - chr2_2:36877401-36877420 Msa0249650:three_prime_UTR 40.0%
ATCGAAATCCATAAGCCTGA+AGG + chr2_2:36877766-36877785 None:intergenic 40.0%
GATGAGATCAGTGTCTACAA+TGG - chr2_2:36877801-36877820 Msa0249650:three_prime_UTR 40.0%
! TTCTACACTTTTGCTCTCAG+TGG - chr2_2:36877828-36877847 Msa0249650:three_prime_UTR 40.0%
! TTGTAGCTGATTCCACTTAG+TGG - chr2_2:36877909-36877928 Msa0249650:three_prime_UTR 40.0%
! TGTAGCTGATTCCACTTAGT+GGG - chr2_2:36877910-36877929 Msa0249650:three_prime_UTR 40.0%
TGATTCCACTTAGTGGGATA+AGG - chr2_2:36877916-36877935 Msa0249650:three_prime_UTR 40.0%
! AAAAGCCTTATCCCACTAAG+TGG + chr2_2:36877924-36877943 None:intergenic 40.0%
AGACACTGAAAGAAGAGAAG+AGG - chr2_2:36878123-36878142 Msa0249650:intron 40.0%
GACACTGAAAGAAGAGAAGA+GGG - chr2_2:36878124-36878143 Msa0249650:intron 40.0%
!!! CTCTAGTTTTGTAGATGGGA+TGG - chr2_2:36878180-36878199 Msa0249650:three_prime_UTR 40.0%
GAGATGTCTCTGCTAACATT+TGG - chr2_2:36878202-36878221 Msa0249650:exon 40.0%
!!! CAAAGGCTTAATGGTTTTGG+TGG - chr2_2:36878320-36878339 Msa0249650:intron 40.0%
GTGTTTGATGCTGCATATTG+AGG - chr2_2:36878418-36878437 Msa0249650:intron 40.0%
! AACAGTTCAGCAAACTTGCT+TGG + chr2_2:36878606-36878625 None:intergenic 40.0%
TTGTAGGTTATAGACCCACT+AGG + chr2_2:36878785-36878804 None:intergenic 40.0%
! TAGTGGGTCTATAACCTACA+AGG - chr2_2:36878784-36878803 Msa0249650:intron 40.0%
! TTCAGAGCACTAATCCTTGT+AGG + chr2_2:36878801-36878820 None:intergenic 40.0%
! CTTTTGCCAATGTTCATCGA+TGG - chr2_2:36878842-36878861 Msa0249650:intron 40.0%
ATCATGCCATCGATGAACAT+TGG + chr2_2:36878851-36878870 None:intergenic 40.0%
! CAACCTGTAAAGAGTATGCT+TGG + chr2_2:36878877-36878896 None:intergenic 40.0%
TTGCAGATATCCTGAAGGAT+CGG - chr2_2:36878894-36878913 Msa0249650:intron 40.0%
CAATCATTATATCCACAGCC+TGG + chr2_2:36878940-36878959 None:intergenic 40.0%
ATTGTCCTTCCCAACACAAA+TGG - chr2_2:36878956-36878975 Msa0249650:intron 40.0%
ATGGTTCCACCATTTGTGTT+GGG + chr2_2:36878968-36878987 None:intergenic 40.0%
TATGGTTCCACCATTTGTGT+TGG + chr2_2:36878969-36878988 None:intergenic 40.0%
!! CTGATCCTAAATTTGTTGGC+TGG + chr2_2:36879246-36879265 None:intergenic 40.0%
AGCTATCGTCTTGAGGATTA+TGG - chr2_2:36879297-36879316 Msa0249650:intron 40.0%
! ATTATGGAGCATCTTCACCA+AGG - chr2_2:36879313-36879332 Msa0249650:intron 40.0%
! TTATGGAGCATCTTCACCAA+GGG - chr2_2:36879314-36879333 Msa0249650:intron 40.0%
CCAACCTTGAAGAAAGAACG+AGG + chr2_2:36874883-36874902 None:intergenic 45.0%
CCTCGTTCTTTCTTCAAGGT+TGG - chr2_2:36874880-36874899 Msa0249650:three_prime_UTR 45.0%
CACCGGCGTTAAAAGTCTTT+AGG - chr2_2:36875301-36875320 Msa0249650:three_prime_UTR 45.0%
AGTATTTGTAGCTGCGTGTG+GGG - chr2_2:36875373-36875392 Msa0249650:intron 45.0%
TGCTGTTCTGTTATGACAGC+AGG + chr2_2:36875632-36875651 None:intergenic 45.0%
CATAACAGAACAGCAGCTGT+TGG - chr2_2:36875637-36875656 Msa0249650:intron 45.0%
!!! CCAGTTTGGGGTTTTAGCTT+GGG - chr2_2:36875719-36875738 Msa0249650:intron 45.0%
!!! CAGTTTGGGGTTTTAGCTTG+GGG - chr2_2:36875720-36875739 Msa0249650:intron 45.0%
CGGTCCTAACTGCATAAACA+TGG + chr2_2:36875809-36875828 None:intergenic 45.0%
TGTTTATGCAGTTAGGACCG+AGG - chr2_2:36875809-36875828 Msa0249650:intron 45.0%
!! ATTAATGGTGCTGCAGAGAC+TGG - chr2_2:36875935-36875954 Msa0249650:intron 45.0%
! TAGTATCTTTGCACCGGTAG+TGG - chr2_2:36876020-36876039 Msa0249650:intron 45.0%
GCTCAGCCAATGAAAGTTAG+TGG - chr2_2:36876255-36876274 Msa0249650:intron 45.0%
ACGCACCCACTAACTTTCAT+TGG + chr2_2:36876264-36876283 None:intergenic 45.0%
! AATGAAAGTTAGTGGGTGCG+TGG - chr2_2:36876263-36876282 Msa0249650:intron 45.0%
! GGAAGAAGGTTGGAGAGTTT+TGG - chr2_2:36876676-36876695 Msa0249650:three_prime_UTR 45.0%
CATGGCTAAGTATGGCAAAG+TGG - chr2_2:36876751-36876770 Msa0249650:three_prime_UTR 45.0%
GCATTAGAATCTGACACTGC+AGG + chr2_2:36876853-36876872 None:intergenic 45.0%
!! AAACTTTCGCGAAAGGCACT+CGG + chr2_2:36876911-36876930 None:intergenic 45.0%
ACAGCCTCCTGTGTAAAAAC+AGG - chr2_2:36877145-36877164 Msa0249650:three_prime_UTR 45.0%
CAGCCTCCTGTGTAAAAACA+GGG - chr2_2:36877146-36877165 Msa0249650:three_prime_UTR 45.0%
!!! GCCTTACCCTGTTTTTACAC+AGG + chr2_2:36877155-36877174 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr2_2:36877173-36877192 Msa0249650:three_prime_UTR 45.0%
GCGTACAATACACCAAATGG+TGG - chr2_2:36877176-36877195 Msa0249650:three_prime_UTR 45.0%
CATAGGATAAGCAGCTGAAG+AGG - chr2_2:36877636-36877655 Msa0249650:three_prime_UTR 45.0%
!! GAGTACCTTTTGGAGACAAG+TGG - chr2_2:36877689-36877708 Msa0249650:three_prime_UTR 45.0%
CAACTCCACTTGTCTCCAAA+AGG + chr2_2:36877697-36877716 None:intergenic 45.0%
GAGACAAGTGGAGTTGTTAG+TGG - chr2_2:36877701-36877720 Msa0249650:three_prime_UTR 45.0%
!! AGTGGAGTTGTTAGTGGACT+TGG - chr2_2:36877707-36877726 Msa0249650:three_prime_UTR 45.0%
!! GTGGAGTTGTTAGTGGACTT+GGG - chr2_2:36877708-36877727 Msa0249650:three_prime_UTR 45.0%
!! GTTGTTAGTGGACTTGGGAA+AGG - chr2_2:36877713-36877732 Msa0249650:three_prime_UTR 45.0%
!!! AGGCTTAATGGTTTTGGTGG+AGG - chr2_2:36878323-36878342 Msa0249650:intron 45.0%
TTCTAACGTACTTGATGCGG+AGG + chr2_2:36878545-36878564 None:intergenic 45.0%
ACAGGTTGCAGATATCCTGA+AGG - chr2_2:36878889-36878908 Msa0249650:intron 45.0%
TTCCACCATTTGTGTTGGGA+AGG + chr2_2:36878964-36878983 None:intergenic 45.0%
CTGCATGTATTGCAGCTCTA+TGG + chr2_2:36878987-36879006 None:intergenic 45.0%
CATAGAGCTGCAATACATGC+AGG - chr2_2:36878985-36879004 Msa0249650:intron 45.0%
AGGCGAGTACAAAATGACGA+TGG + chr2_2:36879098-36879117 None:intergenic 45.0%
GACGATAGCTAGAGACTCAT+AGG + chr2_2:36879287-36879306 None:intergenic 45.0%
AGTCTCTAGCTATCGTCTTG+AGG - chr2_2:36879290-36879309 Msa0249650:intron 45.0%
!!! TTTTATTTTATATCAATTAT+CGG - chr2_2:36875896-36875915 Msa0249650:intron 5.0%
!! TCAATAAAAAATAAAAAAAA+GGG + chr2_2:36877252-36877271 None:intergenic 5.0%
!! ATCAATAAAAAATAAAAAAA+AGG + chr2_2:36877253-36877272 None:intergenic 5.0%
GAAAGAACGAGGGCGAAACT+TGG + chr2_2:36874872-36874891 None:intergenic 50.0%
TCGCCCTCGTTCTTTCTTCA+AGG - chr2_2:36874876-36874895 Msa0249650:three_prime_UTR 50.0%
TCCGTGTCTTAGGAATGCAC+CGG - chr2_2:36875284-36875303 Msa0249650:three_prime_UTR 50.0%
TTATCGAGCTGGAACTGGAC+AGG + chr2_2:36875350-36875369 None:intergenic 50.0%
! AGCCTTGTGGTTGTTGTTCG+TGG - chr2_2:36875572-36875591 Msa0249650:intron 50.0%
AGCCACGAACAACAACCACA+AGG + chr2_2:36875577-36875596 None:intergenic 50.0%
! TTGTGGTTGTTGTTCGTGGC+TGG - chr2_2:36875576-36875595 Msa0249650:intron 50.0%
!! GCTGTTGGTGCTGTTTCTGT+AGG - chr2_2:36875652-36875671 Msa0249650:intron 50.0%
! TGTTTCTGTAGGCTGTGCAG+CGG - chr2_2:36875663-36875682 Msa0249650:intron 50.0%
CAAACTGGCAGCACCTATCA+CGG + chr2_2:36875707-36875726 None:intergenic 50.0%
! GTGATAGGTGCTGCCAGTTT+GGG - chr2_2:36875706-36875725 Msa0249650:intron 50.0%
! TGATAGGTGCTGCCAGTTTG+GGG - chr2_2:36875707-36875726 Msa0249650:intron 50.0%
!!! GCCAGTTTGGGGTTTTAGCT+TGG - chr2_2:36875718-36875737 Msa0249650:intron 50.0%
CCCAAGCTAAAACCCCAAAC+TGG + chr2_2:36875722-36875741 None:intergenic 50.0%
!! TTTAGCTTGGGGCTGTTCAG+CGG - chr2_2:36875731-36875750 Msa0249650:intron 50.0%
TTGGCAGGGTTGACGATTCA+AGG - chr2_2:36875836-36875855 Msa0249650:intron 50.0%
TGGCAGGGTTGACGATTCAA+GGG - chr2_2:36875837-36875856 Msa0249650:intron 50.0%
TGCGTTTCGATCTTGTTCCC+CGG + chr2_2:36875997-36876016 None:intergenic 50.0%
TCCATGCGGAAATGGGAAGA+AGG - chr2_2:36876662-36876681 Msa0249650:three_prime_UTR 50.0%
ACCTTCTTCCCATTTCCGCA+TGG + chr2_2:36876666-36876685 None:intergenic 50.0%
TGCGGAAATGGGAAGAAGGT+TGG - chr2_2:36876666-36876685 Msa0249650:three_prime_UTR 50.0%
ATGAACCTGATCGGCAACTG+TGG + chr2_2:36876966-36876985 None:intergenic 50.0%
! TTACACAGGAGGCTGTTTCC+AGG + chr2_2:36877141-36877160 None:intergenic 50.0%
TTAAAGCTCCCGCATACGCA+GGG + chr2_2:36877216-36877235 None:intergenic 50.0%
! GCAGCTGAAGAGGACTTGTT+TGG - chr2_2:36877646-36877665 Msa0249650:three_prime_UTR 50.0%
GGAGTTACTGCTAGCAGCAT+TGG - chr2_2:36877734-36877753 Msa0249650:three_prime_UTR 50.0%
! CAGCATTGGAGTACTCCTTC+AGG - chr2_2:36877748-36877767 Msa0249650:three_prime_UTR 50.0%
! GGAGTACTCCTTCAGGCTTA+TGG - chr2_2:36877755-36877774 Msa0249650:three_prime_UTR 50.0%
CACTGTCGTGTCTGTGTCAA+TGG - chr2_2:36877969-36877988 Msa0249650:three_prime_UTR 50.0%
TTCGTGGTATCGTGATAGCC+AGG - chr2_2:36878919-36878938 Msa0249650:intron 50.0%
GTCCTTCCCAACACAAATGG+TGG - chr2_2:36878959-36878978 Msa0249650:intron 50.0%
! TCTGGAGTAGGGCAGAGACT+TGG + chr2_2:36874827-36874846 None:intergenic 55.0%
GCCGGTGCATTCCTAAGACA+CGG + chr2_2:36875288-36875307 None:intergenic 55.0%
! TGTTGTTCGTGGCTGGCTGT+AGG - chr2_2:36875583-36875602 Msa0249650:intron 55.0%
! GTTGTTCGTGGCTGGCTGTA+GGG - chr2_2:36875584-36875603 Msa0249650:intron 55.0%
! TTGTTCGTGGCTGGCTGTAG+GGG - chr2_2:36875585-36875604 Msa0249650:intron 55.0%
TGTAGGGGGTCCTGTGGTTT+CGG - chr2_2:36875600-36875619 Msa0249650:intron 55.0%
CAGGCGAAAACCGAAACCAC+AGG + chr2_2:36875613-36875632 None:intergenic 55.0%
!!! GTGTCGGTTTTGGCCGTGAT+AGG - chr2_2:36875691-36875710 Msa0249650:intron 55.0%
! CGTGATAGGTGCTGCCAGTT+TGG - chr2_2:36875705-36875724 Msa0249650:intron 55.0%
! TTAGCTTGGGGCTGTTCAGC+GGG - chr2_2:36875732-36875751 Msa0249650:intron 55.0%
! AGCGGGTAATGGCTTCGCTA+TGG - chr2_2:36875749-36875768 Msa0249650:intron 55.0%
! GCGGGTAATGGCTTCGCTAT+GGG - chr2_2:36875750-36875769 Msa0249650:intron 55.0%
CAGTTAGGACCGAGGCTTCT+TGG - chr2_2:36875817-36875836 Msa0249650:intron 55.0%
TCAACCCTGCCAAGAAGCCT+CGG + chr2_2:36875829-36875848 None:intergenic 55.0%
! GAAAGTTAGTGGGTGCGTGG+AGG - chr2_2:36876266-36876285 Msa0249650:intron 55.0%
GAAGTCCACAGTTGCCGATC+AGG - chr2_2:36876958-36876977 Msa0249650:intron 55.0%
CTTAAAGCTCCCGCATACGC+AGG + chr2_2:36877217-36877236 None:intergenic 55.0%
!! TGCGGGAGCTTTAAGTGCAC+CGG - chr2_2:36877222-36877241 Msa0249650:three_prime_UTR 55.0%
CAGTGGCTTCACTCATGCTC+AGG - chr2_2:36877845-36877864 Msa0249650:three_prime_UTR 55.0%
! ATCCGCTTGCTGCCACAGTA+GGG + chr2_2:36878758-36878777 None:intergenic 55.0%
TCCTGAAGGATCGGACTTCG+TGG - chr2_2:36878903-36878922 Msa0249650:intron 55.0%
ACCACGAAGTCCGATCCTTC+AGG + chr2_2:36878907-36878926 None:intergenic 55.0%
GTATCGTGATAGCCAGGCTG+TGG - chr2_2:36878925-36878944 Msa0249650:intron 55.0%
! TGTTCGTGGCTGGCTGTAGG+GGG - chr2_2:36875586-36875605 Msa0249650:intron 60.0%
!!! AGCGGCTGGTGTGTCGGTTT+TGG - chr2_2:36875681-36875700 Msa0249650:intron 60.0%
TGGGGCTGTTCAGCGGGTAA+TGG - chr2_2:36875738-36875757 Msa0249650:intron 60.0%
TAGGACCGAGGCTTCTTGGC+AGG - chr2_2:36875821-36875840 Msa0249650:intron 60.0%
AGGACCGAGGCTTCTTGGCA+GGG - chr2_2:36875822-36875841 Msa0249650:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr2_2:36877189-36877208 Msa0249650:three_prime_UTR 60.0%
!! GCGGGAGCTTTAAGTGCACC+GGG - chr2_2:36877223-36877242 Msa0249650:three_prime_UTR 60.0%
TGCCCTACTGTGGCAGCAAG+CGG - chr2_2:36878753-36878772 Msa0249650:intron 60.0%
! CATCCGCTTGCTGCCACAGT+AGG + chr2_2:36878759-36878778 None:intergenic 60.0%
ACTGTGGCAGCAAGCGGATG+TGG - chr2_2:36878759-36878778 Msa0249650:intron 60.0%
AGCAAGCGGATGTGGCCTAG+TGG - chr2_2:36878767-36878786 Msa0249650:intron 60.0%
GCAAGCGGATGTGGCCTAGT+GGG - chr2_2:36878768-36878787 Msa0249650:intron 60.0%
TCTGTAGGCTGTGCAGCGGC+TGG - chr2_2:36875667-36875686 Msa0249650:intron 65.0%
CTGTGCAGCGGCTGGTGTGT+CGG - chr2_2:36875675-36875694 Msa0249650:intron 65.0%
!! TGGCAAAGTGGGCTGCACCG+AGG - chr2_2:36876763-36876782 Msa0249650:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr2_2:36877191-36877210 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr2_2:36877204-36877223 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr2_2:36877205-36877224 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr2_2:36877204-36877223 Msa0249650:three_prime_UTR 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr2_2:36877205-36877224 Msa0249650:three_prime_UTR 65.0%
GCTGGCTGTAGGGGGTCCTG+TGG - chr2_2:36875594-36875613 Msa0249650:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr2_2:36877206-36877225 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr2_2:36877210-36877229 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr2_2:36877211-36877230 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36874820 36879406 36874820 ID=Msa0249650;Name=Msa0249650
chr2_2 mRNA 36874820 36879406 36874820 ID=Msa0249650-mRNA-1;Parent=Msa0249650;Name=Msa0249650-mRNA-1;_AED=0.16;_eAED=0.19;_QI=0|0.71|0.62|1|0.57|0.5|8|1800|107
chr2_2 exon 36874820 36874979 36874820 ID=Msa0249650-mRNA-1:exon:11730;Parent=Msa0249650-mRNA-1
chr2_2 exon 36875220 36875333 36875220 ID=Msa0249650-mRNA-1:exon:11729;Parent=Msa0249650-mRNA-1
chr2_2 exon 36876360 36876955 36876360 ID=Msa0249650-mRNA-1:exon:11728;Parent=Msa0249650-mRNA-1
chr2_2 exon 36877105 36877991 36877105 ID=Msa0249650-mRNA-1:exon:11727;Parent=Msa0249650-mRNA-1
chr2_2 exon 36878161 36878275 36878161 ID=Msa0249650-mRNA-1:exon:11726;Parent=Msa0249650-mRNA-1
chr2_2 exon 36878368 36878429 36878368 ID=Msa0249650-mRNA-1:exon:11725;Parent=Msa0249650-mRNA-1
chr2_2 exon 36878514 36878621 36878514 ID=Msa0249650-mRNA-1:exon:11724;Parent=Msa0249650-mRNA-1
chr2_2 exon 36879325 36879406 36879325 ID=Msa0249650-mRNA-1:exon:11723;Parent=Msa0249650-mRNA-1
chr2_2 CDS 36879325 36879406 36879325 ID=Msa0249650-mRNA-1:cds;Parent=Msa0249650-mRNA-1
chr2_2 CDS 36878514 36878621 36878514 ID=Msa0249650-mRNA-1:cds;Parent=Msa0249650-mRNA-1
chr2_2 CDS 36878368 36878429 36878368 ID=Msa0249650-mRNA-1:cds;Parent=Msa0249650-mRNA-1
chr2_2 CDS 36878204 36878275 36878204 ID=Msa0249650-mRNA-1:cds;Parent=Msa0249650-mRNA-1
chr2_2 three_prime_UTR 36878161 36878203 36878161 ID=Msa0249650-mRNA-1:three_prime_utr;Parent=Msa0249650-mRNA-1
chr2_2 three_prime_UTR 36877105 36877991 36877105 ID=Msa0249650-mRNA-1:three_prime_utr;Parent=Msa0249650-mRNA-1
chr2_2 three_prime_UTR 36876360 36876955 36876360 ID=Msa0249650-mRNA-1:three_prime_utr;Parent=Msa0249650-mRNA-1
chr2_2 three_prime_UTR 36875220 36875333 36875220 ID=Msa0249650-mRNA-1:three_prime_utr;Parent=Msa0249650-mRNA-1
chr2_2 three_prime_UTR 36874820 36874979 36874820 ID=Msa0249650-mRNA-1:three_prime_utr;Parent=Msa0249650-mRNA-1
Gene Sequence

>Msa0249650

ATGTCCAAGTCTCTGCCCTACTCCAGAAAAGATGTTGACTACGATAACGCCAAGTTTCGCCCTCGTTCTTTCTTCAAGGTTGGGGGTCCTGTGGTTTCGGTTTTCGCCTGCTGTCATAACAGAACAGCAGCTGTTGGTGCTGTTTCTGTAGGCTGTGCAGCGGCTGGTGTGTCGGTTTTGGCCGTGATAGATTTCAAAGCCATGTTTATGCAGTTAGGACCGAGGCTTCTTGGCAGGGTTGACGATTCAAGGAGACTGGTTAGAGATTTTTATAAGATTCATAATGAAGTGAATACCGGGGAACAAGATCGAAACGCAACTTAG
Protein sequence

>Msa0249650

MSKSLPYSRKDVDYDNAKFRPRSFFKVGGPVVSVFACCHNRTAAVGAVSVGCAAAGVSVLAVIDFKAMFMQLGPRLLGRVDDSRRLVRDFYKIHNEVNTGEQDRNAT*